Friday 10 October
08:30

"Friday 10 October"

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A20
08:30 - 09:30

FT2 Oral - Translation: Fetal to Adult

Chairpersons: Klaus EICKEL (Professor for Medical Computing) (Chairperson, Bremerhaven, Germany), Daniela PRAYER (Chairperson, Vienna, Austria)
FT2: Cycle of Translation
08:30 - 08:40 #45873 - PG016 Fetal MRI with a wearable coil vest at 3 T — proof of concept and perspectives.
PG016 Fetal MRI with a wearable coil vest at 3 T — proof of concept and perspectives.

Recently, fetal MRI has become the secondary imaging modality in clinical routine [1,2]. Despite high volumetric imaging quality and rich soft tissue contrast, it has limitations such as tedious patient positioning and the tradeoff between patient comfort, imaging speed, and quality. Besides the widely used 1.5 T MRI in clinical routine, low-field fetal MRI allows for more accessible MR exams [3] but high-field MRI at 3 T provides highest SNR and anatomical details [4]. Clinical fetal MRI is mostly performed using the integrated spine coil and a semi-flexible coil for abdominal or thoracic applications. The concept of using flexible coils has already been proven to be beneficial for breast [5,6], knee [7,8], neck, ankle or spine [9], and pediatric MRI [10,11]. With pregnant patients, coil flexibility allows for adjustable patient positioning, either in supine or lying on the side depending on patient preferences and medical considerations. Moreover, dedicated wearable coils designed for the target application can optimize SNR and reduce measurement time, and consequently, allow for a comprehensive and patient-friendly fetal MRI exam. In this work, the aim was to demonstrate the feasibility of high-resolution fetal 3 T MRI employing a wearable coil vest (“Bracoil” [5]) initially designed for breast MRI. To this end, we tested its usability on a phantom and in vivo, and derived implications for the development of a dedicated wearable fetal coil.

The MRI workflow in our study was to first assess the coil coverage and tune sequence parameters on an anatomy- and tissue-mimicking fetal phantom due to the restricted measurement time (<30 minutes) on pregnant volunteers. The in vivo study was IRB-approved (“EDEN”, Nancy, France, ClinicalTrials.gov Identifier: NCT05218460) and written informed consent was obtained from a volunteer (29 years, abdomen circumference 92 cm, 34 weeks gestational age, posterior placenta). Fig. 1 shows a sketch of the measurement setup and coil positioning for phantom MRI [12] (Fig.1A) using the wearable 28-channel breast coil5 (“BraCoil”, Medical University of Vienna, Austria) (Fig.1B). A semi-flexible 18-channel coil (“Body18”, Siemens Healthineers, Erlangen, Germany) was used as a reference. The healthy pregnant volunteer was positioned feet first and laterally on the patient bed as instructed by medical personnel to avoid vena cava compression, with the wearable coil wrapped around the caudal part of the gravid abdomen (Fig.1C). In fetal phantom MRI, 3D GRE scans were acquired to assess the coil coverage in comparison to the reference coil. In vivo, three-plane True Fast Imaging with Steady-State Free Precession (TRUFI) [13] data were acquired and a motion-correcting super-resolution algorithm [14] was applied to illustrate organ level details of the fetus. Fetal organs, and the amniotic fluid sac were manually segmented using MITK (2024) [15].

Example images showing fetal phantom GRE images in three spatial orientations in Fig.2 allow for a qualitative comparison of the coil coverage. As expected, the BraCoil’s coverage is limited in head direction but yields high superficial signal with an intensity gradient towards the center of the phantom. For in vivo imaging, therefore, the prescan normalization option was set to “broadband” (highest correction). In vivo fetal TRUFI-MRI results in Fig.3 show that small structures in the liver, the lung and the femoral bone are clearly visible. In Fig.4, the isotropic motion-corrected super-resolution (0.89 mm) reconstruction results are presented which led to a detailed fetal model including brain (318 mm³), lung (85 mm³), liver (80 mm³), bladder (11 mm³), femoral bone and cartilage. Part of the fetal ankle bones, and upper limb humerus were also clearly reconstructed within this model. The amniotic fluid volume was measured to be 670 ml.

The reduced FOV in BraCoil acquisitions can be advantageous for sequence planning as there are less fold-in artifacts from other body regions and saturation bands are no longer required. On the other hand, reduced FOV can be a drawback in patients presenting with a posterior placenta and advanced gestational age. Regions more distant from the coil suffer from lower signal as the combined use of the spine coil with customer coils was not allowed. With a dedicated fetal MRI coil either wrapping around the pregnant abdomen or used in combination with the spine coil, and an optimized (larger) coil element size, higher SNR and larger penetration depth can be expected. This would allow for a more holistic assessment of fetus and placenta simultaneously. MRI protocol optimization will be greatly facilitated by the developed fetal phantom.

This work demonstrates the proof of concept of high-resolution fetal MRI in a comfortable lateral lying position using a wearable coil. In future work, a dedicated fetal coil will be developed based on learnings from more data acquired in pregnant women with varying gestational age.
Lena NOHAVA (Vienna, Austria), Rémi HATTAT, Juliette LEFEBVRE, Mbaimou Auxence NGREMMADJI, Marine BEAUMONT, Charline BERTHOLDT, Matthieu DAP, Olivier MOREL, Jacques FELBLINGER, Elmar LAISTLER, Bailiang CHEN
08:40 - 08:50 #46873 - PG017 Physically-Informed Deep Learning for Robust IVIM Quantification in Placental Diffusion MRI: Detecting Functional Alterations in Maternal Diabetes.
PG017 Physically-Informed Deep Learning for Robust IVIM Quantification in Placental Diffusion MRI: Detecting Functional Alterations in Maternal Diabetes.

Large-for-gestational-age (LGA) fetuses, commonly associated with maternal diabetes, are at increased risk for perinatal complications, including shoulder dystocia, neonatal hypoglycemia, and long-term metabolic dysfunction. Placental dysfunction is a key contributor to the pathophysiology of LGA and represents a valuable biomarker target for early risk stratification. Intravoxel incoherent motion (IVIM) analysis [1] of diffusion-weighted imaging (DWI) enables non-invasive estimation of microvascular perfusion and tissue diffusivity but suffers from limited reliability due to instability of the multi-parameter fitting process, particularly under clinically feasible acquisition schemes with sparse b-value sampling. This study investigates whether physically-primed deep neural networks that directly integrate b-value information into their architecture can better estimate placental IVIM parameters and improve sensitivity to disease-related changes in pregnancies affected by maternal diabetes.

Thirteen pregnant women were prospectively enrolled: five with uncontrolled maternal diabetes and eight healthy age-matched controls. MRI scans were performed on a 1.5T Philips Ingenia scanner (Philips Medical Systems, Best, The Netherlands) using a multi-channel abdominal coil. Placental diffusion-weighted images were acquired in the axial plane with a 2D spin-echo EPI sequence and fat suppression. Imaging parameters were as follows: repetition time (TR) = 4215 ms, echo time (TE) = 103 ms, slice thickness = 5.0 mm, inter-slice gap = 6.0 mm, in-plane resolution = 1.01 × 1.01 mm², and a 121 × 116 matrix. A total of nine b-values were used (0, 10, 20, 40, 80, 200, 400, 600, 1000 s/mm²), with a scan duration of ~531 seconds. No contrast agent was administered. IVIM parameters—including D (tissue diffusivity), D* (pseudo-diffusion coefficient, associated with perfusion), and f (perfusion fraction)—were estimated for each subject using three methods: (1) classical segmented least-squares fitting (SLS-TRF), and two physically-informed AI approaches, (2) SUPER-IVIM-DC [2] and (3) SUPER-IVIM-DC-BOOT. Both AI methods leverage physically-informed supervised learning to stabilize IVIM parameter estimation from limited b-value data: SUPER-IVIM-DC enforces data consistency during training, while SUPER-IVIM-DC-BOOT extends this framework by explicitly incorporating b-values into the model architecture [3] and employing bootstrap resampling to enhance robustness. Parameter values were extracted from the placental regions of interest and averaged per subject. Welch’s t-test evaluated group differences for each method and parameter.

The diabetic group was older on average than controls (35.5 ± 2.9 vs. 30.0 ± 5.5 years) and had slightly more advanced gestational ages at imaging (35.0 ± 2.8 vs. 30.3 ± 4.9 weeks). Classical IVIM analysis (SLS-TRF) did not identify significant differences between groups in any IVIM parameter. In contrast, the SUPER-IVIM-DC model revealed a significant reduction in the D parameter among diabetic pregnancies (0.001827 ± 0.000086 mm²/s) compared to controls (0.001997 ± 0.000136 mm²/s; p = 0.03997), suggesting restricted tissue diffusivity in placentas affected by maternal diabetes. The SUPER-IVIM-DC-BOOT model further demonstrated significant group differences in both D (0.001931 ± 0.000073 vs. 0.002043 ± 0.000104 mm²/s; p = 0.04365) and f (0.2896 ± 0.0428 vs. 0.3421 ± 0.0279; p = 0.0494), indicating impaired perfusion and diffusivity. D* did not differ significantly across methods.

This study highlights the limitations of classical IVIM modeling in detecting placental dysfunction using limited DWI data. Physically-primed AI models, SUPER-IVIM-DC and SUPER-IVIM-DC-BOOT, provided enhanced parameter stability and sensitivity to pathological changes in maternal diabetes. The consistent detection of altered D and f parameters with AI methods suggests that diabetes-related microstructural and microvascular alterations can be non-invasively detected via improved IVIM quantification. The bootstrap-enhanced variant (SUPER-IVIM-DC-BOOT) further improved robustness and highlighted perfusion impairments not captured by traditional methods.

Physically-informed AI models significantly outperform classical IVIM in detecting functional placental differences in LGA pregnancies associated with maternal diabetes. Their application enables more reliable extraction of diffusion and perfusion biomarkers from clinically practical DWI acquisitions. These methods hold promise for early, non-invasive identification of placental dysfunction in high-risk pregnancies and could facilitate personalized obstetric care.
Naama GAVRIELOV (Haifa, Israel), Moran GAWIE-ROTMAN, Abdel-Rauf ZEINA, Roni SHRETER, Esther MAOR-SAGIE, Rinat GABBAY-BENZIV, Moti FREIMAN
08:50 - 09:00 #47131 - PG018 Dynamic MRI assessment of functional and structural changes in the abdominal wall after hernia surgery.
PG018 Dynamic MRI assessment of functional and structural changes in the abdominal wall after hernia surgery.

Abdominal hernia is defined as a medical condition during which an internal organ or tissue protrudes through a weakness or defect in the abdominal wall muscles. This typically results in a visible bulge, which may increase in size when coughing or straining. As part of the surgical process, the surgeon pushes the herniated tissue back into its proper place and closes the gap in the abdominal wall through sutures. A synthetic mesh is generally placed over or under the weakened area to reinforce the abdominal wall and reduce the risk of recurrence. Despite advancements in surgical techniques, hernia repair surgery still faces significant challenges, particularly high recurrence rates reaching up to 70% [1]. This underscores the necessity for enhanced evaluation methods, especially for structural and functional outcomes. Dynamic magnetic resonance imaging (MRI) presents a non-invasive, non-irradiating tool that can be utilized to assess abdominal wall biomechanics both pre- and post-operatively.

Eleven patients scheduled for abdominal wall hernia repair volunteered to be included in the present study and to be MRI-scanned before and after surgery. Scans were acquired using a 3-Tesla MRI scanner (MAGNETOM Vida, Siemens Healthineers, Erlangen, Germany) while the patient was lying supine. Flexible RF coils were positioned on the top while bed-integrated coils were positioned on the bottom. Care was taken not to restrict abdominal movement. Static 3D MRI sequences were initially acquired so as to localize the ROI for the dynamic acquisitions. Axial and sagittal dynamic acquisitions (40 to 60s repetition) were then performed using a True FISP sequence over a 8 mm slice. Axial sequences were positioned pre-operatively at the largest hernia neck and post-operatively at matched locations. The sagittal plane was positioned at the midpoint of the hernia neck. Each subject completed three repeated tasks (deep breathing, coughing, and the Valsalva maneuver involving exhaling against closed mouth and nostrils for 8 seconds) following a brief training. Rectus abdominis and lateral muscles, linea alba, viscera area, and hernia sac were delineated as illustrated in Figure 1. The corresponding segmentations were used to compute abdominal displacement, strain, and shape variation.

The analysis of axial images illustrated that coughing produced a mean hernia sac area increase of 128.4± 199.2%. Post-surgery, the distance between the rectus abdominis (i.e., where umbilical hernias are located preoperatively) was reduced by 13 mm (p ≤ 0.05) and muscle elongation was observed. Post-operatively, rectus abdominis thickness changes during breathing were inversely correlated with pre-operative hernia defect width (p ≤0.05). The dynamic displacements of abdominal muscles are illustrated in Figure 2 for a pre-operative patient during the Valsalva maneuver. During the Valsalva exercise, the post-operative displacement of the lateral muscles was significantly larger in magnitude, indicating a greater inward movement, compared to the pre-operative displacement (p ≤ 0.05). For the rectus abdominis muscles, an almost significant increase in displacement was observed postoperatively during breathing (p = 0.09). Moreover, this displacement was negatively impacted by the size of the implanted mesh (p ≤0.05), indicating that larger mesh sizes were associated with reduced displacement of the rectus abdominis. Valsalva exercise led to comparable area changes in axial and sagittal planes (35 and 33.6% respectively). Regarding the results in the sagittal plane, the largest post-operative change in displacement (in magnitude, either positive or negative) was observed near the surgical region of linea alba (p = 0.07).

This investigation is the first to capture the real-time dynamics of the abdominal wall before and after hernia repair using dynamic MRI across two anatomical planes. Detailed in vivo visualization of the hernia sac, abdominal muscles, and viscera zone provided insights into post-operative functional restoration. While this approach enhances our understanding of biomechanical outcomes, the small sample size, patient variability, and absence of long-term follow-up limit the extrapolation of findings and clinical recommendations. Larger, longitudinal studies are needed to better define how these metrics could inform surgical strategies or predict recurrence.

Dynamic MRI reveals detailed biomechanical changes in the abdominal wall following hernia repair. This imaging approach may support personalized monitoring and risk assessment.
Victoria JOPPIN (Marseille, Switzerland), David BENDAHAN, Catherine MASSON, Thierry BEGE
09:00 - 09:10 #47377 - PG019 Microstructural evaluation of rectal cancer surgical specimens using high-resolution advanced diffusion MRI (dMRI) and histological correlation.
PG019 Microstructural evaluation of rectal cancer surgical specimens using high-resolution advanced diffusion MRI (dMRI) and histological correlation.

T2-weighted imaging is the clinical standard for staging and restaging rectal cancer after neoadjuvant therapy (NAT), but has limited ability to distinguish tumour from fibrosis [1,2]. Diffusion MRI (dMRI), which reflects tissue microstructure and cellularity, offers greater potential for assessing treatment response [3–5]. This study is the first to look at the diffusion and T2 characteristics of different parts of the rectal wall using detailed quantitative MRI of whole total mesorectal excision (TME) specimens post-NAT. We evaluated whether diffusion and relaxometry MRI can distinguish tumour, fibrosis, and rectal wall layers - mucosa, submucosa, and muscle - with the aim of improving clinical decision-making.

All experiments were approved by the institutional ethics committee. TME specimens from four patients with rectal cancer were collected post-NAT. After 36 h in 10% buffered formalin and 4 h in 1xPBS, samples were mounted in cylindrical containers filled with Fomblin and scanned on a 9.4T Bruker Biospec system at 22 °C (86 mm transmit/receive). Samples were pseudonymized by the Champalimaud Foundation Biobank (Figure 1). We acquired 2D DTI with TR/TE = 11000/24 ms, 130 slices, 140×130 matrix, 0.5 mm³ isotropic resolution, 2 b0 images, b-values of 1500 and 3000 s/mm², and 15 directions. A 2D MSME sequence (TR = 25000 ms, 8 TEs from 10–80 ms) was acquired with matching geometry. All scans used fat suppression. Figure 2 shows representative ex vivo MRI data from a TME specimen, including T2-weighted contrast, averaged b = 3000 s/mm² signal, fractional anisotropy (FA), and mean diffusivity (MD) maps. The specimen was cut into 5mm sections (grossing stage); selected areas were paraffin-embedded and H&E-stained. Slides were digitized using a Philips Ultra-Fast Scanner 1.6 and matched to MRI slices using grossing images. We mapped the diffusion and kurtosis tensor parameters voxelwise using a linear least squares (LLS) algorithm in Matlab. We obtained maps of FA, MD, axial diffusivity (AD), radial diffusivity (RD), mean kurtosis (MK), axial kurtosis (AK), and radial kurtosis (RK). Subsequently, T2 maps were derived from MSME data by voxelwise mono-exponential fitting across eight echo times (10–80 ms) in Matlab. Finally, regions of interest (ROIs) for mucosa, submucosa, muscle layers, tumour and fibrous tissue were defined manually on MRI following MRI-histopathology correlation. A pathologist (23 years’ experience) identified tissues on histology, aligned to MRI using morphological landmarks, and confirmed by a radiologist (13 years’ experience). Figure 3 shows ROI placement guided by histology and dMRI (top), and spatial correspondence between MR contrast and tissue architecture. Tumour invasion into muscle (yellow/orange arrows) appears on FA maps as localized reductions in anisotropy (bottom). To evaluate differences between mean values across six tissue types of each diffusion parameter and T2 map, we used a Linear Mixed-effects Model on RStudio (v-2024.12.1), with FDR correction for multiple comparisons.

Figure 4 demonstrates distinct diffusion and kurtosis profiles across rectal wall tissues, reflecting their unique microstructure. Muscle layers showed the highest FA, consistent with organized fiber orientation. Tumour and fibrous tissue also had elevated FA relative to mucosa. Tumour regions showed the lowest MD, indicating high cellularity, while fibrous tissue had higher MD. Kurtosis metrics (MK, AK) were highest in tumours, reflecting microstructural heterogeneity, and lower in fibrosis. T2 values showed limited contrast; mucosa and submucosa had slightly higher values, likely due to water content, but differences were minimal compared to diffusion metrics.

High-resolution ex vivo dMRI enabled detailed characterization of rectal wall microstructure. Diffusion metrics clearly differentiated mucosa, submucosa, muscle, tumour, and fibrosis. FA maps highlighted muscle architecture, MD distinguished tumour from fibrosis, and kurtosis captured tumour heterogeneity. These results matched histology and prior ex vivo studies [5]. Diffusion imaging outperformed T2 mapping in tissue discrimination and detecting tumour infiltration, which showed limited contrast. While high-field fixed-tissue imaging may differ from clinical settings, the findings highlight the superior value of dMRI - particularly FA and MD - for identifying fiber disruption and microstructural changes associated with tumour invasion.

Advanced diffusion MRI metrics (DTI and DKI) enhance tissue-specific characterization and more accurately detect tumour invasion into muscle layers, offering superior contrast and anatomical detail over T2 mapping for post-therapy assessment.
Ana FOUTO (Faro, Portugal), Mireia CASTILLO-MARTIN, Shermann MOREIRA, Noam SHEMESH, Laura FERNANDEZ, Hasti CALÁ, Nuno COUTO, Ignacio HERRANDO, Stephanie NOUGARET, Raluca POPITA, Jorge BRITO, Susana OURO, Miguel CHAMBEL, Nikos PAPANIKOLAU, Amjad PARVAIZ, Richard J. HEALD, Inês SANTIAGO, Andrada IANUS
09:10 - 09:20 #47815 - PG020 Bayesian multi-compartment analysis of transverse relaxation time and cellular proliferative activity in breast cancer on 3T.
PG020 Bayesian multi-compartment analysis of transverse relaxation time and cellular proliferative activity in breast cancer on 3T.

Precise estimation of cellular proliferative activity in breast cancer is central for monitoring the response to neoadjuvant therapy. The proliferative activity marker Ki-67 is widely used to inform prognosis, but relies on biopsy and provides limited spatial coverage [1, 2]. A non-invasive imaging biomarker that quantifies proliferative activity in the intra- and extra-cellular environments is hence highly desirable for treatment planning. Multi-compartment T₂ relaxation models are sensitive to compartment-specific microstructural properties of tissue, but are susceptible to noise [3, 4]. Recent Bayesian methods incorporate spatial priors across voxels to stabilise parameter estimation and enhance robustness under low SNR conditions [5]. We therefore hypothesise that intra- and extra-cellular T₂ from Bayesian model might provide a non-invasive, sensitive measure of proliferative activity, potentially offering an imaging biomarker for monitoring neoadjuvant therapy response.

We conducted a cross-sectional study on freshly excised tumour specimens from 20 patients (35 – 78 years) with invasive ductal carcinoma grades II (10) and III (10) (Figure 1). The study was approved by the North-West Greater Manchester East Research Ethics Committee (REC Reference: 16/NW/0221), with signed written informed consent obtained from participants prior to the study. Data Acquisition: Quantitative transverse relaxation mapping of tumour specimens were acquired on a 3T MRI scanner (Achieva TX, Philips Healthcare) using a 32-channel receiver coil. Images were acquired using a multishot gradient and spin echo (GRASE) sequence [6], with 24 echoes, time of echo (TE) from 13 ms to 312 ms, echo spacing of 13 ms, repetition time (TR) of 9943 ms, field of view (FOV) of 141 × 141 mm2 and image resolution of 2.2 × 2.2 x 2.2 mm3. Tumour cellular proliferative activity was evaluated using the Ki-67 index, with more than 14% of tumour cell nuclei staining positive above the background considered as high Ki-67 [7] (9 high, 11 low). Image Analysis: Voxel-wise overall T2time (T2, MONO) from single-compartment model was computed using a non-linear least squares method in MATLAB (R2023b, MathWorks Inc., Natick, USA). The intra- and extra-cellular T2 times (T2S and T2L) and volume ratio (f) were computed voxel-wise using the two-compartment model using a Bayesian algorithm [5]. Whole tumour delineation was performed on each specimen using MRIcron (v1.0.20190902, Colombia, USA) on conventional DWI images acquired at b = 800 s∙mm-2, with the necrotic regions excluded from the analysis. The parameters were computed as the mean within the whole tumour. Statistical Analysis: Statistical analysis was performed in the SPSS software 27.0 (IBM Corp, Armonk, NY, USA). Shapiro-Wilk test for normality was performed on all relaxation parameters. Independent sample t-tests were conducted to compare the relaxation properties between high and low proliferating tumours. Correlation tests were performed on the T2, MONO, T2S, T2L and f against tumour diameter. A p-value < 0.05 was considered statistically significant.

There was a significantly higher overall T2 time (p = 0.031) in high Ki-67 tumours (83.55 ± 7.38 ms) against low Ki-67 tumours (73.30 ± 11.30 ms) (Figure 2a, Table 1). There was a significantly higher intra-cellular T2 time (p = 0.047) in high Ki-67 tumours (73.52 ± 10.92 ms) against low Ki-67 tumours (61.30 ± 14.01 ms) (Figure 2b, Table 1). There was no significant difference in extra-cellular T2 time (p = 0.203) between high Ki-67 tumours (147.38 ± 8.84 ms) and low Ki-67 tumours (156.56 ± 19.16 ms) (Figure 2c, Table 1). There was no significant difference in volume ratio (p = 0.073) between high Ki-67 tumours (33.64 ± 8.33 %) and low Ki-67 tumours (41.65 ± 10.08 %) (Figure 2d, Table 1). There was a significant negative correlation in extra-cellular T2 time against tumour diameter (ρ = -0.50, p = 0.025, Figure 3a), however there were no significant correlations in the rest of the parameters against tumour diameter (Figure 3b-d, Table 1).

The elevated overall transverse relaxation time in high proliferating tumours suggests reduced signal dissipation, potentially due to the diluted biochemical environment [8] from enhanced angiogenesis [9]. Rapid cell divisions in high proliferating tumours demand an up-regulated transport of amino acids for nuclear biosynthesis in the nucleus [10], leading to the dilution of the intra-cellular environment, resulting in increased intra-cellular transverse relaxation time [11]. The negative correlation between extra-cellular transverse relaxation time and tumour diameter might be due to the increased cellularity and reduced extra-cellular free water in larger tumours [12].

Bayesian-derived intra-cellular transverse relaxation time is associated with proliferative activities in breast tumours, potentially serving as a non-invasive imaging marker for neoadjuvant treatment monitoring.
Kangwa NKONDE (Newcastle, United Kingdom), Sai Man CHEUNG, Nicholas SENN, Jiabao HE
09:20 - 09:30 #47939 - PG021 Deregulation of lipid composition in the breast of BRCA1/2 genetic mutation carriers using chemical shift-encoded imaging.
PG021 Deregulation of lipid composition in the breast of BRCA1/2 genetic mutation carriers using chemical shift-encoded imaging.

Breast cancer is a major and expanding health challenge, despite significant improvement in survival rate [1]. Genetic mutation carriers of BRCA1/2 have over 30% increased risk of developing breast cancer and receive annual surveillance using DCE-MRI [2]. DCE-MRI is sensitive to tumour angiogenesis, however detects malignancies that are well under development. Deregulation of lipid composition, including monounsaturated, polyunsaturated and saturated fatty acids (MUFA, PUFA, SFA), has been shown in the breast of BRCA1/2 carriers using single voxel spectral edited MRS [3], and in the peri-tumoural region in patients [4]. Novel chemical shift-encoded imaging (CSEI) allows rapid lipid composition mapping of the whole breast, and the spatial distribution may further distinguish the disease state. We therefore hypothesise that lipid composition in the breast of BRCA1/2 carriers show deviation from healthy controls but no difference from patients with breast cancer, and determine the repeatability of CSEI.

Eighty-two premenopausal female participants, 30 BRCA1/2 carriers (age 45.1±8.3 years), 37 patients with invasive ductal carcinoma (age 45.6±7.0 years) and 15 age-matched healthy controls (42.7±7.2 years) participated in the study. Patients with a tumour size larger than 1 cm and have not had hormonal therapy or chemotherapy were eligible. Participants with diabetes or on long-term medications that might alter lipid composition were not eligible. The study was approved by the East of England – Essex Research Ethics Committee (Reference: 22/EE/0020), and written informed consents were obtained from all the participants (Figure 1). Image Acquisition: All images were acquired on a 3 T whole-body clinical MRI scanner (Ingenia dStream, Philips Healthcare, Best, Netherlands). Lipid composition images were acquired from all participants using a 2D fast field echo sequence [5,6] with 16 echoes, initial echo time of 1.14 ms, echo spacing of 1.29 ms, repetition time of 60 ms, reconstruction voxel size of 2.0 × 2.0 mm2 and slice thickness of 3.0 mm, with subsequent repeated acquisition. Image Analysis: Image analysis was conducted in MATLAB (R2020a, MathWorks Inc., Natick, MA, USA). The maps of the number of double bonds in triglycerides were computed from raw data, before subsequent quantification of MUFA, PUFA and SFA as a fraction of total lipids [5,6]. The delineation of tumour was conducted on the first echo of magnitude image, with reference to dynamic contrast enhanced images. The whole breast in BRCA1/2 and controls, and the whole breast and the peri-tumoural region in patients were the four regions-of-interest. The whole breast was defined to contain only adipose and fibroglandular tissue in BRCA1/2 and controls, and excluding the tumour in patients. The peri-tumoural region was defined as an annular ring of 16 mm (8 voxels) around the tumour. The median lipid composition from the regions-of-interest was subsequently computed. Statistical Analysis: All statistical analysis was performed in the R software (v4.3.1, R Foundation for Statistical Computing, Vienna, Austria). Wilcoxon signed rank paired tests were performed for comparison of lipid composition in the whole breast and the peri-tumoural region in patients, with Wilcoxon rank sum tests performed between the whole breast of BRCA1/2, patients and controls. The within-subject coefficient of variation (%wCoV) was calculated as [standard deviation / mean] × 100%. A p-value <0.012 was considered to indicate a statistically significant difference for 4-group comparisons.

There was a significantly higher MUFA (p=0.01) and lower SFA (p=0.01) in the whole breast of BRCA1/2 compared to controls. There was no significant difference in PUFA (p=0.03) between BRCA1/2 and controls (Figure 2, Table 1). There was no significant difference in MUFA, PUFA and SFA in the whole breast of BRCA1/2 against the whole breast nor the peri-tumoural region of patients (Figure 2, Table 1). There was a significantly lower MUFA and PUFA (both p<0.01), and higher SFA (p<0.01) in the peri-tumoural region compared to the whole breast in patients. (Figure 2, Table 1). The %wCoV in all four regions-of-interest were below 10.0% (Figure 3).

Deregulation of lipid composition in the breast of BRCA1/2 carriers resembled the diseased group, serving as potential precursor of breast cancer. There was a decrease in MUFA and PUFA in the peri-tumoural region to support accelerated membrane synthesis for tumour growth [7], while an increase in SFA in the peri-tumoural region to avoid lipotoxicity and enhance chemoresistance [7]. CSEI has excellent repeatability in lipid composition

Lipid composition in BRCA1/2 carriers showed similarity to patients. CSEI has excellent repeatability for accurate measurement of lipid composition in the breast.
Sai Man CHEUNG (Newcastle upon Tyne, United Kingdom), Kwok-Shing CHAN, Senthil RAGUPATHY, Zosia MIEDZYBRODZKA, Jiabao HE
Auditorium 900

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B20
08:30 - 09:30

FT1-4 UNCONVENTIONAL SYSTEMS

Chairpersons: Maria Eugenia CALIGIURI (PhD) (Chairperson, Italy), Shaihan MALIK (Chairperson, London, United Kingdom)
FT1: Cycle of Technology
08:30 - 09:30 Low-field MRI. Joseba ALONSO (Scientist) (Keynote Speaker, Valencia, Spain)
08:30 - 09:30 MR-LINAC. Bas RAAYMAKERS (prof experimental clinical physics) (Keynote Speaker, Utrecht, The Netherlands)
08:30 - 09:30 MRI-PET. Alessandra BERTOLDO (Director) (Keynote Speaker, Padova, Italy)
Salle Major

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C20
08:30 - 09:30

FT3-3 QUALITY ASSESSMENT&CONTROL IN THE CLINICAL SETTING

Chairpersons: Amy MCDOWELL (Chairperson, London, United Kingdom), Ioannis TSOUGOS (PhD) (Chairperson, Greece, Greece)
FT3: Cycle of Quality
08:30 - 09:30 Beyond SNR - quantitative quality measures in advanced MR imaging. Simone BUSONI (Senior Medical Physicist) (Keynote Speaker, Firenze, Italy)
08:30 - 09:30 Quality aspects in remote scanning. Anton QUINSTEN (Keynote Speaker, Germany)
08:30 - 09:30 Workflow quality and operational efficiency in MR. Susie HUANG (Keynote Speaker, Boston, USA)
Espace Vieux-Port

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D20
08:30 - 09:30

GliMR

08:30 - 08:35 Welcome - Current status of GliMR. Esther WARNERT (Keynote Speaker, The Netherlands)
08:35 - 08:43 Lactate, glutathione and GABA measurements in metastasis using MEGA-sLASER at 3T. Andrei MANZHURTSEV (Keynote Speaker, Frankfurt/Main, Germany)
08:43 - 08:51 The Role of Diffusion-Weighted Imaging in Differentiating Pseudoprogression from Progression in Glioblastomas. Davide FREITAS (Radiographer) (Keynote Speaker, Porto, Portugal)
08:51 - 08:59 Combining multi-view object detection for improved brain tumor detection applied to flair mr images. Catarina SANTOS PALMEIRÃO (Keynote Speaker, Lisbon, Portugal)
08:59 - 09:07 Evaluation of quantitative serial MRI of glioblastoma patients treated with immunotherapy. Mihaela RATA (physicist) (Keynote Speaker, London, United Kingdom)
09:10 - 09:16 YIA1.
09:16 - 09:22 YIA2.
09:22 - 09:28 YIA3.
09:28 - 09:30 Determination of YIA winner. Vittorio STUMPO (Keynote Speaker, Zurich, Switzerland)
Salle 120

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E20
08:30 - 09:30

MS6 - MRI of Hypothalamus in eating disorders

Keynote Speakers: Stephanie BROWN (Keynote Speaker, Cambridge, United Kingdom), Coleen ROGER (Post-doctorante) (Keynote Speaker, Marseille, France), Alicia SICARDI (PhD Student) (Keynote Speaker, Lille, France)
Chairpersons: Stephanie BROWN (Chairperson, Cambridge, United Kingdom), Jean-Philippe RANJEVA (CNS team leader) (Chairperson, Marseille, France)
Salle 76
09:30 TIME FOR A BREAK - Coffee and refreshments will be available at the cash bar.
09:50

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A21
09:50 - 10:50

FT2 Plenary - Gained in translation
Adding value by crossing boundaries

Chairpersons: Frank KOBER (Chairperson, Marseille, France), Claudia LENZ (PhD) (Chairperson, Basel, Switzerland)
FT2: Cycle of Translation
09:50 - 10:50 The translation from postmortem to in vivo. Karla MILLER (Keynote Speaker, Oxford, United Kingdom)
09:50 - 10:50 Translational Cardiac Imaging at ultra-high field. Laura SCHREIBER (Chair, Department Head) (Keynote Speaker, Würzburg, Germany)
Auditorium 900
10:50 TIME FOR A BREAK - Coffee and refreshments will be available at the cash bar.
11:00

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A22
11:00 - 12:30

FT2-2 - Microstructure MRI

Chairpersons: Christian LANGKAMMER (PhD), Cristiana TISCA (Post-doctoral researcher) (Chairperson, Oxford, United Kingdom)
FT2: Cycle of Translation
11:00 - 12:30 Inhomogeneous MT (ihMT) and myelin. Olivier GIRARD (Ph.D.) (Keynote Speaker, Marseille, France)
11:00 - 12:30 Technical perspective on quantitative susceptibility mapping (QSM). Sina STRAUB (Senior Researcher) (Keynote Speaker, Bern, Switzerland)
11:00 - 12:30 White matter microstructure in the estimation of magnetic susceptibility. Anders Dyhr SANDGAARD (Postdoc) (Keynote Speaker, Aarhus, Denmark)
Auditorium 900

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B22
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ET2-2 - Navigating Anesthesia
Challenges, Safety Strategies, and Non sedation Innovative Techniques

Chairpersons: Alibhe DOHERTY (Chairperson, Dublin, Ireland), Claude PORTANIER MIFSUD (Masters) (Chairperson, Msida, Malta., Malta)
ET2: Cycle of Clinical Practice
11:00 - 12:30 Challenges and opportunities from the anesthesiologist's perspective. Pierre SIMEONE (Keynote Speaker, Marseille, France)
11:00 - 12:30 Different methods/techniques used to MR scan patients and avoid anesthesia. Darren HUDSON (Senior Lecturer) (Keynote Speaker, Exeter, United Kingdom)
11:00 - 12:30 MR Safety of anesthetized patients. Roger LÜCHINGER (Keynote Speaker, Zurich, Switzerland)
Salle Major

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C22
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FT3 LT - Optimization of MR acquisition & processing

Chairpersons: Martin SCHWARTZ (Chairperson, Tuebingen, Germany), Nikola STIKOV (Chairperson, Montreal, Canada)
FT3: Cycle of Quality
11:00 - 11:02 #47566 - PG115 The Hidden Bias in Diffusion MRI: Effect of Inaccurate b-values from Imaging Gradients on Intravoxel Incoherent Motion.
PG115 The Hidden Bias in Diffusion MRI: Effect of Inaccurate b-values from Imaging Gradients on Intravoxel Incoherent Motion.

The effect of imaging gradients on b-values is an often-neglected bias in DWI. Imaging gradients can both increase and decrease the desired b-value [1], an effect which is not apparent in the metadata of DWI from clinical scanners. Typically, b-values are calculated using the classical formula b=γ^2 g^2 δ^2 (∆-δ/3). However, this formula only accounts for the diffusion weighting caused by diffusion encoding gradients and assumes zero contributions from imaging gradients. The actual diffusion weighting from a pulse sequence is calculated by including all of the gradients as follows [1]: B=∫_0^TE q(t)⊗q(t)dt, (1) where B is the b-tensor, and q(t)=γ∫g(t)dt, where g(t) is the effective gradient amplitudes as a function of time for the entire pulse sequence, which includes the inversion after the refocusing RF pulse. The b-value is given by the trace of the b-tensor, i.e. b = tr(B). This discrepancy may be negligible in the context of other DWI applications, but has to our knowledge not been investigated for intravoxel incoherent motion (IVIM) analysis. IVIM typically employs b-values below 200 s/mm2, which may be more affected by imaging gradients [2]. The aim of this study is to investigate the effects of biased b-values on IVIM parameter estimates.

We investigated the propagated bias to IVIM parameters both in simulations and in vivo. Two pulse sequences based on DWI sequences from two major MR vendors were simulated: one with large cross-term interactions between imaging and diffusion gradients, and one with minimal cross-terms (Figure 1). The actual b-values from an extensive set of 34 nominal b-values were calculated from simulations of various in-plane resolutions and slice thicknesses, and IVIM parameters estimated using a single-step NLLS fitting algorithm without noise with a range of different ground-truth values of the perfusion fraction f, pseudo-diffusivity D*, and diffusivity D. A prostate dataset with 15 exams was used for in vivo evaluation. Data was acquired on a 3T Signa Architect (GE Healthcare, Milwaukee, WI, USA) with a Stejskal-Tanner pulsed gradient spin echo sequence. Reduced axial FOV with spatially selective excitation and CHESS fat saturation were used. Matrix size 160×80, in-plane resolution 1.5×1.5 mm2, slice thickness 3 mm, with TE 69.2 ms, and TR 5000 ms. Nominal b-values 50, 200, 800 s/mm2 were acquired in three directions with 5 repetitions each, including a nominal b0 with 15 repetitions. The actual b-values were calculated by recording the gradient waveforms for each shot of the pulse sequence. IVIM parameters were estimated using a typical segmented fitting approach with the b-value threshold set at 200 s/mm2 [3].

A notable variation in signal curves was observed between the two simulated pulse sequence designs (Figure 1). The sequence with large cross-terms showed a wider range of b-value variations across diffusion direction. This was also reflected in the estimated IVIM parameters (Figure 2). When using the nominal b-values, the bias in estimated f could be both positive and negative, while D* and D were consistently overestimated. Additionally, the bias decreased with the image resolution. Similar inaccuracies were observed in the in vivo dataset. The actual b-values differed from the nominal by approximately 6% (Table 1). Figure 3 shows that f was underestimated by 0.7% (absolute percentage points), while D* and D were overestimated by 0.8 µm2/ms and 0.07 µm2/ms respectively.

The simulations demonstrated that pulse sequence design plays an important role in the resulting actual b-values. This is problematic, since pulse sequence design may vary between commercial and research implementations of what can be considered a “standard” pulsed gradient spin echo sequence for DWI. This experimental variability underscores the need of using accurately determined b-values to ensure comparability of results across studies. The in vivo analysis confirms that nominal b-values recorded in the DICOM metadata do not reflect the true diffusion weighting, as evident by the discrepancies between the nominal and actual b-values, and their impact on parameter estimates. In our dataset, actual b-values were generally higher than the nominal, whereas a previously published work demonstrated 6-15% lower b-values than expected [4], likely due to a different pulse sequence design.

Neglecting imaging gradients in when calculating b-values leads to distorted and unpredictable systematic errors in IVIM results, and is not apparent to the users. The bias depends on pulse sequence design and imaging protocols, leading to substantial variations across studies and clinical implementations. Our findings reveal a need for data harmonization in future IVIM works to make results more comparable and reproducible.
Ivan A. RASHID (Lund, Sweden), Filip SZCZEPANKIEWICZ, Adalsteinn GUNNLAUGSSON, Lars E. OLSSON, Patrik BRYNOLFSSON
11:02 - 11:04 #47902 - PG116 Faster multi-parameter mapping via combined sensitivity estimation and inter-scan motion correction.
PG116 Faster multi-parameter mapping via combined sensitivity estimation and inter-scan motion correction.

Inter-scan motion causes error in quantitative MRI (qMRI) if the receive coil sensitivity modulation is assumed consistent across volumes. Rapid, low resolution, calibration data (‘s-maps’) acquired prior to each volume can mitigate these [1] by removing relative sensitivity modulation across positions. qMRI protocols typically use parallel imaging to ensure feasible scan times, high spatial resolution and whole brain coverage. Here, using a common qMRI protocol, Multi-Parameter Mapping (MPM), we use s-maps to both unfold and correct inter-scan motion artefacts in magnetisation transfer saturation (MTsat) maps [2], which rely on the combination of three distinct volumes. We further demonstrate that care must be taken to ensure data are handled consistently, e.g. when pre-whitening or combining images across coils.

An MPM protocol (Fig.1) was acquired at 7T 3 times, twice in position 1 (scan/rescan) with no intentional motion, and a third time in position 2 following large, intentional motion. Combining data within positions provides a reference against which to assess the effect of inter-scan motion introduced when data are combined across positions. Conventionally, integrated reference data, i.e. a central fully sampled portion of k-space within the accelerated volumes, are used to unfold the accelerated MPM volumes. MORSE-CODE [3], a fast and robust regularised SENSE [4] image reconstruction formalism, used coil sensitivities estimated either from these integrated data or the s-map data. Signal-to-noise can be improved by using noise calibration data to estimate the coil covariance and whiten the data prior to unfolding. Noise estimates are acquired as part of each acquisition, i.e. independently for the s-map and under-sampled data. We investigated the impact on image quality of using acquisition-specific (inconsistent) or consistent noise estimates. We also investigated the impact of combining the individual channel data of the s-map acquisition as root-sum-of-square (RSOS, default on the scanner host) or via sensitivity-weighted combination consistent with the MORSE-CODE unfolding scheme. Quantitative parameter maps were estimated using the h-MRI toolbox [5]. The scan-rescan estimates from position 1 were used to assess the image reconstruction performance. A coefficient of variance (CoV) measure was computed as the difference between the scan/rescan MTsat estimates with respect to their mean at each voxel within a grey and white matter mask. Data were combined across positions (PD- and T1-weighted from position 1 with MT-weighted from position 2) to manifest inter-scan motion artefacts in an MTsat map. MTsat maps were estimated with no inter-scan motion correction, and again with inter-scan motion correction using either the RSOS or sensitivity-weighted MTsat maps. CoV was again computed, now as the difference between these maps (with/without motion correction) and a reference MTsat map computed at position 2.

The participant moved approximately 20 degrees about the z-axis between positions. Whitening using acquisition-specific noise estimates led to visible aliasing artefact after unfolding (Fig. 2). When whitened consistently, the integrated reference or s-map sensitivities unfolded images with equivalent quality. Any residual artefacts did not propagate to the estimated parameter maps (c.f. MTsat map, Fig. 2). CoV estimates showed scan-rescan reproducibility was equivalent (Fig. 3) as long as consistently whitened. As expected, inter-scan motion led to substantial artefact in the MTsat map (Fig. 4), and was reduced by the established correction scheme. Neither coil combination approach fully removed the artefact but CoV analysis showed that the sensitivity-weighted coil combination agreed best with the reference MTsat map (Fig. 4).

qMRI protocols often rely on calibration data. Here we show that calibration data used for inter-scan motion correction can additionally be used to estimate sensitivities needed to unfold accelerated datasets. Protocols that utilise multi-echo readouts and estimate sensitivities from integrated reference data will particularly gain from this approach since the single echo nature of the ‘s-map’ data enables a much shorter TR than integrated reference data. However, care must be taken to whiten the data consistently. Temporal, heating or motion effects modestly influence the noise covariance but the resulting whitening matrix can substantially alter the sensitivities leading to residual artefacts if inconsistent with the data they are used to unfold. Using a consistent coil-combination approach for the calibration and target data also improves the quality of the inter-scan motion correction scheme. However, residual effects such as position-specific transmit fields remain uncorrected.

qMRI protocols can be made more efficient, without degrading reproducibility, by replacing integrated reference data with ‘s-map’ data used to correct inter-scan motion.
Benjamin JAMES (London, United Kingdom), Barbara DYMERSKA, Martina CALLAGHAN
11:04 - 11:06 #47049 - PG117 Susceptibility-weighted MRI with optimized phase mask for central vein sign detection in the spinal cord at 7T.
PG117 Susceptibility-weighted MRI with optimized phase mask for central vein sign detection in the spinal cord at 7T.

Susceptibility-weighted imaging (SWI) has shown great potential in the brain to identify the central vein sign (CVS), which refers to the presence of a vein within multiple sclerosis (MS) lesion and was shown to be a specific marker of this pathology [1]. This biomarker was recently added to the clinical recommendations for MS diagnosis for brain MRI [2]. Its role and presence in the spinal cord was reported in ex vivo studies [3] but was, however, poorly determined in the spinal cord where visualization is made difficult by the small size of the veins [4]. Indeed, anisotropic resolutions typically used in the cord lead to large partial volume effects, as the volume of the vein only represents less than 20% of the total voxel volume, whereas it can reach 100% in the brain (Table 1). In order to remove this obstacle, this study introduces an optimization of the SWI phase mask to isolate contributions linked to the presence of veins with orientations and sizes [1] representative of those expected in MS patients with spinal cord lesions. The proposed SWI post-processing was applied to detect CVS in the spinal cord.

*MRI data: A retrospective analysis was performed on multi-slice multi-angle axial 2D T2* multi-echo gradient-echo [5] data, acquired at the cervical level on a 7T Magnetom (Siemens Healthcare, Erlangen, Germany) on 13 MS patients, with measured angles between the slice and z-axis between -36° to 18°, and sequence parameters: FA = 50°, 2 averages and two different spatial resolutions: - 0.18 x 0.18 x 2 mm3: TE = 5.2, 9.43, 13.66, 17.89 ms / TR = 500, TA = 10 min 26 s - 0.27 x 0.27 x 2.5 mm3: TE = 5.02, 9.01, 13 ms / TR = 565, TA = 6 min 36 s *Theory of phase calculation in the presence of a vein: The intra- (ΔφIV) and extravascular (ΔφEV) phase contributions of a voxel containing a vein [4] were calculated according to: ΔφIV = -2π γ Δχ B0 . (cos²θ - 1/3).TE , and ΔφEV = -2π γ Δχ B0 . sin²⁡θ . cos⁡2ψ . (R0⁄r)² . TE with Δχ: difference in susceptibility between the deoxygenated blood and the lesion; θ: angle between the vein orientation (of radius R0) and B0; ψ: angle between B0 and the projection of a vector indicating the position of a point in the extravascular space in a plane perpendicular to the vein; r: distance between this same point and the vein center. *Phase mask optimization for CVS identification: 1) Calculation of ΔφIV and ΔφEV for TE, voxel dimensions and orientations corresponding to in vivo GRE acquisitions (0 to 15° relative to the B0-field, which are the most common orientations), as well as: vein diameter = 0.3 à 0.5 mm; variation of vein position within the voxel; θ = 45° to 135° to enhance vessels visible over multiple voxels. 2) Post-processing of the SWI to attenuate the signal from voxels with these phases in the spinal cord, using the CLEAR-SWI toolbox [6]. 3) Inspection of lesions identified by neuroradiologists [7] after application of the phase filter and counting of lesions with CVS.

Figure 1 shows histograms of the calculated phases of voxels containing a vein with all possible configurations of parameters described in Methods. Results reveal how vein positions and voxel dimensions have a substantial impact on phase signal. For (A) and (B), all phases are within the range [-0.55:0.1] and [-0.25:0.05] radians, respectively, allowing to use band-pass filtering of the phase in the SWI post-processing. Figure 2 shows the post-processing steps of the proposed SWI method, displaying the SWI as well as the phase mask at different steps. By applying phase masks only to spinal cord voxels with the calculated phases, and in groups of 4 or more adjacent voxels, indications of the presence of medullary veins were observed. The blue arrow shows an indication of CVS in a spinal cord lesion which was not observed in the T2* GRE and was surrounded by noisy signal with ‘brain-like’ processing. Figure 3 shows examples of healthy control and a representative MS patients T2* GRE and after using the proposed optimized SWI processing. A strong attenuation is observed due to voxels containing veins, with a distribution similar to expected vasculature [8]. In particular, radial veins and a venous ring at the surface of the cord can be observed in some slices. Of the 75 lesions identified by experienced neuroradiologists, 43% showed indications of CVS (blue arrow in Figure 3), which is close to the proportion observed in the brain [1].

The observation of CVS in the spinal cord opens up diagnostic and prognostic perspectives. The small veins present in the spinal cord require different processing than in the brain to isolate their phase contributions without enhancing noise, which would be the case with typical SWI processing. Further work will include a larger cohort and reproducibility evaluations. Similar optimizations may be required for other resolutions and applications (such as brain), in order to isolate voxels of interest in the presence of veins that are smaller than the voxel size.
Aurelien DESTRUEL (Marseille), Sarah DEMORTIERE, Maxime GUYE, Jean PELLETIER, Virginie CALLOT
11:06 - 11:08 #46387 - PG118 FLAIR with robust CSF suppression by optimal control.
PG118 FLAIR with robust CSF suppression by optimal control.

Fluid-attenuated inversion recovery (FLAIR) [1-4] is an essential component of routine brain MRI protocols [5], characterized by the suppression of cerebrospinal fluid (CSF) using an inversion pulse. However, when the inversion is imperfect, residual bright signal from poorly inverted magnetization can appear in the final images, potentially mimicking or obscuring pathology. Artifacts are particularly common in regions affected by strong inhomogeneities in either the RF or B0 field. RF inhomogeneities often occur at the edges of the field of view, while B0-inhomogeneities are prominent near air-tissue and bone-tissue interfaces. Both effects are more severe at higher field strengths. Adiabatic pulses [6], routinely used in clinical FLAIR protocols for magnetization inversion, provide robustness against RF field inhomogeneities by design, once the RF amplitude exceeds the adiabatic threshold. Inversion capability in the presence of off-resonance is characterized by the bandwidth of the pulse. However, the drawback is a usually prolonged pulse duration. The aim of our study was to improve the robustness of FLAIR against both RF and B0 inhomogeneities by applying robust inversion pulses designed by time-optimal control.

Pulse Optimization: The FLAIR inversion pulse was optimized for time efficiency and robustness to B0 and B1 inhomogeneities using ensemble-based time-optimal control [6]. The constraints included: - Non-selective inversion targeting Md=(0,0,-1). - B0 robustness for ±2.4 ppm at 3T. - B1 robustness for 80% to 115% of nominal RF amplitude, with a max RF amplitude of 20 μT (handled as box constraint). - Time discretization of 0.01 ms. - Initial random amplitude and phase over 10 ms. The Bloch equations were solved using symmetric operator splitting [7], and gradient calculations employed adjoint calculus [8]. The final optimized RF pulse had a duration of 2.01 ms and was integrated into the FLAIR sequence without altering other parameters. Data Acquisition: Scans were conducted on a 3T Philips Elition MRI with a 32-channel SENSE head coil. The study was approved by the Clinical Research Ethics Board, and informed consent was obtained from all participants. Phantom Scans: A cylindrical phantom (13 cm diameter, 17 cm length) with a smaller cylinder (1.5 cm diameter, 9.5 cm length) filled with 0.05 mmol/ml gadolinium solution was used. The smaller cylinder was oriented perpendicular to B0 to induce field inhomogeneities. In Vivo Scans: Standard FLAIR and robust FLAIR scans were compared in three healthy participants. Imaging parameters were sagittal 3D with TI/TR = 2400/8000 ms, voxel size 1.2 × 1.2 × 1.2 mm³, reconstructed to 0.67 × 0.67 × 0.67 mm³, and a field of view of 256 × 256 × 170 mm³. The only difference between the scans was the inversion pulse: a 17.16 ms hyperbolic secant for the conventional FLAIR, as used within the clinical protocol, and the optimal control pulse with a duration of 2.01 ms for robust FLAIR. CSF suppression was assessed visually.

Fig. 1 illustrates the inversion efficiency across a range of B0 inhomogeneities and RF amplitudes. The adiabatic pulse maintains an efficiency of approximately 0.9 for B0 inhomogeneities between -2.4 and +2.4 ppm, but its efficiency drops rapidly outside this range. In contrast, the robust pulse achieves nearly perfect inversion (close to 1) over a broader range of B0. Additionally, it is less sensitive to reduced RF amplitudes, maintaining nearly perfect inversion even at 70% of the nominal RF amplitude. In phantom scans, using the adiabatic pulse, regions of strong B0 inhomogeneities show inadequate inversion, leading to bright signal artifacts (Fig. 2, top). In contrast, FLAIR with the robust pulse show perfect inversion throughout the entire phantom, with dark areas near the Gd-filled cylinder due to very short T2 relaxation times in those regions (Fig. 2, bottom). In human volunteers, the standard adiabatic inversion pulse leads to bright signal artifacts at the base of the frontal lobes, a region known for strong B0 inhomogeneities (Fig. 3). The robust pulse significantly reduces these artifacts compared to the conventional scan.

FLAIR is critical for detecting brain pathologies such as tumors, infections, trauma, and MS, but remains prone to artifacts near the skull base and from implants. These distortions often obscure clinical findings. While parallel transmission reduces RF inhomogeneities, B0-related artifacts persist despite advanced shimming techniques. The proposed optimal control inversion pulse addresses this by offering robustness to both B0 and B1 inhomogeneities, without requiring patient-specific mapping or additional scan time.

The optimized pulse eliminates artifacts without changes to hardware or acquisition protocols, enabling seamless clinical integration. Though demonstrated at 3T, the design can be readily adapted to other field strengths.
Christina GRAF (Vancouver, Canada), Alexander JAFFRAY, Armin RUND, Stefan STEINERBERGER, David LI, Alexander RAUSCHER
11:08 - 11:10 #46708 - PG119 Simulation of dynamic B0 with Phase Distribution Graphs.
PG119 Simulation of dynamic B0 with Phase Distribution Graphs.

MRI simulations are valuable tools for developing new sequences, understanding imaging mechanisms, optimizing parameters, generating machine learning training data and more. These simulations typically assume constant physical properties of the simulated tissues. This does not fully describe clinical measurements where these properties can change, especially due to movement. One of the most noticeable effects is a varying magnetic field, influenced by the breathing of the subject. The resulting fluctuations can be measured even in neuroradiological imaging. In this work we derive the necessary theory and implement a simulation of dynamic B0, with the goal of moving even closer to in-vivo measurements.

With this work we strive to extend our simulation based on Phase Distribution Graphs[1], which currently is the fastest existing simulation for physically accurate simulation of imaging sequences. It is part of MR-zero[2] and recently has gained the capability of simulating motion[3]. Due to changes in the spatial distribution of susceptibility, motion can influence the homogeneity of the magnetic fields, especially the main magnetic field B0. This can in turn affect measurements even in the brain and introduce artifacts in long measurement series. To accelerate the simulation of dynamically changing B0, we analytically derived the accumulated phase that results from B0 inhomogeneities. This is done by defining B0 at fixed time points as input maps and applying closed-form equations for the resulting phase, which in turn is included in the signal equation. Further integration into the simulation also ensures correct interaction with RF pulses for a complete physical model of the magnetization dynamics. The influence of dynamic B0 is examined with the simulation of a balanced SSFP and a FLASH sequence. First, 120 B0 maps during multiple breathing cycles were measured using the DREAM[4] sequence. They were then combined with a quantified[5] phantom to complete the simulation data. With this data, two simulations were computed: 1. A bSSFP with 50° pulses, 10 ms repetition time, alternating RF pulse phases and an α/2 preparation pulse. 2. A 7° FLASH sequence with a repetition time of 20 ms and quadratic RF phase increment of 84°. Both sequences have centric phase encoding reordering and a resolution of 64×64, while the simulation internally runs at a higher resolution of 96×96. The resulting signals were reconstructed into images using a simple Fourier transform. Both sequences were simulated twice, once with the dynamically changing B0 and once with the average, static B0 that was acquired during quantification. To amplify the effects of dynamic B0 for visualization purposes, the breathing cycle was accelerated such that its first half of fully breathing in was completed in the time of the acquisition of each sequence.

The overall B0 map is shown in Figure 1. It is relatively with a standard deviation of 15 Hz. Compared to it, the fluctuations in the dynamic B0 maps are low. In figure 2, they are shown relative to the average B0. They deviate from it in the range of ±6 Hz. The deviation is mostly but not fully homogeneous, meaning that not only the amplitude but also the shape of B0 changes throughout a breathing cycle. Comparing the simulation of the FLASH sequence between static and dynamic B0 shows a different phase, which is due to the different B0 inhomogeneities during acquisition. Figure 3 shows no higher order effects, which can be a result of the interaction between accumulated phase and RF pulse, are not visible. FLASH sequences measure mostly newly excited magnetization, which has a trivial dependency on B0 inhomogeneities. In Figure 4, a different picture emerges. The simulated bSSFP sequences produces an image which is the combination of many different magnetization pathways. As an RF pulse can excite and refocus at the same time, these pathways all accumulate the phase of B0 inhomogeneities in different ways. In combination with dynamically changing B0, this leads to more complex artifacts. The result are different ringing patterns in the reconstructed image. In addition, the phase of bSSFP images is expected to be close to zero through the interference of excited and refocused magnetization pathways. With dynamic B0, refocusing must not completely revert the phase of magnetization and the deviations can be larger.

We introduced analytical dynamic B0 to our state-of-the-art MRI simulation. We demonstrated the influence of B0 on FLASH and bSSFP brain measurements. Although small, noticeable changes to the resulting contrasts could be detected. Measurements that rely on spin echoes and similar mechanisms will show more complex dependencies on the varying B0 inhomogeneities than others.

With the introduction of dynamic B0, the accuracy of the simulation could be improved substantially. This can be used for better understanding of artifacts in time-series acquisitions or long measurements.
Jonathan ENDRES (Erlangen, Germany), Simon WEINMÜLLER, Moritz ZAISS
11:10 - 11:12 #47703 - PG120 3D printing of subject-specific passive shims to improve MRI for in vivo subjects.
PG120 3D printing of subject-specific passive shims to improve MRI for in vivo subjects.

Magnetic resonance imaging (MRI) relies on a homogeneous magnetic field (B0) for optimal image quality. Although MRI scanners are designed for inherent field uniformity, patient-specific anatomical variations and medical implants introduce local B0 inhomogeneities, which degrade imaging performance [1-4]. To counteract these inhomogeneities, B0 can be adjusted, or "shimmed", for greater uniformity. Active shimming involves applying electric current through dedicated coils to adjust the B0 field, typically addressing up to the second order of field inhomogeneities. However, subject-specific anatomies introduce complex distortions that challenge conventional active shimming. Moreover, higher order shim solutions can interfere with MRI equipment and require custom hardware [5-8]. Passive shimming strategically places magnetizable materials (e.g., ferromagnetic, diamagnetic) to enhance field uniformity [9]. However, the use of passive shimming to correct subject-induced B0 variations has not been widely adopted due to its labor intensity, high costs, and challenges associated with higher order field distortions [10-12]. This research introduces an innovative 3D printing technology to produce customized passive shims aimed at correcting field inhomogeneities induced in vivo by specimens. Unlike conventional methods, our powder-binder jetting technology enables the efficient production of shims with complex geometries without additional costs or extended production times by allowing precise deposition of ferromagnetic material, generating higher order spherical harmonic terms to optimize B0 homogeneity (Fig. 1) [13].

Simulations and Scan: Field maps of female Fischer rats were acquired on a 9.4T animal MRI scanner (Fig. 2A, B). These maps served as input for a custom-developed shimming algorithm (MATLAB) designed to minimize the standard deviation of B0 by employing the MEIGO global optimization toolbox [14]. Fmincon functioned as the local solver to tackle the nonlinear optimization problem: Std= √(1/(N-1) ∑|(A*ink+unshimmed_vec )-µ|² ) (Eq. 1) with µ= 1/N ∑(A*ink+unshimmed_vec) (Eq. 2), where unshimmed_vec is the unshimmed field map converted to a vector, A is the sensitivity matrix describing the influence of each voxel, N is the number of voxels and ink is the concentration of ferromagnetic ink. The concentration in each voxel to achieve optimal homogeneity is calculated and converted into a grayscale printable CAD design. 3D printing: The design was fabricated via a modified powder-binder 3D printer. The primary build material was polymethyl methacrylate powder. Thermal printheads were employed for the ferromagnetic ink (containing magnetite nanoparticles at 30 wt%) and the binder ink (2:1 volume mixture of acetophenone and butanone). The 3D-printed shim was scanned via a Phoenix Nanotom (CT). The reconstruction was performed with Phoenix datos|x with subsequent image processing in Avizo 2019.1 (Fig. 2C).

Simulations and Scan: Simulations were performed for the brain as a region of interest. The standard deviations of both unshimmed and shimmed fields were compared. The results of the simulation demonstrated a potential improvement of 29% in B0 field homogeneity (Fig. 3A). After printing and measuring the field maps with and without shim, an actual improvement of 21% in standard deviation was observed (Fig. 3B). This difference may arise from several factors: 1. Positioning variability: Misalignments between the shim and the rat during MRI scanning might reduce shimming efficacy. This could potentially affect the correction for higher order inhomogeneities, but can be avoided in future measurements by 3D printing a holder for the shim. 2. Printing imperfections: Slight deviations in ferromagnetic ink deposition (e.g., droplet spread or inhomogeneous nanoparticle distribution) could affect the shim’s magnetic properties. This deviation is an inherent characteristic of the 3D printer and cannot be accounted for in the simulations. 3. Scanning: Noise in MRI field maps may introduce small variations in quantifying the field difference. This can be minimized by increasing the resolution or the number of scan averages. 3D printing: It is essential to accurately control the amount and positioning of printed ferromagnetic ink. The ferromagnetic ink distribution within printed shims was visualized for voxels of 1 mm³ to verify this precision. The average measured dimensions in the x-direction were 0.97 mm ± 0.08 mm and 0.98 mm ± 0.08 mm in the y-direction. The analysis confirmed dimensional inaccuracies below a 10 µm threshold, with the resolution set to 300 µm in the x/y-directions and 100 µm in the z-direction (print layer height) [13].

Our results prove that 3D printed passive shims can effectively homogenize the magnetic field in a scanner for in vivo species. Future research will focus on testing the technique on larger specimens (e.g., monkeys, dogs) with complex anatomical structures to further evaluate its efficacy.
An VANDUFFEL (Leuven, Belgium), Hanne VANDUFFEL, Cesar PARRA CABRERA, Błażejczyk KASIA, Shannon HELSPER, Quentin GOUDARD, Uwe HIMMELREICH, Dimitrios SAKELLARIOU, Rob AMELOOT
11:12 - 11:14 #47363 - PG121 Relaxivity of gadolinium-based contrast agents in cerebrospinal fluid at 3T.
PG121 Relaxivity of gadolinium-based contrast agents in cerebrospinal fluid at 3T.

Interest in cerebrospinal fluid (CSF)-flow and distribution has grown with the proposed glymphatic system, a potential brain waste clearance system [1]. In this context, T1-mapping before and after intrathecal injection of a gadolinium-based contrast agent (GBCA) has been used to study the flow of CSF [2]. Repeated T1-mapping enables quantification of gadolinium (Gd) concentrations in CSF and brain tissue [2], allowing modeling of the glymphatic flow. However, accurate quantification of the Gd concentration depends on the relaxivity of the GBCA. The relaxivity of a GBCA is dependent on temperature, magnetic field strength and medium it is measured in, but has never been estimated in CSF. The aim of this study was to estimate the T1-relaxivity of two GBCAs in CSF at 3T. For comparability with previous studies, due to their similar properties, we also estimated the T1-relaxivity in an isotonic solution.

Using a phantom model (figure 1), we calculated the relaxivity of the two GBCAs gadobutrol (GADOVIST® Bayer Pharma) and gadoteric acid (DOTAREM®, Guerbet) in both CSF and an isotonic solution (Ringer-Acetat Baxter Viaflo, Baxter). CSF was acquired from patients investigated for idiopathic normal pressure hydrocephalus. CSF-samples were discarded if albumin, erythrocytes or cell counts were outside the reference value. The CSF used in the phantom experiment were a mix of equal portions from different subjects. CSF and isotonic solution were diluted with either gadobutrol or gadoteric acid to eight Gd concentrations between 0-1mM. For comparability, both GBCAs in both mediums were scanned simultaneously. To account for T1 variability with temperature, the phantom was insulated in Styrofoam and heated to 37.5 °C before the scan, with temperature measured during the scan. Phantom measurements were done on a 3T MRI (Signa Premier; GE Healthcare) with a 48-channel head coil. T1-mapping was performed using the variable flip angle method [3], acquired with a 3D fast spoiled gradient echo sequence with isotropic acquisition of 1 mm, 100 slices, field of view 256x256, TR=7.2, TE 2.9, flip angles α1=2°, α2=12°, α3=7°, α4=16°, α5=20°. B1-mapping was performed using the Bloch-Siegert shift approach [4]. T1-maps were generated per voxel using a nonlinear least squares approach optimized using the Levenberg-Marquardt method. The relaxivity was estimated from the slope of the linear regression between the relaxation rate (1/T1) and the Gd concentration, with errors presented as the standard error of the coefficient. All relaxivity values are given in unit of L mmol-1s-1. Differences in relaxivity between the CSF and isotonic solution was tested with a regression model, including interaction terms for the slope and intercept between CSF and the isotonic solution. A p-value of < 0.05 was considered statistically significant.

The relaxation times for the 0 mM Gd samples were 4506 ms for CSF and 4385 ms for the isotonic solution. The linear regressions used for the relaxivity estimations are presented in figure 2. The relaxivity of gadobutrol was 3.98 ± 0.16 in CSF and 2.95 ± 0.12 in the isotonic solution (p<0.001). For gadoteric acid the corresponding values were 2.88 ± 0.11 in CSF and 2.78 ± 0.08 in the isotonic solution (p=0.49). The mean temperature during the scan was 37.4 (range 37.1- 37.6) °C.

We present the T1-relaxivity in CSF and an isotonic solution for two GBCAs in a physiological temperature at 3T. Our results show that the relaxivity in CSF differ from an isotonic solution for gadobutrol but not for gadoteric acid. This difference is of importance to note for future research on the glymphatic system utilizing T1-mapping. No previous study has measured the T1 relaxation time of CSF in vitro. The T1 relaxation time in water has previously been measured to 4420 ± 103 ms [5], closely resembling our measure of 4385ms in the isotonic solution. The relaxivity in water has previously been estimated to 3.2 ± 0.3 and 3.3 ± 0.2 for gadobutrol [5, 6] and 2.8 ± 0.2 for gadoteric acid [6], both being near our relaxivity estimates of 2.95 ± 0.12 and 2.78 ± 0.08, for gadobutrol and gadoteric acid respectively in the isotonic solution. Our isotonic solution results thus resemble those of previous studies, speaking towards the validity of our measurements.

We estimated the T1-relaxivity in CSF at 3T for gadobutrol and gadoteric acid. There was a difference in the relaxivity between CSF and water for gadobutrol, but not for gadoteric acid. In future studies on CSF-flow using T1-mapping post contrast injection, we recommend using a relaxivity value specific for CSF.
Sofia BEHNDIG (Umeå, Sweden), Anders GARPEBRING, Daniel DAHLGREN LINDSTRÖM, Jan MALM, Anders WÅHLIN, Anders EKLUND
11:14 - 11:16 #47632 - PG122 Proof of concept study of UTE-based dosimetry maps in head and neck cancers.
PG122 Proof of concept study of UTE-based dosimetry maps in head and neck cancers.

The use of MRI in radiotherapy planning has increased over the years as MRI represents a non-ionizing modality providing both an improved contrast between soft tissues compared to the classically used CT scan and an opportunity for personalized therapy. However, a limitation toward MRI-only dosimetry is the absence of direct physical link regarding the electron density (ED) of the tissues that is provided by the CT scan. This information is required by dosimetry algorithms to compute the dose distribution. Efforts have been made to overcome this limitation with a focus of the community oriented toward the generation of synthetic CT images using artificial intelligence algorithms [1]. Another approach is to rely on quantitative information acquired through MRI to approximate the tissues ED. Demol et al. [2] showed that dosimetry based only on the hydrogen content of the tissues performed as well as ones based on CT scanner. Seco et al. [3] provides an equation for the ED as a function of the atomic composition of the tissues. MRI sequences such as the Ultrashort Echo Time (UTE) sequence can be used to obtain a signal related to the proton density contained within the tissues. Thus, it would be possible to derive ED maps from UTE images with a tissue correction provided by the mass density that would account for the bone that is difficult to measure in MRI.

A phantom with variable proton density was designed using water tubes diluted with D2O in various proportion. UTE images were acquired on a 3T Siemens VIDA (Siemens Healthineers, Erlangen, Germany). The average signal value in each tube was linked to the corresponding theoretical proton density using linear regression. A study was designed using 3T MR and CT images of thirteen patients with various tumors locations. The MRI protocol included a Spiral VIBE UTE sequence which was set up to recover a signal proportional to the proton density of the tissues (flip angle = 5° and TE = 0.03ms). Preprocessing included N4 bias field correction of the MR images and registration of CT in the MRI space using the SimpleITK [4]. The UTE signal of the tissues was expressed relatively to the UTE signal of pure water. The ED value was obtained by using the following equation based on the results of Demol et al. [2] and Seco et al. [3]: ρ_(e_tissue) = (ρ_(H_tissue) + ρ_tissue)/2 with ρ_(e_tissue) the ED of the tissue relative to water, ρ_(H_med) the UTE signal relative to water and ρ_tissue the tissue's mass density. A categorical mask of the main tissue types (air, bone, fat and soft tissues) was derived from the CT through Hounsfield Unit thresholding. The mask was used to apply the tissue correction based on mass density values from the literature [3]. Fig 1 shows the final dosimetry maps: UTEtissues refers to the maps with tissue correction while UTEwater refers to maps where water mass density was used in the whole body. Values represent ED multiplied by 100 to respect the DICOM formalism. Dosimetry plans used for the treatment of each patient were recomputed without re-optimization using MONACO (Elekta AB). Resulting dose maps were analyzed through dose differences at 95% of tumoral volumes (TVs) and at 2% organs at risks volumes (OaRs). Gamma pass rate at 3%/3mm and 2%/2mm were computed using PyMedPhys[5]

Measurements of the UTE signal were plotted against the theoretical proton density within the tubes. Fig 2, B shows the resulting curve indicating a linear relationship between UTE signal and proton density (R² = 0,987). Gamma pass rate computations at 3%/3mm provide a mean value of 99.4±0,5% and 99.1±0,5% for the doses computed from UTEtissues and UTEwater respectively. At 2%/2mm, mean values are 97.9± 1.5% and 97.1±1,7% with a significant difference shown by a Wilcoxon test (p≤0,05). The dose differences are negative in most OaRs and TVs for the UTEtissues maps while closer to zero in UTEwater maps (fig 4-5). Globally mean dose values ranged between -4% to 3,7% with σ∈[0,7%; 6%].

Gamma pass rate results indicate a good correspondence of the UTE based dosimetry with the CT based one and the tissue correction appears to improve performance in that regard. Globally ED values in both UTE-based maps were higher than expected leading to a reduced dose deposition as the doses were computed without re-optimization of the treatment plan. A larger study will be conducted to improve reliability of the results as well as the accuracy of the tissue correction on the dosimetry. Also, as UTE signal can be affected by T1-weighting, assessment of its impact in the dosimetry and its correction will be necessary.

This study suggests that UTE derived dosimetry maps could have the potential to plan the dose in head and neck cancers only using MRI images although optimizations and verifications are still required. An additional chemical shift encoded scheme in the spiral VIBE UTE could allow fat-water decomposition and avoid the need of CT images for tissue categorical mask computation.
Nils TANNEAU (Lyon), Laura SAYAQUE, Benjamin LEPORQ, Charlène BOUYER, Frank PILLEUL, Vincent GREGOIRE, Olivier BEUF
11:16 - 11:18 #47813 - PG123 Double inversion recovery with controlled signal suppression.
PG123 Double inversion recovery with controlled signal suppression.

Double inversion recovery (DIR) is a magnetic resonance imaging (MRI) technique in which signal from two types of tissue are suppressed, usually cerebrospinal fluid and white matter [1]. The suppression is achieved with two inversion pulses, which are almost always adiabatic pulses, such as hyperbolic secants. In brain regions affected by off resonance due to strong inhomogeneity in the static magnetic field, inversion may be inadequate, resulting in bright signal. We present a 3D DIR scan with inversion pulses that are robust against such inhomogeneities.

Using an optimal control framework [2], we designed preparation pulses that fulfill the following criteria: desired target flip angle of 180 degrees, insensitivity to off-resonance (inhomogeneities in the static magnetic field) over a range of ±5. ppm, target flip angle independent of RF amplitude from 80% to 115% of nominal RF amplitude. These criteria were incorporated directly into the cost functional of an optimal control framework for pulse optimization. Maximum available RF amplitude and phase variation were in compliance with the scanner’s RF coil and specific absorption rate (SAR) limitations. Experimental data with the conventional and the new inversion pulses were acquired and compared at 3 T in a phantom designed to exhibit strong inhomogeneities in the static field, and in human participants (3 healthy volunteers, 2 patients with multiple sclerosis, 1 patient with post-concussive symptoms, 2 participants with asymptomatic white matter hyperintensities). The phantom consisted of a cylinder (diameter = 1.5 cm, length = 9.5 cm) filled with a gadolinium solution (concentration = 0.05 mmol/ml) immersed in a cylindrical phantom (diameter = 13 cm, length = 17 cm). The phantom was placed inside the scanner with the Gd-filled cylinder perpendicular to B0, in order for the paramagnetic solution in the cylinder to create field inhomogeneities. For the phantom scan, only a single inversion pulse was tested in a fluid attenuated inversion recovery (FLAIR) scan, with a TR of 1650 ms, matched to the nulling of the phantom’s water signal. In the participants, DIR images were acquired with sagittal readout in three dimensions with 1 cubic mm isotropic resolution, 1st inversion time (TI1) = 2550 ms, 2nd inversion time TI2 = 470 ms, repetition time (TR) = 5500 ms, effective echo time (TE) = 293 ms. Images were assessed by a neuroradiologist with 42 years of MRI experience. Only the two inversion pulses were replaced in the modified DIR and no other changes to the sequence were made.

The new inversion pulse resulted in nearly perfect inversion across the entire phantom, whereas with the conventional pulse bright artifactual signal appeared in areas with inhomogeneous field (Figure 1). In human participants (Figure 1), such bright signal appeared near the paranasal sinuses with the conventional pulse but, was absent with the controlled double inversion recovery scan. Image contrast of lesions in multiple sclerosis (Figure 2) and in white matter hyperintensities were identical for DIR with the optimized pulses and DIR with the conventional pulses.

The bright hyperintense artifact in DIR mimics MS lesions and may result in misdiagnosis. The artifact may also overshadow actual pathology in that region. The modification of the DIR sequence requires no hardware modifications or changes to data sampling and reconstruction, which aids clinical adoption of the scan. The improved DIR was validated in a phantom and a small number of patients and healthy volunteers and future work in more conditions will further validate the scan.

DIR with robust inversion pulses prevents artifacts caused by incomplete inversion, without altering image contrast of MS lesions and white matter hyperintensities.
Alexander JAFFRAY (Vancouver, Canada), Christina GRAF, Armin RUND, Stefan STEINERBERGER, Anthony TRABOULSEE, David LI, Alexander RAUSCHER
11:18 - 11:20 #47822 - PG124 Quantitative gradient recalled echo (qGRE) with navigator based correction: a test-retest pilot study on healthy controls.
PG124 Quantitative gradient recalled echo (qGRE) with navigator based correction: a test-retest pilot study on healthy controls.

Quantitative Gradient Recalled Echo (qGRE) MRI enables the in vivo estimation of tissue-specific relaxation metrics, such as R2t*, which reflects microstructural integrity and neuronal density. R2t* has been proposed as a sensitive imaging marker for early neurodegeneration,with prior studies demonstrating its value in Alzheimer’s disease and multiple sclerosis (Kothapalli et al., 2022; Zhao et al., 2016). However, its sensitivity to motion and physiological fluctuations limits reproducibility in clinical environments. In this pilot study, we evaluated in a test-retest fashion qGRE derived metrics (R2t*) in healthy subjects and how the use of a navigator-based correction (NAV) can improve estimation reliability with a minor time penalty. We implemented qGRE, aiming to validate its robustness for future longitudinal and clinical applications, therefore we investigate other metrics (R2* and QSM) can be estimated from the same sequence and that can benefit the NAV correction.

Thirty healthy participants (mean age 39.6 ± 6.4 years) underwent two identical qGRE acquisitions on the same day, with repositioning between sessions. The qGRE protocol included a 3D multi-echo gradient echo sequence (10 echoes, TR/TE1/ΔTE 50/4/4 ms, voxel size 1x1x2 mm³), with and without a phase-stabilized navigator inserted before the final echo (Fig. 1). A 3D T1-weighted sequence was acquired for each session of the test-retest (TR/TE: 8.4/3.7 ms, voxel size: 1x1x1 mm3). This navigator corrects for low-frequency B0 field fluctuations and physiological motion (Wen et al., 2015). R2t* maps were calculated using an established qGRE post-processing pipeline, including navigator-based phase correction, multi-echo fitting, and separation of tissue-specific and BOLD-related contributions (Ulrich & Yablonskiy, 2016). R2* maps were obtained using Auto-Regression on Linear Operations (ARLO) (Pei et al. 2015). QSM maps were obtained with Romeo (Dymerska et al. 2021) for phase unwrapping, iLSQR (Li et al. 2015) for background field removal and susceptibility estimation (Fig. 2). Brain parcellation was performed via FastSurfer (Henschel et al., 2020) on the T1 and transferred to the qGRE space by coregistering the first echo to the T1, to obtain ROI-based values. Reproducibility metrics calculated for uncorrected and NAV-corrected metrics included Intraclass Correlation Coefficient (ICC), Bland-Altman (BA) and passing-bablok (PB) analyses.

Fig. 2 shows a representative case of the positive impact of NAV, where the analysed metrics (R2* R2t* and QSM) in areas usually subjected to signal loss can be recovered. NAV correction improved the reliability of (R2* R2t* and QSM) measurements across the majority of both cortical and subcortical regions (Fig. 3). BA plots confirmed reduced or comparable bias in each metric and narrower limits of agreement in NAV-corrected data (Fig. 3). PB analysis corroborated the BA by showing an improvement in bias and variability across all the considered metrics in the test-retest when NAV is employed. ICC was highest in supratentorial areas, where navigator correction most effectively mitigated classical susceptibility artifacts that affects tissue interface areas. Cortical surface projections of ICC metric visually demonstrated the improved reproducibility, with NAVcor achieving more consistent estimate of R2t* (78% of ROIs) between the two acquisitions, however it provides a slightly lower improvement of reproducibility in R2* (69%) and QSM (50%) (Fig. 4).

This study confirms the test-retest reliability improvement of R2t*, R2* and QSM metrics derived from navigator-corrected qGRE acquisitions in healthy individuals. The navigator implementation successfully compensates for B0 instability and physiological motion, enhancing data consistency even in regions prone to susceptibility effects. Given these improvements, NAV can be considered a crucial component for standardizing qGRE acquisition protocols in clinical and research applications. The different improvement of the ICC metric in R2* and QSM when compared with R2t* might be explained by a higher susceptibility of R2t* to noise, that can be corrected by the navigator.

Navigator-based correction substantially enhances the reproducibility of qGRE-derived R2t*,R2* and QSM measures, demonstrating robustness across cortical and subcortical regions in healthy controls. This supports its integration into future clinical and longitudinal imaging protocols focused on microstructural brain assessment.
Marco CASTELLARO (Padova, Italy), Agnese TAMANTI, Giulio FERRAZZI, Teresa MALTEMPO, Roberta MAGLIOZZI, Valentina CAMERA, Alexander SUKSTANSKY, Dmitriy YABLONSKIY, Massimiliano CALABRESE
11:20 - 11:22 #47837 - PG125 About the synergy of servo navigation and PEERS for motion- and frequency-stabilized 3D EPI fMRI.
PG125 About the synergy of servo navigation and PEERS for motion- and frequency-stabilized 3D EPI fMRI.

Three-dimensional echo-planar imaging [1] (3D EPI) offers higher sensitivity and fewer spin history artifacts than 2D EPI [2-4], but makes fMRI time series more prone to dynamic behavior related to motion, physiology and drifts [4-5]. Servo navigation provides a self-calibrating plug-and-play run-time head motion and frequency correction using short (3.2 ms) navigators [6-7]. Recent work showed that frequency precision must be controlled cautiously for effective EPI corrections with high echo times, and phase equalization exploiting repeated shots (PEERS) was proposed, which fine-tunes the frequency estimates leveraging the repetitive EPI data [8]. This abstract explores the mutual benefits of servo navigation and PEERS for effective motion and frequency correction in 3D EPI time series.

Servo navigation requires three basic components for prospective motion correction (PMC) [6]. First, a 3D orbital navigator is inserted into a 3D EPI sequence between slab-selective excitation and EPI readout [8]. Second, a linear model is calibrated on the fly for parameter estimation by a finite differences method [6]. Third, a control mechanism rotates the imaging gradients and shifts the slab for run-time motion updates. The other two navigator shifts, and phase and frequency are corrected in the reconstruction. In this way, shot-wise 3D rigid motion, and global phase and frequency corrections are applied in run-time. As the frequency precision decreases with shorter navigator duration, EPI frequency corrections become vulnerable to noise propagation, especially for short navigators [8]. PEERS leverages the repetitive structure of fMRI scans to fine-tune the phase and frequency estimates from the EPI data itself as shown in Fig. 1. Phantom and in-vivo scans with six volunteers have been performed on a 3T Philips Ingenia scanner using a 32-ch head coil. Scans were conducted in accordance to local ethical regulations. Scan parameters were: FOV=220x200x100mm3, 2.5mm isotropic resolution, flip angle=17.2°, TE=30ms, TR=64ms, volume-TR=2s, Rphase=2.2, Rslice=1.8, 300 dynamics. The subjects performed a visuomotor task [8] with and without servo navigation. Two subjects were asked to repeat a motion pattern in separate runs with and without PMC. A phantom [6] was placed on a platform, which was repeatedly moved in and out by 1 mm also with and without PMC. Realignment and coregistration for statistical analysis were done using SPM12.

Figure 2 compares the impact of servo navigation (Servo), PEERS and volume realignment in-vivo for one subject without instructed motion. Each method improves temporal SNR (tSNR) individually. Servo and PEERS push performance beyond retrospective realignment and together marginalize the positive impact of realignment. A consistent tSNR improvement over all subjects is confirmed in Ref. [8]. Note that PEERS is a pure reconstruction method, and PEERS off and on are therefore based on the same data, which is not the case for servo navigation. Figures 3 and 4 compare the tSNR after realignment for phantom and in-vivo scans, respectively, in the presence of motion. In both figures, the tSNR drop from motion (c) is reduced by both Servo and PEERS individually (d-e) and largely mitigated for both methods together (f). Note that the tSNR in (f) always remains below motion-free tSNR with PEERS in (b). In Fig. 3, PEERS remains largely ineffective without motion correction (d) and can only contribute its tSNR impact in combination with servo navigation (f).

Servo navigation successfully performs run-time motion correction and maintains the signal correspondences in k-space over time. By this, PEERS is able to compare shots throughout the repetitive scan series and provides beneficial corrections. However, if motion remains uncorrected, PEERS cannot estimate the phase and frequency parameters well as shown in Fig. 3. In turn, PEERS provides high-precision frequency and phase estimates from the EPI itself, which eases the precision requirements on the navigator. This enables the use of short (3.2 ms) navigators even for high echo times. By matching the shot-wise phases to the reference volume, PEERS harmonizes frequency- and phase-induced fluctuations of the point spread function over time.

In conclusion, PEERS and servo navigation synergistically improve upon pure volume realignment by effective inter-shot and intra-shot corrections and, by this, clearly improve tSNR even after volume realignment. Together, the joint motion and frequency corrections stabilize the voxel time series, achieving robust 3D EPI fMRI with short 3.2ms-navigators.
Malte RIEDEL, Thomas ULRICH, Samuel BIANCHI (Zürich, Switzerland), Klaas PRUESSMANN
11:22 - 11:24 #48011 - PG126 Open MRI Pipeline for muscle strain calculation.
PG126 Open MRI Pipeline for muscle strain calculation.

In this work, we present a vendor agnostic implementation of a workflow for measuring strain in the forearm muscle induced by NMES. The pipeline encompasses all steps, from data acquisition using an accelerated CINE 4D flow to data reconstruction and analysis. This approach aims to address several challenges in both the quantitative evaluation of neuromuscular diseases and 4D flow data processing. Neuromuscular diseases are classified as rare, and multi-center/multi-scanner studies are necessary to obtain statistically significant sample sizes. Furthermore, although 4D flow has developed towards a quantitative method, the data processing steps are often non-standardized and rarely openly available, hindering reproducibility1.

A 4-point 4D flow sequence2 was implemented in Pypulseq (version 1.4.3) based on a 3D cartesian GRE acquisition, additionally the CINE acquisition was triggered with NMES stimulation of muscles in the forearm of the volunteer, with each contraction cycle lasting 1.5 s. In order to reduce the total acquisition time the sequence was accelerated with poisson disc undersampling (US factor 9), while keeping a fully sampled center of dimensions 13 by 10 points and elliptical scanning by trimming the edges of kspace (see Figure 1). With the help of Berkley Advanced Reconstruction Toolbox (BART)3, coil sensitivity maps were estimated using the ESPIRiT algorithm (ecalib), and complex data were subsequently reconstructed by incorporating these sensitivity maps to enhance the quality of the images from the raw k-space data. The dynamic acquisition was tested on n=6 healthy subjects (age 24-31, 5 females, 1 male) on a 3T whole-body scanner (MAGNETOM Prisma, Siemens Healthineers), while contractions were being evoked by NMES in the forearm muscles. A MRI compatible force sensor was used to record the intensity of the force from the evoked contractions during acquisition. A “gradient probing” sequence ​​to map gradient directions to physical coordinates was also implemented to aid in the interpretation of the data from the 4D flow sequence. The proposed pipeline investigates muscle dynamics by calculating strain tensors from velocity and derived displacement data and it requires a JSON file containing information about the physical direction of the gradients (obtained from the “gradient probing” sequence) and other sequence parameters necessary for the correct calculations of strain values. The strain eigenvalue calculation involves computing the deformation gradient tensor from 3D displacement fields, then deriving the Eulerian strain tensor and extracting its eigenvalues which represent principal strains in three orthogonal directions (stretching, intermediate, and compression components). Subsequently strain rates are extracted by fitting time-varying strain curves with sigmoid functions to quantify how quickly the tissue deforms during the contractions. The 4D flow sequence acquisition parameters were as follows: 27 phases, 2 lines per segment, TR=6.7 ms, TE=4.5 ms, FA=10°, resolution=1.5x1.5x1.5 mm³, venc=0.2 s, and acquisition time of 5 minutes. The sequence, data reconstruction, and analysis pipeline are available at the links below.

The undersampling and elliptical scanning (Figure 1) allow the acquisition time to be reduced from 28 minutes (fully sampled) to 5 minutes. The “gradient probing” sequence showed that the X gradient is increasing in the right direction, the Y gradient is anterior-increasing, while the Z gradient is superior-increasing (with respect to HFS patient coordinates). Figure 2 shows maps of the displacement and first eigenvalue of the strain tensor, where the muscles activated by NMES are clearly distinguishable. The results over the different phases are reported in Figure 3 along with the sigmoid fit used to calculate the buildup rate. The mean build up rate for all the subjects in an roi in the Flexor Digitalis Superficialis was 2.035 s-1. Finally, Figure 4 shows the combination of the force results obtained with the force sensor during NMES stimulation and displacement along the z direction. It can be observed that the displacement peaks earlier than the force because the mechanical response of the muscle to the contraction precedes the full development of force transmission through the musculoskeletal system, due to slack in the tendon-muscle complex4.

Further improvements are needed on the proposed pipeline to improve its robustness and reproducibility. The analysis in this work relied on hand drawn ROIs, while segmentation based on a conventional anatomical acquisition will be implemented for future application, additionally, the use of open and standardised data format such as musclebids is foreseeable.

This work introduced a fully open source implementation of a 4Dflow sequence and the accompanying pipeline to analyse the data obtained with the sequence and extract velocity, displacement and strain values from skeletal muscles that have been stimulated with NMES.
Marta Brigid MAGGIONI (Basel, Switzerland), Sabine RÄUBER, Francesco SANTINI
11:24 - 11:26 #47704 - PG127 Reference region B1+ mapping - a convex optimization approach.
PG127 Reference region B1+ mapping - a convex optimization approach.

Variable-flip angle (VFA) T1 mapping is a common approach for rapid T1 measurement [1]. B1+ mapping is essential in order to correct for transmit field inhomogeneities, which confound T1 measurements [2]. Numerous techniques exist for B1+ mapping in vivo [3-5], yet the required additional scanning can sometimes be undesirable (e.g. time constraints or the need for additional breath holds). Data-driven B1+ correction methods include modeling B1+ as a smooth multiplicative filter on the T1 map [6]. Another method involves using a reference tissue with known T1 to invert the VFA problem and estimate B1+, which has been demonstrated in breast imaging using fat as a reference and linear interpolation to infill water-dominant tissues [7], though it is computationally intensive for large datasets. Here, we instead pose the infilling as a convex optimization problem, leveraging spatial gradient alignment between the corrupted T1 map and the final B1+ map for VFA chemical-shift encoded body MRI.

In a variable flip angle experiment, the measured T1 is roughly quadratic with the ratio of the actual and nominal flip angles. This is shown below in Figure 1. We can state then that the T1 is proportional to the square of B1+. T1=a(B1+_actual/B1+_nominal)^2 where a is a proportionality constant with dependence on nominal T1 and other effects. For simplicity, the ratio of actual and nominal B1+ will be referred to as B1+ from hereon. T1=aB1+^2 (∂T1)/(∂B1+)=aB1+ ∂T1=aB1+ * ∂B1+ Since B1+ varies smoothly in space, adjacent points have similar B1+ at sufficiently fine spatial scales. For a single tissue type with uniform nominal T1, local variations in measured T1 are proportional to B1+. This assumes large contiguous regions of uniform T1 and that voxel-to-voxel B1+ variation is small in the acquired T1 map. ∇T1 = a∇B1+ To generalize to any nonlinear variation of B1+ in space, we can assume that the proportionality constant also varies in space. ∇T1=∇a∇B1+ Given known B1+ values using the reference region method previously described, we use the previous gradient relationship to formulate the interpolation step as an optimization problem as shown below in Figure 2. The problem was then solved as a conic programming optimization problem with CVXPY [8] interfacing the MOSEK commercial solver (mosek.com version 11.0.18). In vivo validation was performed on a 1.5T scanner (MAGNETOM Sola, Siemens Healthineeers, Forchheim, Germany) in the pelvis of a female volunteer. Reference B1+ maps were acquired with a Turbo-FLASH pulse sequence with a preconditioning pulse [3]. The parameters were as follows: TE = 1.89ms, TR = 12530ms, FA = 8 degrees, receiver bandwidth = 500Hz/pixel, acquired matrix = 192x256x36. To generate the reference region B1+ estimates, an in-house pulse sequence was used to acquire variable flip angle chemical-shift encoded data [9]. The parameters were as follows: nTE = 6, TE1 = 0.9ms, ΔTE = 1.2ms, TR = 8.73ms, FA = 3 & 14 degrees, receiver bandwidth = 1080Hz/pixel, acquired matrix = 192x256x44, partial Fourier phase encoding = 6/8, partial Fourier slice encoding = 6/8, R = 2x2 CAIPIRINHA. Reconstruction produced T1 water, T1 fat and proton density fat fraction (PDFF) maps. Reference region B1+ mapping was performed using the T1 fat map with fat dominant tissues assumed to have a nominal T1 of 280ms. The B1+ estimates from this were then used as the known B1+ for the convex optimization problem. Comparison was made between the method of Sung et al. using linear interpolation with Delaunay triangulation (griddata algorithm in scipy version 1.15.2) and the proposed method by measurement of root mean square error with the reference.

Reconstruction times of the B1+ maps for the proposed method and with linear interpolation for 5 slices surrounding isocentre were 26s and 26min 31s respectively. Reconstructions from the proposed method are shown with varying regularisation weights in the grid below in Figure 3. Increasing λ results in increasing bleed-through of the T1 map into the resultant B1+ map, whilst increasing μ results in tighter agreement with the reference region data. The combination of μ = 1, λ = 0.005 produced the smallest root mean square error with the ground truth data (RMSE = 0.0486) and was marginally better than the linear interpolation approach (RMSE = 0.0551). Difference images are shown below in Figure 4.

We present an optimization approach for interpolating B1+ from reference region data, achieving over 60× speedup compared to a Python-based linear interpolation routine and improved accuracy. Both methods showed large errors near subcutaneous fat boundaries, where fat T1 variability and tissue transitions may affect accuracy.

We demonstrate that convex optimization provides a compelling alternative for B1+ map reconstruction from reference region data. Further validation in broader anatomical contexts and patient cohorts is warranted.
Yassine N. AZMA (London, United Kingdom), Pete J. LALLY, David J. COLLINS, Nina TUNARIU, Dow-Mu KOH, Christina MESSIOU, Geoff CHARLES-EDWARDS, Christina TRIANTAFYLLOU, Neal K. BANGERTER, Jessica M. WINFIELD
11:26 - 11:28 #47775 - PG128 KISME: Kernel-based Incoherent Sampling of Multi-Echo data for the mitigation of physiological noise in relaxometry data.
PG128 KISME: Kernel-based Incoherent Sampling of Multi-Echo data for the mitigation of physiological noise in relaxometry data.

In MRI, human physiology (e.g. cardiac and CSF pulsation, breathing and eye movements) induces periodic modulation of the spatially-encoded signal in k-space, producing aliasing artefacts in the resulting images. Reordering the signal encoding (i.e. k-space trajectory) can scramble the fluctuations spatially [1]. Physiological noise also leads to coherent temporal effects in multi-echo gradient echo images [2] where data at each k-space location are conventionally acquired consecutively in time along the echo train. This biases the R2* estimates and reduces their precision [2]. These fluctuations can be made incoherent over echo time at the cost of increased scan time [3]. Here we present a refined method, Kernel-based Incoherent Sampling of Multi-Echo data (KISME) in which incoherent sampling is extended to the phase-encoded k-space plane, across echo times. Local reordering in this 3D space scrambles temporal signal fluctuations over a defined time window without increasing scan time. The k-space step size is minimised to avoid artefacts due to eddy currents. We validate the method qualitatively at 7T and quantitatively at 3T.

KISME divides k-space into a number of kernels with a specific width in each phase-encoded direction (Fig. 1A). Within each kernel, the k-space traversal is varied each TR by varying the starting k-space location, the intra-kernel route (Fig. 1B), and by adding k-space shifts between consecutive readouts (i.e. TEs, Fig. 1C). Each traversal of the kernel samples all k-space locations but at only one TE per k-space location. Traversals therefore need to be repeated to fully sample the 3D (kx,ky,TE) extent of the kernel. Each kernel is fully sampled before moving to the next. The starting locations within a kernel are pseudo-randomised to scramble signal fluctuations, while also minimising the step size between consecutive kernels to minimise eddy current related artefacts. This pseudo-randomisation leads to variable time to fully acquire data across TEs at a given k-space location (Fig. 2) mitigating the risk of coherently sampling signal fluctuations. For qualitative evaluation, 3D multi-echo spoiled gradient echo datasets were acquired on a 7T Siemens Terra. 11 echoes were acquired with TE ranging from 2.30 to 26.10 in 2.38ms intervals. Whole brain coverage, 0.6mm isotropic resolution, an acceleration factor of 2 in each phase-encoded direction and a TR of 31ms led to a scan time of 13.5 minutes. Data were acquired with either standard linear or KISME sampling. R2* maps were computed from the multi-echo data using a log-linear fit and evaluated via visual inspection. For quantitative evaluation, 3T data were acquired on a Siemens Prisma using a 30 channel receive coil with an integrated head immobilisation system, MrMinMo, to minimise overt participant movement. Either standard linear or KISME sampling were repeated 3 times in randomised order (6 acquisitions total). 8 echoes were acquired with TE ranging from 2.2 to 18.3 in 2.3ms intervals. A TR of 22.5ms and a 6 degree flip angle induced proton density weighting. 1 mm isotropic resolution, whole brain coverage and an acceleration factor of 2 in each phase-encoded direction led to an acquisition time of 3.8 minutes. R2* maps were computed using a restricted maximum likelihood fitting routine [4]. The impact of the sampling scheme was assessed via the precision of the estimated R2* maps across the repeated acquisitions.

KISME reduced physiological artefacts, particularly in the cerebellum, hippocampus, brain stem nuclei and posterior to the eyes. At 7T, the KISME images, particularly at later echo times, suffered substantially less artefacts and had much greater detail. This led to sharper anatomical delineation in the R2* maps and the removal of low spatial frequency patches of high/low R2* (Fig. 3). At 3T, KISME increased the R2* precision (Fig. 4). The median variance was reduced by 22% while its inter-quartile range was reduced by 26%.

KISME visibly reduced physiological artefacts at both 3T and 7T. The delineation of fine anatomical details was greatly improved (c.f. u-fibres, Fig. 3). At 3T, over three repetitions, KISME increased the precision of the R2* maps despite the comparatively short maximal echo time and use of the MrMinMo device, both of which increased robustness to physiology-induced and involuntary head motion. KISME limits the maximum step in k-space to mitigate any eddy current-induced artefacts. Its pseudo-randomised nature leads to a distribution of times taken to fully sample a given k-space location ensuring robustness to signal fluctuations above a threshold frequency, allowing the acquisition to be tailored to different imaging scenarios. Crucially, this is all achieved without increasing the acquisition time.

KISME scrambles physiology-induced signal fluctuations across both the spatial and temporal dimensions of a multi-echo dataset with no time penalty and improves the reproducibility and definition of R2* maps.
Benjamin JAMES (London, United Kingdom), Quentin RAYNAUD, Frederic DICK, Antoine LUTTI, Martina CALLAGHAN
11:28 - 11:30 #45995 - PG129 Towards fast and accurate quantification of T1, magnetization transfer, and susceptibility at high-resolution in the brain at 3T.
PG129 Towards fast and accurate quantification of T1, magnetization transfer, and susceptibility at high-resolution in the brain at 3T.

Unlike abdominal or cardiac imaging, quantitative MRI (qMRI) has not yet reached clinical maturity for neuroimaging [1]. The known limitations are i. the lack of standardization in the mapping technique leading to high variability of the reported values [2], ii. the fact that confounding effects are not always taken into account in the quantification [3], and iii. The poor spatial resolution or the long acquisition time, which are generally not in line with clinical standards. In a recent study [4], we aimed to meet these challenges by proposing a fast protocol for joint T1 and macromolecular proton fraction (MPF) mapping using advanced quantitative MT modeling [5, 6]. While this former work compared parallel imaging and compressed sensing techniques, we now intend to extend this approach by adding a deep learning-based reconstruction, as well as extending our multi-echo protocol to extract quantitative magnetic susceptibility (QSM). This not only enables shorter scans and an additionnal biomarker, but also substitute conventional weighted sequences with images derived from our quantitative framework.

Two protocols were compared on a single volunteer at 3T (MAGNETOM Vida, Siemens Healthineers, Germany) using a 64ch receive head coil, with a 3D isotropic 1-mm resolution in sagittal orientation, covering brain and spinal cord down to C7. Reference protocol (35’): Four sequences were acquired, all with CAIPIRINHA 2×2(1) acceleration and external calibration, except MPRAGE and SWI (R=2, integrated ACS) -joint T1-qMT: A prototype multi-gradient-echo sequence, MT-prepared with a 12 ms and ±4 kHz sine-modulated Hann-shaped saturation pulse applied at B1,RMSsat of 3.73 µT followed by a 10° readout pulse for MT weighted acquisition, repeated with a single-frequency offset of +100 kHz (unsaturated image) and variable flip angles (VFA) of 6°/10°/25° for 3 additional weighted volume acquisition enabling T1 and MPF joint estimation [6]. -QSM: A gradient-echo sequence with 5 echoes spaced according to the consensus paper (TE1=5ms; ES=6ms) [7], a readout FA=15° and a TR = 33 ms enabling QSM quantification using an integrated research processing pipeline with MEDI algorithm [8]. -MPRAGE: A standard T1w anatomical scan following ADNI recommendation [9] (FA=9°, TI=900ms, TR=2300ms) with a modified rectangular field of view to cover both the brain and the cervical spine as in joint T1-qMT. -Susceptibility Weighted Imaging (SWI): TE=20ms and TR=33ms. Accelerated protocol (8’30”): A single execution of the MT-prepared multi-gradient-echo sequence described above and three repetitions of its non-saturated version (VFA), extended to include 6 echoes, were played keeping a constant TR = 30 ms (Fig.1). The non-MTw FA=10° volume was also used for QSM estimation. In addition, this protocol was accelerated with CAIPIRINHA 3×3(1) and reconstructed with a research SENSE-based deep-learning (DL) denoising algorithm [10]. For each protocols a transmit field B1+ map was acquired for correction purposes.

Image comparison of T1w, T2*w, quantitative T1, MPF, and QSM maps are shown in Fig. 3. T1w images yielded qualitatively comparable results between protocols. The T2*-weighted image is more contrasted with the reference protocol. The former protocol produces more noise in the center of the brain in consistency with parallel imaging CAIPIRINHA reconstruction. The effect of DL denoising is seen in the second protocol without any a priori contrast deterioration. The quantitative analysis for deep grey matter regions and larger white matter (WM) lobes is shown in Fig. 4. T1 and MPF distributions are narrower for the accelerated protocol, likely reflecting weaker dispersion due to noise within ROIs. Overall, the distributions of both protocols are overlapping for T1, MPF and QSM meaning that the average qMRI metrics are of the same order. Only the T1 values in Caudate show a discrepancy between protocols.

Both protocols provided metrics in good agreement. The impact of denoising seen in T1 and MPF narrowed distribution is not seen in all QSM regions. The QSM reference protocol appears to be less affected by noise than the qMT protocol and could be evaluated in future work using MP-PCA noise estimation for both protocols. Besides, there were not many differences between protocols for T1 and MPF estimation compared to QSM. The T2*w image derived from the accelerated protocol would likely benefit from fine-tuning of the echo combination as compared to the original single-TE SWI. The T1w image from the accelerated protocol can be used for both quantification and anatomical purposes, replacing the traditional MPRAGE.

We demonstrated that a multiparametric protocol quantifying QSM, joint T1 and MPF in the brain is feasible within standard clinical acquisition time and spatial resolution without requiring any additional conventional weighted sequences. Further work will focus on optimizing reconstruction parameter for better quantitative and qualitative results.
Anita MASLIAH (Marseille), Lucas SOUSTELLE, Hugo DARY, Kamal ACHALHI, Marcel Dominik NICKEL, Josef PFEUFFER, Maxime GUYE, Stanislas RAPACCHI, Olivier GIRARD, Thomas TROALEN
11:30 - 11:32 #47373 - PG130 Phase graph-based MRI simulation including off-resonant pulse response.
PG130 Phase graph-based MRI simulation including off-resonant pulse response.

Extended phase graph (EPG) simulations [1] or phase-distribution graph (PDG) simulations [2] so far only support on-resonant radio frequency (RF) pulses that act instantaneously. Various aspects of MRI, such as the separation of fat and water signals, however, rely on off-resonant RF pulses. We show here an extension of phase graphs to treat off-resonant RF pulses and allow for simulation of off-resonance effects in MRI. While only block pulses are considered and they are still executed as an instantaneous event, several key MRI features can be simulated by this extension.

In this work we specifically extend the PDG simulation [2] of the MR-zero simulation framework [3] which allows image simulation. For the simulation of MR sequences in PDG, magnetization is decomposed into configuration states, which are described in a complex coordinate system. The action of an RF pulse is implemented via a rotation matrix depending on the RF pulse flip angle and phase, that acts on the magnetization vector. Sodickson and Cory [4] suggest an extension of this formalism to account for RF pulses applied at an off-resonance. The RF pulse amplitude is assumed to be constant. The off-resonance is reflected via a rotation by an effective angle around an effective axis, that is tilted with respect to the B0-axis. The tilt of this axis is determined via the frequency of the B1 field. This results in changes to the amplitudes and phases of the magnetization components compared to an on-resonant RF pulse of the same flip angle [4]. The extended simulation framework is validated via (i) selective pulses for fat-saturation [5], (ii) binomial water excitation [6] and (iii) the B0 and B1 mapping method WASABI [7]. (i) Fat saturation is achieved via a single off-resonant RF pulse (flip angle: 90°, frequency offset: -3.5 ppm, duration: 8 ms) and a dephasing gradient before the imaging sequence. (ii) Water excitation is done via binomial pulses. For the simulation experiments a 1-2-1 binomial pulse configuration is used to replace the 10 deg excitation pulse in a FLASH readout. (iii) The WASABI method uses a conventional FLASH readout to sample 30 off-resonant preparations (single off-resonant RF pulse with flip angle: 284 deg, duration: 5 ms) distributed equidistantly across a range of frequency offsets of ±2 ppm. The pulse schemes for fat saturation and water excitation are shown in Fig. 1A. The brain phantom used for the simulation experiments is built from the data provided in the BrainWeb database [6]. Segmented maps for grey and white matter, as well as CSF are filled with values for the physical tissue parameters. Subcutaneous fat was manually added to the parameter maps. The generated phantom was used to simulate. As the base sequence for the simulation experiments a centric reordered FLASH sequence with imaging parameters TE = 2 ms, TR = 4 ms, FOV = 200 mm × 200 mm, matrix = 100 × 100, flip angle = 10 deg and slice thickness = 5 mm is used. The changes (i)-(iii) are implemented to the sequence respectively.

The brain is surrounded by subcutaneous fat (Fig. 1B). Under ideal conditions (constant B0 and B1) the fat signal could be suppressed efficiently by an off-resonant fat saturation pulse, leaving little to none residual fat signal in the image (Fig. 1C). As an alternative method of fat and water signal separation, water-excitation via binomial pulses during the imaging sequence, was simulated. Similarly yielding efficient fat suppression under ideal conditions (Fig. 1E). When B0 and B1 inhomogeneities were introduced, both methods maintained effective fat suppression, although with slightly increased visibility of residual subcutaneous fat. The image acquired using water excitation (Fig. 1F) appeared clearer than that obtained with fat saturation (Fig. 1D). The frequency response of these fat-water separation techniques (Fig. 1G) shows the expected behavior. Off-resonant excitation was further validated by B0 and B1 field mapping via the WASABI method. The resulting simulated B0 and B1 maps closely matched the corresponding ground truth maps from the simulation phantom (Fig. 2).

The implementation of the formalism from Sodickson and Cory [3] into the PDG simulation was shown to correctly simulate the effects of off-resonant RF pulses in different applications. The formalism, however is limited to block pulses, as it assumes a constant pulse amplitude. Other pulse profiles (e.g. Sinc or Gaussian) that violate this assumption are currently not reflected. Furthermore, pulses have to be sufficiently short, such that relaxation effects during the pulse can be neglected.

We demonstrated and validated the extension of a phase graph-based MRI simulation with off-resonant pulses. This extension enables the simulation of off-resonance effects of MRI and further increases the accuracy of the simulation of MRI sequences. A generalization of this extension to different pulse profiles and arbitrary pulse durations remains future work.
Felix DIETZ (Erlangen, Germany), Simon WEINMÜLLER, Jonathan ENDRES, Moritz ZAISS
11:32 - 11:34 #46516 - PG131 Investigating ihMT T1D-filtering imaging for characterizing demyelination and inflammation processes in MS lesions.
PG131 Investigating ihMT T1D-filtering imaging for characterizing demyelination and inflammation processes in MS lesions.

The pathological processes involved in multiple sclerosis (MS) lesions, which include demyelination, inflammation, clearance of myelin debris, and induction of glial scar, need to be better characterized. Most of these processes imply cells composed of large and motionally restricted macromolecules (e.g., myelin, macrophages, microglia, astrogliosis). In this context, inhomogeneous magnetization transfer (ihMT) MRI [1,2] may present benefits for macromolecule characterization. ihMT is an MRI technique, weighted by T1D, the dipolar order relaxation time, an endogenous source of contrast driven by slow molecular dynamics and tissue microstructure. As demonstrated in a preclinical study [3,4], long T1D values are mostly associated with myelin, and can be isolated by ihMT high-pass T1D filters (HP); whereas short T1D values are thought to be associated with other macromolecules and can be assessed using ihMT bandpass T1D filters (BP). Consequently, ihMT T1D filters may provide semi-quantitative measurements of both the density of myelin and that of other macromolecules. Here, we investigated ihMT HP and BP T1D filter imaging obtained within a single ihMT sequence in humans at 3 T, and assessed its potential as an indicator of myelin and macromolecule density in MS lesions.

Two healthy controls and two relapsing-remitting MS (RR-MS) patients were scanned on a 3T MAGNETOM Vida (Siemens Healthineers, Erlangen, Germany) using a ~1h protocol approved by the local ethics committee. Acquisitions included: 3D T1-weighted MPRAGE, 3D FLAIR, optimized 3D GRE ihMT for HP/BP T1D filtering (Table 1), and multi-echo GRE (MGE) for QSM reconstruction using MEDI [5]. The ihMT GRE sequence was used to acquire images with multiple saturation conditions (MT+, MT−, MT± (FA, frequency-alternated) with τswitch=1.5 ms, and MT± (CM, cosine-modulated) with τswitch=0 ms), along with a reference image M0. HP and BP filters were computed as (eq. 1): HP = ihMTR_FA BP = ihMTR_CM − ihMTR_FA where ihMTR = (MT+ + MT− − 2×MT_FA or CM) / M0 Using prior fluorescence microscopy comparisons in mice, linear models were established relating HP and BP signals to myelin density [My] and other macromolecule density [Mm] (eq. 2): HP = α·[My] + b·[Mm] BP = α′·[My] + b′·[Mm] These equations were then inverted to estimate apparent [My] and [Mm] maps from experimental ihMT signals.

IhMT HP T1D filters show a very strong GM/WM contrast and an average signal of ~10% in WM. As expected, by their sensitivity to short T1Ds, ihMT BP T1D filters show a weak contrast with a signal of ~3% (Fig. 1). IhMT HP and BP T1D filters demonstrated sensitivity to MS. Used together, they allowed semi-quantitative estimation of the density of myelin and that of other macromolecules in lesions (Figs. 2-3). Their signal profiles across the investigated lesions revealed various levels of demyelination accompanied by an increased density of other macromolecules. Of interest, the macromolecules signal did not always match the QSM signal, indicating a sensitivity of ihMT T1D filters to different types of macromolecules.

The semi-quantitative indices [My]* and [Mm]* can be derived from a single MR sequence. The nature of the macromolecules revealed by the [Mm]* signal is not addressed here, but its mismatch with the QSM signal in some lesions may suggest that [Mm]* is sensitive to iron-positive myelin-negative pro-inflammatory macrophages [6-8], and to iron-negative myelin-laden macrophages present in the center of demyelinated lesions [6]. Hence, combining ihMT T1D filtering and QSM may allow for more accurate characterization of the inflammation processes in MS lesions. However, several improvements are essential to make this technique more accurate, more robust and clinically viable: - reducing sensitivity to motion and transmit-field (B1+) by decreasing the acquisition time, and use of B1-correction strategies, respectively - increasing the ihMT BP T1D filter signal intensity by optimizing the τswitch value - improving the accuracy of α, α', β, β' constants (eqs. 1-2), which are currently estimated on the basis of preclinical experiments with non-identical MR sequence variables.

This study demonstrates the promising potential of the ihMT T1D filtering technique to refine the characterization of both demyelination and other processes in which different macromolecules are involved (e.g. inflammation) in MS lesions.
Andreea HERTANU (Marseille), Timothy ANDERSON, Lucas SOUSTELLE, Ludovic DE ROCHEFORT, Lauriane PINI, Thomas TROALEN, Jean PELLETIER, Olivier M. GIRARD, Guillaume DUHAMEL
11:34 - 11:36 #46461 - PG132 Quantitative susceptibility mapping in clinical contexts using spatially non-isotropic multi-echo gradient echo data.
PG132 Quantitative susceptibility mapping in clinical contexts using spatially non-isotropic multi-echo gradient echo data.

Quantitative susceptibility mapping (QSM) based on multi echo gradient echo (mGRE) magnetic resonance imaging (MRI) [1] is promising for quantifying iron deposition in the human brain and other organs [2]. In neurological diseases with known iron deposition like Parkinson’s disease, QSM could serve as a valuable biomarker of iron deposition [3]. However, reconstructing quantitative susceptibility parameter maps from mGRE MRI phase information constitutes an ill-posed inverse problem and results depend on image acquisition and postprocessing [4]. Therefore, the Electro-Magnetic Tissue Properties Study Group of the International Society of Magnetic Resonance in Medicine (ISMRM) recently published recommendations for implementing QSM for clinical brain research to promote standardized data acquisition and analysis [5]. In particular, an acquired isotropic spatial resolution of 1 mm is recommended. However, for achieving maximum volume coverage in minimal scan time, clinical QSM acquisition protocols frequently use elongated voxels with higher in plane (typically < 1mm) and lower through-plane resolution (slice thickness > 1 mm) as well as higher acceleration factors and bandwidths (BW). In this study, we aimed to assess the reliability of already acquired clinical mGRE data with more elongated voxels for QSM. Therefore, we acquired mGRE in ten healthy volunteers with a QSM consensus protocol and a commonly employed optimized clinical protocol, calculated QSM maps using three different evaluation pipelines and compared the resulting parameter maps with respect to artefacts and quantitative susceptibility values in deep gray matter (GM).

Ten healthy subjects (30.9±9.5 y, 4m/6f) were scanned on a 3T Philips Ingenia Elition X scanner (Philips Healthcare, Best, NL) equipped with a 32-ch head coil. Two mGRE protocols were acquired in strictly axial orientation: 1) the spatially isotropic QSM Consensus Protocol; 2) an anisotropic more accelerated protocol with elongated voxels in slice-encoding direction (see Fig.1 for acquisition details). Each 3D mGRE data set was processed using three different QSM reconstruction pipelines: 1) MEDI [6] and 2) STI-iLSQR [7] were applied with default parameters as described before [4]; 3) a prototype implementation of the multi echo complex total-field inversion (mTFI) algorithm [8, 9] was employed as provided by Philips. A systematic assessment of reconstruction quality was performed by visual rating using a 4-point scale (0 = no artifact, …, 3 = worst artifact) according to recommended criteria [10]. Quantitative susceptibility values were extracted from deep GM nuclei affected by Parkinson’s disease, i.e., Substantia Nigra (SN) and Red Nucleus (RN), by transforming the multi-contrast PD25 atlas [11] to each individual subject’s QSM data. For statistical analysis, paired two tailed t-tests were applied to test for statistically significant differences between susceptibility values obtained with different imaging protocols and QSM reconstruction pipelines.

Fig.2 shows QSM reconstructions from one subject. While the susceptibility maps obtained from the QSM consensus protocol (top) look similar for mTFI, STI-iLSQR, and MEDI quite some variability can be observed for the QSM reconstructions from the anisotropic more accelerated protocol. Systematic assessment of reconstruction quality revealed stronger artifacts in all categories for the anisotropic clinical compared to the isotropic QSM consensus protocol (see Fig.3). In particular, QSM reconstruction by MEDI failed in two subjects that were excluded from VOI evaluations. Comparison of group average susceptibility values (Fig.4) demonstrated that mTFI, MEDI, and STI-iLSQR yield comparable susceptibility values for the QSM consensus protocol, while there is quite some variability for values obtained from the anisotropic clinical protocol. Notably, the mTFI reconstruction generates high-quality susceptibility maps (Fig.2) with overall minimal artifacts (Fig.3) and stable susceptibility values with both MRI protocols (Fig.4).

Quantitative susceptibility maps obtained from the highly accelerated, anisotropic clinical mGRE data seem to be less reliable when reconstructed by MEDI [6] or STI-iLSQR [7] compared to mTFI [8, 9]. This fits with recent work, which recommended spatially isotropic MRI acquisition protocols [5] and demonstrated detrimental effects of low spatial resolution [12] as well as a strong dependence of QSM results on the reconstruction pipeline [4]. As mTFI provided highly comparable results for both investigated MRI protocols, it seems to be a reliable tool for calculating QSM maps from clinically acquired, spatially anisotropic and highly accelerated MRI data.

The mTFI method appears to be a promising tool allowing reliable evaluation of highly accelerated mGRE data with non-isotropic spatial resolution that are commonly acquired in clinical contexts.
Dorna HEIDARY (München, Germany), Elisa SAKS, Kilian WEISS, Ronja BERG, Benedikt WIESTLER, Jan KIRSCHKE, Dimitrios KARAMPINOS, Jakob MEINEKE, Christine PREIBISCH
Espace Vieux-Port

"Friday 10 October"

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D22
11:00 - 12:30

FT2 LT - Translational MRI beyond anatomy
Functional and physiological imaging

Chairpersons: Catarina DOMINGOS (Phd Student) (Chairperson, Portugal, Portugal), Christian KREMSER (Physicist) (Chairperson, Innsbruck, Austria)
FT2: Cycle of Translation
11:00 - 11:02 #45952 - PG133 Plug’n Play 3D MRSI at 7T with full scanner integration.
PG133 Plug’n Play 3D MRSI at 7T with full scanner integration.

1H-MRSI offers unparalleled insight into brain metabolism without the need to take biological samples, and consequently has application potential in several diseases [1-3]. However, several reasons hold it back from being used in clinical routine. Along with its low sensitivity, the need for expert knowledge in the acquisition, reconstruction, interpretation and evaluation of the results is one of the main obstacles for MRSI for routine clinical application. This expert knowledge includes: Placement of field-of-view (FOV), volume of interest (VOI), B0-Shimming, water-suppression optimization; Image-reconstruction, pre-processing steps, spectral fitting, and absolute concentration calculations; interpretation of metabolic maps, ratio maps, and uncertainty maps. With the recent advances in artificial intelligence, some of these steps may become obsolete or remove the necessity of involving an MRSI expert. Thus, the aim of this study was to implement and briefly compare based on initial insights: (A) an automated acquisition and scanner-integrated processing pipeline that requires no more than a localizer image and a few mouse clicks to position the FOV/VOI, perform 3D and interactive shimming and start the sequence. The sequence provides both metabolic maps along with corresponding uncertainty (i.e., CRLB) maps within minutes after the acquisition. (B) our established offline reconstruction, pre-processing, and quantification pipeline running on a dedicated multi-core CPU-server requiring knowledge/experience in programming languages.

We implemented our reconstruction into the ICE framework of our Siemens 7 T scanner. The reconstruction steps included (see Figure 1): Real-time frequency drift correction (via an unlocalized scan, acquired and processed but not used here for this data), coil-compression (from 32 to 10 virtual receive channels to reduce raw data size), averaging of data, channel noise-decorrelation, in-plane field-of-view shift, correcting for chemical shift phase accrual along the ring trajectories, gradient delay correction, k-space density correction to a Hamming filter, in-plane discrete Fourier transform, fast and discrete Fourier transforms. The final data were branched out from ICE to the Siemens framework for image reconstruction environments (FIRE) to perform brain and lipid masking (using iMUSICAL data), L2 lipid regularization (regularization parameter 20E-17), coil combination using iMUSICAL data [4] and voxel-wise spectral fitting. The fitting was implemented as a physics-informed deep auto-encoder which uses a model-based decoder that is very similar to LCModel [5]. After fitting, metabolic, metabolic ratio, and metabolic uncertainty maps are created in ICE. We measured four subjects on our Siemens Magnetom DotPlus 7 T scanner with a 32-channel receive/1-channel transmit coil. The protocol included a 3D concentric ring trajectory (CRT) MRSI sequences [6] with a resolution of 3.4×3.4×3.4 mm³ (matrix 64x64x35, 300ms readout, TR 420 to 450, scan time <10 minutes) and spectral bandwidth of 2778 Hz, an MP2RAGE sequence (for offline masking), and a localizer for placing the MRSI sequence. Raw data is processed at our server with 40 physical CPU cores (Intel(R) Xeon(R) Platinum 8280, 2.70GHz), 504 GiB RAM with Matlab and LCModel.

While offline processing would take 3 hours (no L2) to 5 hours (and sometimes even twice as much if servers are busy), the online approach after finishing the CRT-MRSI scan takes additionally 4-5 minutes (no L2), 14-18 minutes (with L2) and about 20 minutes if retro-reconstructed (with L2). A feature is that upon demand the reconstruction provides spectra and maps with and without L2 simultaneously. Shown are the metabolites: total choline (tCho), total creatine (tCr), glutamine (Gln), glutamate (Glu), Glu+Gln (Glx), glutathione (GSH), myo-inositol (mIns), total NAA (tNAA=NAA+NAAG) and taurine (Tau). Figure 2 displays various maps of Volunteer 4, Figure 3 shows subsequent brain slices of Volunteers 1 and 2 and Figure 4 (left) demonstrates the effect of L2 versus no L2 regularization of Volunteer 3 as well a comparison of online with offline processing of Volunteer 2 (right).

The online-metabolic maps are of high quality and differ from the offline-maps mostly in the cases were L2 was used since BET brain masking is differs due to different inputs (iMUSICAL vs. MP2RAGE). This results ultimately in different lipid masks. We also observe very slight differences in constrast which propably result from the different fitting methods. As an outlook for the next steps we plan to apply the frequency drift correction and improve and speed up the L2 regularization by deeplearning, for example with WALINET [7].

Automating the MRSI acquisition and reconstruction will greatly improve the applicability of MRSI in clinical routine, as no expert knowledge is necessary. This study will help understand if future full automization (i.e. shimming) is feasible with our current methodology.
Lukas HINGERL (Vienna, Austria), Korbinian ECKSTEIN, Bernhard STRASSER, Aaron OSBURG, Stanislav MOTYKA, Amir SHAMAEI, Philipp LAZEN, Alireza VASFI, Anna DUGUID, Wolfgang BOGNER
11:02 - 11:04 #47881 - PG134 Hyperpolarized 129Xe MRI on a clinical scanner using commercially available cryogen free dDNP polarizer.
PG134 Hyperpolarized 129Xe MRI on a clinical scanner using commercially available cryogen free dDNP polarizer.

Hyperpolarized (HP) 129Xe is an excellent NMR probe for porous media, proteins and tissues [1]. Most importantly, the research and technological development in the past two decades have explored HP 129Xe MRI as a diagnostic tool for diseases related to lung ventilation [2][3][4], reaching FDA approval in 2022 [5]. Also, its ability to penetrate the blood brain barrier proved useful for brain perfusion [6][7]. 129Xe is routinely hyperpolarized using spin exchange optical pumping (SEOP), a very efficient technique, but limited to noble gases [8][9]. On the other hand, Dynamic Nuclear Polarization (DNP) is inherently universal for all NMR active nuclei, and its use is growing to a clinical level for metabolic MRI [10]. The feasibility of hyperpolarizing 129Xe with DNP (xenon DNP), has been demonstrated [11][12][13][14]. The complexity of the solid state mixture preparation led to variable and limited polarization [14]. Simplifying the sample preparation process made xenon DNP more user-friendly and achieved solid-state polarization levels comparable to SEOP [15]. Nevertheless, making xenon DNP readily available for preclinical studies, entails developing a robust and reliable protocol for gas sublimation after dissolution. This work focuses on translating proof-of-principle DNP HP xenon gas [14] to a procedure implementable on a commercially available polarizer.

Xenon DNP sample preparation: In addition to natural abundance xenon (26% 129Xe), the DNP samples consist of trityl radical (Finland acid) and 2-methylpropan-1-ol. All samples had ~30 mL xenon, 30 mM radical concentration and total volumes 300 µL or 500 µL. The gas admixture into the solvent follows methods described in our previous work [8]. DNP happens at 6.7T and 1.2 K on a SpinAligner polarizer (Polarize ApS, Denmark). Xenon sublimation: The buffer volume and push time were adjusted to the custom built sublimation equipment (i.e. liquid/gas phase separator plus a set of valves and tubing) and a TEDLAR bag used to collect the gas (0.6L Tedlar(R) PLV Gas Sampling Bag, Sigma-Aldrich) in order to fully dissolve the sample while at same time avoid liquid residuals in the TEDLAR bag (Figure 1 C and D). The xenon DNP was compared to HP xenon gas produced on a clinical SEOP polarizer (POLARIS, University of Sheffield) with isotopically enriched 129Xe gas (86%) (Linde Gas A/S, Denmark). The gas samples were measured with a dedicated transmit/receive 129Xe 8-channel vest coil (JDcoils, Germany), in a 3T MRI scanner (Signa, GE Healthcare).

Increasing the solvent volume while keeping the same amount of gas in the sample improved solid state polarization by 2.5 times (Fig 2A). The buildup times for both volumes are in the range of 1100-1300 s (Fig 2A), but without frequency modulation the buildup time increases to 1800 s (Fig 2B). Comparatively, SEOP can repeatedly cycle hyperpolarized doses of HP 129Xe every 18 minutes. Microwave frequency modulation also notably improves the polarization level by a factor 1.5 (Fig 2B). Magnetization values were measured on TEDLAR bags in the GE scanner with non-localised MRS of 30° pulses 2 s apart. The relaxation times T1 from SEOP and DNP were 17.4 ± 1.2 s and 20.1 ± 3.1 s (Fig 3). Using standard ventilation imaging protocol we qualitatively assess the B1 homogeneity of the coil. The images with two TEDLAR bags were first with HP xenon from the same SEOP batch (Fig 4A), then with one xenon DNP and one SEOP bag concurrently (Fig 4B). Coil sensitivity affects the signal intensity, as seen on the dual SEOP bags image (Fig 4A): the top bag’s marker has a SNR of 13.4, and the bottom bag has SNR of 9.5. The same marker distance in the DNP/SEOP image (Fig 4B) have SNR 2.8 and 6.8.

The T1 values are consistent with our previous measurement of T1=18 s at a benchtop NMR Spectrometer (SpinSolve, Magritek, Germany) [15]. Adjusting the SNR values (Fig 4) for the B1 sensitivity yields DNP=2.8/SEOP=9.7. However, this SNR difference (a factor 3.4) is almost entirely explained by the difference in enrichment (factor 3.3) between the SEOP prepared batch (86% 129Xe) and the DNP prepared batch (26% 129Xe). The bags have different shapes and proximities to the coil in the two experiments, making an exact marker match impossible. However, slight differences in marker position in the high-intensity areas only give minor differences in the SNR comparison. Using enriched 129Xe in the DNP preparation will lead to equivalent polarization and SNR between the two hyperpolarization techniques.

The implementation of xenon DNP at a commercial polarizer, including the sublimation equipment, yielded hyperpolarized xenon gas with an SNR in the range of the conventional SEOP hyperpolarization method. This makes DNP a potential alternative to hyperpolarize 129Xe in facilities without access to SEOP.
Emma WISTRÖM (Lausanne, Switzerland), Jean-Noël HYACINTHE, Esben SOVSO SZOCSKA HANSEN, Michael VAEGGEMOSE, Rolf GRUETTER, Christoffer LAUSTSEN, Andrea CAPOZZI
11:04 - 11:06 #47635 - PG135 To Pool or Not to Pool? Comparability of Multi-Protocol Ultra-High-Resolution qMRI in Healthy Brain Aging.
PG135 To Pool or Not to Pool? Comparability of Multi-Protocol Ultra-High-Resolution qMRI in Healthy Brain Aging.

High resolution imaging associated with ultra-high field (UHF) MRI provides promising advances for brain imaging. A particularly powerful UHF tool is quantitative MRI (qMRI) which aims to remove the protocol dependency by measuring parameters related to the biophysical properties of the tissues. Few studies have employed large cohorts to infer age-related changes of UHF qMRI parameters [1–4]. A limitation of existing studies is that each has been restricted to its own scan protocol. This constrains further expansion of the cohorts that could be done by pooling multiple datasets. We combine an open UHF qMRI dataset [1] with locally-acquired data and explore how pooling affects the observed age dependencies, and which biases occur between protocols. We focus on small subcortical structures as their delineation is almost exclusive to UHF MRI.

The sample comprised three cohorts of healthy subjects from different sources referred as AHEAD, sTx-MPM and pTx-MPM. The AHEAD data came from an openly available dataset [1] previously acquired on a Philips Achieva 7T. The other two cohorts’ data sources were the studies conducted at local site on a 7T Siemens Terra. The total dataset comprised 223 subjects (128F, 95M, mean 44.9 y). The AHEAD study (60F, 45M, mean 42.4 y) used a 1-Tx/32-Rx coil and an MP2RAGEME acquisition [5] with two inversion times (TI1/TI2 670.0/3675.4 ms), 4 echoes (TE of 3.0/11.5/19.0/28.5 ms), and SENSE acceleration with R=2 in one direction. No B1 mapping was performed. The sTx-MPM study (53F, 32M, mean 48.6 y) employed a 1-Tx/32-Rx coil and an MPM protocol [6] with three (T1-, PD-, MT-weighted) whole-brain 3D FLASH multi-echo sequences (TR 19.5 ms, FA PDw/MTw/T1w 5/5/20°, 6 echoes for PDw and T1w, TE 2.3 to 14.2 ms, and same first 4 echoes for MTw, GRAPPA acceleration in two directions with R=2 in each, and a 4 ms, 140° Gaussian MT-pulse, 2 kHz off-resonance. SE-STE-EPI was used for B1 mapping [7]. The pTx-MPM study (15F, 18M, mean 43.4 y) adhered to a similar protocol, but used a 8-Tx/32-Rx coil, kt-points excitation pulses [8], a 4 ms, 130° Gaussian-shaped MT-pulse, 3 kHz off-resonance, and AFI based B1 mapping [9]. The AHEAD pipeline comprised the LCPCA denoising [10], standard MP2RAGE calculation of the T1 [11], single-exponential fitting of the echo decay for the R2*, and TGV-QSM [12]. The output maps (R1, R2*, and QSM) were then used for the Multi-contrast Anatomical Subcortical Structures Parcellation (MASSP) [13] to provide the ROI for statistical analyses. The data in sTx-MPM and pTx-MPM cohorts were processed through similar pipelines comprising LCPCA denoising, hMRI-toolbox [14] for quantitative parameter calculation [14], and MASSP. Potential errors were assessed via calculating the number of non-unique R2* values and entropy [15] in the ROI. Linear models were built for each of the median qMRI metrics in each subcortical ROI with age, age2, and sex being the regressors [1–3]. Significance of the observed age dependency, protocol-related bias or age-protocol interaction was determined at a false discovery rate-corrected [16] threshold of 0.05.

High resolution (0.6 mm) maps of qMRI parameters (R2*, PD, and R1) were obtained, allowing parcellation and ROI volume calculation (Fig 1). Quality assurance has suggested excluding the ventricles and few subjects per ROI from further analyses (Fig 2). The GLM analyses showed significant age and age2 dependency in R1, R2* and subcortical ROI volume for most ROIs. Most of the models indicated significance in protocol-related variable and interactions between protocol- and age- related variables (Fig 3).

Age-related changes in the pooled dataset exhibit the inverted U-shape dependence in all qMRI metrics, which arises from age-related myelin loss and iron accumulation in the brain tissue [17]. Comparing AHEAD and local data suggests compatibility of age-related profiles for R2* and ROI volume measurements, having the lowest number of significant age-protocol interactions, and less so for the R1 measurements. Generally, the age dependencies (i.e., the GLM slopes) stay consistent, but the absolute values (i.e., the GLM intercepts) vary across protocols. R1 was strongly (up to 31% difference) affected by the protocol, potentially due to difference in B1 or bias in B1 measurements [14]. The B1 mapping exhibited systematic B1 difference (Fig 4) in average B1 between sTx and pTx protocols, which could be caused by biases in AFI and SE-STE-EPI B1 mapping [18], resulting in systematic R1 difference. The R2* calculation reduced dependency on B1 mapping can explain it exhibiting less biases and interactions in the pooled dataset, making it stable across UHF qMRI protocols.

Pooling UHF qMRI datasets reveals inconsistency in absolute values of qMRI metrics across different protocols due to biases in B1 mapping. R2* and ROI volume display more inter-protocol stability, but R1 can also be used for determining age-related dependencies if protocol difference is accounted for.
Mikhail ZUBKOV (Liege, Belgium), Kerrin PINE, Bazin PIERRE-LOUIS, Puneet TALWAR, Nasrin MORTAZAVI, Solène DAUBY, Chloé GERON, Elise BECKERS, Laurent LAMALLE, Christophe PHILLIPS, Fabienne COLLETTE, Pierre MAQUET, Emilie LOMMERS, Anneke ALKEMADE, Nikolaus WEISKOPF, Evgeniya KIRILINA, Gilles VANDEWALLE
11:06 - 11:08 #47662 - PG136 Automatic radiology assessment of lumbar degenerative diseases.
PG136 Automatic radiology assessment of lumbar degenerative diseases.

Low back pain is the leading cause of disability worldwide, affecting over 619 million people according to the World Health Organization [1]. Despite this, current assessments largely rely on qualitative visual inspection of lumbar MRI scans, which is time-consuming and suffers from inter-rater variability [2]. Classifying the severity (normal/mild, moderate, and severe) of common lumbar degenerative diseases including left/right neural foraminal stenosis (NFN), spinal canal stenosis (SCS), and left/right subarticular stenosis (SAS) remains difficult. While prior work has proposed solutions to these tasks [3–5], these approaches typically require training a dedicated segmentation model for each pathology to extract regions of interest (ROIs), limiting their use. We propose three severity classification models for these diseases as part of the RSNA 2024 Lumbar Spine Degenerative Classification Kaggle Challenge [6]. Our approach is based on a novel preprocessing pipeline that eliminates the need to train specialized segmentation models for ROI extraction, resulting in a more efficient and generalizable solution.

We developed two deep learning based Multiple Instance Learning (MIL) [7] models (described in figure 1) and one ResNet50 model [8] to predict disease severity for the five lumbar intervertebral discs, resulting in 25 predictions per patient (5 vertebral levels per disease: NFN_R, NFN_L, SAS_R, SAS_L, SCS). These models were trained on the RSNA challenge dataset, which includes nearly 2,000 patients with three MRI sequences—sagittal T1w, sagittal T2w, and axial T2w—collected from eight sites across five continents. The dataset was annotated by ASNR radiologists. The analysis pipeline is summarized in figure 2. Training the models required robust preprocessing to extract meaningful ROIs. We used the TotalSpineSeg [9] model to automatically segment intervertebral discs on sagittal scans. These segmentations were then aligned with axial acquisitions using the Spinal Cord Toolbox [10]. This process enabled accurate extraction of 3D ROIs centered on the discs, leveraging the volumetric nature of MRI data and ensuring spatial consistency across sequences. Each of the three architectures was trained to predict a specific condition. The models operate at the disc level, processing a single disc ROI at a time. For prediction, the SCS and SAS models utilized the MIL architecture and the axial T2w sequences of each patient, while the NFN model utilized the ResNet50 architecture and sagittal T1w sequences. All models were optimized using the challenge-provided weighted cross-entropy loss function. The outputs from each model are then aggregated to produce severity scores for each pathology across each lumbar level. Two features of the analysis pipeline were evaluated: (i) The accuracy of ROI selection based on the automatic spine segmentation and (ii) the performance of the model’s predictions. For ROI validation, we used radiologist-provided annotation points to verify whether they were included within the extracted ROIs. This evaluation was only conducted for NFN, as the annotations for SAS were provided on sagittal T2 images, whereas our pipeline used axial T2 scans. As well, the SCS annotations were on axial DICOM images, but the NIFTI conversion process changed the structure by separating the multiple acquisition, preventing their use in validation. The quality of the model predictions was evaluated using the official Kaggle challenge metric. Our complete pipeline was executed on Kaggle’s servers against a hidden test set, and performance was quantified based on the resulting cross-entropy loss.

Our pipeline got an accuracy of 0.97 for NFN ROI extraction. Our models achieved a score of 0.509 on kaggle, placing us in the top 100 out of 1,875 teams. For reference, the top-performing team achieved a score of 0.389.

Our 3D ROI extraction pipeline based on TotalSpineSeg proved to be robust and highly effective. This approach generalizes well and could be applied to other use cases without additional annotations or training, making it a robust and reusable tool in medical imaging workflows. Our model’s prediction score reached 100 out of 1,875 participants, without requiring post-hoc adjustments on the hidden test set (e.g., manually scaling class probabilities to improve leaderboard scores, something commonly done by top teams on Kaggle challenges). Future work will involve moving beyond challenge-specific metrics to evaluate our approach more comprehensively, using ROC curves and other clinically relevant performance indicators.

Our approach demonstrates that accurate and generalizable 3D ROI extraction is feasible without model training or manual annotations. By leveraging anatomical structure and spatial priors, we enable more robust medical image analysis. Future evaluations using ROC curves will offer a more transparent and clinically relevant evaluation of our pipeline's strengths.
Thomas DAGONNEAU (Montréal, Canada), Abel SALMONA, Nathan MOLINIER, Julien COHEN-ADAD
11:08 - 11:10 #46148 - PG137 Comparison of Capabilities for Regional Perfusion and Functional Loss Evaluations among ECG- and PPG-Gated PREFUL MRIs and Dynamic CE-Perfusion MRI.
PG137 Comparison of Capabilities for Regional Perfusion and Functional Loss Evaluations among ECG- and PPG-Gated PREFUL MRIs and Dynamic CE-Perfusion MRI.

Pulmonary functional MRI has been developed and tested by dynamic contras-enhanced (CE-) first-pass perfusion MRI, non-CE-perfusion MRI, hyperpolarized noble gas MRI and oxygen-enhanced MRI in patients with different pulmonary diseases in the last few decades1-3. Since 2009, Fourier-decomposition MRI or phase-resolved functional lung (PREFUL) MRI with electrocardiogram (ECG) was started to test and tried to clinically set as new pulmonary functional MRI as having the potential to assess regional ventilation and perfusion changes in different lung diseases at same time, although this technique is available in several institutions4-6. Recently, we developed PREFUL MRI by ECG and photoplethysmography (PPG) with Canon Medical Systems Corporation and started to test in routine clinical practice. However, no one has directly compared and quantitatively assessed perfusion-weighted PREFUL MRIs (PW-MRIs) with ECG and PPG with quantitatively assessed dynamic CE-perfusion MRI in thoracic oncologic patients with and without emphysema or pulmonary fibrosis. We hypothesized that PW-MRIs with ECG and PPG as well as dynamic CE-perfusion MRI could evaluate quantitatively regional perfusion and pulmonary functional loss in thoracic oncologic patients underlying different lung conditions. The purpose of this study was to directly compare the potential for regional perfusion and pulmonary functional loss assessments among quantitatively assessed PW-MRIs with ECG- and PPG and dynamic CE-perfusion MRI in thoracic oncology patients with and without emphysema or pulmonary fibrosis.

25 surgical treatment candidates due to pathologically diagnosed lung cancers or mediastinal tumors were prospectively examined thin-section CT, ECG- and PPG-gated PW-MRIs and dynamic CE-perfusion MRI at a 1.5T MR system (Vantage Orian, Canon Medical Systems Corporation, Otawara, Tochigi, Japan) and pulmonary function test including %VC, FEV1% and %DLCO/VA. Then, quantitatively assessed regional perfusion maps were generated by pixel-by-pixel analyses from each MR data by means of our proprietary software provided by Canon Medical Systems. For quantitative evaluation of dynamic CE-perfusion MRI evaluation, dual-input maximum slope model was used in this study. To determine regional perfusion, same region of interests (ROIs) were placed and copied over peripheral and central lung zones in each lung field within both lungs on each quantitative perfusion map at the same proprietary software. Finally, overall perfusion was determined as the averaged value from all ROI measurements in each patient. To determine the relationship of regional perfusion between each method, Pearson’s correlation was performed. To compare mean differences of regional perfusion between each two methods, Student’s t-test were performed. Then, the Bland-Altman analyses were performed to determine the limits of agreements between each two methods. To compare perfusion difference among underlying lung conditions, regional perfusions from each method were compared among normal lung, emphysema and fibrosis by Student’s t-test. To assess pulmonary functional loss evaluation capability on each perfusion method, overall perfusion was correlated with %VC, FEV1% and %DLCO/VA by Pearson’s correlation.

Representative cases are shown in Figure 1. There were significant correlations between each method (PW-MRI with ECG vs. PW-MRI with PPG: r=0.74, p<0.0001; PW-MRI with ECG vs. dynamic CE-perfusion MRI: r=0.33, p<0.0001; PW-MRI with PPG vs. dynamic CE-perfusion MRI: r=0.24, p<0.0001) (Figure 2). Mean differences between each PW-MRI and dynamic CE-perfusion MRI were significantly larger than that between both PW-MRIs (p<0.05). The limits of agreements between both PW-MRIs were markedly smaller than those between each PW-MRI and dynamic CE-perfusion MRI (Figure 3). There were significant differences of regional perfusion between normal lung and emphysema or fibrosis on each PW-MRI (p<0.0001), although dynamic CE-perfusion MRI showed significant differences of regional perfusion between emphysema and normal lung or fibrosis (p<0.0001) (Figure 4). When correlated between each overall perfusion and pulmonary functional test results, there were significant positive correlations between pulmonary function test results and overall perfusion determined from PW-MRIs with ECG (%VC: r=0.55, p=0.004; FEV1%: r=0.53, p=0.007) and PPG (%VC: r=0.66, p=0.0003; FEV1%: r=0.54, p=0.005; %DLCO/VA: r=0.4, p=0.04).

PW-MRI with ECG and PPG had equal to or better potential than that with dynamic CE-perfusion MRI for regional perfusion and pulmonary functional loss assessments in thoracic oncology patients with different underlying lung conditions.
Yoshiharu OHNO (Toyoake, Japan), Alicia PALOMAR-GARCÍA, Ozaki MASANORI, Bruno TRIAIRE, Kaori YAMAMOTO, Natsuka YAZAWA, Yuichiro SANO, Maiko SHINOHARA, Masato IKEDO, Masao YUI, Takahiro UEDA, Masahiko NOMURA, Takeshi YOSHIKAWA, Daisuke TAKENAKA, Masahiro ENDO, Yoshiyuki OZAWA
11:10 - 11:12 #46372 - PG138 On the effect of anesthesia-driven blood velocity and T₂ changes on labeling efficiency in pCASL measurements in mice.
PG138 On the effect of anesthesia-driven blood velocity and T₂ changes on labeling efficiency in pCASL measurements in mice.

Among arterial spin labeling (ASL) perfusion MRI techniques, pseudo-continuous ASL (pCASL) has emerged as a reliable and non-invasive method for quantifying cerebral blood flow (CBF) [1]. However, accurate CBF quantification depends critically on several physiological and technical factors, including labeling efficiency (IE), which can introduce substantial bias if not taken into account [2]. Optimizing pCASL for preclinical functional imaging presents unique challenges, particularly due to the variety of anesthesia protocols and associated effect on CBF [3]. While it is generally assumed that phase optimization, which is B0 and B1-dependant, can be performed at the beginning and remains stable for the duration of the exam [4], IE may vary as a result of changes in blood velocity and T₂ relaxation time [5]. Notably, increased arterial flow velocity in humans has been associated with reduced IE, thereby affecting sensitivity and complicating quantification efforts [6]. In this study, we examine the impact of different anesthesia and air/O₂ mixtures on IE and CBF in mice, and disentangle the respective contributions of blood velocity and T₂-related changes to IE degradation.

Wild-Type male mice (7-9 months) were scanned in an 11.7T Bruker MRI with a 72-mm quadrature volume coil and a 10-mm single-loop surface coil. Exp.1 (n=2): To assess anesthesia-induced changes in IE and CBF, anesthesia was initially set to 1.5% isoflurane (iso) in a 1:1 air/O₂ mix, then switched to subcutaneous infusion of medetomidine (med- 0.2 mg/kg/h) with 0.8% iso (transition within 10 min). IE was continuously measured in the carotid arteries (3 mm from the labeling plane, figure 1a-b) before, during, and after the transition (figure 1c), using a ASL-encoded flow-compensated FLASH sequence [7]. pCASL parameters were: B1avg=3.5 µT, Gmax/Gave=90/10 mT/m, labeling duration τ=300 ms, no post-labeling delay (PLD). Exp.2 (n=3): To investigate the effect of blood T₂ changes on IE, gas mixture was alternated between 1:1 air/O₂ mix and 100% O₂ (figure 2a). Exp.3 (n=2): To determine whether IE changes were velocity-driven, blood velocity in the carotids was measured at the same location (figure 2b-c), using a phase-contrast MRI sequence (FlowMap, TR/TE=60/3 ms). Exp.4 (n=4): To examine the impact of anesthesia and gas mix on CBF, pCASL scans were performed (figure 3) using a pCASL-RARE sequence (30 repetitions, TE/TR=22/5000 ms). pCASL parameters matched IE parameters with τ=3000 ms and PLD=300 ms. The imaging plane was set 10mm downstream from the labeling plane. All CBF were computed with a Buxton model [8] and using subject-specific T₁ maps and IE values. Blood magnetization profiles along the flow direction were simulated [5] with blood T₁=2800 ms [7] and pCASL parameters described below, for a range of blood T₂ values and flow velocities, and corresponding IE were extracted (figure 4).

With air/O₂, IE was 0.82±0.03 under iso, and decreased to 0.57±0.05 after switching to med-low iso (figure 1c). Lowering Gmax/Gave to 45/5 mT/m worsened the effect, while increasing to 135/15 mT/m offered no improvement (data not shown). Simulations showed that IE increases with blood T₂ and velocity, but show less dependency to blood velocity within the range of values in this study (figure 4). Regardless of the gas mixture, transition from iso to med resulted in a decrease in carotid blood velocity from 147±6 mm/s to 91±7 mm/s (mean ± SEM, figure 2b). With O₂ only, IE did not decrease after med infusion. Switching to air/O₂ caused a drop in IE from 0.82±0.02 to 0.55±0.07, which was reversed upon reintroduction of O₂ only (figure 2a). A ~40% decrease in CBF was observed under the med+air/O₂ condition. However, with 100% O₂, no significant change in CBF was observed between anesthesia conditions (figure 3).

The observed decrease in IE is most likely due to a combination of blood T₂ shortening and, to a lesser extent, to blood velocity decrease, as supported by simulation and experimental data (Exp.2-3). T₂ changes are likely driven by reduced blood oxygenation under the med+air/O₂ condition [9]. However, administration of 100% O₂ appears to restore IE, likely due to an increase in blood oxygenation and, consequently, blood T₂. Yet, the CBF increase under med+100% O₂ was unexpected as appropriate account of the IE value should prevent any bias. While the lower CBF value observed with med+air/O₂ compared to iso only aligns with previously reports [3], hyperoxia was reported to induce no change in global CBF [10]. We cannot exclude that other factors may affect quantification in these conditions.

These results emphasize that changes in blood velocity and oxygenation due to anesthesia and carrier gas can strongly affect IE, and thus ASL signal to noise and absolute CBF quantification. Although less critical for comparative studies employing consistent anesthetic protocols, awareness of these effects remains essential to minimize bias and ensure robust interpretation.
Sophie MALAQUIN (Fontenay aux Roses), Lydiane HIRSCHLER, Celine BALIGAND
11:12 - 11:14 #47398 - PG139 RARE-Readout pCASL for Quantitative Functional CBF Imaging in Rats at 11.7T: Overcoming EPI Artifacts in Post-Surgical Somatosensory Cortex.
PG139 RARE-Readout pCASL for Quantitative Functional CBF Imaging in Rats at 11.7T: Overcoming EPI Artifacts in Post-Surgical Somatosensory Cortex.

Somatosensory-evoked fMRI studies are traditionally conducted using an EPI readout for fast acquisition and high T2* contrast. In rodent models of brain pathology, stereotaxic surgery is often required for the delivery of viral vectors, pharmacological agents, or the implantation of devices, which can make echo-planar imaging (EPI) particularly challenging. Indeed, EPI images are strongly affected by the large magnetic susceptibility differences surrounding scare tissue, or implants. In these conditions, and in particular at higher magnetic field, strong artifacts appear that may affect the evaluation of the local functional response [1-3]. Moreover, while classic BOLD fMRI is very sensitive to vascular reactivity, it is not quantitative. Its analysis relies on statistical parametric mapping, thresholding and report the “activated” pixels count [4]. On the other hand, arterial spin labeling (ASL) MRI is a quantitative approach providing a measure of cerebral blood flow (CBF). Only a few studies have applied functional ASL MRI in rodent [5,6], and an EPI readout was used. In this work, we combined a pCASL module [7] with fast spin echo readout (RARE). We show that it can be used in animals after they underwent surgery in the somatosensory cortex to study the CBF response to electrical paw stimulation.

Four female Wistar rats received bilateral stereotaxic injections of an AAV expressing mCherry (2/DJ, CBA promoter) into two somatosensory cortical sites (S1HL/S1FL), serving as a control to reproduce typical AAV delivery procedures, without any functional gene modulation. Four weeks post-surgery, rats were scanned on an 11.7 T Bruker system with a 72 mm volume coil and a ¹H surface coil, under a mix of medetomidine (0.3 mg.kg⁻¹.h⁻¹) and 0.5 % isoflurane delivered in 100% O2. The pCASL-RARE sequence was written in Paravision 6.1. After global shimming, a series of pCASL pairs of images were acquired with 25 phase sweep steps (-15 to 360°) to determine interpulse phase correction (TR/TE = 2000/15 ms; 4 mm slice; 250×250 µm²; labeling time τ = 1500 ms; PLD = 200 ms; B1avg = 3.5 µT; Gmax/Gave = 90/10) [7]. Inversion efficiency (IE) was measured 5 mm downstream (TR/TE = 225/3.5 ms; 1 mm slice; τ = 200 ms). Unilateral fore- and hind-limb stimulation was used for all functional scans (1.75 mA, 50 ms pulses, 5 Hz; block paradigm 30 s ON/30 s OFF). Functional pCASL-RARE label and control images were alternately acquired for 2 blocks of 10 minutes, with an IE acquisition in between blocks (TR/TE = 5000/21 ms; τ = 2000 ms; PLD = 300 ms; 2 mm slice; resolution = 250×250 µm²). Inversion-recovery RARE images were used to compute T1 maps. Isoflurane was then switched off. Ten minutes later, BOLD fMRI was acquired first with GE-EPI (TR/TE = 1000/15 ms; 1 shot; 128×64 matrix; 14 slices; thickness 0,75 mm; FA = 60°, 10 min) then with SE-EPI (TR/TE = 1000/18 ms; 2 shots; 10 min). Data were analyzed in Matlab. All CBF were computed with a Buxton model [8] and subject-specific IE values. BOLD fMRI data were processed in SPM12, with motion correction followed by GLM analysis (p < 0,001 for GE-EPI and p < 0,05 for SE-EPI).

As expected, GE and SE-EPI BOLD images were strongly impacted by the injection procedure (Fig 1). Two-segment SE-EPI mitigated the geometric distortion and improved images quality, however decreasing sensitivity to BOLD contrast compared to GE-EPI (119 ± 59 activated voxels for GE-EPI vs. 41 ± 32 for SE-EPI). GE-BOLD data showed that the functional vascular response spanned over 3 mm in the slice direction, supporting our choice of a 2 mm slice thickness for pCASL-RARE acquisitions. Surgery-induced artifacts were fully abolished in the RARE images (Fig 1). CBF maps averaged over the “ON” periods showed an increased perfusion localized in the contralateral somatosensory cortex compared to the “OFF” period (133 ± 21 vs. 115 ± 17 mL.100g-1.min-1, mean ± S.E.M, Fig 2), i.e. ∆CBF = 15.4 ± 1.6 %.

These preliminary results show the feasibility of functional pCASL-RARE. Despite variability in cortical CBF in the OFF condition in our small animal group, ∆CBF fell within a narrow range (12-20%). This value was consistent with previous reports [5,6], although direct comparison is limited due to differences in anesthesia protocols. It is possible that our current manual ROI selection included voxels outside the “activated area”, thereby underestimating ∆CBF. More work is underway to refine post-processing, confirm the extent of the CBF increase in our conditions, and establish reproducibility in a larger group of animals.

pCASL combined with a RARE readout provided distortion-free quantification of the vascular response induced by electrical paw stimulation, even post-surgery in the S1 cortex. This approach could be used in other cortical surgery models or fiber implants for functional studies at high magnetic field and is a quantitative alternative to BOLD contrast to assess the vascular response to neural activation.
Cameron HERY, Sophie MALAQUIN (Fontenay aux Roses), Lydiane HIRSCHLER, Celine BALIGAND
11:14 - 11:16 #47478 - PG140 Superselective Arterial Spin Labelling revealed chronic perfusion alterations in patients with internal carotid artery stenosis.
PG140 Superselective Arterial Spin Labelling revealed chronic perfusion alterations in patients with internal carotid artery stenosis.

Cerebrovascular diseases (CVD) are a major health issue in developed countries, which are especially associated with increased risks of ischemic stroke [1, 2]. While CVD typically induce narrowing of the brain feeding arteries and hypoperfusion in the dependent vascular territories, there are protective pathways such as collateral blood flow over the circle of Willis [3, 4]. Therefore, treatment decisions require a high degree of individualized diagnosis to assess the perfusion status correctly. Currently, vessel-selective imaging is clinically performed using catheter-based digital subtraction angiography, which, however, comes with intervention risks and the need for hospitalization [5]. A non-invasive alternative for individual mapping of vascular perfusion territories is superselective pseudocontinuous Arterial Spin Labelling (ss-pCASL), which allows selective labelling of specific brain feeding arteries [6, 7]. While previous studies focused on qualitative description of perfusion alterations [7-9] or reported inconclusive findings regarding the shift of territories [10], the purpose of this work was to implement a quantitative assessment of perfusion territory shifts based on ss-pCASL. Therefore, we acquired data in two patient groups: patients with atherosclerosis-induced internal carotid artery stenosis and younger patients with moyamoya disease. We hypothesized that asymptomatic a-ICAS may induce perfusion territory shifts, and that a similar method could be applied for moyamoya disease.

We acquired data in 23 subjects on a 3T MRI (Ingenia Elition X, Philips, Netherlands), from which we included 8 patients with atherosclerosis-induced asymptomatic, unilateral and high-grade ICAS (a-ICAS, 69.8±6.2y, 5f), 3 moyamoya patients (31.7±3.7y, 3f), and age-matched healthy controls (HC, n=20, 69.2±5.8y, 12f); 3 subjects didn’t meet the inclusion criteria. The multi-parametric MRI protocol (Fig.1) included ss-pCASL of the left and right internal carotid artery, time of flight angiography and structural T1w-MRI. Image processing was based on SPM12 [11] and MATLAB (v2021b, The MathWorks Inc., USA). Based on ss-pCASL perfusion maps, we semi-automatically segmented vascular perfusion territories using Vinci (v5.06, MPI, Germany). From those territory masks, we derived three quantitative parameters: 1. fractional volume (in comparison to whole brain volume) 2. territorial shift (volume fraction comprised in the opposite hemisphere) 3. overlap with an atlas of vascular territories [12] (DICE coefficient, 0
Example data (Fig.2) of a right-sided a-ICAS patient (patient 1, left) show a marked shift in perfusion, where hypoperfused anterior regions of the ipsilateral hemisphere (A) are supplied from the contralateral side (D). Perfusion territory segmentations are shown (B, E), with the shifted region indicated in red (E). Contralateral hemispheres show a larger overlap with the atlas (F vs C). Similarly, results can be seen in data of a moyamoya patient (patient 2, right), where hypoperfused regions of the affected side (a) are perfused from the contralateral hemisphere (b). Statistical evaluations (Fig.3, Tab1.) for a-ICAS show significantly larger volume (A, 31.10±6.20% vs. 13.24±9.00%), shift (B, 5.58±5.55% vs 0.72±1.76%), and overlap (C, DICE,contra=0.67±0.14 vs. DICE,ipsi=0.45±0.25) from contralateral hemispheres, while HCs’ data remain symmetrical. Similar results can be found in moyamoya (Tab.1.).

As hypothesized, ss-pCASL-based vascular territory mapping revealed and allowed to quantify shifts of vascular perfusion territories. With respect to a-ICAS this is an interesting finding as the literature reports are mixed: while multiple studies reported shifts in highly stenosed and symptomatic patients [9, 13], other studies found insignificant shifts for asymptomatic patients [10]. Most likely, this was due to the inclusion of lower degrees of stenosis, as higher degrees of stenosis are more likely to be associated with a stronger shift of perfusion territories [13]. This also agrees with findings in a similar cohort, where shifts of border zones of vascular territories were detected based on dynamic susceptibility MRI-based time to peak maps [14, 15]. With respect to moyamoya induced ICAS, our results agree with literature findings from selective MR angiography [16], blood oxygen level dependent (BOLD) MRI and ASL reactivity studies [17, 18], or after revascularization therapy [19].

In conclusion, our results revealed chronic perfusion alterations induced by a-ICAS and moyamoya disease, which manifests as a shift in vascular territories. These shifts can be reliably quantified using ss-pCASL.
Gabriel HOFFMANN (Munich, Germany), Miriam REICHERT, Jens GÖTTLER, Michael HELLE, Lena SCHMITZER, Moritz HERNANDEZ PETZSCHE, Claus ZIMMER, Christine PREIBISCH, Michael KALLMAYER, Kornelia KREISER, Nico SOLLMANN, Hans LIEBL, Stephan KACZMARZ
11:16 - 11:18 #47847 - PG141 Data-driven cerebrovascular reactivity and vascular lag mapping in gliomas with multi-echo BOLD fMRI.
PG141 Data-driven cerebrovascular reactivity and vascular lag mapping in gliomas with multi-echo BOLD fMRI.

Cerebrovascular reactivity (CVR) measures the brain's ability to regulate blood flow in response to variations in arterial CO2 levels [1]. Performing a breath-holding (BH) task while collecting BOLD fMRI data is a simple and non-invasive approach that ideally uses the end-tidal pressure of CO2 (PetCO2) signal to estimate maps of CVR in units of %BOLD/mmHg and vascular delay maps in seconds [2]. These maps can provide clinically relevant in glioma patients to examine neurovascular uncoupling or delineate regions affected by the tumour due to abnormal vasculature [3][4]. However, obtaining reliable PetCO2 recordings is challenging due to task compliance and/or equipment availability[5]. Here, we investigate whether Rapidtide, a data-driven approach for mapping vascular delay using a refined average brain signal, can generate reliable CVR and vascular lag maps when PetCO2 quality is insufficient in glioma patients.

24 glioma patients (28-69 y.o.) with diverse tumour characteristics (Fig. 1) were scanned (3T Siemens PrismaFit, 64-channel head coil) during a BH task, including 8 trials with expirations before and after the apnea [6,7]. MRI data acquisition: ME-fMRI data was acquired with a T2*-weighted gradient-echo multi-echo EPI sequence (TEs=10.6/28.69/46.78/64.87 ms, TR=1.5s, 2.4mm isotropic voxels, SMS=5, GRAPPA=2, PF=6/8, 340 scans). T1-w MPRAGE (pre/post-Gd) and T2-w FLAIR images (voxel size=1mm3) were also acquired. Physiological data acquisition: Exhaled CO2 and O2 levels were recorded via a nasal cannula with an ADInstruments ML206 gas analyzer connected to an MP160 BIOPAC (freq = 40 Hz). PetCO2hrf signal generation: End-tidal CO2 peaks were manually identified using Peakdet [8], linearly interpolated (PetCO2 signal), convolved with the canonical HRF, and downsampled to TR (PetCO2hrf signal). ME-fMRI data preprocessing (AFNI): Volume realignment to the 1st echo single-band reference image was estimated and applied to all echoes. T2*-w echo-combination and ME-ICA with TEDANA [9] with manual evaluation of BOLD-related (accepted) and noise-related (rejected) independent components with RICA [11]. Spatial smoothing (FWHM=2mm) was applied. CVR data analysis: CVR and vascular delay maps were obtained using two methods: Phys2cvr [12] and Rapidtide [14,15]. Phys2CVR: A lagged regression analysis is applied using the PetCO2hrf regressor (61 shifts between -9 to 9 s, i.e. temporal shift=0.3 s), and the realignment parameters and their temporal derivatives, up to 4th-order Legendre polynomials, and the rejected ME-ICA time courses previously orthogonalized to the lagged PetCO2hrf signal and the accepted ME-ICA time courses as nuisance regressors [6]. The bulk shift was estimated via cross-correlation between the PetCO2hrf signal and the average signal of non-tumoral voxels. Rapidtide: Maps were obtained using an equivalent lagged correlation where the regressor of interest is defined as a band-pass filtered (0.009–0.15 Hz) version of the average whole-brain BOLD signal, and “despeckling” using a spatial median filter to correct erroneous delay estimates due to its inherent autocorrelation [5, 14].

Figure 1 provides a qualitative description of the BH task performance (based on CO₂ recordings and respiratory belt), and CVR/delay maps from both methods. Fifteen patients showed good task performance and adequate PetCO₂ signals. Of these, 13 had comparable CVR and delay maps with both methods, showing a decreased CVR and longer delays in tumour regions; two showed decreased CVR with both methods but no longer delays; and the remaining two showed no CVR or delay response with either method. Additionally, five patients exhibited a medium task performance (5/8 valid BH trials), showing decreased CVR in both methods, but only Rapidtide detected longer vascular delays in tumour regions in almost all cases (4 out of 5). Four patients showed poor PetCO₂ recordings despite having good respiratory belt signals (i.e. valid BH performance). In these cases, only Rapidtide captured decreased CVR and lag in tumour regions. Figure 2 presents a representative case with a good PetCO₂ signal, where both methods revealed decreased CVR and prolonged vascular delays in tumour regions. Figures 3 and 4 show cases with poor PetCO₂ signals, where only Rapidtide detected prolonged vascular delays in tumour-affected regions.

When PetCO₂ recordings are reliable, Rapidtide produces similar CVR and lag maps to those obtained with phys2cvr, although often yielding smoother and more robust maps. However, when PetCO₂ recordings are missing or of poor quality, Rapidtide becomes a reliable alternative to generate clinically relevant CVR and delay maps without requiring external physiological signals.

This study demonstrates the usefulness of Rapidtide, a data-driven lagged correlation method, to yield clinically relevant CVR and vascular lag maps with a feasible BH task in glioma patients, even in the absence or insufficient quality PetCO₂ recordings.
Cristina COMELLA LUENGO (Donostia-San Sebastian, Spain), Lia HOCKE, Stefano MOIA, Santiago GIL ROBLES, Iñigo POMPOSO, Manuel CARREIRAS, Ileana QUIÑONES, Cesar CABALLERO
11:18 - 11:20 #47034 - PG142 Oxygen-glucose index measurements in the rodent brain by 17O-MR at 11.7T.
PG142 Oxygen-glucose index measurements in the rodent brain by 17O-MR at 11.7T.

Understanding imbalances in oxygen and glucose metabolism is essential for exploring brain function and dysfunction. We previously developed a protocol to non-invasively and quantitatively measure the cerebral metabolic rate of oxygen (CMRO₂) by 17O-MRI in mice [1]. A concurrent assessment of glucose consumption is needed to fully capture brain metabolism. The gold standard for measuring cerebral glucose metabolism (CMRglc), 18FDG-PET, suffers from high inter-subject variability in rodents and is incompatible with simultaneous 17O measurements. This study explores an alternative approach based on the detection of 17O-labeled water (H₂¹⁷O) [2] produced during glycolysis (enolase step, Figure 1) following the injection of glucose-6-17O (17O-Glc). We achieved simultaneous monitoring of H₂¹⁷O and 17O-Glc kinetics, and enriched previous quantification model [2] to include glucose transport. In addition, the feasibility of measuring CMRO₂ and CMRglc in a single exam was demonstrated, and the oxygen-glucose index (OGI) was measured.

Experimental protocol: Non-localized 17O MRS was performed on a 11.7T Bruker scanner using a 10 mm-diameter 17O surface coil and a 72mm-diameter 1H-volume coil. Mice were anesthetized with 1.5–1.75% isoflurane and received an intravenous tail vein injection of 17O-Glc dissolved in 0.9% NaCl over 110s (35% enriched, 170μL/min, Nukem). Initial experiments were performed using a 2.5 mg/g dose (n=2), based on a previous report [2]. To mitigate the hyperglycemic conditions, the dose was reduced to 1.25 mg/g (n=3). After global shimming, a series of 17O spectra were acquired with a 6s time resolution (TR= 15ms; 10 μs broad pulse). A subset of 3 mice underwent OGI measurements. After a 5-10 min baseline, mice were transiently delivered 17O2 gas (46% enriched, 50mL/min, Nukem) over 3 min [1], followed by an injection of 17O-Glc 20 min later. Data processing and modeling: Spectra were processed with Matlab. The injected glucose contributed noticeably to the total MR signal, producing a small peak at 10 ppm from water. To disentangle the contributions of H₂¹⁷O and 17O-Glc, each spectrum was fitted using a Lorentzian model for water and a Gaussian model for glucose. This enabled simultaneous extraction of the time courses of H₂¹⁷O production and 17O-Glc dynamics. The glucose curve was used to estimate the tissue input function (Ctissue) based on an irreversible two-compartment kinetic model (Sokoloff’s). We assumed 5% blood volume and we used the plasma input function (Cplasma) from [2]. Subsequently, a 3-phase model including CMR and flux parameters (KG and KL) [2,3]—was applied to the H₂¹⁷O curve to compute the apparent CMRglc (Figure 2). For OGI data, a 5-phase model was applied (pre-, during and post 17O₂ inhalation, then during and after glucose injection). Normalization to baseline signal assuming [H2O]brain= 16.07 µmol yielded results in µmol/g/min.

17O-Glc signal increased immediately upon injection (Figure 3). Using Sokoloff’s model, Ctissue was successfully recovered, and could be used as an input to fit the 3-phase model to H217O signal (Figure 3B). Despite a reduced glucose signal amplitude, half-dose data were exploitable and yielded CMRglc values consistent with higher dose results. A systematic ~5 min delay in H₂¹⁷O signal increase was observed post glucose injection, similar to that reported by Borowiak et al. [2]. Part of this delay, attributed to tissue uptake, was accounted for by Sokoloff’s model, reducing the delay correction to 2 min. The resulting fit yielded CMRglc = 0.22 ± 0.05 µmol/g/min (n=5). In OGI experiments (Figure 4), the 5-phase model yielded CMRglc = 0.47 ± 0.07 and CMRO2 = 2.26 ± 0.45 µmol/g/min, i.e. OGI = 4.81 ± 0.23 (n=3). Separate processing of CMRO2 and CMRglc data with 3-phase models resulted in lower CMRglc (0.28 ± 0.07 µmol/g/min) but did not affect CMRO2 (2.24 ± 0.45 µmol/g/min).

Previous CMRglc reports in rodents, mostly from 18FDG-PET studies [4-6], display variability [0.2 – 0.7 μmol/g/min]. Our results, measured at the enolase step, fall within this range. 18FDG-PET probes hexokinase, therefore providing a theoretical upper limit in the context of our study, due to possible diversion of glucose towards anabolic pathways upstream from enolase (Figure 1). The difference in CMRglc values obtained with the 3-phase and the 5-phase model may result from improved estimation of KL -closely coupled with CMRglc- in the 5-phase model, where KL is jointly constrained by CMRO₂ and CMRglc data. The remaining delay observed after 17O-Glc injection may reflect unmodeled physiological aspects. OGI values were lower than the theoretical value of 6 (complete glucose oxidation), as frequently reported in humans [7]. Here, isoflurane anesthesia, known to enhance brain lactate concentration [8,9], may further increase this decoupling.

This study demonstrates the feasibility of extracting and modeling 17O-Glc kinetics, and shows the potential of 17O-MRS for OGI estimation.
Lucie RANNO-CHARRIER (Paris), Adélaïde PATOUILLET, Sophie MALAQUIN, Julien VALETTE, Celine BALIGAND
11:20 - 11:22 #46639 - PG143 Iron concentration and longitudinal relaxation rate (R1) in the post-mortem human brain: Insights from quantitative MRI and ICP-MS.
PG143 Iron concentration and longitudinal relaxation rate (R1) in the post-mortem human brain: Insights from quantitative MRI and ICP-MS.

Brain iron, primarily stored in ferritin and hemosiderin, plays crucial roles in cellular metabolism and accumulates with age (1,2), particularly in deep gray matter structures (3,4), such as the basal ganglia. While its influence on transverse relaxation times (T2, T2*) and quantitative susceptibility mapping (QSM) has been extensively investigated (5,6), its effect on the longitudinal relaxation rate (R1 = 1/T1) is still debated: while some studies have shown correlations with R1 in iron-rich regions (7–10), others failed to detect such relationships(11,12). This study explores the relationship between regional iron concentration and R1 in unfixed post-mortem human brains using quantitative MRI and chemical quantification via inductively coupled plasma mass spectrometry (ICP-MS).



Thirteen post-mortem human brains (mean age = 65.9 ± 10.2) were scanned in situ at room temperature at 3T using a 3D inversion recovery turbo spin echo sequence with TR = 8000 ms, TE = 8.5 ms, seven inversion times (TI = 100-3000 ms), and voxel size = 1×1×4 mm³. R1 relaxation rates were calculated via 3-parameter exponential fitting, and regions of interest (ROIs) were manually outlined to match tissue locations sampled for chemical iron quantification (Figure 1 shows a 1 cm-thick brain slice with an R1 map). After MRI, brains were extracted, immersion-fixed in formalin for 3-5 weeks, and bilateral specimens were collected from the globus pallidus, putamen, caudate nucleus, and from frontal, temporal, and occipital regions of both white matter and cortex. For statistical analysis, the globus pallidus, putamen, and caudate nucleus were grouped as basal ganglia (n=128); frontal, temporal, and occipital white matter as white matter (n=234); and analyzed cortical regions as cortex (n=71). Samples were freeze-dried, mineralized, and analyzed with ICP-MS (Agilent 7500ce), reporting iron in mg/kg of wet tissue. Statistical analyses included region-wise linear regressions, subject-level models, and linear mixed-effects models to account for inter-subject variability. Model assumptions (e.g., normality, homoscedasticity) were assessed.



Mean iron concentration was highest in the basal ganglia (146 ± 51 mg/kg), followed by white matter (44 ± 12 mg/kg) and cortex (35 ± 12  mg/kg). Linear regression revealed a significant positive association between iron concentration and R1 in the basal ganglia (p < 0.001, R² = 0.15) and cortex (p = 0.011, R² = 0.09), but not in white matter (p = 0.051, R² = 0.02). Subject-level regressions showed consistent positive slopes in the basal ganglia and cortex. Mixed-effects models confirmed a significant relationship in both the basal ganglia and cortex, with inter-subject variability accounting for most of the explained variance (71% and 52%, respectively). To determine whether the association in the basal ganglia was driven by inter-regional iron differences, subregions analyses were conducted. The globus pallidus was the only subregion with a significant association with R1—unexpectedly with a negative slope.



Our results confirm a rather low to non-existing correlation of iron concentration with the R1* relaxation rate. While a significant correlation was observed in pooled basal ganglia (Figure 2), the subregional analysis of the basal ganglia highlights the risk of aggregation bias (Figure 3), where the overall positive correlation may be driven by systematic differences in iron levels between subregions rather than reflecting a true continuous relationship. We hypothesize that other tissue properties such as myelin content (9,13,14), water content (6,13,15–17), or iron binding state (6,9,13) may additionally modulate the relationship beyond the rather low sensitivity for brain iron —a phenomenon found in QSM studies (14,18).



Quantitative post-mortem MRI combined with ICP-MS confirmed a weak relationship between iron concentration and R1, mainly in pooled deep gray matter regions. However, this underscores the complexity of iron-related mechanisms on longitudinal relaxation and challenges the validity of R1 as a proxy for iron in the brain, compared with R2* or QSM.


Anna CAPPONI (Graz, Austria), Nikolaus KREBS, Walter GOESSLER, Eva SCHEURER, Kathrin YEN, Stefan ROPELE, Alessandra BERTOLDO, Christian LANGKAMMER
11:22 - 11:24 #47907 - PG144 Altered brain activation patterns associated to early-stage psychosis identified by working and verbal memory task-based fMRI.
PG144 Altered brain activation patterns associated to early-stage psychosis identified by working and verbal memory task-based fMRI.

Psychosis is characterized by delusions and hallucinations that alter the perception of reality. The first occurrence of such symptoms lasting over more than 7 days is termed first-episode psychosis (FEP) [1]. Psychotic disorders are highly heterogeneous, but depending on the presence of severe mood disturbances they are divided in affective (eg, mania with psychotic features or psychotic depression, both early stages of bipolar disorder) and non-affective (early stage of schizophrenia) psychoses [2]. Functional magnetic resonance imaging (fMRI) data can help understand alterations in brain mechanisms of both affective (A-FEP) and non-affective (NA-FEP) FEP. A recent review of advanced imaging studies in FEP reported hypoactivation in several regions during cognitive tasks, along with reduced DMN connectivity [1]. Further fMRI studies in FEP could help further characterize if functional brain disturbances previously reported in psychosis emerge during the early stages or during the course of the illness. This study aims to examine functional brain differences between 1) healthy controls (HC) and patients with FEP; 2) A-FEP and NA-FEP individuals, using fMRI during a working memory task and a verbal memory task.

Eighty-two participants (aged 18-46) including 35 patients (13 A-FEP, 22 NA-FEP) and 47 HC were scanned in a 3T Siemens scanner. The protocol included T1-weighted image (TR = 2.3s, TE = 3ms, voxel size = 1x0.94x0.94 mm³) and two task-based functional MRI sequences (TR = 1.5s, TE = 37ms, voxel size = 2x2x2 mm³), a letter n-back working memory task and a verbal memory task. During the n-back task, participants had to press a button when the letter shown to them matched the letter shown one (1-back) or two steps (2-back) back in a continuous sequence. The task consisted in eight blocks alternating between 1 and 2-back, each followed by a rest period marked by a cross. The verbal memory task included three periods of listening a list of incomprehensible words (rest), followed by four cycles of listening an understandable word list (encoding) and silent period of recalling words from the list (retention). FMRI preprocessing included slice timing, motion correction, distortion correction (registration to the T1w image), spatial smoothing and frequency filtering. First-level activation maps were generated using nilearn, comparing task blocks. In the n-back task, 2-back and 1-back were compared with each other and with rest; for the verbal task, we assessed differences between retention and encoding, and between each phase and rest. FSL Randomise with threshold-free cluster enhancement was used to compare activation maps between HC and FEP, and between A-FEP and NA-FEP. Age, sex, study level and IQ were used as covariables and statistical significance at each voxel was set at p < 0.005.

In the working memory task, reduced deactivation associated to the 2-back task was observed in the FEP in comparison to HC in medial frontal and right temporal regions (Figure 1). When comparing A-FEP and NA-FEP, greater activation was observed in the bilateral angular and supramarginal gyri in the A-FEP group, extending towards the left middle temporal gyrus (Figure 2). In the verbal memory task, decreased activation during memory retention was found in patients relative to HC in bilateral lateral occipital and right precentral areas (Figure 3). No differences were observed when comparing A-FEP and NA-FEP subjects.

Task-based fMRI allowed to identify differences in the brain activation patterns of individuals with FEP with respect to HC both during working and verbal memory task. Individuals with FEP showed an increased activation during high cognitive working memory tasks in regions that follow a deactivation pattern, such as frontal regions typically associated to the DMN, a result similar with previous studies denoting DMN alterations [3]. Further alterations between FEP and HC groups were found in precentral regions related to verbal memory [4]. Analyses between FEP groups showed A-FEP having an increased activation in 2-back vs. rest in regions associated with a high activation pattern similar to the task-positive/dorsal attention network profile, which is known to be related to working memory. Literature supports task-positive network alterations in schizophrenia [5] and a stronger severity of cognitive impairment in schizophrenia [6]; therefore, a lower brain activation could be in line with this notion.

These findings provide evidence of a specific pattern of brain activation in FEP patients already observable at early stages, that may relate to cognitive deficits. Functional MRI can be powerful to detect brain alterations in psychosis and identify specific patterns in N-FEP and NA-FEP. In this study, alterations were detected both by a working memory and a verbal memory task. Further studies will be performed to relate these brain activation patterns with cognitive deficits and to inform tailored early FEP interventions.
Alejandro HINOJOSA-MOSCOSO (Barcelona, Spain), M Florencia FORTE, Maria SERRA-NAVARRO, Derek CLOUGHER, Silvia AMORETTI, Eduard VIETA, Emma MUÑOZ-MORENO
11:24 - 11:26 #47654 - PG145 Quantitative MRI study of excised brain tissue in drug-resistant epilepsy patient: from in-vivo to ex-vivo.
PG145 Quantitative MRI study of excised brain tissue in drug-resistant epilepsy patient: from in-vivo to ex-vivo.

Quantitative MRI (qMRI) parameters have been used as in-vivo biomarkers to estimate tissue microstructure like myelin and iron[4]. To learn and validate the relation between qMRI and microstructure, ex-vivo high resolution qMRI maps have been compared to their histological counterpart[1,2]. However, the changes of qMR parameters from in-vivo to ex-vivo tissue and their dependence on image resolution (from mm to sub-mm) have not been fully characterised yet. This limits the translation of the the validated relation between qMRI parameters and histology to in-vivo applications. In the past, we explored the change of qMRI parameters from in-vivo to fixed ex-vivo for a freshly excised brain tissue section from drug-resistant temporal lobe epilepsy (dTLE) patients with close-to-clinical MR protocols[3,4]. Here we extend this study by (1) exploring a broader range of advanced qMR markers and (2) comparing with higher image resolution.

The study was acquired at the University Medical Center Hamburg-Eppendorf (ethics committee approval: protocol PV5600). The MR techniques used for all measurements were multi parametric mapping (MPM)[4], myelin water imaging (MWI)[5], magnitude-phase-based T2 mapping (MagPhT2)[6] and q-space trajectory imaging (QTI)[7]. Detailed information in Fig. 1A. In-vivo subject (pre-surgery): A woman (56 y) diagnosed with drug-resistant temporal lobe epilepsy was measured with a 3T Prisma fit Siemens MR scanner and 64Ch head coil prior to undergoing hippocampal resection. Ex-vivo specimen: A 16Ch wrist coil was used to measure the excised temporal pole (at room temperature) at three tissue stages: unfixed, fixed with a post-mortem interval of 45 min, and hydrated. The unfixed tissue was measured in glucose solution. Then, it was fixed with 4% paraformaldehyde (PFA) for 7 days (measured at the beginning and at the end of fixation). Later, the tissue was washed in phosphate buffered saline (PBS) solution for 2 days and measured in PBS + 0.1% NaN3. Finally, the tissue was scanned again using the same and high resolution protocols. Protocol details are in Fig. 1A. Pre-processing and analysis: Several relaxometry and diffusion analyses (Fig. 1B) were performed for all MR measurements (Fig. 2A). Next, we affine-registered and resampled all the masked ex-vivo MR images (from unfixed to hydrated high resolution) to the in-vivo MR image (Fig. 2B). For the high resolution data and QTI, the parameter maps were re-aligned to in-vivo, but analysis was done in original space.

According to Fig. 3, R1, R2, R2*, intra-axonal R2* (R2*-intra) and MWF increased after excision (in-vivo -> unfixed) and during fixation (fixed day 0 -> day 7), decreased after hydration (fixed day 7 -> hydrated), and preserved the cGM-WM contrast. Interestingly, myelin R2* (R2*-mye) behaves different (Fig. 3F): it increases after excision and when fixation started (day 0), but drops at the end of fixation (day 7) and even further during hydration. At increasing resolution (HydratedHighRes), R1, R2*-intra and R2*-mye increased barely, R2* decreased, and R2 and MWF remained stable. In Figure 4, MD (Fig. 4C) dropped by more than half after excision, increased slightly during fixation, and decreased again during hydration. Notably, its cGM–WM contrast increased across all states, by increasing in cGM and decreasing for WM. uFA and MKA (Fig. 4B and F) showed a trend similar to R2*-mye (Fig. 3F) while the trend of the noisy MKI (Fig. 4D) was inconsistent. MKT (Fig. 4E), as a composite of MKI and MKA, followed the trends of its constituent parts. FA decreased in WM and increased in cGM after excision, then declined markedly in both during fixation. Hydration had no further impact. In high-resolution scans, GM–WM contrast was preserved, though absolute values shifted, presumably due to differences in protocol parameters.

Our results confirm previous findings on how relaxometry, MWF, MD and FA changed across tissue stages (e.g., [21,23]); we also found a new common trend across tissue stages between MKa, uFA and R2*-mye. From these observations, we speculate that there is a common mechanism driving MWF and relaxometry on one side, and uFA, MKa and R2*-mye on the other side. Well-known candidates for the observed changes in relaxometry and diffusion parameters are reduced temperature, loss of perfusion, cellular apoptosis, cross-linking of proteins due to fixative, and reduced para-vascular space compared to in-vivo[20-23]. Finally, our high resolution results deviated from the low-resolution counterparts, some parameters more than others. Limiting factors of our study are the sample size (one), inaccuracies in registration between in-vivo and ex-vivo, and the use of in-vivo MR protocols for the ex-vivo specimen, which could result in parameter-estimation bias.

Our comprehensive acquisition of qMR parameters revealed that transferring findings from ex-vivo to in-vivo MRI requires a thorough characterisation of their changes across tissue stages.
Francisco Javier FRITZ (Hamburg, Germany), Noémie Camille Rachel SURA, Nina LÜTHI, Laura BOGS, Laurin MORDHORST, Rüdiger STIRNBERG, José P. MARQUES, Filip SZCZEPANKIEWICZ, Jan Malte OESCHGER, Ora OHANA, Markus NILSSON, Evgeniya KIRILINA, Thomas SAUVIGNY, Siawoosh MOHAMMADI
11:26 - 11:28 #47630 - PG146 Study of the relationship between tumor metabolism modulators, IDO1, IDH and ChK-α, and the expression of the immune checkpoint, PD-L1, in glioblastoma models.
PG146 Study of the relationship between tumor metabolism modulators, IDO1, IDH and ChK-α, and the expression of the immune checkpoint, PD-L1, in glioblastoma models.

Immune checkpoint blockade-based immunotherapies (IMT) have demonstrated efficacy in some tumors such as melanoma (1), but have failed in others like glioblastoma (2), and we don't know the reason. A possible cause is aberrant tumor metabolism that allows tumors to create an immunosuppressive microenvironment (3). Previous studies showed a relationship between the immune checkpoint PD-L1 and key pieces of tumor metabolism (4). This work aims to investigate the existence of a relationship between aberrant tumor metabolism and acquired tumor immuneresistance.

We modulated the immune-checkpoint PD-L1 and three key metabolic enzymes, ChK-α, IDO1 and IDH1, to assess their effect on the lipid profile of various GBM models. We used the murine glioma cell line GL261 wild type (GL261wt) and IDH mutated (GL261mIDH) along with human glioblastoma cell lines (SF10602ML). Cells were seeded and treated for 48h with metabolic inhibitors, AGI-5198 and 1-MT, against mutated IDH and IDO1 respectively, or transfected with siRNAs against PD-L1 and ChK-α. Metabolic profiles were obtained through dual-phase metabolite extraction and subsequent 1H high-resolution NMR analysis (5). Spectra were acquired on a Bruker Avance Neo 11.7T NMR spectrometer. Integrals of the metabolites were determined and normalized to the TSP reference and the number of cells, from at least three experimental samples.

Decreasing PD-L1 expression depicted increased levels of lipids involved in tumor progression, such as cholesterol or phosphatidylcholine in SF10602ML and GL261mIDH cells. Downregulating Chk- α increased the levels of total lipids in GL261-WT cells. Furthermore, the pharmacological inhibition of IDO1 with 1MT showed a significant increase of cholesterol, phosphatidylcholine and total lipids in GL261-WT cell line. On the other hand, the inactivation of mIDH1 with AGI-5198 reduced the total level of lipids in murine cell lines carrying the IDH1 mutation.

Our results showed the existence of an interrelationship between PD-L1 expression and lipid metabolism in glioblastoma cells, highlighting the influence of the genetic profile on this interrelationship. This study demonstrates that PD-L1 has pro-oncogenic functions that go beyond its traditional role as an immunomodulator, influencing tumor metabolism. Metabolism also impact immunoresistence, as it has been demonstrated that lipids can reprogram T cells infiltrating the tumor mass towards immunosuppressive and anti-inflammatory phenotypes. Therefore, the increase in lipid levels upon PD-L1 downregulation could be utilized by tumor cells to regain resistance against the natural immune response.

These results are highly relevant as they unveil a relationship between tumor metabolism and tumor acquired immuneresistance. The study of this relationship and the mechanisms that control it will allow us to understand why certain tumors do not respond to IMT, as well as rationally design new combinations of therapies seeking a synergistic effect. We hope to expand our research by working with new human cell lines carrying the IDH mutation, as well as by testing our results in glioblastoma in vivo models. Taking all this into account, we could demonstrate for the first time the existence of a relationship between tumor metabolism and PD-L1 expression in glioblastoma models.
Paula CARRETERO NAVARRO (Madrid, Spain), María José GUILLÉN GÓMEZ, Pilar LÓPEZ LARRUBIA, Jesús PACHECO TORRES
11:28 - 11:30 #47612 - PG147 Diffusion MRI derived white matter plasticity following mindfulness and inhibitory control training in adolescents.
PG147 Diffusion MRI derived white matter plasticity following mindfulness and inhibitory control training in adolescents.

Inhibitory control (IC), a core component of executive functions (EFs), plays a crucial role in cognitive and socio-emotional development [1]. Interventions such as cognitive training (CT) and mindfulness meditation (MM) have been shown to enhance IC [2-7]. IC relies on a widely distributed cortico-subcortical network, particularly involving prefrontal regions, which undergoes protracted maturation throughout adolescence [8-9]. Despite growing interest in IC training, little is known about how such interventions affect brain connectivity during this critical developmental window. Diffusion MRI (dMRI), which enables in vivo assessment of white matter (WM) microstructure, is well suited for studying structural connectivity. In this study, we investigated the effects of five weeks of computerized MM, CT, or active control (AC) training on WM microstructure in adolescents.

91 healthy adolescents (16–17 y.o., 55 females) were recruited. Participants were randomly assigned to MM, CT, or AC groups. EFs were assessed with cognitive and emotional Stroop task, Simon task, Delay Gratification Tasks, Trail Making Test, the dot Task, the Stop Signal Task, and the N-back task. Diffusion MRI data (single shot spin-echo echo-planar imaging, 30 directions, TR = 11s, TE = 0.0867 s, flip angle = 90, b-value = 1500 s/mm2, slice thickness = 2 mm, voxel size = 2.0 × 2.0 × 2.0 mm) were collected pre- and post-intervention. dMRI data were preprocessed with FSL using standard parameters [10]. Individual maps of fractional anisotropy (FA), mean diffusivity (MD), radial diffusivity (RD), and generalized fractional anisotropy (GFA) were then quality checked and analyzed using a longitudinal adaptation of the standard Tract-Based Spatial Statistics (TBSS) approach [11]. Maps comparisons along with correlations between cognitive changes and dMRI metrics changes were assessed using voxelwise permutation testing (n = 5000, TFCE-corrected, p < 0.05) and anatomical labeling based on the JHU WM atlas [12-14].

No significant changes in WM microstructure were observed within any of the training groups when analyzed independently. However, we found significant differences when comparing WM changes across groups, as well an association between WM alterations and EF changes across the different training conditions. Compared to CT, MM exhibited greater increases in FA and decreases in RD, particularly within the forceps minor, anterior thalamic radiation, and inferior fronto-occipital fasciculus. In addition, we found significant differences between conditions in main WM tracts associated with cognitive control, such as the ILF, SLF, IFOF, cingulum and anterior thalamic radiation in the following tasks: N-back, cognitive Stroop, SST and Simon.

These findings provide evidence for short-term WM microstructure plasticity in adolescents and suggest that different interventions modulate distinct neuroanatomical pathways. The WM pathways affected by the interventions are known to be critical for executive functions and interhemispheric integration. Of note, MM appeared to induce more robust enhancements in WM microstructure. The emerging pattern of training-specific plasticity highlights the importance of tailoring interventions based on targeted specific cognitive domain.

Our results provide diffusion MRI evidence that both MM and CT can induce short-term WM plasticity during adolescence, with distinct effects across major white matter pathways. These findings enhance our understanding of how different interventions can shape brain development and inform the design of targeted, evidence-based strategies to promote mental health and cognitive functioning in youth. The use of dMRI biomarkers enables the detection of subtle, training-induced changes in WM microstructure. Ongoing analyses in children (to be presented at the meeting) will further investigate potential age-related differences in WM plasticity and test the hypothesis that training may accelerate WM maturation.
Belen AZOFRA-MACARRON (Paris), Lorna LE STANC, François RAMON, Gabriela REZENDE, Iris MENU, Cloélia TISSIER, Emilie SALVIA, Julie VIDAL, Marine MOYON, Lisa DELALANDE, François ORLIAC, Nicolas POIREL, Catherine OPPENHEIM, Olivier HOUDÉ, Grégoire BORST, Arnaud CACHIA
11:30 - 11:32 #46640 - PG148 Sleepy QSM: Study to assess the effect of sleep deprivation on brain homeostasis with 7T QSM and qT1.
PG148 Sleepy QSM: Study to assess the effect of sleep deprivation on brain homeostasis with 7T QSM and qT1.

Acute sleep deprivation (>24 h) consistently slows reaction times and increases lapses on the Psychomotor Vigilance Task (PVT), indicating impaired sustained attention.[1] During normal sleep, glymphatic exchange clears neuro-metabolic waste, whereas MRI T1-mapping shows this clearance is attenuated when wakefulness is prolonged.[2][3] Quantitative susceptibility mapping (QSM) has revealed sleep-related microstructural changes in brainstem and subcortical nuclei in disorders such as REM sleep behaviour disorder and obstructive sleep apnoea, underscoring its sensitivity to iron and perfusion shifts that accompany disrupted sleep physiology.[4][5] This study investigates the effects of 24h of sleep deprivation on regional QSM and T1 alterations to concurrent cognitive decline using 7T MRI. We therefore combined 7T QSM/T1 mapping with repeated PVT assessments in healthy adults to test reversible, region-specific changes that track the magnitude of cognitive slowing.

We enrolled 30 healthy subjects (age 20-38) who underwent an 7T MRI at baseline (day 0), after sleep deprivation of 24h (day 1) and post recovery (day 4). Participants were supervised by medical staff to confirm that the participants were awake for all 24h. The impact of sleep on cognitive performance was measured using reaction time assessments from NASA PVT (300s duration each) at 0h, 12h, 24h and 96h, extracting mean latency, the slowest 10 % and fastest 10 % of responses as performance endpoints. 7T QSM was computed from complex images acquired with an ASPIRE-based GRE sequence (0.7x0.7x0.7mm^3, TE=5, 10, 15, 20ms, TR=25ms) [6] and reconstructed with QSMbox [7]. Per time point, an additionally acquired MP2RAGE (0.7x0.7x0.7mm^3) was used to generate a subject-based whole-brain segmentation via FastSurferCNN [8]. The created segmentation was transformed to the QSM data using FSL FLIRT [9]. The ROIs were used to calculate the average mean +/- stdev QSM values. In addition, the average mean +/- stdev was also determined from the T1 maps of the MP2RAGE sequence. Spearman’s rank correlation coefficient (r) was computed to assess monotonic associations between changes in reaction times (ΔRT) and ΔQSM or ΔT1 for two time intervals (day 0 vs. 1 and day 1 vs. 4). All pre-processing steps and the analysis were performed with Python.

Sleep deprivation led to a transient increase in mean reaction times, including both the slowest and fastest 10% responses at 24 h, with full recovery by 96 h (all p > 0.05; Fig. 1). Reaction time variability decreased progressively, consistent with a training effect. Quantitative susceptibility mapping (QSM) revealed a significant negative correlation between ΔQSM (Fig. 2) in the ventral diencephalon and slowing in the slowest 10% of responses (r = –0.40, p = 0.029), indicating regional susceptibility changes associated with cognitive impairment. Trends toward significance were also observed in the thalamus proper (r = –0.30, p = 0.107) and cerebral white matter (r = –0.31, p = 0.095). No significant associations were found with mean or fastest 10% reaction time changes. T1 relaxometry showed the strongest effects in the lateral ventricles (Fig. 3), where T1 prolongation correlated significantly with both mean reaction time (r = –0.48, p = 0.007) and the slowest 10% (r = –0.37, p = 0.041). A near-significant trend was seen in the ventral diencephalon (r = –0.36, p = 0.050). No significant correlations were found for the fastest 10% reaction time decile.

QSM-based susceptibility changes in the ventral diencephalon were significantly associated with cognitive slowing during sleep deprivation, implicating an involvement of deep gray matter in transient, sleep deprivation-induced, transient functional impairment. These alterations may reflect regional changes in iron content, perfusion or glymphatic flow. Supporting trends in thalamic and white matter regions suggest a more widespread but reversible vulnerability of subcortical structures to sleep-related stress, particularly affecting attentional maintenance as reflected by the slowest response decile. T1 prolongation in the lateral ventricles showed robust associations with slower reaction times, highlighting ventricular fluid shifts or altered CSF-interstitial exchange as potential contributors to cognitive decline. The near-significant T1 findings in the ventral diencephalon parallel the QSM results, underscoring this region’s relevance in sleep-related brain physiology. The lack of associations with the fastest reaction times suggests these MRI metrics are more sensitive to processes underlying sustained attention and fatigue.

Sleep deprivation induces region-specific, reversible MRI changes in susceptibility and T1 relaxation that correlate with cognitive slowing, particularly in the ventral diencephalon and periventricular regions. These findings support a role of altered glymphatic function and subcortical vulnerability in mediating the cognitive effects of sleep loss.
Eric EINSPÄNNER, Hendrik MATTERN (Magdeburg, Germany), Erelle FUCHS, Sebastian MÜLLER, Eya KHADHRAOUI, Daniel BEHME
11:32 - 11:34 #47857 - PG149 fMRI analysis of cerebrospinal fluid flow during slow paced breathing compared to free breathing.
PG149 fMRI analysis of cerebrospinal fluid flow during slow paced breathing compared to free breathing.

Cerebral spinal fluid (CSF) pulsations are associated with brain waste clearance and may be driven by breathing, among other factors such as heart rate, vasomotion, autonomic function or neuronal activity [1,2]. In an impactful study, Fultz et al. showed that fMRI can be used to assess the pulsatile inflow of CSF into the fourth ventricle and its coupling with the low-frequency global grey matter BOLD signal (gBOLD), presumably reflecting a mechanism whereby reductions in total cerebral blood volume (CBV) lead to the inflow of CSF into the brain to preserve the constant volume of fluids in the head [3]. Using this approach, recent studies showed that, besides sleep as in the original paper, breathing can modulate CSF flow and the CSF-gBOLD coupling, including brief deep breaths as well as paced breathing and breath-holding [4,5]. Such breathing modulations seem to amplify CSF flow, potentially as a result of the associated intrathoracic pressure and blood CO2 changes [4,5]. Here, we aim to further investigate how autonomic modulation through a slow paced breathing (SPB) task affects CSF flow and the CSF-gBOLD coupling, compared to free breathing rest (FBR).

fMRI data were collected from 15 healthy women (30.9 ± 6.8 years) during the two phases of their menstrual cycles (before menses and post-ovulation), during: SPB (2 min at 0.1 Hz, preceded and followed by 1 min of FBR, with visual instructions), and FBR (7min eyes open) in the awake state. fMRI data was collected in a 3T Siemens Vida scanner with a 64-channel RF coil using 2D-EPI (TR/TE=1260/30ms, in-plane GRAPPA-2, SMS-3, 60 slices, 2.2mm iso resolution). Moreover, respiratory signals (integrated Siemens Biomatrix sensors) were continuously recorded during the scans. One phase of one subject was excluded due to a technical issue. Since no differences were found between the two phases of the menstrual cycle, the two sessions were pooled for subsequent analysis. fMRI data processing included (code [6]) motion and distortion correction, brain extraction, motion outliers detection, temporal high pass filter (0.01 Hz), spatial smoothing (3.3 mm - FBR, 3.5 mm - SPB), and registration. A Butterworth bandpass filter 0.01-0.2 Hz using a zero delay fourth order was also applied. gBOLD was obtained by averaging the BOLD signal across the cortical grey matter (automatic segmentation using FSL’s FAST). The CSF signals were extracted from the fourth ventricle (semi-manually defined). Lagged cross-correlations were computed using Pearson’s correlation coefficient to assess signal coupling between gBOLD (and its negative derivative) and CSF signals. Similar analyses were conducted between respiratory and gBOLD signals, as well as between respiratory and CSF signals.

Large modulations in the CSF and gBOLD signals occur alongside corresponding large changes in respiration during SPB, while smaller amplitude modulations are observed during FBR, as seen in Fig. 1. Fig. 2 shows the cross-correlation curves for both tasks. Consistently with the literature, during FBR, the first peak in the gBOLD–CSF cross-correlation is positive, followed by a negative peak. In contrast, this pattern is reversed during SPB, with an initial positive peak followed by a negative one. Fig.3 depicts the distributions across subjects of the cross-correlation values of the first and second peaks, ordered by lag time, as well as their lags, during FBR and SPB. Higher gBOLD-CSF correlation values were obtained during SPB relative to FBR. Despite differences in lag, clear anticorrelation of the gBOLD and CSF signals was observed during both conditions, consistent with previous studies. As shown in Fig.4, compared to FBR, SPB exhibits a stronger coupling between respiratory signals and CSF and gBOLD signals.

The gBOLD–CSF coupling described in the previous human studies is also present in our dataset during rest [1,2]. However, the breathing manipulation increased the coupling strength while shifting its lag. SPB shows a clearer, more symmetrical, and stronger correlation centred around 0 s between the gBOLD derivative and CSF signals. This means that rapid changes in gBOLD tend to occur at the same time as changes in CSF, suggesting a tighter temporal link between gBOLD-CSF dynamics during SPB. SPB enhances both positive and negative cross-correlation peaks compared to FBR, suggesting stronger gBOLD–CSF coupling. Overall, our results suggest that autonomic activity associated with this slow paced breathing task at 0.1 Hz, which engages the parasympathetic system, may contribute to CSF pulsations, further supporting the findings of the only previous study of paced breathing [4]. Future studies should clarify the timing differences observed in the gBOLD-CSF coupling during such a breathing task when compared to rest with free breathing.

We observed that SPB significantly enhanced gBOLD–CSF coupling relative to FBR, suggesting a link between respiratory-driven autonomic modulation and CSF dynamics.
Maria DIAS (Lisbon, Portugal), Inês ESTEVES, Frederico SANTIAGO, Sara MONTEIRO, Ana FOUTO, Amparo RUIZ-TAGLE, Gina CAETANO, Patrícia FIGUEIREDO
11:34 - 11:36 #47905 - PG150 In vivo test-retest study of liver stiffness in male and female mice using two motion encoding MR Elastography methods.
PG150 In vivo test-retest study of liver stiffness in male and female mice using two motion encoding MR Elastography methods.

Magnetic Resonance Elastography (MRE) is a non-invasive technique used to assess tissue stiffness, particularly in the context of liver fibrosis [1]. We have developed an MRE approach based on optimal control (OC) theory, enabling motion encoding at short echo times (TE) and improving signal-to-noise ratio (SNR). To support future clinical translation, this method must first be validated in animal such as murine models of liver diseases. In this work, we perform in vivo liver MRE acquisitions in mice we compare the performance of RARE-based MRE sequences using the classical motion encoding gradient method (MEG-RARE) and our optimized OC-based approach (OC-RARE) [2–4] through a test-retest protocol. We also examine stiffness measurements (shear storage modulus G′) and SNR variability between male and female mice.

Six healthy mice (3 females, 3 males) were examined in accordance with ethical standards. The average weight of the female mice was 25 g (born in November 2024), while the male mice weighed an average of 30 g (born in October 2024). Anesthesia was maintained using 2% isoflurane, with continuous monitoring of respiratory rate and body temperature. MRE acquisition were performed on two different days (D1 and D15) at 300 Hz using two sequences: the classical motion encoding gradient method (MEG-RARE) and the optimal control-based method (OC-RARE). In the latter, RF pulses generated via an optimal control algorithm simultaneously ensured slice selection and motion encoding. Acquisition parameters are detailed in Figure 1. Mechanical wave motion was encoded along the slice direction using two opposite wave polarities, enabling phase subtraction to reduce phase noise. Phase images were then processed through phase unwrapping, temporal Fourier transform, and spatial filtering, before elastogram reconstruction using the AIDE algorithm [5]. G′ values were measured in liver regions where wave displacement along the slice direction exceeded 5 µm, corresponding to a minimum phase shift of approximately 0.93 radians in the MEG-RARE sequence. Variations in G′ were analyzed across sequences, sexes and acquisition timepoints. To assess measurement precision, a global coefficient of variation (CV) was calculated for each method using all repeated G′ measurements across animals, defined as: CV (%) = (SDG’ / mean G’) × 100, where SDG’ is the standard deviation of repeated measurements. Test-retest reproducibility was evaluated using the relative variation ΔG′ between Day 1 and Day 15, defined as: ΔG′ (%) = [(G′_D1 − G′_D15) / ((G′_D1 + G′_D15)/2)] × 100.

Figure 2 and 3 illustrate representative magnitude images, wave images, and elastograms obtained from one female (Fig. 2) and one male mouse (Fig. 3) at Day 1. Figure 1 summarizes the mean G′ values, standard deviations, global CV, ΔG′ and signal-to-noise ratios (SNR) for each mouse and acquisition method. Both MEG-RARE and OC-RARE showed good test–retest reproducibility, with slightly lower ΔG′ and CV values observed in the OC-RARE method. OC-RARE also provided a higher signal-to-noise ratio (SNR ≈70) compared to MEG-RARE (SNR ≈40). It can be observed that G′ values were moderately higher in males than in females, as seen in Figure 4 but that for male mice, results between D1 (five months old) and D15 are equivalent across both methods whereas for female mice, G’ values increase between D1 (four months old) and D15.

The results show that the OC-RARE method, based on motion encoding via optimal control, provides liver stiffness measurements comparable to the classical MEG-RARE method while significantly improving the signal-to-noise ratio. The results demonstrate stable G′ measurements across two timepoints, supported by low global CV and ΔG′ values. The SNR improvement is mainly related to shorter echo times (TE) enabled by motion encoding without motion encoding gradients. Finally, the optimal control approach appears promising for improving MR elastography acquisition quality. Our results show that for female mice which are four months old, liver stiffness changes whereas usually, it is taken for granted that as from two months age, female mice are adults implying stable liver stiffnesses.

The OC-RARE method enables reliable magnetic resonance elastography acquisition, providing liver stiffness measurements comparable to those obtained with the conventional MEG-RARE approach. It demonstrates good measurement precision and satisfactory test-retest reproducibility, while offering higher signal-to-noise ratios. By improving overall acquisition quality without compromising measurement accuracy, the optimal control-based encoding strategy shows particular promise for studying tissues with short T2 relaxation times, such as iron-overloaded liver. Further studies in larger cohorts and pathological models are needed to fully validate its potential in preclinical settings. The study showed the importance of using both sexes and taking their ages into account.
Tiffany BAKIR AGERON (Lyon), Kevin TSE VE KOON, Pilar SANGO-SOLANAS, Olivier BEUF
Salle 120

"Friday 10 October"

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E22
11:00 - 12:30

MS3 - Sensing myelin with MRI
Different perspectives and the actual needs

Keynote Speakers: Emily Louise BAADSVIK (Postdoc) (Keynote Speaker, Zurich, Switzerland), Marco PALOMBO (Keynote Speaker, United Kingdom), Gian Franco PIREDDA (Keynote Speaker, Lausanne, Switzerland), Petra POUWELS (Keynote Speaker, Amsterdam, The Netherlands)
Chairpersons: José MARQUES (PhD), Jespersen SUNE (Chairperson, Denmark), Markus WEIGER (PhD) (Chairperson, Zurich, Switzerland)
Salle 76

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G22
11:00 - 12:30

Poster 3
FT1 - RF hardware | FT1 - Hardware beyond RF | FT1 - Cross-modality technologies | FT3 - Phantoms & Simulations

11:00 - 12:30 #47888 - PG319 Design and demonstration of a tunable metasurface for improving abdominal imaging at 3 T.
PG319 Design and demonstration of a tunable metasurface for improving abdominal imaging at 3 T.

At 3 T MRI, the radiofrequency (RF) wavelength becomes comparable to body dimensions, causing dielectric artifacts and dark regions in images. Recent work suggests using metamaterials [1,2] and metasurfaces (MSs) [3] to shim the transmit field passively. Placed on the body, these structures localize the RF field within the ROI, increasing |B₁⁺| amplitude and mitigating dielectric artifacts. Here, we propose an MS comprising six concentric split-ring resonators (SRRs). This configuration offers two key advantages: easier tuning using four capacitors per SRR and adjustable RF field distribution through frequency detuning (Δf) between SRRs. By varying Δf between adjacent rings, the system achieves tailored B₁⁺ field distributions optimized for specific anatomical ROIs.

Numerical simulations were performed in CST Studio Suite 2022 using a frequency domain solver. The MS consisted of six square concentric SRRs with side lengths of 46, 90, 134, 178, 222, and 266 mm, respectively. Each SRR was made of 2 mm-wide copper strips and included four gaps loaded with variable capacitors (Fig.1a). The resonant frequency of the entire device was tuned to 123 MHz. A detuning approach was applied by selecting the capacitance values such that each inner SRR had a first resonant mode at a higher frequency than its neighboring outer ring. Several configurations with different frequency gaps (Δf) between adjacent SRRs were studied (Fig.1b). To estimate the |B₁⁺| and the SAR distributions, we performed numerical simulations using a voxelized human model ‘Duke’ (Sim4Life) with realistic tissue properties. The transmit RF coil was a 16-leg shielded high-pass whole-body birdcage coil with a 700 mm bore diameter (Fig.1c). The |B₁⁺| and SAR distributions were normalized to 1W of the accepted power. The coefficient of variation (Cv) was used to assess |B₁⁺| inhomogeneity. It was calculated as the standard deviation divided by the mean |B₁⁺| in the ROI, expressed as a percentage. The local maximum SAR (SARav.10g) was calculated as averaged over 10g of tissue. SAR efficiency was determined as the |B₁⁺|/√SARav.10g. Experimental validation was carried out on a 3 T Siemens Magnetom Trio system using a birdcage coil for transmission and a matrix surface coil for reception. The MS configuration with Δf = 7 MHz was selected for experimental studies based on its optimal SAR efficiency in simulations. The HASTE pulse sequence (TE/TR = 61/2000 ms; FA = 180°; FOV = 400×400 mm²; acquisition matrix = 384×384; slice thickness = 5 mm) was used to acquire abdominal MR images of a healthy volunteer with and without the MS. The SNR maps were calculated by dividing the mean signal intensity in the liver region by the standard deviation of the noise estimated in signal-free background areas.

Numerical simulations showed that the MS increased the |B₁⁺| amplitude in the liver from 0.15 to 0.19–0.20 µT (~35% gain). Cv of the B₁⁺ field in the liver was 14.7% in the reference case and changed to 21%, 17.5%, and 19% for Δf = 0, 7, and 20 MHz, respectively. SAR maps (Fig. 3) showed localized hotspots near the liver in all MS configurations. The SARav.10g maximum increased from 0.14 W/kg (reference case) to 0.23, 0.20, and 0.21 W/kg for Δf=0, 7, and 20 MHz, respectively. However, the reference case showed SAR efficiency of 0.40 μT/√W/kg, while the MS configurations demonstrated SAR efficiencies of 0.40, 0.45, and 0.43 μT/√W/kg for Δf=0, 7, and 20 MHz, respectively. Experimental studies of liver MRI demonstrated that using the MS increased the average SNR in the ROI by 46% compared to the case without the device (Fig. 4).

Numerical simulations revealed that all considered MS configurations effectively reshaped the B₁⁺ field of the birdcage coil, producing an increase in B₁⁺ field amplitude within the ROI. This redistribution successfully compensated for the B₁⁺ field minimum present without the MS. Although each configuration increased the local SARav.10g, the concurrent enhancement of the B₁⁺ field amplitude led to improved SAR efficiency. The configuration with Δf = 7 MHz demonstrated the highest SAR efficiency of 0.45 μT/√W/kg, making it the optimal choice for experimental implementation. Experimental MRI studies with a healthy volunteer demonstrated that the proposed MS enhanced signal intensity in the ROI. The current study focused on optimizing the MS's configuration specifically for liver imaging. However, the proposed tunable MS offers broader applicability due to its flexible adaptability to different ROIs. By modifying capacitor values, the spatial distribution of the RF magnetic field can be precisely controlled, allowing customization for different anatomical regions. The tunability and the structure's relative simplicity make the design versatile and practical for clinical implementation. This study was supported by the state assignment No. FSER-2025-0018 within the framework of the national project “Science and Universities,” Russian Federation.
Leila SHARIPOVA (Saint Petersburg, Russia), Alena SHCHELOKOVA, Viktor PUCHNIN
11:00 - 12:30 #47610 - PG320 Multi-channel receiver array with wireless connection to the patient table.
PG320 Multi-channel receiver array with wireless connection to the patient table.

Although MRI is one of the most valuable and versatile imaging modalities, it also has considerably higher operational costs in comparison to for example CT or ultrasound. The relatively long duration of MRI investigation and the need for highly trained staff are the dominant contributors to the operational costs of a MRI system. Reducing setup time and simplifying the setup procedure may help to reduce MRI costs. One of the ways to simplify the patient setup is by removing the need to connect RF coils. Approaches that use integrated circuits to digitize the MRI signal on the coil and use conventional wireless signal transfer have been proposed, but come with i.e. lack of required bandwidth, complex circuitry and full redesign of the MRI receiver chain. A simpler approach is to use the RF body coil that through mutual inductance with a local receiver can obtain the signals from the local resonant coil via the receiver connected to the RF body coil [1,2]. However, this hinders the use of wireless local receiver arrays. Inductive matching has been proposed and implemented for more than 30 years [3,4] in fixed mechanics between the receiver coil and the matching coil. Last year we demonstrated that such mechanics can be made variable while maintaining good matching conditions between the receiver coil and the inductively coupled matching loop [5]. In this work, we investigated if an array of stretched coils that have an inductive coupling with loops made inside the bed can be used as a simple approach for wireless RF coil array operation. More specifically, the feasibility of wireless reception using a 4-channel wireless coil with 4 independent receiver loops was investigated.

A 4-channel wireless coil (6x47cm each channel), (Fig.1.A) was tuned and matched at 64MHz for a 1.5T system (Ingenia, Philips, Best, The Netherlands) when it was loaded with a body phantom (σ=0.55S/m, ε=74 at 100MHz). Decoupling via overlapping was implemented. A passive detuning (BAV99W, Eindhoven, The Netherlands) was applied (Fig.1.B) to decouple each channel from the transmit coil during RF-transmit. Two pairs of 5 cm diameter receiver loop coils were designed (Fig.1.C). Each one was tuned and matched at 64MHz when it was placed 2 cm away from the loaded wireless coil (mimicking the patient table). A detuning circuit was applied (Fig 1.D). Overlapping was implemented to reduce coupling between loop coils. The S-parameters of the receiver loop coils and the 4-channel wireless coil, including efficiency and decoupling, were measured as in Setup1 (Fig.2.A) and Setup2 (Fig.2.B). Phantom Imaging The wireless coil was placed around the phantom. Receiver loop coils were placed 2 cm above the wireless coil and only loop coils were connected to the interface box (Fig.2.C). 2D-Dynamic-GRE sequence was acquired. SNR maps per channel and noise correlation matrix were calculated.

All VNA measurements are given in Fig.3. S21 of Setup1 when the receiver loop coil was placed 2 cm above the wireless coil was -27 dB for all channels (Fig.3.A). The decoupling between channels of the wireless coil of Setup2 was at least -13 dB (Fig.3.B). S11 of each receiver loop coil was less than -14 dB, the decoupling between receiver loop coils was at least -14 dB (Fig.3.C). SNR maps obtained from each channel of the wireless coil, particularly in the coronal plane, show signal intensity peaks at the edges corresponding to the sensitivity profiles of both receiver loop coils and wireless coils (Fig.4.A). The noise correlation matrix shows low noise correlation between the channels (Fig.4.B), resulting in largely independent behavior of the receiver loop coils, which is also in agreement with bench measurements.

This work presents an implementation of wireless MR signal reception via inductive coupling for a 4-channel wireless coil. The bench results of Setup1 and Setup2 show the applicability of the wireless array coil design when all channels are independent. SNR maps and noise correlation matrix show the possibility of independent reception of each channel of a 4-channel wireless coil in phantom studies. It provides a perspective for further steps in the design of a wireless coil array and its accompanying receiver loop coil array that would accelerate and simplify studies of complex regions of the human body.

In conclusion, this study has shown that all 4 wireless channels can operate independently, allowing true multi-channel reception with high sensitivity to be achieved over a wide area. The results presented may provide an impetus for the development of wearable coil array technology.
Nikolai LISACHENKO (Utrecht, The Netherlands), Alexander RAAIJMAKERS, Dennis KLOMP, Busra KAHRAMAN-AGIR
11:00 - 12:30 #47082 - PG321 An 8-channel transceiver array made of high-impedance dipoles for 11.7T brain MRI.
PG321 An 8-channel transceiver array made of high-impedance dipoles for 11.7T brain MRI.

The first in-vivo human brain images at 11.7 T were recently shared to the community [1]. Such a high magnetic field comes with several challenges, in particular regarding B0-related artifacts in fast imaging sequences like EPI. In this context, a 27-cm internal diameter multi-coil-array (SCOTCH) was developed [2]. To avoid cross-interactions, a shield must be placed between this device and the RF coil. In this abstract, we propose an 8-channel transceiver array designed to fit inside SCOTCH and made of high-impedance dipoles (HIDs) paired with transmission line baluns, both avoiding the cumbersome use of lumped components.

Based on the same principle as high-impedance loops [3,4], we introduce the HID as a transmission line structure (here as a buried microstrip) with two gaps on its outer conductor making it resonant at the Larmor frequency (499.4 MHz). One can fine tune the HID either by changing the gaps’ positions or their widths. In this simulation, a 6.15 dielectric constant material (Rogers RO4360G) was used for the HID microstrip, making it 26.2 cm long. At 499.4 MHz, the HID is tuned so that the imaginary part of its impedance is equal to 0, and its real part is about 800 Ohms, providing the high-impedance property (Fig. 1A). A transmission line balun (“Marchand balun” [5]) transforms the 800 Ohms to 50 Ohms both required for maximum power transfer at Tx, and for optimal noise matching at Rx (Fig. 1B). A transmit-receive (T/R) switch (Fig. 1C) is integrated into the stripline structure, using three diodes. In the transmit mode, the diodes are biased and protect the preamplifier input (34 dB isolation). In the receive mode, a close to λ/2 long transmission line transforms the low-input impedance of the preamplifier (1.5 Ohms) to a high impedance at the balun’s input, then again transformed into a low-input impedance at the HID port, ensuring preamplifier decoupling between the elements. The stripline structure embedding the balun and the T/R switch is duplicated 16 times with a 20° azimuthal shift. Eight HIDs are connected to every other balun structure; the leftover structures merely close the RF shield and ground plane for the coil. At the front, a copper foil is added to electrically close the shield while saving some space to include a mirror for visual stimulation. Using HFSS (Ansys, PA, USA), the coil was simulated with two homemade multilayers head and shoulders models (Fig. 2). The elements were geometrically fine-tuned on the female model, and no adjustment was done after changing the model to the male one. For completeness, two different HFSS simulations were performed: one at the Tx port, and one at the Rx port (Fig. 1B), both taking into account the parasitic diode effects: a 0.4 pF capacitance in the receive mode, and a 0.4 Ohm resistance in the transmit mode. In each case, the ports were driven with 1W input power. The H-field maps were exported with a 5-mm voxel resolution and transformed to B1+ and B1- profiles. In the receive mode, the S matrix was exported to compute the SNR [6]. Virtual Observation Points (VOPs) were computed to run SAR-constrained kT-points [7] pulse design for different flip angles (maximum average power per channel = 6 W, maximum 10g-SAR limit = 20 W/kg).

In the transmit mode, all elements are matched to lower than -10 dB, ensuring no excessive reflection (Fig. 3A); in the receive mode a low noise correlation is measured in each case and can be attributed to the distance between dipoles (Fig. 3B). The sum-of-magnitudes and SNR maps both exhibit a fairly good homogeneity, except at the top of the brain, which lacks some signal. This signal dropout in this region is more important for the male model and translates into some B1+ shimming difficulties using pulse design (Fig. 4).

A perpendicular-to-B0 shield electrically connected to the baluns’ ground plane at the back of the coil should help to retrieve some signal in the upper brain regions. Even though not yet available at our 11.7T system, a 16-channel transceiver array would certainly allow to further mitigate B1+ inhomogeneities. In that case, a z-segmented array could also be beneficial to give more freedom to the pulse design optimization.

A complete simulation model of an innovative transceiver array at 11.7T was presented. The newly introduced high-impedance dipole paired with a transmission line balun allowed to suppress bulky lumped components. This transceiver array will be later on paired with a tight-fitting cap receive array to maximize SNR at the periphery of the brain [4].
Paul-François GAPAIS (Paris), Michel LUONG, Alexis AMADON
11:00 - 12:30 #47930 - PG322 Towards $50 NMR: commercial sdr and preamplifiers for cost-effective mr signal reception with active rx/tx switching.
PG322 Towards $50 NMR: commercial sdr and preamplifiers for cost-effective mr signal reception with active rx/tx switching.

Magnetic resonance spectroscopy (MRS) and tomography (MRT) are valuable techniques for analyzing chemical and biological samples but are often only available to specialized laboratories due to their high cost and complexity [1,2]. To overcome these barriers, it is needed need to develop more cost-effective and accessible NMR technologies [3]. One approach is the use of Software-Defined Radio (SDR), since it offers a promising solution to increase the flexibility and efficiency of NMR analyses [4]. It was also shown that combining pulsed and continuous wave NMR with active RX/TX-switching can improve the signal-to-noise ratio [5]. To develop a more cost-effective solution and to reduce complexity we present a MR signal reception path based on commercial (SDR) sticks, commercial preamplifier, and a custom-built active transceiver (RX/TX) switch tested with a low-field MR system.

For the measurements, an MR signal reception path consisting of a commercial SDR USB stick (NESDR SMArt v5 SDR, Nooelec Inc., Wheateld NY, USA), commercial broadband preamplifier (827becxfh, Walfront, China) and a custom-built active RX/TX switch was developed. The coil, magnet, and transmit pulse generator from a low-field benchtop MR system (MagSpec 0.57 T & Drive L, PureDevices GmbH, Rimpar, Germany) were taken for the experiments. The TX pulse is transmitted through the RX/TX switch into the coil, while the RX signal is routed through the RX/TX switch, passed through the preamplifier, and then directed into the SDR stick. The SDR stick is controlled using GNU-Radio [6], while the TX signal generation and RX/TX switching are managed via benchtop MR in MATLAB software (MathWorks Inc., Natick, MA, USA). The measurement setup is shown in Figure 1. The RX/TX switching is achieved using two PIN diodes. In TX mode, a direct current is applied to PIN diodes D1 and D2, forming a parallel LC circuit with the low-pass pi-circuit components (C1, L, C2). D2 short-circuits C2, preventing strong TX signals from reaching the preamplifier. In RX mode, both diodes are reverse biased, suppressing noise from the power amplifier. Figure 2 shows a schematic of the RX/TX switch. The TX/RX-switch was analyzed with a vector network analyzer (ZNL3, Rohde & Schwarz GmbH, Munich, Germany). To evaluate the MR signal reception capabilities of the SDR stick, a non-selective multi-echo T2 sequence was employed with following parameters: Rectangular Pulses, TE: 4 ms, 38 echoes. During the sequence, raw data containing both (suppressed) TX and RX signals were acquired using GNU-Radio. This raw data was subsequently analyzed in MATLAB, and the T2 relaxation curves were plotted. The experiment was conducted using tap water, a 0.25 mmol/mL contrast agent solution (gadofosveset) in water, and an oil phantom (PureDevices).

Our signal reception setup successfully captures signals, confirming its basic functionality, although signal quality is affected by the lack of electromagnetic shielding, which introduces noise. The impedance of the TX/RX switch matches 50 Ω while in RX mode / PIN diode switched off (S11: < - 60 dB) and low transmission loss (S21: - 0.28 dB) and is mismatched while in TX mode / PIN diode switched on (S11: - 0.58 dB) and high transmission loss (S21: - 31.15 dB). S11 was measured from coil and preamplifier port, S21 from preamplifier to coil port. Both return and transmission loss and the corresponding Smith chart are shown on Figure 3.

The T2 values amount as, 930.16 ± 38.21 ms for tap water, 96.95 ± 1.03 ms for the CA solution, and 144.58 ± 17.12 ms for the oil phantom. These values agree with values measured solely with low-field MR system (tap water: 915.0 ms, CA solution: 97.67 ms, Oil: 141.5 ms) and literature values at 0.5 Tesla, which range for water (500-900 ms), CA solutions (40-100 ms), and oil (50-200 ms) respectively [7,8]. These consistencies validate the setup's accuracy. For improvement, we suggest fully integrating an SDR transmission stick into GNU Radio, allowing cost-effective hardware use while relying on a single, user-friendly software platform. This optimization could reduce development costs and expand potential applications.

This project demonstrates that a functional MR signal reception path can be built affordably by combining cost-effective hardware with open source, user-friendly software which was confirmed by initial proof-of-principle T2 measurements. The required software, GNU Radio, is freely accessible and easy to operate, making this setup accessible even for users with limited technical expertise. This approach opens new possibilities for low-cost NMR applications, making the technology more accessible even beyond the MR community.
Lilli BREUER (Lüdenscheid, Germany), Maurice RÜGER, Tobias KRAATZ, Helena NAWRATH, Amir MOUSSAVI, Jens GRÖBNER
11:00 - 12:30 #47785 - PG323 Impact of decreased antenna shield spacing on antenna design and efficiency.
PG323 Impact of decreased antenna shield spacing on antenna design and efficiency.

Multichannel transmit systems in MRI at 7 T improve excitation homogeneity [1,2], preferring dipoles [3] and meander elements (ME) [4] as transmit elements. Implemented as local coils, they require considerable scanner space. To preserve patients and equipment space, an integrated 32-channel array [5] was installed at the DKFZ. Newer Siemens 7T MRI systems, however, employ smaller gradient coils, reducing installation space by two-thirds. This constrain affects antenna performance, as the H-field magnitude depends on RF shield height [6]. This study evaluates the impact of limited space on transmit capabilities, comparing the performance of ME of the current 32-channel system at different heights over the RF shield with a modified ME and bent dipole (BD) [7].

Modelling and EM simulations were done using CST Studio Suite (CST AG, Darmstadt, Germany). The transmit elements were designed for a Siemens Magnetom 7T system (Siemens Healthineers, Erlangen, Germany) equipped with a SC72 gradient coil at 12 mm distance to the bore liner. The original ME was simulated at 18 mm distance to the RF shield (h₁) and at 9 mm (h₂), to meet spatial constrictions, along a modified ME and BD designs (Fig. 1). Central feeding was co-simulated using a λ/2 balun (330 mm length, 50 Ω impedance) and a matching network with lumped capacitors. All resonant elements and RF shields were simulated as PECs. A lossy 1-mm thick RO4350B substrate was used. The elements were placed below a phantom (330x310x90 mm³) of tissue-simulating liquid (ε'r: 46, σ: 0.87 S/m) at distances of 20 mm (d₁) and 150 mm (d₂). Power (B₁⁺/√Pacc) and SAR efficiency (B₁⁺/√SAR) inside the phantom and coupling were evaluated, with results normalized to 1 W (RMS) of accepted power.

Table 1 shows antenna dimensions and S₂₁ coupling under varied loading. BDs required a small capacitive area for a smaller Lc to maintain central field distribution. At d₁, coupling remained near −20 dB for all elements, while it decreased at d₂ with reduced RF shield spacing. The original ME placed at h₁ showed the highest coupling (−4 dB), reduced to −9.89 dB at h₂. The modified ME had the lowest coupling, reducing S₂₁ by 50% compared to unmodified ME. All BDs maintained <−10 dB values. Contrary to prior work [6], shield proximity improved overall efficiency at short phantom distances (Fig. 2). BD showed higher B₁⁺/√Pacc and B₁⁺/√SAR peak values than the MEs, despite reduced z-axis coverage. At d₂, the element farthest from the RF shield showed superior power efficiency, opposite to the trend at d₁. In general, MEs designs outperformed BD, showing 33% lower B₁⁺/√Pacc. Antennas near the RF shield performed better in superficial phantom layers at d₁ (Fig. 3). Beyond 60 mm depth, all designs performed similarly. At d₂, MEs exhibited superior power efficiency, with no significant SAR efficiency variations. Reflections at the phantom edge caused minor efficiency curve fluctuations due to phantom size.

The impact of RF shield spacing on transmit performance was evaluated for ME and BD at 7 T. In MEs, longer meanders increase electrical length, requiring lower end capacitance (Ce) for compensation [4]. In the ME with short meander, reduced Ce was also required to maintain central field distribution, suggesting a combined effect of increased electrical length from closer RF shield proximity and a thinner microstripline. At larger phantom distances, MEs located farther from the RF shield showed higher power and SAR efficiency. As demonstrated in earlier work [6], increased shield spacing improves field penetration. However, the opposite trend was observed with a close load, suggesting that load proximity also influences field behavior. RF shield proximity improved transmission performance in superficial layers of the phantom, while efficiencies beyond 60 mm depth remained similar. At d₂, ME greatly outperform BDs. SAR efficiency remained similar within the phantom, proving to be independent of shield distance. Coupling was reduced for d₁ due to EM field concentration between coils and phantom, limiting field interactions with neighboring elements. At longer load distances, reduced RF shield spacing significantly reduced coupling across all elements. Lower coupling in all BDs indicated less power transfer to adjacent elements, due to lower B1+ efficiency.

Spatial limitations in MRI systems requires evaluation of transmit elements placed closer to the RF shield for next generation transmit arrays. ME demonstrated strong performance under all simulated conditions. At short phantom distances, MEs near the RF shield demonstrated both improved power and SAR efficiency, while larger shield spacing is preferred when transmitting at greater load distances. Intrinsic decoupling was overall superior for thinner ME. No gain was observed by using distributed capacitors for BDs. Ultimately, ME proved to be a strong candidate for implementation into arrays for future MRI multichannel transmit systems.
Andrea PINO RAMOS (Heidelberg, Germany), Mark E. LADD, Stephan ORZADA
11:00 - 12:30 #47799 - PG324 Investigation of mechanical stability of bore liner for a high-count UHF RF transmit array.
PG324 Investigation of mechanical stability of bore liner for a high-count UHF RF transmit array.

At 7 T, multichannel transmit arrays improve B₁⁺ homogeneity [1,2] typically using local transmit coils, which require substantial bore space within the scanner bore liner. To preserve space for patients and equipment, an integrated 32-channel array was installed at the DKFZ [3]. Newer Siemens 7T MRI scanners employ smaller gradient coils, reducing installation space by two-thirds. Reduced spacing between transmit elements and RF shield alters H-field distribution [4], affecting transmission performance. To enable array integration under these constraints, structural modifications to the bore liner constructed from fiber-reinforced plastic (FRP) were explored. Mechanical analysis focused on stress distributions, using Maximum Principal Stress (MPS) and von Mises Stress (SvM) [5], criteria suited to evaluate structural response in FRPs [6]. Alternative bore liner designs with integrated antenna slots were analyzed using finite element analysis (FEA) under conservative loading.

The modelling and finite element analysis (FEA) structural simulations were done with ANSYS Mechanical (ANSYS, Inc., Canonsburg, PA, USA) using a bore liner model from Siemens Magnetom 7 T system (Siemens Healthineers, Erlangen, Germany). Material data was provided by Maschinenfabrik Reinhausen GmbH (Reinhausen, Regensburg, Germany). The bore liner consists of E-glass/epoxy (roving, 79.5 wt.-% glass), with mechanical limits set by IEC 61462: 60 MPa axial and 120 MPa tangential stress. E-Glass Wet was simulated for its similar anisotropic properties. To accommodate the 32-channel array (Fig. 1), 32 antenna-sized slots (250×50 mm²) were introduced with spacing of 28 mm (xy-plane) and 50 mm (z-axis). Load simulations accounted for a combined mass (patient, table, and dedicated receive array) of 2000 N, with 1000 N applied per rail for symmetric loading. Four fixed supports (110×96 mm²) constrained the structure. An adaptive mesh was refined near critical regions. Three designs were analyzed: original, slotted with sharp edges, and slotted with 24 mm-radius edge rounding. For all models, MPS and SvM assessed the static structural response.

Fig. 2 and 3 show simulation stress distribution in the bore liner, viewed in lateral and base sections. Table 1 shows the maximum FEA values obtained for each case. For stress analysis, a MPS of 2.89 MPa was obtained for the original bore liner (A). Introducing 32 slots with sharp-edged corners increased the stress nearly twice compared to the original design, increasing to 7.18 MPa. Applying a 24 mm radius to the 32 slots (C) reduced the value to 5.84 MPa. In SvM calculations, the original structure (A) exhibited a stress value of 2.83 MPa. Introducing 32 slots with sharp corners increased the stress to 6.8 MPa, nearly 2.5 times higher than the original. Applying a 24 mm radius at the slot base reduced the stress to 5.81 MPa, representing a decrease of approximately 1 MPa compared to the sharp cornered design. Across all models, the stress values obtained in both analyses were well below the limits under internal pressure of 60 MPa and 120 MPa. The highest stress concentrations were consistently located near the borders of the supporting rails, with pronounced intensity in the central base area of the structure (Fig. 3 A-F).

The original bore liner consistently exhibited the lowest values across all failure metrics, serving as a comparison baseline. Introducing sharp-edges slots significantly increased stress, nearly tripling peak failure values due to geometric discontinuities acting as stress concentrators. These results align with previous work [5,7], showing that in FRPs stress concentrates around cut-out areas. Rounding the slots edges notably reduced peak stress, indicating improved load distribution, resistance to failure and reducing the stress concentration factor. Replacing sharp with rounded edges redistributes stress more evenly, consistent with established strength optimization strategies [6]. All stress levels remained below IEC 61462 limits, with a maximum of 7.18 MPa (~10% of max. stress limit), well within the E-glass allowable range. This suggests that the design modifications are likely to maintain structural integrity under the applied load conditions. Top region of the liner showed minimal stress (in contrast to stress concentration along rail borders), suggesting it as a viable area for RF coil integration under reduced mechanical loading.

High-count integrated arrays are incompatible with the spatial constraints of new Siemens 7 T systems. Structural modifications to the bore liner were evaluated to enable array integration and preserve performance while maintaining mechanical stability. FEA simulations showed that refining the slot geometry with rounded transitions effectively decreased principal stresses concentrations and improved load distribution. These findings support the feasibility of slot integration, provided that key geometric features are optimized for mechanical stability.
Andrea PINO RAMOS (Heidelberg, Germany), Mark E. LADD, Stephan ORZADA
11:00 - 12:30 #47743 - PG325 Loop Inductive Coupling for Efficient Solenoid Matching in Low-Field MRI study.
PG325 Loop Inductive Coupling for Efficient Solenoid Matching in Low-Field MRI study.

Impedance matching plays a critical role in optimizing the performance of radiofrequency (RF) coils in Magnetic Resonance Imaging (MRI), especially under low magnetic field conditions where the signal-to-noise ratio (SNR) is inherently limited[1, 2]. Traditional matching circuits rely on variable capacitors, which are not only sensitive to loading conditions but also contribute to noise and increase setup complexity. In this project, we explore an alternative, passive method of impedance adaptation using loop inductive coupling to simplify the matching procedure of a solenoid coil. The objectives are component cost and complexity reduction, and SNR improvement, in the context of 0.1 T MRI exploration.

Experiments were conducted on an open 0.1 T vertical-field electromagnet (EAR 50 L, Drusch, France) (Fig. 1). This resistive magnet is powered by a high-stability power supply and water-cooled during operation. This system also embeds magnetic field gradient coils and shimming coils (B0 homogeneity correction on 3 first order and 5 second order components). The transmit-receive solenoid coil[3] consists of a 12 turns solenoid (125 mm x 65mm) made with 6 mm cross-section copper tube. It is tuned to the Larmor frequency thanks to three parallel 22 pF ceramic capacitors and two 0.8 – 8 pF variable capacitors directly soldered onto it. To facilitate precise tuning prior to acquisition, resonance is achieved by adjusting the B0 field strength through modulation of the magnet power supply current. A secondary non-resonant inductive loop, mechanically repositionable along the solenoid long axis, is used to adjust impedance matching instead of an additional circuit as traditionally done[4]. Matching efficiency was evaluated using a Vector Network Analyzer (ZNB4, Rohde & Schwarz). Two loop positions were compared: Pos0 = the loop is positioned at the solenoid entrance, and Pos1 = the loop is positioned around the solenoid at a location minimizing antenna’s return loss - S11 (dB). S11 and quality factors were measured with and without the phantom load (a cylinder filled with tap water mixed with copper sulfate (CuSO₄) to shorten relaxation times). MRI data were acquired on the phantom using three different sequences: 2D Gradient Echo (TE = 3.8 ms, TR = 202 ms, FA = 60°, FOV = 250mm2, matrix = 64 x 64), 2D Fast Spin Echo (TE = 5.06 ms, TR = 500 ms, ETL = 5, FOV = 250mm2, matrix = 64 x 64), and 3D Spin Echo (TE = 5.78 ms, TR = 500 ms, FOV = 250mm2, matrix = 64 x 64). NMR signal profiles, noise background and nutation curves were obtained with standard one pulse sequence and were processed with MATLAB. The mean signal and the noise standard deviation were extracted from regions of interest defined using the graphical tool integrated into the system console (Chameleon 4, RS2D, France). The SNR was then calculated by accounting for the Rayleigh distribution of noise in magnitude images[5] as follows: SNR= Mean(Signal)/(SD(Noise))× √(2- π/2) (1)

At Pos1, the loaded coil achieved a minimum S11 of –40.68 dB at 4.54 MHz vs -8dB at Pos0 (Fig. 2). Q factor calculated as the ratio between Qunloaded and Qloaded was 1 in both cases. NMR signal peak showed good field homogeneity in both cases (<13 ppm). Signal intensity of one pulse acquisition increased by 59.4% in Pos1 compared to Pos0 (Fig. 3.A). Standard deviation of noise acquisition also increased by 27.6% though. Nutation experiments confirmed same excitation pulse calibration led to better signal reception in Pos1 (Fig. 3.B). Image acquisitions showed significant enhancement in signal intensity at Pos1, with decreases or only minor increases in background noise depending on the evaluated slice, resulting in an overall improvement of SNR across all slices for the three imaging sequences (Table 1).

The use of an inductively coupled loop for impedance matching presents multiple advantages for low-field MRI systems. It eliminates the need for noise-prone electronic components, enables rapid and user-friendly matching adjustments, and reduces development costs. Additionally, this method allows flexible adaptation of coil configurations to varying subject morphologies or phantom geometries that lead to different filling factors, improving overall signal capture. The measured SNR gains demonstrate the method’s clinical potential aligning with current trends in developing lighter and cost-effective low-field MRI systems.

We demonstrate the feasibility of achieving highly efficient and flexible impedance matching for a solenoid coil using passive inductive coupling in a 0.1 T MRI system. This approach significantly enhances SNR without electronic components, reduces system complexity, and opens new perspectives for the development of accessible point-of-care MRI technologies.
Marie-Anaïs PETIT (Geneva, Switzerland), Redha ABDEDDAÏM, Marc DUBOIS, Delphine BECHEVET
11:00 - 12:30 #47625 - PG326 Design and Simulation-Based Optimisation of a Combined ¹H/²³Na/³⁹K RF Coil for 7T MRI.
PG326 Design and Simulation-Based Optimisation of a Combined ¹H/²³Na/³⁹K RF Coil for 7T MRI.

Combining proton(¹H), sodium(²³Na), and potassium(³⁹K) imaging offers significant clinical potential for investigating Na/K pump deficiencies associated with conditions like epilepsy, stroke, or cancer(1–3). While triple-frequency coils(¹H/²³Na/³⁹K) have been demonstrated for preclinical application(4), no equivalent for human has been reported to date. Previously, we presented separate coil designs: a 16-channel ²³Na-loop/¹H-dipole array(5), and a ³⁹K birdcage coil(6) for 7T MRI. In this study, we introduced a novel triple-resonant RF coil for human head imaging, integrating our previously developed coils. EM simulations were performed to optimise coil structure in terms of S-matrices and B₁⁺ performances and assess RF safety with SAR₁₀g using a human head model.

The triple-frequency coil combines previously developed 16ch ²³Na-loop/¹H-dipole array(Fig.1a) and ³⁹K birdcage coil(Fig.1b). The ³⁹K birdcage was inserted into the existing ²³Na/¹H structure, forming a double-layered coil. Four orientations were simulated to identify the optimal configuration(Fig.1c): 1.0° rotation-birdcage sources aligned symmetrically with dipoles;2.22.5° rotation-birdcage sources placed midway between dipoles;3.45° rotation-birdcage sources realigned with dipoles;4.dipoles directly mounted onto the birdcage instead of the loop layer. Finite-difference time-domain(FDTD) simulations(Sim4Life 8.2,ZMT,Switzerland) were performed with a spherical phantom(d=15 cm,εᵣ=81,σ=0.95 S/m). Dipoles were modelled as centre-shortened structures on FR-4 substrates(εᵣ=4) with lossy metal(σ=5.8×10⁷S/m). Loop coils and birdcage elements were modelled as perfect electric conductors (PEC) with zero thickness surfaces. Alternate loop coils were elevated by 8 mm to facilitate voxelisation. An RF screen(PEC) was also included. Individual nuclei simulations (¹H:297.2 MHz, ²³Na:78.6 MHz, ³⁹K:13.9 MHz) were performed separately, with other coil elements present but inactive. Co-simulation (OptenniLab 5.2,Finland) adjusted lumped element values for tuning and matching. S-matrices and circularly-polarised(CP) B₁⁺ maps were extracted to assess coil performance (Figs.2,3). Separate simulations were performed for single-nuclei elements for comparison. Following phantom optimisation, RF safety was evaluated using the Duke head model at 2-mm iso resolution(Fig.4a). B₁⁺ and SAR₁₀g maps were interpolated to 1-mm iso resolution, normalised to 1W total input power, and exported to Matlab for analysis.

S-parameters for all setups were compared to independent single-nuclei coils (Fig.2). Setup 4 (dipoles on birdcage) provided optimal 1H performance, achieving the lowest reflection (Sᵢᵢ=-25.6 dB) and best decoupling (Sᵢⱼ<-13.4 dB). ²³Na and ³⁹K coil performances were consistent across setups, closely matching individual coil benchmarks. B₁⁺ maps indicated significant orientation dependence for ¹H imaging(Fig.3). Setups 1–3 demonstrated reduced B₁⁺ efficiency(17–54% decrease in mean B₁⁺) compared to independent ¹H-dipole array, while Setup 4 markedly improved mean B₁⁺ by 66.7%. For ²³Na, all setups showed increased B₁⁺ of 43–68% with minimal orientation dependence. The ³⁹K coil showed consistent increase of 17–20% in B₁⁺ across all setups. Due to superior performance across all nuclei, Setup 4 was selected for safety evaluation. Duke head simulations confirmed good matching(Sᵢᵢ<-15 dB) and isolation(Sᵢⱼ<-7 dB). B₁⁺ on the central slice and maximum intensity projection(MIP) for SAR₁₀g are shown in Fig 4. Maximum SAR₁₀g values were reported as 0.25W/kg(¹H), 0.12W/kg(²³Na), and 0.24W/kg(³⁹K).

In this study, we proposed a compact triple-resonant coil integrating ¹H, ²³Na, and ³⁹K imaging elements at 7T. Setup 4 provided the optimal balance of coil performance, demonstrating excellent S-parameters and efficient B₁⁺ fields. This advantage was most pronounced for ¹H, likely due to dipoles mounted directly on the birdcage, reducing shielding effects in other setups. Notably, setups 1 and 3 yielded similar B₁⁺ magnitudes but differed in spatial orientation, with the ¹H field pattern clearly rotating by 45° between these configurations. In Duke simulations, the coil showed maximum SAR₁₀g approximately 30% higher for ¹H compared to previously reported values for separate ¹H-dipole array, concentrated mainly near the ears due to their proximity to dipole elements. SAR₁₀g levels for ²³Na and ³⁹K remained comparable to previously validated coil designs, indicating minimal additional risk introduced by combining elements. However, additional safety validation remain necessary with human evaluations.

We have demonstrated a promising initial design and simulation-based optimisation of triple-resonant(¹H/²³Na/³⁹K) RF coil at 7T. The optimised coil(Setup 4) achieved excellent multinuclear performance with SAR evaluated in simulations using a realistic human head model, highlighting its potential clinical utility. Future work will focus on coil fabrication, bench testing, and safety validation.
Menglu WU (London, United Kingdom), David W. CARMICHAEL, Özlem IPEK
11:00 - 12:30 #47836 - PG327 Optimizing Signal-to-Noise Ratio at 7T MRI Using Algorithmic Selection in a 16-Channel Receive Array.
PG327 Optimizing Signal-to-Noise Ratio at 7T MRI Using Algorithmic Selection in a 16-Channel Receive Array.

High-field MRI systems benefit from parallel receive coil arrays, which can significantly enhance the signal-to-noise ratio (SNR). Current state of the art research increase the number of coils as a means to increase the SNR [1-4], where the coil geometry is not optimized. One of the primary challenges in multichannel receive arrays is interelement decoupling. This decoupling is a key limiting factor in optimizing both the individual coil geometry and the overall array configuration for maximum signal-to-noise ratio (SNR). Traditional decoupling techniques, such as partial coil overlap and preamplifier decoupling, inherently constrain the flexibility of coil design. Recently, novel coil designs based on transmission line modifications [5, 6] have been introduced as self-decoupled elements. These coils maintain effective decoupling and performance even when their shape deviates from the conventional circular form, which makes them a good candidate for optimized coil geometry. This study proposes a novel approach to designing receiving coil array geometries using an algorithm to find the optimal coil shape combination that maximizes SNR in user defined regions using a limited number of coils.

420 coils were modeled using 100 line-segments per coil. The coils were placed on a cylindrical plane 2 cm from the phantom. All coils have a wire length of 31.415 cm and consist of various shapes (squares, triangles, vertical and horizontal rectangles, circles and figure eights). A homogeneous cylindrical phantom was modeled (height = 20 cm, radius = 10 cm, σ = 0.55 S/m, ε = 80, ⍴ = 997 kg/m^3) with a voxel resolution of 6mm. The electric field (E) and magnetic flux density (B) were simulated per coil individually in the phantom using the MARIE solver [7] in MATLAB. The loss matrix is calculated as Q = dV ∑ σ(r)E(r)E(r)^H, where dV is the voxel volume. The B1 fields are calculated as B1- = (Bx - 1i*By)/√2 and B1+ = (Bx + 1i*By)/√2. The SNR per voxel is then calculated as SNR(r) = B1- x/√(x^H*Q*x), where x is a weight vector between the coils which is to be found for maximum SNR. The solution to this optimization problem is well known and will not be discussed here. 2 regions are defined in the phantom, the periphery (|z| < 5 cm, r > 8 cm) and the center (|z| < 5 cm, r < 6 cm), as shown in Fig. 2 (a). The optimization goes as follows. First a region of interest is chosen (periphery or center), then the average SNR of all coils is in this region is calculated individually. The one with the highest mean SNR is added to the array. Next all non selected coils are individually tried in combination with the existing array. The one resulting in the highest mean SNR is added to the array. This process is repeated until the array consists of 16 coils (Fig. 1). As a comparison a conventional equispaced 16 coil circular loop array is also examined. Loops were placed in two rows (Fig. 2(b)) and each loop was of 10cm diameter.

The found geometries of the optimized arrays are shown in Fig. 2 (c-d). Calculations of the SNR, portrayed in Fig. 3, demonstrate a significant improvement for the optimized coil arrays compared to circular loop array. The periphery optimized array shows a mean increase of 67% of the mean periphery SNR and a 15% decrease in the mean center SNR compared to the loop array. The center optimized array shows a mean increase of 17% of the mean periphery SNR and a 6% increase of the mean center SNR compared to the loop array.

With the approach shown in this manuscript, we demonstrated that improvement in peripheral SNR can be achieved by optimizing the coil geometry and its position within array. While algorithmic optimization outperforms conventional loops, it does not guarantee a globally optimal solution, an improved algorithm might yield better results. Future research should include algorithm optimization strategies. The assumption of complete decoupling does not hold for all coil types, in this research transmission line coils are assumed. If other coil types are used additional decoupling hardware might be necessary for the SNR to be improved using these coil geometries. Further improvement in SNR can be achieved by considering specific clinical applications, such as optimizing for a specific part of the brain. Future research will focus on realistic human body models. Also, as a future work optimization would be performed on higher channel number such as 32, 64 or even higher.

Algorithmic optimization has been shown to improve SNR at 7T using a 16-channel receive coil array. This approach provides a promising avenue for enhancing image quality in high-field MRI systems.
Yannick LARET (Eindhoven, The Netherlands), Bart ERICH, Irena ZIVKOVIC
11:00 - 12:30 #47661 - PG328 RF array coil and passive dipoles for spine MRI at 7T.
PG328 RF array coil and passive dipoles for spine MRI at 7T.

MRI is a modality of choice for spine imaging as it allows optimal visualization of soft tissues. In the last decades, Ultra-High-Field scanners operating at 7 T have been developed with the aim of improving signal-to-noise ratio (SNR) and resolution. However, these technical advantages came at the cost of new challenges such as increase of the specific absorption rate (SAR) and inhomogeneities of the radiofrequency field B1 [1]. These inhomogeneities are mainly related to the shorter operating wavelength and have changed the concept of optimized RF coils. Indeed, at UHF, volumetric coils might not be optimal and surface coils adapted to a given region of interest (ROI) might be preferred. Our target area, the thoracic or lumbar spine, is 25-30 cm long, less than 1 cm in diameter, and lies at 4-6 cm under the skin [2]. The optimal coil design for this region for UHF MRI is not yet known [3]. We propose a coil array specifically adapted for the thoracic and lumbar spine geometry. It is made of 8 loops that can be independently controlled in amplitude and phase, thus allowing for B1 shimming and parallel transmit [4][5]. While some studies have shown the interest of using active dipoles to improve in depth transmission [6], we provide evidence that B1 intensity and homogeneity in the ROI can be improved by adding carefully placed passive dipoles to our design. In addition, maximum SAR can be reduced thereby ensuring a better transmit efficiency.

Eight 10 cm diameter loops, segmented with three 2.7 pF capacitors were positioned in two rows and overlapped to minimize inter-element coupling. Each loop was tuned and matched to the Larmor frequency of 297.2 MHz and connected to the MRI scanner through an interface box (Stark Contrast, Germany). In addition, two metallic stripes of 600 mm length, 12.5 mm width and segmented in their middle with 10 pF capacitors were placed under the outer edges of the coil array in order to act as passive dipoles. Simulations of this setup were run on the time-domain solver of CST Studio Suite with a Finite Integration Technique. In both numerical simulations and experiments, the array was placed on a foam spacer 10 mm above the 2 dipoles which were located 10 mm above a 480x350x175 mm3 phantom filled with a dedicated body liquid (εr=58,2 and σ=0,92 S.m-1). (Fig. 1) Experiments were conducted at 7T (Magnetom TERRA, Siemens Healthineers, Erlangen, Germany). B1+ maps were acquired with a turboFLASH sequence [7]. A reference static excitation was selected, with each channel set to the same amplitude and a 180° phase shift between the two rows in order to produce constructive currents in the center of the array [8]. The performance of the array and the two dipoles combined was compared to the performance of the array alone. To do so, a region of interest corresponding to the hypothetic position of the spinal cord was defined as a 300x3x3 mm3 box lying 5 cm deep into the phantom.

Simulations indicated that the addition of the 2 dipoles improved the average amplitude of the field by 21% and reduced the relative standard deviation by 34%. The maximum SAR (in the whole phantom) was reduced by 26% and thus the transmit efficiency (defined as the ratio between average amplitude and square root of maximum SAR) was improved by 40% in the ROI. (Table 1) Experiments confirmed that the 2 dipoles were effectively focusing the field in the central region (Fig. 2). The average B1+ field was improved by 25% while the Relative Standard Deviation was reduced by 15% in the ROI (Table 1).

In the case of the array alone, the current patterns applied in the loops to generate a bright B1+ field in the ROI also lead to undesirable illuminations under the outer edges of the array. By adding the two dipole-like elements and tuning them so that their surface currents become out of phase with those of the outer edges of the array, we can offset the lateral contributions and thus cancel the B1+ field outside of the desired area (Fig. 3) The experimental results will need to be reproduced and tested for different ROIs to determine error margins and identify possible causes of mismatch with the simulations.

Our results illustrate that through a better distribution of the transmit field, the addition of passive dipoles can improve the classic coil array design. Simulations indicate a gain in both B1+ homogeneity and intensity, and also predict a reduction of the maximum SAR. Experiments further confirm this working principle and show that the dipoles effectively focus the field on the ROI. The in vivo assessment of this prototype is under progress.
Hugo AMAT (Marseille), Aurélien DESTRUEL, Amira TRABELSI, David BENDAHAN, Virginie CALLOT, Stefan ENOCH, Redha ABDEDDAIM, Marc DUBOIS
11:00 - 12:30 #47887 - PG329 A Multi-Vendor compatibility Study of a Wireless RF Coil for Breast Imaging.
PG329 A Multi-Vendor compatibility Study of a Wireless RF Coil for Breast Imaging.

Development of radiofrequency (RF) coils for clinical MRI focuses on enhancing image quality, patient safety, and comfort. Wireless RF coils operating by inductive coupling with the body birdcage coil (BC) are an alternative to conventional cable-connected RF coils [1, 2, 3]. These coils offer significant advantages over traditional cable-connected coils, including reduced electromagnetic interference and improved patient comfort since no thick cables are used. However, since wireless coils are usually operating in transceiver (TxRx) mode, it is necessary to perform manual calibration of the reference Tx voltage to avoid inhomogeneity of the B1+ field [2]. It complicates clinical workflow and increase scan time. To address these limitations, we have developed a concept of a wireless receive-only RF coil (Rx-only) for 1.5T MRI [1], specifically designed for breast imaging where dedicated multi-channel coils are often unavailable across different vendor platforms. The design is based on a Helmholtz coil with two passive diode traps for detuning. This means that imaging setup with wireless coil is performed in Tx mode similarly to traditional setup with cable connected Rx coils. In receive mode, the Rx-only wireless coil is tuned and is able to detect the MR signal, which then is injected to Rx-chain of MR scanner via inductive coupling with BC. Therefore, it makes possible to use this Rx-only coil without specific adjustments [1, 2]. In this study, we evaluate the multi-vendor compatibility of the proposed Rx-only wireless coil through experimental validation with 1.5T (Larmor frequency 63.8 MHz) MRI systems of major vendors (GE, Siemens, Philips). Results demonstrated the coils ability to perform MR imaging without disrupting standard imaging protocols, offering a practical solution for clinical MRI across different vendors.

The experimental study was performed using our previously developed Rx-only coil prototype [1]. This is a Helmholtz coil incorporating two passive LC traps (with inductance of 67 nH and a capacitance of 89.5 pF) inserted into the gap of the coil conductor (Fig.1d). Each inductance is connected in series with a pair of back-to-back Shottky diodes. During the transmit mode, forward-biased diodes activate the traps, shifting the resonance frequency away from the Larmor frequency. In the receive mode, reverse-biased diodes disable the traps, that allows to operate Rx wireless coil in receive mode. Experimental study was performed on three different 1.5T MRI systems using the same spherical phantoms filled with a NiCl2 water solution. Siemens Espree Magnetom was used to acquire phantom images and flip angle (FA) distributions using the double-angle method [4] (TR/TE = 9000/4.76 ms, matrix = 128×128 mm²). For Siemens system SNR calculations were performed with FA = 90°. FA mapping employed gradient-echo sequences with FA of 40° and 80° for the double-angle reconstruction. GE Optima 360 system was used for comparative analysis of the Rx-only coil versus 8-channel HD Breast coil using identical scan parameters. On the Philips Achieva system, qualitative image assessment was performed against a SENSE breast 7-channel coil. All experimental setups for each vendor platform are shown in Fig. 1 a-c.

Figure 2a shows the phantom image acquired with the Rx-only coil on the Siemens system, demonstrating an SNR of 650. In comparison, the BC-only configuration achieved a lower SNR of 115. For the GE scanner, the phantom image acquired with the Rx-only coil (Fig. 2b) was compared with 8-channel HD Breast coil (Fig. 2c). Additionally, Philips system evaluations of the wireless Rx–only coil (d) and 7-channel SENSE coil (e) are presented. On GE and Philips systems it is not possible to disable the transmit coil by software, so it is not possible to obtain correct noise maps for SNR assessment. Figure 3 presents the FA distribution maps obtained from Siemens scanner for: (a) the Rx-only coil and (b) BC-only configuration.

The results demonstrate successful multi-vendor compatibility of the Rx-only coil across three MRI vendors. The design overcomes vendor-specific limitations like absence of manual voltage calibration required by Tx/Rx wireless coils, particularly critical for GE and Philips systems. The wireless coil provides consistent performance without protocol modifications and has much lower cost.

The wireless receive only coil provides multi-vendor compatibility with 1.5T MRI-systems eliminating manual calibration of Tx voltage. This design offers a cheaper and simpler alternative to conventional Rx coils. - This work was supported by state assignment No. FSER-2025-0018 within the framework of the national project “Science and Universities” -
Aleksandr FEDOTOV (Saint-Petersburg, Russia), Pavel TIKHONOV, Georgiy SOLOMAKHA, Alexandr KOZACHENKO, Anna HURSHKAINEN
11:00 - 12:30 #45925 - PG330 Traveling-Wave MRI Extends Surface Coil Coverage.
PG330 Traveling-Wave MRI Extends Surface Coil Coverage.

Conventional surface coils in MRI are inherently limited to a field-of-view (FOV) constrained by their physical dimensions. The traveling-wave MRI (twMRI) approach overcomes this limitation by enabling large-FOV imaging, as previously demonstrated [1]. In this work, we present an enhanced twMRI system combining: (i) a parallel-plate waveguide (PPWG) that eliminates cutoff frequency restrictions, and (ii) a bioinspired surface coil design [2]. Building on prior work showing metamaterials can improve signal-to-noise ratio (SNR) in this configuration [3], we address a fundamental limitation of traditional twMRI implementations. The primary objective of this study was to experimentally validate that our twMRI-PPWG system with a bio-inspired surface coil can achieve an extended FOV beyond the coil's physical dimensions while maintaining high image quality.

A bio-inspired surface coil, as described in [2], was employed for RF signal transmission. The metamaterial structure, designed in a nonagonal configuration, consisted of nine copper strips (500 mm × 10 mm × 35 μm, σ = 5.96 × 10⁷ S/m) laminated onto FR4 substrates (ϵ = 4.35, tanδ = 0.008, 1 mm thickness). Each strip featured a periodic array of 49 C-shaped unit cells (5 mm diameter, 3 mm gap width, 2 mm conductor width; Fig. 1.b) arranged linearly in a 1×49 configuration (Fig. 1.a). Phantom imaging experiments were conducted using a saline-filled parallel-plate waveguide (PPWG) with the metamaterial positioned inside (Fig. 1.c). The bio-inspired surface coil was placed externally, aligned parallel to the waveguide plates to maximize coupling. To validate the approach, sagittal phantom images were acquired with a standard gradient-echo sequence (TE/TR = 4.39/200 ms, FOV = 60 × 60 mm², matrix = 256 × 256, flip angle = 45°, slice thickness = 1 mm, NEX = 4). For comparison, additional images were obtained using both the bio-inspired coil and an in-house birdcage coil (length/diameter = 5 cm/4 cm, 4 rungs). All experiments were performed on a 7T/30 cm Bruker scanner (Bruker BioSpin MRI GmbH, Germany) and cylindrical phantom (diameter/length = 4 cm/ 10 cm) filled with saline solution.

Phantom images acquired with the nonagonal metamaterial confirmed the feasibility of the approach (Fig. 2b). Signal-to-noise ratio (SNR) analysis yielded the following values: SNR(nano) = 99, SNR(inhBC) = 106, and SNR(bio) = 115. A profile comparison of the twMRI and the in-house BC coil data (Fig. 2.a) revealed similar performance between the two methods. However, the twMRI signal exhibited a gradual decline with distance from the coil, reaching a maximum decrease of 27% relative to the initial signal.

Notably, the twMRI image avoided the pronounced signal drop observed at the end rings of the in-house BC coil profile (Fig. 2.a), demonstrating a key advantage. Furthermore, the phantom images (Fig. 2.b–c) indicated that the twMRI provided greater coverage than the bio-inspired surface coil. This is a rather encouraging result, as the signal was transmitted 58 cm away from the phantom's location.

Our results demonstrate that the twMRI approach achieves a significantly larger FOV than conventional surface coils, exceeding the coil’s physical dimensions while maintaining competitive image quality. This work represents a key advancement in the practical implementation of twMRI, enabling expanded anatomical coverage without compromising sensitivity—a critical requirement for many imaging applications.
Sergio SOLIS-NAJERA, Jelena LAZOVIC, Saul RIVERA DE LA LUZ, Alfredo RODRIGUEZ (Mexico City, Mexico)
11:00 - 12:30 #47600 - PG331 Metasolenoid resonator for controlling magnetic field in 3T MRI.
PG331 Metasolenoid resonator for controlling magnetic field in 3T MRI.

Over the past decade, there has been an increasing interest for radiofrequency devices dedicated to imaging of specific anatomical areas, such as breast, wrist etc... Metamaterial resonators at 1.5T [1,2] and ceramic resonators at 3T [3] have already been shown to be effective for targeted MRI applications but experimental data related to a metamaterial volumetric resonator operating at 3T are missing. Here we propose a passive metamaterial resonator designed for a 3T MRI scanner. In addition, we analyzed the influence of two birdcage excitation modes.



The design of the metasolenoid illustrated in Figure 1 was inspired by a previously reported volumetric resonator operating at 1.5T [4]. It consists in four PCB plates soldered together in a rectangular box shape. Each plate contains 10 etched copper strips so that the entire device is composed of 10 split-loop resonators, with a gap on each plate for capacitors. Its resonance frequency was tuned to 123.2 MHz by adding three 3.3 pF and one 2.7 pF ceramic capacitors (Johanson Technology and Knowles) in the gaps of each SLR. The resonance frequency was also characterized by connecting a non-resonant loop antenna connected to a vector network analyzer (MS2026C, Anritsu). A tissue-mimicking liquid (MVG, France) with a relative permittivity of 61.9 and a conductivity of 0.8 S/m was used to create the phantom by filling a 2.4 L glass bottle. The experiments were performed in a 3T Vida MRI scanner (Siemens Healthineers, Erlangen, Germany) using a whole-body birdcage coil (BC) for both signal transmission and reception. Flip angle (FA) maps were acquired in the sagittal orientation using a pre-pulse RF with a TFL readout sequence [5], TR/TE = 7030/1.8 ms, FA = 8°, Sinc pulse = 80°, FOV = 289 x 289 mm, matrix size = 128 x 128 and 13 slices of 10 mm thickness. The reference voltage was calibrated for each set of measurements. The birdcage excitation was used as a reference. We performed measurements with two different polarizations : circular polarization (CP) with both birdcage ports excited in quadrature and linear polarization (LP) by selecting only the birdcage port that couples to the metasolenoid resonator.



The reflection coefficient shown in Figure 2 was measured using a non-resonant measurement loop in order to estimate the resonant frequency of the metasolenoid. A sharp dip could be observed near the Larmor frequency when the metasolenoid was not loaded, indicating that the metasolenoid was properly tuned. Accordingly, for the loaded metasolenoid, a reduction of the resonance quality factor was observed. The experimental setup and FA maps are shown in Figure 3. Panels B–E show the FA map in the mid-slice of the phantom. The FA averaged in the ROI and the reference voltage are given for each measurement. Panels B–C show the Birdcage reference coil for CP and LP excitations, respectively, panels D–E show the results with the meta-solenoid. Table 1 presents a summary of all results. As compared to the reference birdcage-only experiment, the addition of the metasolenoid was able to significantly reduce the reference voltage required to achieve the target FA in the phantom ROI. Transmission efficiency was calculated as the ratio between the averaged FA in the ROI and the reference voltage. Using the circular polarization, a 3.2-fold transmission efficiency increase was measured. A much larger i.e. 5.8-fold increase was measured using the linear BC polarization.



The present results indicate that a metasolenoid passive resonator can largely improve transmit efficiency in a 3T MRI system. The corresponding enhancement factors were comparable to those expected by simulations [6]. Of interest, transmission efficiency was improved differently according to the birdcage polarisation. More specifically, using the BC linear excitation led to a further reduction of the input power required to reach a given FA thereby illustrating an improved transmission efficiency. When comparing results from each polarisation, we observed a +26% improvement of the transmit efficiency with the LP which has not been previously reported in the literature. In other words, the optimized response from the resonator was obtained when the BC port was excited so as to generate a magnetic field collinear to the metasolenoid axis. As illustrated by the results obtained with the CP, the metasolenoid did not interact with the BC when the magnetic field was generated in a perpendicular plane.



The metasolenoid resonator designed for the present study was able to largely improve the magnetic field transmit efficiency within a targeted region. A three-fold increase was obtained with a quadrature driven birdcage. Of interest, the transmit efficiency was further improved (six-fold) for the linear driven birdcage. Additional numerical SAR studies will be conducted in order to confirm the benefits of the metasolenoid approach in vivo.


Dmitrii TIKHONENKO (Marseille), Kaizad RUSTOMJI, Christophe VILMEN, Arnaud DURAND, Georges NOUARI, Stefan ENOCH, Redha ABDEDDAIM, Marc DUBOIS, David BENDAHAN
11:00 - 12:30 #47024 - PG332 Cylindrical Metasurface for Efficient Travelling-wave Excitation for Head Imaging at 7T.
PG332 Cylindrical Metasurface for Efficient Travelling-wave Excitation for Head Imaging at 7T.

Ultra-high-field (UHF) MRI holds great potential for brain studies, offering SNR and CNR compared to clinical (1.5 and 3T) MRI [1]. At 7T (297 MHz), the shorter wavelength (~10 cm in the human body) results in severe field inhomogeneities and standing-wave effects, limiting uniform radio frequency (RF) coverage. More than a decade ago, the traveling-wave (TW) MRI method was introduced [2]. This method avoids local transmit (Tx) coils which usually requires multiple channels and complex magnitude/phase configurations. However, TW MRI has a significant drawback of low B1+ (Tx-efficiency) [3]. Several methods have been proposed recently to improve the efficiency and homogeneity of TW MRI excitation using additional passive structures: a coaxial waveguide for brain imaging [4], high-permittivity dielectric as a bore liner [5] or a local dielectric waveguide (DW) surrounding a human head [6]. However, all these structures are bulky and causing aliasing due to water signal. In this work, we propose a thin and light cylindrical metasurface (MS) represented with a flexible PCB to improve the efficiency of TW MRI at 7T that exhibits the Tx-efficiency similar to one of a DW [6].

To achieve an equivalence between a MS and a dielectric slab (DS) (th=28 mm, ε=52), the MS unit cells were designed to mimic the DS's slow-wave factor (for the Tx field localization effect). To reach equivalence, the phase shift through the dummy parallel-plate waveguide section containing one chain of the MS unit cells (a cross of сopper strips loaded with lumped capacitors C) must match that of the same length waveguide section with the DS fraction. Numerical models of MS and DS waveguides are shown in Figure 1A,B. The optimal MS unit cell (period of 17 mm, strip width of 0.3 mm) required 3.9 pF capacitance. A full model of the cylindrical MS surrounding a human head model (Figure 2A) was built upon a previously optimized single-element design. In the practical realization, copper strips of the MS are assumed be made on two sides of a thin and flexible polyimide PCB (th=0.05 mm, ε=3.5) ending with parallel-plate printed capacitors (square side of 2.4 mm) (Figure 2B) as used in [7]. The size of the parallel-plate capacitors to replace the lumped ones was determined using a phase delay comparison in a waveguide at 297 MHz. The B1+ field was calculated for the MS loaded with the Duke voxel model [8]. A CP patch antenna similar to [6] was placed at a 140 cm distance from the top of the voxel model to provide TW excitation. The complete numerical model is presented in Figure 2C. The cylindrical MS design was optimized by varying its length, radius of the cylinder and axial displacement relative to the head model to achieve optimal B1+ homogeneity and Tx-efficiency. B1+ field homogeneity was assessed as coefficient of variation (COV) of B1+ across a 180-mm-thick transverse slab that includes the entire brain. The SAR was also calculated using the CST Legacy averaging method over 10 g of tissues. The SAR-efficiency was defined as the ratio of the mean B1+ to the SAR level. For comparison, the DW from [6] also were simulated in the same TW setup.

The correspondence between the MS and the DS was evaluated using the relative slow factor (RSF) shown in Figure 1C. The best coincidence occurred at an RSF value of 0. The frequency-dependent RSF reached a minimum of 297 MHz, demonstrating that the optimized MS provided the same phase delay as the DS at the Larmor frequency of a 7T scanner. Figure 3A presents B1+ in the central sagittal plane of the model obtained using different configurations. Figure 3B shows the parametric results obtained in the presence of the proposed MS, including the B1+ homogeneity, Tx-efficiency, pSAR10g and SAR-efficiency values calculated for a fixed MS diameter of 280 mm and various lengths. Figure 4A shows numerically simulated B1+ in the central sagittal slice using the optimal configuration (410 mm length, 280 mm diameter) of the MS and the DW.

As seen in the table (in Figure 3B), the MS with a length of 410 mm provides the best compromise between the COV, Tx-efficiency, pSAR10g and SAR-efficiency. As shown in Figure 4B, the proposed MS substantially improves the RF field distribution compared to the DW. Importantly, the proposed MS provides substantially better B1+ homogeneity (by 0.4%), Tx-efficiency (by 22.3%), pSAR10g (by 7.5%) and SAR-efficiency (by 27.1%) compared to the state-of-the-art DW, while also possessing advantageous features such as reduced thickness and weight improving the patient’s comfort.

In this work, we numerically investigated a novel cylindrical MS for human head TW MRI at 7T with improved efficiency and homogeneity. The MS geometry is based on a grid consisting of copper strips loaded with parallel-plate capacitors printed on a flexible polyimide substrate. The proposed MS can be used in 7T MRI applications, where convenient access and high Tx-efficiency are required simultaneously (e.g., in fMRI).
Kristina POPOVA (St. Petersburg, Russia), Georgiy SOLOMAKHA, Stanislav GLYBOVSKI, Xiaotong ZHANG, Yang GAO
11:00 - 12:30 #45923 - PG333 Open waveguide loaded with a sandwich-like metamaterial for preclinical MRI.
PG333 Open waveguide loaded with a sandwich-like metamaterial for preclinical MRI.

The traveling-wave MRI (twMRI) approach using a parallel-plate waveguide (PPWG) enables imaging with a larger field of view without cutoff frequency limitations [1]. Previous studies have shown that this scheme yields images with reasonable uniformity but lower signal-to-noise ratio (SNR) values [2]. However, incorporating a metamaterial-loaded PPWG has been demonstrated to improve SNR [3]. In this work, we propose an alternative approach: a double-layer metamaterial-loaded PPWG filled with saline solution and integrated with a transceiver bio-inspired surface for preclinical imaging.

A bio-inspired surface coil was employed for RF signal transmission, as described in [1] (Fig. 1c). The metamaterial consisted of two arrays of 3 × 50 C-shaped units fabricated from copper sheets (thickness = 35 microm, s = 5.96 × 10⁷ S/m) laminated onto an FR4 dielectric substrate (e = 4.35, tan(d) = 0.008, thickness = 1 mm, dimensions = 500 mm × 40 mm), forming a sandwich-like structure (Fig. 1b). Each C-shaped unit had a diameter of 50 mm, a 3 mm gap, and a 3 mm strip width (Fig. 1a). Phantom imaging was conducted using the PPWG filled with saline solution, with the metamaterial structure inserted inside (Fig. 1d). The bio-inspired surface coil, positioned outside the waveguide and parallel to the plates, handled both RF transmission and reception. To validate this approach, images were acquired using a standard gradient-echo sequence with the following parameters: TE/TR = 4 ms/100 ms, FOV = 40 × 40 mm², matrix size = 256 × 256, flip angle = 45°, slice thickness = 1 mm, and NEX = 1. For comparison, additional phantom images were obtained using an in-house birdcage coil (length = 5 cm, diameter = 4 cm, 4 rungs). All experiments were performed on a 7T/30 cm Bruker scanner (Bruker BioSpin MRI GmbH, Germany).

Phantom images were acquired both with and without the metamaterial to validate the feasibility of this approach (Fig. 2c). Additional phantom images were obtained using a birdcage coil and the twMRI setup without the metamaterial (Fig. 2c and e, respectively). From the acquired images, SNR values and uniformity profiles were computed along the yellow line indicated in Fig. 2b (see Fig. 3a).

The measured SNR values were: Sandwich-metasurface: 30.4, twMRI (no metamaterial): 24.5, In-house birdcage coil (in-hBC): 32.42. The sandwich-metasurface imaging performance was comparable to that of the in-house birdcage coil—a significant result, given that remote MRI acquisition typically suffers from reduced image quality. While all uniformity profiles exhibited similar patterns, the metamaterial-enhanced setup demonstrated higher signal intensity than the standard twMRI approach. This confirms that even a non-tuned metamaterial provides a notable improvement over conventional remote imaging methods, aligning with prior findings at 3 T [4] and 15.2 T [1].

These experimental results demonstrate that a metamaterial-loaded PPWG filled with saline solution can produce high-SNR images using the tw MRI approach. Our findings show that this method outperforms conventional twMRI techniques at 7 T in a preclinical imaging setting, offering a promising alternative for high-quality remote MRI acquisition.
Sergio SOLIS-NAJERA, Jelena LAZOVIC, Saul RIVERA DE LA LUZ, Alfredo RODRIGUEZ (Mexico City, Mexico)
11:00 - 12:30 #45619 - PG334 Bio-Inspired Surface Coil with Integrated Hilbert Metasurface for Enhanced Preclinical MRI.
PG334 Bio-Inspired Surface Coil with Integrated Hilbert Metasurface for Enhanced Preclinical MRI.

Metamaterials have demonstrated the ability to enhance the performance of RF coils in clinical MRI [1]. Preclinical MRI also requires RF coils with enhanced performance, and metamaterials provide a promising alternative to achieve this goal [2-3]. We have previously reported the experimental results using a flexible metasurface wrapped around a phantom and bio-inspired surface coil [4]. In this paper, we developed a metasurface and bio-inspired coil as a single unit: a metasurface based on the Hilbert curve [5] and a bio-inspired coil [4] were integrated into a single unit for preclinical MRI applications at 7 Tesla.

The size of the metasurface must correspond to that of the bio-inspired coil and its resonant frequency. We employed the theoretical framework developed by Chen et al. [6] to calculate the frequency for the principal mode of the Hilbert metamaterial: fm=mc/2(2^N+1)a (1) where m represents the harmonic number, c is the speed of light, N is the order and a is the side length. Using eq. (1) with N = 4, m = 1 and a = 3 cm, we obtained the following resonant frequency, . The prototype was constructed using copper sheets (thickness = 35 microm and s = 5.96 x 10^7 S/m) laminated onto a nonconductive board (FR4: e = 4.35 and tan(d) = 0.008, thickness = 1 mm, 6.5 cm long and 3.5 cm wide). The bio-inspired coil was laminated onto one side of the substrate, while the Hilbert fractal curve was laminated to the opposite side. Tuning and matching capacitors (0–15 pF: Voltronics Co., Salisbury, MD, USA) were directly soldered onto the surface, incorporating six parallel ceramic capacitors (American Technical Ceramics, Huntington Station, NY, USA) to achieve a total capacitance of 27 pF, as illustrated in Fig. 1.a). The coil prototype was precisely matched and tuned to 50 Ω at a frequency of 299.471 MHz, corresponding to the proton frequency for 7 T. Notably, the metasurface was not tuned or matched using passive components, as its resonant frequency was sufficiently aligned with the experimental frequency required for these tests. Fig. 1 presents a photograph of both the coil prototype and the Hilbert metasurface. To assess the effectiveness of this new coil design, phantom images were captured using a standard gradient echo sequence, with parameters set to TE/TR = 4.39 ms/200 ms, FOV = 60 mm × 60 mm, matrix size = 128 × 128, flip angle = 30°, slice thickness = 1 mm, and NEX = 1. Additionally, phantom images were obtained using a bio-inspired coil of comparable dimensions without the metamaterial for comparative analysis. All MRI experiments were performed on a 7T/30 cm Bruker imager (Bruker BioSpin MRI, GmbH, Germany).

The resonant frequency of the Hilbert curve, calculated using Eq. (1), aligns closely with results reported by Motovilova and Huang [7], given similar dimensions and orders. It is important to note that in our case, the Hilbert curve metamaterial is not employed as a resonator, and no passive components were used for tuning or matching purposes. Instead, the geometrical characteristics and dimensions of the metamaterial determine the resonant frequency, making it suitable for preclinical applications at 7 Tesla. Figs. 2a) and b) display phantom images acquired with the Hilbert metasurface-integrated surface coil and the coil without the metasurface, both exhibiting excellent image quality. The signal-to-noise ratio (SNR) values were calculated from these images, resulting in SNRmeta+coil = 120 and SNRbiocoil = 80. This indicates an approximate 66% improvement in SNR for the metasurface-integrated coil. Additionally, a comparison of SNR versus depth was conducted experimentally using phantom images for both coil prototypes, as shown in Fig. 2c).

The Hilbert metasurface-integrated surface coil demonstrates a significant performance enhancement over the bio-inspired surface coil, particularly in terms of field uniformity, signal-to-noise ratio (SNR), and spatial selectivity. These improvements are attributed to the metasurface, which enable more efficient manipulation of the RF field distribution. These experimental results are consistent with previous data reported by our group [4], further validating the reliability and reproducibility of the metasurface-based design strategy in high-field MRI applications.

The experimental imaging results indicate that the Hilbert metasurface-integrated surface coil outperforms the bio-inspired surface coil. By incorporating a metamaterial into the surface coil, we can enhance its performance without the need for additional electronic components, thereby facilitating the development of innovative coil designs. Our findings demonstrate that integrating a metasurface can significantly improve coil performance for preclinical applications in high-field environments.
Sergio SOLIS-NAJERA, Edith TELLEZ, Saul RIVERA DE LA LUZ, Jelena LAZOVIC, Alfredo RODRIGUEZ (Mexico City, Mexico)
11:00 - 12:30 #47733 - PG335 Innovative coil with Remote Deployment and Decoupling for High-Resolution Cardiac MRI at 1.5T.
PG335 Innovative coil with Remote Deployment and Decoupling for High-Resolution Cardiac MRI at 1.5T.

Standard clinical MRI is outperformed by ultra-high-field MRI in terms of image signal-to-noise ratio (SNR). Bringing this level of quality into the clinical setting could enable more accurate pathology detection, earlier diagnosis, improved therapeutic monitoring and a deeper understanding of cardiac disease mechanisms. Our goal is to achieve such image quality in clinical MRI by increasing spatial resolution, which requires a higher SNR. The performance of the receive coil is a critical determinant of SNR. Conventional surface coils often provide insufficient SNR in standard clinical MRI due to their distance from the heart and relatively large size. The design of an intracardiac receive coil that can be deployed within an intravascular catheter and achieve submillimetre resolution is presented in this study.

The aim of this study is to develop a cardiac imaging catheter coil for use in 1.5T MRI scans, either intracavitary or transesophageal (fig1). Receive-only coils were developed and connected to a dedicated interface. To maximise SNR, the loop diameter was set at 2 cm. A decoupling method developed in our lab was used to minimise nearby electronic components and reduce RF-induced heating. Miniaturised parts included 0505-sized non-magnetic capacitors (Passive Plus, USA) and 1 mm coaxial cables (ES-France), selected based on electromagnetic simulations for signal optimisation, using Advanced Design System (ADS, Keysight Technologies, USA) and QucsStudio (RAFIsoft, Germany). To suit intracardiac and intravascular navigation, the coil was made mechanically robust and flexible to withstand cardiac motion and anatomy. It was built on a flexible polyimide PCB and bonded to a nitinol support for shape memory. Nitinol is MRI-compatible, and the adhesive was LOCTITE 4305. The total catheter length was ~100 cm. The shaft used MRI-compatible materials: • Outer shaft: PEBAX 63D, 3.6 mm outer diameter, with embedded MRI-safe LCP (Liquid Crystal Polymer) braid, previously tested. • Inner shaft: PEBAX 72D with embedded MRI-compatible LCP braid. The catheter coil was tested in vitro for MRI performance on a 1.5T scanner (Aera, Siemens Healthineers, Germany). Two experimental setups were evaluated: immersion in a saline-filled bucket (fig2.A), and insertion into a half-heart phantom with saline and 1% agarose (fig2.B). Safety testing used PRFS-based MR thermometry to assess RF-induced heating [1]. Finally, high-resolution ex vivo images were acquired in a sheep heart to validate imaging performance (fig3).

The catheter coil demonstrated excellent performance, with a 13-fold higher SNR within a 2 cm diameter region compared to conventional coils. Similar results were observed in the half-heart phantom filled with agarose gel. The remote decoupling strategy proved highly effective, ensuring efficient isolation of the coil element without physical intervention. The deployment mechanism functioned reliably, enabling precise and repeatable positioning. Ex vivo acquisitions (fig3) also yielded very high SNR values with an isotropic spatial resolution of 500 µm³, approaching the image quality reported in [2] using a non-deployable surface coil of identical diameter. MR thermometry confirmed safe RF performance, with no noticeable temperature increases on or around the coil.

These results demonstrate the feasibility and performance of a flexible miniature catheter coil designed for intracardiac or transesophageal imaging at 1.5T. The high-resolution ex vivo images and high SNR obtained in both phantom and biological tissue confirm the effectiveness of the coil design for localized signal reception in deep anatomical regions. The remote decoupling strategy was effective in significantly reducing the number of electronic components in the imaging zone, thereby minimising the risk of RF heating. This was confirmed by MR thermometry, which showed no measurable temperature increase, indicating that the device can operate safely under MRI conditions. The combination of flexible PCB and nitinol provided both mechanical flexibility and shape memory, allowing the coil to adapt to dynamic cardiac environments while maintaining MRI compatibility. Further improvement of the device may include adding an inflatable balloon surrounding the coil at the tip of the catheter to facilitate coil deployment in constrained regions. Such a system would allow controlled mechanical expansion of the coil, ensuring proper deployment and contact with surrounding tissues, even in tight or stiff anatomical areas. This enhancement could further improve image quality and reproducibility in future in vivo applications.

This work demonstrates the successful development of a compact, remotely deployable catheter coil capable of high-resolution structural imaging at 1.5T. The next steps to finalize the prototype include integrating cable traps to suppress common mode currents, addressing occasional imaging artifacts, and advancing toward in vivo imaging studies.
Dahmane BOUDRIES (Bordeaux), Sébastien ESTORT, Gilmus Valernst MARTIAL, Manon DESCLIDES, Sylvain CAUBET, Simon LAMBERT, Marie POIRIER QUINOT, Bruno QUESSON
11:00 - 12:30 #47683 - PG336 Simultaneous EEG-fMRI at 7 T: Optimisation of artifact detection loops to mitigate Radio Frequency field interference.
PG336 Simultaneous EEG-fMRI at 7 T: Optimisation of artifact detection loops to mitigate Radio Frequency field interference.

Simultaneous EEG-fMRI at ultra-high field (e.g. 7T) offers high temporal (sub-millisecond) and spatial (sub-millimeter) resolution, enabling non-invasive exploration of human brain function at the meso-scale. However, EEG-fMRI at 7T poses significant challenges, particularly EEG signal corruption due to the MR environment. One major issue is the ballistocardiogram (BCG) artifact on the EEG signal, mainly caused by heartbeat-induced movement in the static magnetic field. One technique to reduce BCG involves adding artifact detection loops (ADLs) on top the EEG signal detection electrode cap to directly record the BCG artifact from the EEG signal[1]. While this design was successfully implemented on lower magnetic fields, their design has not been optimised for 7T and, owing to the reduced RF wavelength, may cause significant RF field disruption that can affect image quality and subject safety. Using electromagnetic field simulations, this study examines how RF fields are pertubed by ADLs, and how this is altered by ADL size and material type.

Electromagnetic field simulations were performed using a finite-difference time-domain simulation software (Sim4life 8.0,ZMT,Switzerland). A 16-leg high-pass shielded birdcage coil (diameter=305mm, length=210mm) driven in circularly polarized mode was simulated, and tuned and matched using Optenni (Optenni Lab, Finland). This coil was loaded with a digital model of a phantom (SAM phantom,ϵ_R=45.3,α:0.87S/m,ZMT,Switzerland). A model of 4 ADLs was built based on a 7T prototype cap (BrainCap-MR7FLEX, Brain Products GmbH), resulting in wire lengths of approximately 28cm corresponding to the open loop area. These wires were then transformed to obtain lengths corresponding to 50%, 60%, 70%, 80%, 100% and 120% of the open loop area. Simulations for all wire lengths were conducted for carbon wire (CW)(ϵ_R=5,α=62695S/m) and resistive polymer (ϵ_R=5,σ=5.556S/m). Loops were projected onto the surface of the phantom and displaced 7mm away from the surface in both x and y directions to maintain constant spatial relations between the loops and phantom. The cable tree, where the wires from the loops aggregate and exit the RF coil was modelled as carbon wire and maintained constant for all simulations. Figure 1(a) depicts the simulation model. A simulation with no loops (just phantom and RF coil) was run to establish the unperturbed B1+ and SAR values. Simulated B1+ field maps and 10g mass average SAR (SAR10g) maps were normalised to 1W total input power. These were masked to the region inside the phantom, interpolated at 1mm-isotropic resolution, and exported to Matlab (R2024a,The Mathworks,Natick,MA). Maximum Intensity Projection (MIP) B1+ and SAR maps were computed in all 3 directions for each case. From each SAR10g MIP map, the MIP map of the phantom only case was subtracted to obtain a MIP difference map, to understand the full extent of the effects of the loops on SAR10g.

Figure 1(b) presents the B1+ MIP maps at each loop length for carbon wire and resistive polymer loops. In the carbon wire case, interactions with the B1+ field generally increase with increasing loop length, with maxima seen at 70–80% of the original length. In the carbon wire case, interactions with the B1+ field increased with loop length, peaking at 70-80% of the original length, before decreasing again. At these lengths, the wire creating the open loop area was approximately a quarter of the RF wavelength in air at 7T, matching resonance conditions previously reported for EEG cable bundles.[2] In contrast, minimal B1+ field perturbations were observed with higher resistance polymer ADLs, irrespective of loop length. Figure 2 and 3 show the SAR10g MIP and MIP difference maps, indicating similar trends to the B1+ maps. In the carbon wire case, resonance effects at 70-80% loop lengths led to substantial increases in SAR, whereas no such increase was seen in the polymer case due to the resistive properties of this material. As depicted in Figure 4, SAR10g values at these lengths were increased by 21-26% compared to the phantom-only case. For the polymer, SAR10g remained stable across all loop sizes, showing no resonance effects.

Carbon wire ADLs were more susceptible to RF interactions than resistive polymer ADLs. Resonance effects were observed in the carbon wire loops at lengths corresponding to a quarter of the RF wavelength at 7T, consistent with previous findings in EEG cable bundles.[2] The polymer material, with its lower conductivity, exhibited minimal RF interaction, regardless of loop size.

These results suggest that ADLs made from moderately resistive materials (like carbon wire) should avoid resonant lengths to limit RF field interactions. In contrast, highly resistive loops (e.g. polymer) do not exhibit significant RF interference, regardless of size. Optimizing ADLs for EEG artifact suppression while maintaining MRI data quality and safety will require considering these material and loop size effects.
Rebecca MEAGHER (London, United Kingdom), David W. CARMICHAEL, Tracy WARBRICK, Ozlem IPEK
11:00 - 12:30 #46457 - PG337 Assessment of an optical accelerometer for motion correction in supine breast MRI.
PG337 Assessment of an optical accelerometer for motion correction in supine breast MRI.

Breast MRI is typically performed in the prone position. Supine breast MRI offers better anatomical alignment with other imaging modalities and surgical planning, but compromised by respiratory motion artifacts. We previously showed that GRICS correction with a respiratory belt improves supine breast MRI [1]. With BraCoil [2], a flexible supine breast coil, accelerometers mounted on its surface outperformed the belt - likely due to better correlation with chest motion [3]. Despite its flexibility, BraCoil may still dampen motion signals. Therefore, direct chest placement of sensors is expected to improve signal fidelity. However, MEMS-based accelerometers require batteries, which introduce susceptibility artifacts and must be positioned away from the tissue of interest. In this study, we assess the MRI compatibility of an optical accelerometer and demonstrate its usability for respiratory motion correction in supine breast MRI.

The evaluated sensor was the optical accelerometer FOSA 3660 (Optoacoustics Ltd, Or Yehuda, Israel). The MRI was Siemens Prisma 3T. Testing included safety, interference, and motion correction performance. Safety tests assessed RF-induced heating and gradient-induced vibrations. i) RF heating: The sensor was installed on a phantom (Fig. 1a). Four optical temperature probes were connected to a Reflex conditioner (Neoptix Canada LP). Temperature data were recorded in 3 phases: pre-sequence (20 min), during an MRI sequence (qTSE, RF Level 1, 15 min), and post-sequence (5 min). To account for potential thermalization, the pre-sequence data were fitted using Newton’s law of cooling. The difference between the predicted temperature and the actual post-sequence temperature was then calculated. ii) Vibrations: The accelerometer was mounted on a foam support in the MRI bore (Fig. 1c). Vibrations perpendicular to its main surface were measured using a laser vibrometer in combination with a custom fixture equipped with a prism. 8 EPI sequences were applied at various frequencies [4]. The average root mean square (RMS) displacement of the accelerometer was compared to that of a plastic block of similar shape and size. Interference testing addressed susceptibility artifacts and RF noise emissions. For the susceptibility artifacts, a GRE sequence was applied (TR = 500 ms and TE = 26.6 ms). The artifacts were compared to those induced by an MRI-compatible accelerometer [5] with a non-magnetic battery PGEB-NM651825-PCB (PowerStream, Toronto, Canada). RF noise emission was assessed using a Siemens diagnostic tool that sampled the RF spectrum received by the MRI body coil over the resonance frequency range of 123.2 ± 0.5 MHz, without RF excitation. To evaluate motion correction performance for supine breast MRI, the sensor was positioned on the chest of a female volunteer. A T2w TSE sequence (60 slices) was run twice: once during forced, hard chest breathing, and once during abdominal breathing. Sensor signals recorded during the hard breathing were low-pass filtered (0.3 Hz) and used for the GRICS motion correction algorithm [6]. Resulting image quality was evaluated using the sharpness index [7].

Fig. 1b shows the results of the RF heating test. The probes started slightly warmer than the MRI room (by 0.1 to 1.2 °C). The estimated temperature increase of the far end of the sensor box (“side”) during the sequence was about 0.1°C and smaller for other parts. Vibration analysis (Fig. 1d) showed a mean RMS displacement of 0.26 ± 0.13 µm, similar to that of the plastic block (0.24 ± 0.06 µm). As shown in Fig. 2, the susceptibility artifact caused by the optical sensor was approximately 4 mm deep, compared to 32 mm artifact from a battery-powered accelerometer. RF spectra acquired with and without the sensor showed no detectable difference, confirming the absence of emitted RF noise. Fig. 3a displays respiratory signals recorded during the first TSE sequence, and Fig. 3b shows the resulting images. The motion correction improved image sharpness by 21.5 ± 13.1% (p < 0.001).

The RF heating tests confirmed that the sensor is safe. Even assuming an initial body temperature (37 °C), it remained well below the 43 °C safety threshold (IEC 60601-1). It exhibited no significant induced vibrations across all tested EPI sequences, reducing the likelihood of patient discomfort, mechanical failure or added noise during acquisition. Minor susceptibility artifacts were observed. Nonetheless, the artifact size was substantially smaller than that of a battery-powered accelerometer and would likely be even smaller under less extreme imaging parameters. Finally, the sensor was successfully applied for the GRICS motion correction for supine breast MRI. Validation on more volunteers and comparisons with other sensors are needed to further assess its performance.

The optical accelerometer is safe for direct chest placement in the MRI environment, introduces minimal artifacts, and can be effectively used for GRICS motion correction.
Karyna ISAIEVA (Nancy), Diego GONZÁLEZ SOTO, Cédric LAURENT, Pauline FERRY, Freddy ODILLE, Jacques FELBLINGER
11:00 - 12:30 #47338 - PG338 Enabling Gradient Arrays Through Digital Feedback Control.
PG338 Enabling Gradient Arrays Through Digital Feedback Control.

Gradient-array coils add extra degrees of freedom over conventional gradient systems. They have already enabled simultaneous multi-slice (SMS) excitation without SAR penalty [1], region-of-interest (ROI) gradient focusing for efficiency gains [2], and lower electric-field exposure that lifts peripheral-nerve-stimulation (PNS) limits [3]. Still, developing a practical and scalable gradient power amplifier (GPA) system has been challenging. Conventional gradient amplifiers are large, expensive, and difficult to scale beyond a small number of channels. As the number of channels increases, interactions between coils become more significant, introducing coupling effects that complicate control and require more advanced strategies. Earlier work leaned on feedforward methods that compensated for coupling using known coil models, but feedforward control strongly depends on accurate modeling, making it sensitive to model inaccuracies [4,5]. Feedback control, in contrast, directly addresses coupling effects, though it traditionally relies on costly fluxgate sensors. A low-cost analog controller was also evaluated [6], but its manual tuning becomes difficult as channel count increases, leading us to focus on digital feedback in this work. In the current implementation, we use fluxgate sensors, though the system is designed to allow future use of cheaper current sensors. We present a modular gradient controller using high-bandwidth digital feedback. With GaN transistors and continuous-time delta-sigma ADCs, the system drives coupled coils with stable current control. Our earlier test setups involved loosely connected boards and wiring, making integration difficult and raising concerns about robustness. By adopting the Eurocard format, we consolidate the system into a single enclosure with standard mechanical and electrical interfaces, resulting in a cleaner, more maintainable design suited for practical deployment and further development.

Each controller follows the IEEE 1101.1 Eurocard standard. A 3U sub-rack holds twelve modules, allowing up to 168 channels per rack. Our four-channel module includes an Artix-7 FPGA running real-time PID control. Currents are digitized by a 24-bit, 1.5 MSPS AD4134 ADC, which removes the need for anti-alias filters and keeps latency under 10 µs. Feedback is provided by LEM fluxgate sensors. Amplifiers, still under development, were emulated using external GaN-based PWM setups at 666 kHz. Center-aligned PWM doubles the control bandwidth, helping avoid output filters and reducing complexity. A plastic optical fiber (POF) board links the controller to an AMD Kintex Ultrascale FPGA acting as the MRI spectrometer, which parses Pulseq data and streams gradient waveforms optically. This minimizes EMI and is suitable for future operation inside the scanner room. Validation used four z-elements of a 40-channel custom gradient coil in a double Maxwell configuration. This setup introduces mutual coupling, allowing the controller to be tested in conditions relevant to array systems.

The digital feedback controller successfully drove four mutually coupled gradient channels, maintaining stable and independent currents. A spin-echo MRI scan of a tomato was performed using our system for the readout gradient, while phase encoding and slice selection were handled by the scanner’s gradients. The resulting image and current measurements confirm that the controller operates reliably under coupling. At higher gradient currents, we observed image noise that likely originated from EMI at the Larmor frequency, probably caused by PWM harmonics. Twisted shielded cables and amplifier shielding significantly reduced the noise, confirming its electromagnetic origin. These results underline the importance of EMI mitigation, especially in systems without conventional output filtering.

The controller captures both current and drive signals at high bandwidth, making it possible to estimate the coil and amplifier response from data. The estimated model can be fed forward while feedback corrects the remaining error, allowing predictive or adaptive control. This may let the system work with cheaper sensors instead of fluxgates, without losing stability or tracking.

We built a modular digital feedback controller and tested it on four mutually coupled coils. The system maintained stable currents and produced a clean spin-echo image using the array for readout. The design supports future expansion to larger arrays and offers a base for exploring model-based control and alternative sensor types.
Ege AYDIN (Ankara, Turkey), Mehmet Emin ÖZTÜRK, Manouchehr TAKRIMI, Ergin ATALAR
11:00 - 12:30 #47298 - PG339 Field-based spatial self-registration of multi-coil hardware for B0 field control.
PG339 Field-based spatial self-registration of multi-coil hardware for B0 field control.

Acquisition of robust Magnetic Resonance Imaging (MRI) data relies on a homogeneous B0 field, but magnetic susceptibility differences in vivo can create B0 distortions that lead to artifacts and signal dropout [1–3]. Multi-coil (MC) shimming systems use an array of individually-driven generic coils to homogenize the B0 field, and have been shown to outperform low-order spherical harmonic (SH) shimming in the brain [4–8]. Most MC setups are designed as temporary inserts for existing scanners, with high-quality basis maps [5, 7–9] (maps of the field produced per shim setting for each coil) acquired by a calibration process requiring multiple hours of scan and analysis time. Shim fields are calculated as a combination of calibrated basis maps for subsequent experiments. For an applied shim field to match the calculated field, it is therefore essential to either position the hardware in precisely the same location as in calibration or have knowledge of the exact position relative to the calibration scenario [5]. Degradations in B0 field control are observed even for millimeter-scale displacements (Figure 1). Our purpose is to reliably detect misplaced hardware using only a field map acquisition, ensuring optimal performance of MC inserts.

A hardware self-registration algorithm [10] in MATLAB (Mathworks, Inc., Natick, MA) co-registers two 3D field maps: an Expected Field, which is a field map acquired at the Day 0 (i.e. calibration) position, and a Measured Field, which is the same field shape measured at Day N (Figure 2). The Expected Field is mathematically created by a combination of the calibration maps, and the Measured Field is measured after the hardware is re-placed in the scanner. The algorithm calculates the x, y, and z-translation and z-rotation needed to align the two fields in an eroded ROI through co-registration. Secondary rotations about the x- and y-axes can be considered small in practice and were, thus, not considered in this proof-of-concept. Three Expected Field shapes were tested: the shape of a selected single MC element as a baseline, a Four Lobe field generated by only one ring of coils, and a GA Field optimized by a genetic algorithm (Figure 4). The latter two were selected for further validation. A MC array comprising 6 rows of 8 coils (diameter 70 mm, 100 turns) was arranged on a cylindrical former (OD 20.32 cm) to produce B0 field distributions (Figure 3). Monte Carlo simulations of 5,000 recoveries of rigid transformations, were used to calculate the average norm error of localization accuracy at ten SNR levels. Simulations were done for Simulated Basis Maps – the maps generated from Biot-Savart simulations of the hardware – as well as the calibrated Experimental Basis Maps for the hardware. The self-registration procedure was tested in the scanner by physically shifting the MC hardware a known distance. Scanner validation was performed at seven SNR levels for one hardware position, and then at one SNR level (19±1) for ten random hardware positions.

The established framework enabled accurate hardware localization through application of unique field shapes (Figure 4). Localization accuracy with well below 1 mm and 1 degree errors was achieved irrespective of the applied test field shape with SNR of at least 10. In scanner validation, both Expected Fields had an average translation error below 1 mm for SNR levels above 4.6, and an average rotation error below 1 degree for SNR levels above 2.8 and 4.6 for the GA and Four Lobe fields, respectively. For all SNR levels, the Experimental Basis Maps had higher errors than Simulated Basis Maps. Both Expected Fields were able to recover all 10 additional controlled hardware shifts within a norm translation error of under 0.44 mm, with an average error of 0.30 mm and 0.20 mm for the Four Lobe and GA Fields, respectively. All rotation errors were recovered within 0.17 degrees, with average errors of 0.13 and 0.11 for the Four Lobe and GA Fields.

A field shape optimized with a genetic algorithm allows for an average localization accuracy of 0.2 mm and 0.11 degrees from a sub-1-minute B0 mapping experiment (SNR 20), allowing for improvement of B0 control and shimming potential of hardware inserts. Simulated, Experimental, and Measured experiments showed excellent agreement across SNR levels. Both Expected Fields achieved error below 0.5 mm and 0.5 degrees for the 10 transformations – a reasonable threshold for success given the degradation curve in Figure 1 – but the GA Field had an overall lower error. In the future, we plan to include x- and y-rotations, which cannot be accounted for by rigid transformations alone and require qualitative updates of the basis shapes, and to test the self-registration method in vivo.

Here we have presented a method for field map-based hardware self-registration for MC inserts. This addresses the requirement of precise repositioning of MC hardware inserts, allowing for excellent shim capabilities of misplaced hardware.
Isabelle ZINGHINI (Vienna, Austria), Ian MACLEOD, Carlotta IANNIELLO, Sebastian THEILENBERG, Christoph JUCHEM
11:00 - 12:30 #47811 - PG340 Understanding patient grounding with experiments on a custom phantom at 55 mT.
PG340 Understanding patient grounding with experiments on a custom phantom at 55 mT.

Advancements in Very-Low Field (VLF) MRI systems have reduced the complexity of the installation, enabling the mobility of MRI equipments. However, this comes at the cost of lower Signal-to-Noise Ratio (SNR). At 50 mT and without a Faraday cage, the human body acts as an antenna coupling external electromagnetic interference (EMI) into the imaging region [2]. Recent low-field MR literature reported noise reduction via coil optimization, EMI detection and subtraction using multiple external coils, and passive methods like grounding the patient via conductive cloths or pads [1]. Software-based deep-learning approaches have also been explored to suppress EMI [3]. In this study, we examined the impact of patient grounding on EMI coupling and identify some of the factors influencing its effectiveness in VLF MRI.

We hypothesized that patient grounding can be optimized by understanding its dependencies. A custom cylindrical phantom was constructed to replicate human electrical properties [4]. The phantom consisted of a 160-cm long, 12-cm diameter polyvinyl chloride (PVC) tube, filled with water or saline (9 g/L [5]). Two non-ferromagnetic brass screws were inserted at different positions along the tube, penetrating the PVC wall to make contact with the saline. The phantom was placed in a VLF MRI system. Noise measurements were performed using a solenoid transmit/receive coil and a Magritek Kea2 spectrometer with its «MonitorNoise» sequence. We assessed grounding effectiveness as a function of: conductivity of the medium, distance from the imaging region (grounding position) and the presence/absence of direct electrical contact. Noise was repeatedly recorded during 60 seconds in 50-ms time windows (4 averages). Signals were concatenated, and the standard deviation (SD) was computed for comparison. SDs were first compared w/o grounding using grouding point 1 with both water and saline to isolate conductivity effects. Two main experimental conditions were then tested using saline only (Figure 1): 1.Grounding position: screws 20 cm apart, both 50 cm from the imaging region: Config. 1: grouding point 1 only, Config. 2: grouding point 2 only, Config. 3: both grouding points simultaneously; 2.Insulation effects: a 110x20 cm conductive belt (σ=3,3.10^4 S⁄m) was wrapped around the tube and grounded to evaluate the effect of capacitive coupling (PVC as insulation): Config. A: position A, Config. B: position B, Config. C: spiral wrap (maximized contact area).

Noise SDs were computed from the real part of the signal. In the conductivity comparison, the saline-filled tube showed higher baseline noise than water, but grounding significantly dropped it, yielding a lower final level (Figure 2). As shown in Figure 3 (a), conductive grounding reduced the noise SD: grouding point 1 reduced SD by 93.7%, versus 36.3% for grouding point 2. Simultaneous grounding through both grouding points yielded a 98.3% reduction. Capacitive coupling results (Figure 3 (b)) showed 79.4% reduction with the belt in position A, 95.2% in B, and 98.5% when spirally wrapped (C).

The comparison of water vs saline filling confirms that when the entire volume is conductive, grounding is more effective, likely due to improved current flow and a more uniform electric potential distribution within the phantom. Both conductive and capacitive grounding can significantly reduce EMI noise in an ULF MRI setup. Using conductive grounding points resulted in the highest noise suppression, with simultaneous grounding at multiple points providing the greatest improvement. Capacitive coupling via belts was most effective when spirally wrapped. Direct contact grounding showed better efficiency when the grounding points were closer to the imaging region, likely due to the interception of external EMI effects from affecting the remaining exposed part. Conversely, capacitive coupling to ground showed better performance at longer distance from the bore and with larger contact areas.

These findings suggest that both grounding strategies can be applied to reduce noise in practical MRI environments, with capacitive methods showing promise for future clinical use due to better patient comfort. Future work will map location, contact, and area dependencies for both methods to maximize noise reduction while maintaining ease of implementation in clinical or portable systems. Acknowledgements This work received support from the french government under the France 2030 investment plan and French “Investissements d’Avenir” programme, as part of the Initiative d’Excellence d’Aix-Marseille Université, A*MIDEX : AMX-2023-CI-01, AMX-23-CPJ-10 and AMX-23-EQ-FO-009, as well as ANRT CIFRE 2024/1145.
Jana EL ZAHER (Marseille), Tangi ROUSSEL, Fouad FEZARI, Djamel BERRAHOU, Amira BERGÉ-LAVAL, Redha ABDEDDAIM, Marc DUBOIS, Frank KOBER
11:00 - 12:30 #47931 - PG341 A magnetic field camera to validate magnetic gradients waveforms: a proof-of concept at 0.55 T.
PG341 A magnetic field camera to validate magnetic gradients waveforms: a proof-of concept at 0.55 T.

Magnetic resonance imaging of the lung is a challenging imaging modality given the low proton density, and short T2* relaxation times. The short T2* can be compensated by using ultra-short echo time (UTE) sequences [1]. A UTE sequence with a 3D center-out radial trajectories has been developed to capture 4D (3D+time) images of the lung [2]. One of the challenges of this sequence is the ultra-short echo time and the radial center-out trajectory making this sequence highly demanding for gradient performance. These techniques often rely on non cartesian trajectories requiring a more precise gradient control where any difference between command and output can result in gradient delay artefacts (Fig.1a) and in a lack of accuracy in the derivation of the navigator. Gradient distortions are caused by non-linearities in amplifiers and variations in coil manufacturing. To tackle these issues, current advanced methods use MRI sequences along with calibrated passive phantoms [3]. Alternatively, we suggest using high-speed magnetic field cameras (MFCs) paired with algorithms that can determine the necessary adjustments from measurements to modify MR sequences and correct gradient distortions. MFCs are arrays of magnetic sensors that allow understanding complex magnetic fields by mapping the complete magnetic field vectors over a volume. MRI poses a significant challenge for MFCs due to the high-speed magnetic fields and large volumes involved. As a result, the complexity of the reading electronics increases with higher sampling rates and a larger number of sensors. Commercial MFCs [4] that utilize NMR sensors are designed to map B0 but do not provide complete field vector information. Currently, Hall-effect sensors are the most suitable type of magnetometer for MR gradients.

The magnetic camera used in this work have been presented in [5]. The MFC has an array of 7x7 integrated 3D Hall sensors (TMAG5273) (Fig.1b), covering a total area of 31.36 cm². These sensors are set to their maximum conversion rate and dynamic range of ± 266 mT. In this setup, the sensors demonstrate an rms noise of 140 µT, translating to a magnetic field resolution of 1.4 μT/√Hz. All sensors in the array are read synchronously in parallel at 7 kHz. Further details about our MFC can be found in [5]. It was then placed at the entrance to a Siemens Magnetom Free.Max (0.55 T) tunnel to characterize the gradients waveforms of a custom UTE sequence with specific a trajectory designed to enable concurrent field monitoring, sampling 25 temporal points per spoke via a field camera.

Fig. 2 illustrates both the predicted gradient trajectories and the signals captured by the 49 sensors of our MFC. Given that our sensor's range is limited to 266 mT, the gradients along the B0 axis (Z-axis) are masked for our camera. Consequently, the subsequent figures focus solely on the X and Y axes. Fig. 3 presents a direct comparison between the results obtained by the central sensor of the camera and the planned gradient trajectories for the X and Y axes. To facilitate comparison, all signals are normalized between -1 and 1. This figure suggests that the measurements taken with the MFC proceeded as intended, as the measured shapes closely resemble the expected ones. The blue areas, which do not correlate with an orange area, correspond to the rewinding gradients applied by the scanner. Additionally, due to the MFC not being perfectly aligned within the MRI, each axis of the MFC detected contributions from gradients other than the “aligned” one. This misalignment is particularly noticeable in the center of the top left graph in Fig. 3. Finally, Fig. 4 provides a detailed view of the measurement of a single trapezoid (comprising 25 points acquired by the MFC) on the X-axis, in relation to the expected shape.

Precisely measuring gradient errors could facilitate the implementation of impulse response function-based correction algorithms [6]. The results obtained with the MFC are promising in this regard but require further refinement of the experimental protocol and electronic development before they can be fully used for correcting sequences. For instance, enhancing the protocol will necessitate improved synchronization between the MFC and the MRI console. Precise positioning of the camera will also ensure cleaner signals. Enhancing the electronics to improve the camera's speed and precision will enable the collection of improved data. Indeed, the sequence used in this work had to be slightly slowed down to be measurable with the MFC. In the future, it will be essential to characterize the full-speed sequences directly.

We successfully demonstrated in this work the ability of our MFC to measure gradients from a UTE sequence with a 3D center-out radial trajectory. The results obtained pave the way for the adjustment of such a sequence to improve the quality of the 4D images of the lung that it enables.
Thomas QUIRIN, Timothée CAUSSIN, Alexiane PASQUIER, Hugo NICOLAS, Rose-Marie DUBUISSON, Marie POIRIER-QUINOT, Joris PASCAL (Muttenz, Switzerland)
11:00 - 12:30 #45668 - PG342 Technological Innovation in MR-Guided Radiotherapy: Clinical Impact and Dosimetric Considerations of Elekta Unity MR-Linac.
PG342 Technological Innovation in MR-Guided Radiotherapy: Clinical Impact and Dosimetric Considerations of Elekta Unity MR-Linac.

Magnetic Resonance-guided radiotherapy (MRgRT) has emerged as a significant advancement in the field of radiation oncology. The Elekta Unity MR-Linac represents a fusion of high-field diagnostic MRI with a linear accelerator, enabling real-time imaging during treatment and the possibility of daily Adaptive Radiotherapy (ART). This integration allows personalized adaptation of the treatment plan to anatomical changes, improving target precision, reducing exposure to healthy tissues, and enabling safe dose escalation. This study explores the impact of Elekta Unity on treatment workflow, dosimetry in magnetic fields, and the application of real-time motion management techniques.

The Elekta Unity MR-Linac combines 1.5 Tesla MRI with a 7 MV linear accelerator. Its capability to perform daily ART includes two main workflows: "Adapt to Position" (ATP) and "Adapt to Shape" (ATS). ATP compensates for inter-fractional translational setup errors, while ATS accounts for complex changes including rotations and deformations. Treatment planning involves Magnetic Resonance Imaging (MRI), Computed Tomography (CT) for electron density mapping, and synthetic CT generation. The Particle Transport Algorithm (PTA) within the treatment planning system (TPS) models the dosimetric perturbations induced by the magnetic field on secondary electrons. To counteract these effects, optimized beam configurations and IMRT techniques with multiple fields are applied. The study further investigates the Electron Return Effect (ERE) at tissue-air interfaces, the asymmetric dose distribution, and the implications on buildup regions. Comprehensive Motion Management (CMM) is employed to monitor intra-fractional target motion in real time, using non-invasive, non-surrogate-based tracking. The CMM system ensures beam delivery only when the target is within a predefined gating envelope.

Elekta Unity significantly improves soft-tissue visualization, enabling more precise identification of tumor boundaries compared to CBCT. MRI sequences such as T2-weighted, T1-weighted, and FLAIR can be acquired in under four minutes, streamlining the adaptive workflow. Dosimetric analysis revealed that magnetic fields induce a reduction in the electron path radius, modifying dose distribution patterns, especially at heterogeneities like tissue-air interfaces. Dose perturbations include an increased surface dose and asymmetric penumbra. These effects are mitigated by employing multiple beam directions in IMRT planning. Adaptive planning via weight and shape optimization (Method E) allows for complete fluence re-optimization and re-segmentation, ensuring precise dose delivery despite anatomical variations. CMM enables the detection of target movements such as respiratory motion, sudden shifts, or patient non-cooperation. Clinical applications have shown its effectiveness in various treatment scenarios including SBRT for liver and lung metastases, prostate cancer, and non-cooperative patients. The system automatically interrupts radiation delivery when the target deviates from the planned position, resuming treatment once alignment is restored.

MR-guided ART represents a paradigm shift from static to dynamic treatment approaches. Daily plan adaptation allows for margin reduction and dose escalation with reduced toxicity. However, integrating MRI into the radiotherapy workflow introduces new complexities, including longer session times and susceptibility to intra-fraction motion. The magnetic field's impact on electron trajectories must be considered during planning, especially near inhomogeneities. Elekta Unity addresses these challenges by combining real-time imaging, accurate dose calculation via PTA, and motion management through CMM. The device demonstrates how MRgRT can be safely and effectively integrated into routine clinical practice, offering high precision even in complex anatomical regions.

Elekta Unity enables a new standard in personalized, adaptive radiotherapy through the integration of high-quality MRI with linear accelerator technology. The system improves tumor visualization, compensates for anatomical changes, and mitigates motion-related uncertainties with real-time monitoring. Although the adaptive workflow is more time-consuming, the benefits in terms of precision, safety, and patient tolerance are significant. Future developments in automation and motion prediction will further streamline MRgRT, consolidating its role in advanced oncologic treatments.
Antonio DE SIMONE (Verona, Italy)
11:00 - 12:30 #47863 - PG344 Acquisition and denoising of electromyographic data in an MRI environment.
PG344 Acquisition and denoising of electromyographic data in an MRI environment.

We present the development of an instrumental and software solution for the acquisition and denoising of electromyography (EMG) signals during functional MRI (fMRI) data recordings. This solution is based on a dedicated acquisition channel optimized to isolate the considerable inductive noise associated with the commutation of magnetic field gradients. It is completed by a denoising tool for evaluating and subtracting this inductive artifact.

Our solution is to design a DAQ channel perfectly synchronized with the MRI system. This DAQ channel includes BIOPAC MRI-compatible electrodes and cables, two instrumentation amplifiers and a National Instruments NI-CompactDAQ 9178 box fitted with NI-9215 (16-bit analog acquisition) and NI-9401 (digital I/O & synchronization) modules. We have checked that the hardware components do not produce any RF artifacts on the MRI images. Acquisition is controlled by a dedicated software developed under the LabVIEW® environment using the DAQmx driver. This software ensures hardware retriggering on each TR, and the generation for each of these volumes (TR) of its own acquisition clock, enabling the acquisition of a train of samples for the duration of the TR. Each signal sample is thus acquired at exactly the same time as the corresponding sample from the previous TR. Average noise is thus calculated on the basis of perfectly synchronous trains (globally over the entire run or over a sliding time window). The average noise is then subtracted from the initial signal, and the resulting trains are concatenated to reconstruct the signal. Resynchronization at each TR guarantees the absence of phase-shift noise (hard to filter) between all these TRs.

The quality and relevance of the EMG signals was demonstrated by implementing a Go/NoGo task using response buttons equipped with isometric FSR pressure sensors, enabling the detection of very low pressures below the button release threshold. We showed the evidence of the correlation between the FSR sensor signals and the EMG signal, even in the absence of button switching.

The acquisition of EMG signals is very informative. For example, these signals can be used to accurately determine the onset of a motor response, before it is translated into movement or whether the response is inhibited and therefore undetectable using conventional tools (force transducers, response buttons, etc.). This methods allowed to implement new features in fMRI analysis in subtile motor tasks

Our solution solves the problem of cleaning up the inductive artifact by developing a specific hardware chain that isolates the induction noise from its source. The results are highly promising and open up interesting prospects. The prospects that are opening up concern both the equipment, with optimized amplifiers or electrodes adapted to the muscles concerned, and the acquisition methods themselves: we could envisage real-time acquisition/de-noising using, for example, an on-board system that would perform on-line cleaning, as exists in audio, for example.
Bruno NAZARIAN (Marseille), Franck VIDAL, Julien SEIN, Marion ROYER D'HALLUIN, Laure SPEISER, Jennifer T. COULL, Jean-Luc ANTON
11:00 - 12:30 #46149 - PG345 Comparison of Capabilities for Image Quality Improvement and Lymph Node Metastasis Differentiation among DWI with Reverse Encoding Distortion Correction (RDC DWI), conventional DWI and FDG-PET/CT in Non-Small Cell Lung Cancer.
PG345 Comparison of Capabilities for Image Quality Improvement and Lymph Node Metastasis Differentiation among DWI with Reverse Encoding Distortion Correction (RDC DWI), conventional DWI and FDG-PET/CT in Non-Small Cell Lung Cancer.

Lung MRI has been suggested as useful for nodule characterization and lymph node metastasis diagnosis, and DWI is an integral part of MRI for lung MRI, and apparent diffusion coefficient (ADC) maps derived from DWI also useful in these settings1-3. However, a major disadvantage of DWIs is that it is considerably prone to artifacts, particularly susceptibility artifacts at tissue interfaces and image blurring due to image distortion. Reverse encoding direction (RDC) techniques with different approaches have been suggested as useful for reducing distortion artifact and improving image quality and diagnostic performance on DWI in not only neuro, but also head and neck or prostatic MRI4, 5. Currently, no major reports are not assessed the capability of DWI with RDC technique (RDC DWI) for improving image quality and influence on lymph node metastasis diagnosis in lung cancer patients. We hypothesized that DWI with RDC technique (RDC DWI) was more useful than conventional DWI (cDWI) for improving image quality and differentiation of metastatic from non-metastatic lymph nodes on lung DWI in patients with non-small cell lung cancer (NSCLC). The purpose of this study was to compare capabilities for image quality improvement and lymph node metastasis differentiation among RDC DWI, cDWI and FDG-PET/CT in NSCLC patients.

40 pathologically NSCLC patients underwent STIR FASE imaging, RDC DWI and cDWI at 1.5T system (Vantage Orian, Canon Medical Systems), FDG-PET/CT at two PET/CT systems (uMRI550: United Imaging, Shanghai, China; or Biograph mCT: Siemens Healthneers, Erlangen, Germany) with same protocols, transbronchial or mediastinal biopsies, surgical treatment, pathological examinations and follow-up examinations. RDC DWI and cDWI were obtained by spin-echo type echo-planar imaging (SE-EPI) sequence by same parameters (TR 3350ms/TE 59ms, b vale 0 and 1000s/mm2, 6 number of excitation [NEX], FOV 300450 mm, 144128 acquisition matrix, 288432 reconstruction matrix, section thickness 6mm, slice gap -1mm, voxel size 1.01.06.0 mm3) with and without RDC technique. According to pathological examination results, 69 metastatic nodes and 69 out of 354 non-metastatic nodes, which were randomly computationally selected, were assessed in this study. For quantitative image quality evaluation, absolute distortion ratios (ADRs) between each DWI and STIR images and signal-to-noise ratio (SNRs) of each selected lymph node were determined by region-of -interest (ROI) measurements. On qualitative image quality assessments, overall image quality, artifact and lesion conspicuity of each lesion and lymph node were assessed by 5-point visual scoring systems. For comparison of diagnostic performance for lymph node metastasis, apparent diffusion coefficients (ADCs) on both DWIs and maximum values of standard uptake value (SUVmaxs) of all metastatic and non-metastatic nodes were also determined by ROI measurements. To compare each quantitative image quality index between RDC DWI and cDWI, paired t-test was performed. To compare all qualitative image quality indexes between two methods, Wilcoxon's signed rank tests were performed. Then, Student’s t-tests were compared to determine differences of each ADC and SUVmax between metastatic and non-metastatic lymph nodes. To compare diagnostic performance among RDC DWI, cDWI and FDG-PET/CT, ROC analyses were performed. Finally, sensitivity (SE), specificity (SP) and accuracy (AC) were compared among all methods by McNemar’s test.

Representative cases are shown in Figure 1. Figure 2 shows compared results of all quantitative indexes between two DWIs. ADR of RDC DWI was significantly smaller than that of cDWI (p=0.003). Figure 3 demonstrates compared result of each qualitative index between two DWIs. Overall image quality and artifact of RDC DWI were significantly improved as compared with those of cDWI (p<0.0001). When compared results of each ADC and SUVmax between metastatic and non-metastatic lymph nodes, there were significant differences of both ADCs and SUV max between metastatic and non-metastatic lymph nodes (p<0.0001). Figure 4 demonstrates results of ROC analysis for diagnosis of metastatic lymph node. Area under the curve (AUC) of RDC DWI was significantly larger than that of cDWI and FDG-PET/CT (p<0.05). When applied each threshold value, SP (100 [69/69] %) and AC (89.1 [123/138] %) of RDC DWI were significantly higher than those of cDWI (SP: 84.1 [58/69] %, p=0.004; AC: 79.7 [110/138] %, p=0.0002) and FDG-PET/CT (SP: 81.2 [56/69] %, p=0.0002; AC: 81.2 [112/138] %, p=0.001).

RDC technique has better potentials for improving distortion, image quality and diagnosis of lymph node metastasis as compared with conventional DWI and FDG-PET/CT in NSCLC patients.
Masahiro ENDO, Kaori YAMAMOTO, Natsuka YAZAWA, Maiko SHINOHARA, Yuichiro SANO, Masato IKEDO, Ozaki MASANORI, Masao YUI, Takahiro UEDA, Masahiko NOMURA, Takeshi YOSHIKAWA, Daisuke TAKENAKA, Yoshiyuki OZAWA, Yoshiharu OHNO (Toyoake, Japan)
11:00 - 12:30 #47387 - PG346 In situ characterization of an MRI elastography device using laser vibrometry.
PG346 In situ characterization of an MRI elastography device using laser vibrometry.

Magnetic Resonance Elastography (MRE) is a non-invasive imaging technique used to quantify the mechanical properties of tissues. This method relies on generating mechanical waves in soft tissues using an actuator synchronized with a motion-encoding gradient (MEG) sequence [1]. The emergence of new actuator designs requires precise characterization of their mechanical vibrations, both outside and inside the MRI environment, to ensure the quality and reliability of MRE-derived mechanical properties measurement [2]. Laser vibrometry has become one of the preferred solutions for measuring vibrations within the MRI environment, thanks to its electromagnetic immunity and non-contact technology [3, 4]. In this study, we characterize the vibrations generated by a commercially available pneumatic passive driver (Resoundant, Inc., United States) both inside and outside the MRI room using laser vibrometry, demonstrating the feasibility of in situ, MRI-compatible vibration measurements.

Vibration measurements, perpendicular to the surface of the passive driver, were performed using a PDV-100 laser vibrometer (Polytec, Germany). For each acquisition, a velocity profile was recorded over 3 seconds at a 48 kHz sampling rate. Thirteen mirrors were distributed across the surface of the passive driver (Fig. 1a). The driver was mounted on a custom plastic measuring bench [5] designed to minimize the transmission of mechanical vibrations (Fig. 1b, c). Vibrations were generated at 20% maximum amplitude capacity using different MRE sequences: i) clinical gradient echo sequence at 60 Hz ii) SE-EPI based 3D MRE sequence at 80 and 100 Hz in a 1.5T MR scanner. For vibration measurements outside the MRI scanner room, the laser vibrometer was aligned perpendicular to each measurement point (Fig. 1b). Velocity profiles were acquired at all points for each MRI sequence. For vibration measurements inside the MRI scanner room, the passive driver was placed at the entry of the MRI tunnel with its main surface parallel to the static magnetic field (B0). Vertical vibrations were measured by redirecting the laser beam through a prism (Fig. 1c). Velocity profiles were acquired only at the central point due to setup limitations. Data were processed using MATLAB (Mathworks, 2024), the velocity signals were bandpass filtered (cutoff frequencies: 5 Hz – 500 Hz), and the displacement profiles and spectra were computed using frequency domain integration [6]. The root mean square (RMS) displacement, fundamental frequency and harmonics together with their associated amplitudes were calculated.

Fig. 2 shows an example of the measurements performed outside the MRI at the central point for all tested sequences. The fundamental frequency matched the input frequency across all points and sequences, with significant harmonics detected up to the third order. The displacement amplitude decreased as the frequency increased. Fig. 3 shows the distribution of the displacement measured outside the MRI along the center line across the X-axis of the device. Consistent with the driver’s design, a bell-shaped profile is consistently observed for all applied sequences. Concerning the measurements performed inside the MRI, Fig. 4 shows the vibrations of the central point compared to the ones measured outside the MRI for the clinical sequence at 60Hz. On average, RMS displacement inside the MRI was 7 ± 3 % higher than outside across all sequences (Fig. 4c). This difference is within the margin of measurement uncertainty inside the MRI, estimated at ±12%(studies not shown here). The fundamental frequency observed matched the input for all sequences, consistent with outside-MRI measurements.

Frequency analysis confirmed that the driver vibrates at the command frequency, both inside and outside the MRI environment. However, as higher frequencies result in lower vibration amplitudes, appropriate compensation must be applied to maintain the same wave propagation. The similarity between displacement spectra inside and outside the MRI indicates that gradient-induced mechanical vibrations potentially transmitted through the pneumatic tube do not affect driver vibrations within the frequency range used for mechanical property characterization. Frequency and displacement measurements inside the MRI were within the uncertainty limits when compared to the outside MRI results, validating the in situ MRI characterization approach. The implementation of a scanning laser vibrometry [7] could reduce characterization time. Improvements to the current setup could enable spatial vibrations mapping inside the MRI

The Resoundant driver demonstrates accurate frequency reproduction and repeatable displacement, inside and outside the MRI environment. The developed setup demonstrates a proof of concept for in situ characterization of MRI elastography systems using laser vibrometry, enabling benchmarking closer to real conditions between devices and risk assessment of vibration effects on patient tissue.
Diego Julian GONZALEZ SOTO, Sarah MAGUIABOU FETSE (Nancy), Cédric LAURENT, Pauline FERRY, Freddy ODILLE, Jacques FELBLINGER, Pauline M. LEFEBVRE
11:00 - 12:30 #45989 - PG347 Development of Anatomically Realistic 2D MRI Phantoms of the Head and Knee for Imaging Research and Sequence Optimization.
PG347 Development of Anatomically Realistic 2D MRI Phantoms of the Head and Knee for Imaging Research and Sequence Optimization.

Magnetic Resonance Imaging (MRI) continues to evolve rapidly, driven by innovations in deep learning, quantitative mapping, and hybrid imaging approaches. Recent advances have expanded MRI’s capabilities beyond conventional anatomy imaging to include quantitative tissue profiling [1], super-resolution reconstruction [2], and even real-time therapeutic guidance [3]. As MRI systems grow increasingly complex, there is a growing need for more versatile, anatomically realistic phantoms that replicate both structural detail and tissue-specific contrast behavior to support the testing, development, and teaching of these emerging technologies [4,5]. While many existing phantoms focus on replicating quantitative relaxation times, they remain overly simplistic in structure, lacking the anatomical complexity and clinically relevant relative contrast seen in vivo [4,6], particularly in musculoskeletal imaging, where no anatomically accurate MRI phantom of the knee currently exists. To address this gap, we present the technical development and evaluation of 3D printed sectional (2D) anatomically realistic head and knee phantoms, designed to achieve both qualitative contrast realism and quantitative relaxation times which are critical for MRI technologies development testing and validation.

Our phantom development followed four main steps: (1) manual segmentation of MRI images, (2) CAD-based modeling, (3) formulation of tissue-mimicking materials (TMMs), and (4) 3D printing, filling, and MRI validation (Fig. 1). TMM compositions were selected based on literature [7–11] to replicate contrast behavior seen in T1- and T2-weighted imaging. MRI slices (sagittal, axial, coronal) of the head and knee were sourced from our institutional image library and manually delineated by an expert radiologist. Segmentations were exported as .svg files and modeled into hollow modules using PTC-Creo. CAD models were scaled 1:1 of average size of the specific human anatomy simulated, exported as .stl, and sliced in BambuStudio. Printing was done using 1.75 mm PETG filament on an FDM printer (parameters in Fig. 2a). Each TMM was poured into its corresponding compartment in the 3D printed hollow modules using a beaker or syringe, sealed with film, and stored at 4 °C. Imaging was performed on a 1.5 T clinical scanner (Ingenia Evolution, Philips Healthcare) with a Head-Neck coil. Phantoms were scanned using T1w, T2w and Rhow sequences to evaluate contrast, resolution, and artefact behavior (acquisition parameters in Fig 2b).

Figures 3 and 4 present the qualitative MRI results of the head and knee phantoms respectively. Figure 3a shows a reference axial MRI image of the human knee, while Figures 3b-d display the corresponding phantom images acquired using the protocols outlined in Figure 2, depicting comparable anatomical regions and contrast realism. Figure 4a presents a sagittal MRI image of the human head, included for comparison with phantom images in Figures 4b-d, which illustrate how variations in acquisition parameters, specifically pixel size affect spatial resolution. Figure 4d highlights the anatomical fidelity of the sagittal phantom, with several key structures readily identifiable.

We have developed high-fidelity, anatomically realistic MRI phantoms of the head and knee, achieving relative contrast consistent with clinical expectations in T1-weighted, T2-weighted, and proton density-weighted sequences. By comparing phantom images to human MRI references, we qualitatively confirmed their ability to reproduce tissue-specific contrast patterns and recognizable anatomical features. Beyond visual validation, the phantoms were used to demonstrate a practical use case in image quality assessment. Varying acquisition parameters, particularly pixel size, revealed visible differences in spatial resolution and artefact expression. For example, truncation artefacts (black arrowhead, Figure 4b) were more pronounced in lower-resolution images, while anatomical detail (white arrowhead, Figure 4c) improved with higher matrix acquisition. These underscore the phantom’s utility in sequence optimization and technical benchmarking. The ability to identify multiple anatomical structures further supports the phantom’s application in education and training, providing a reusable, ethically neutral platform for hands-on MRI instruction. While this work was able to achieve anatomical and contrast realism, quantitative relaxometric accuracy (T1 and T2 mapping) remains an ongoing objective. Future efforts will incorporate these parameters to extend the phantom’s application to quantitative imaging research, sequence standardization, and the generation of machine learning-ready datasets.

This work presents anatomically and contrast-representative MRI phantoms of the head and knee, demonstrating their value in imaging protocol evaluation and radiographic training. These models lay the foundation for future development of fully quantitative, multi-purpose MRI phantoms.
Habeeb YUSUFF (Strasbourg), Thibault WILLAUME, Elodie BRETON, Guillaume BIERRY, Jean‐Philippe DILLENSEGER
11:00 - 12:30 #46475 - PG348 Numerical derivation of synthetic FLAIR images from quantitative T1 and T2 maps with suppression of CSF partial volume and subject motion effects.
PG348 Numerical derivation of synthetic FLAIR images from quantitative T1 and T2 maps with suppression of CSF partial volume and subject motion effects.

Fluid Attenuated Inversion Recovery (FLAIR) is a widely used sequence for clinical diagnosis [1]. The construction of synthetic FLAIR (synFLAIR) images from quantitative MRI (qMRI) data may suffer from CSF partial volume (PV) effects [2,3], yielding false positives. To overcome this issue, several approaches such as deep-learning-based techniques [4,5] have been proposed. Here, a numerical algorithm for synFLAIR image calculation from T1 and T2 maps with suppression of CSF PV and motion artefacts is described.

Data were acquired on a 3T scanner for 5 healthy subjects (29-79y) and 20 patients with essential hypertension (50-70y). For each subject, acquisition comprised: T1 mapping: variable flip angle method, FoV=256mm x 224mm x 160mm, 1mm isotropic resolution, FA=4/24°, TR/TE=16.4/6.7ms, including B1 and B0 mapping [6]; T2 mapping: five turbo spin echo data sets, FoV=256mm x 176mm x 125mm, resolution 1mm x 1mm x 2.5mm, TR=10s, TE={17,86,103,120,188}ms. T1 and T2 calculation was performed according to [7] and [8], respectively. For synFLAIR image calculation, the following parameters were assumed at 3T: T1_CSF=4.5s [9], T2_CSF=2s [10], maximum tissue T2: T2_max=90ms [11,12]. The algorithm comprises the following five steps: (A) Processing of T1 map: A mask of pure CSF is derived from T1>2/3*T1_CSF and subdivided into inner (ventricles) and outer (sulci) CSF (Fig. 1a). CSF PVs are detected according to [13], deriving an enhancement parameter (EP) from T1 gradients (Fig. 1b). A parameter V is obtained by fitting T1 versus EP, highlighting areas of potential CSF PVs (Fig. 1c). These areas are added to the outer CSF via mask growing, resulting in the final mask CSF1 (Fig. 1d). Please note that CSF1 comprises both pixels with pure CSF and with CSF PVs. Tissue R1 (R1_tiss) is derived as 1/T1 outside of CSF and extrapolated across the CSF areas indicated in CSF1. The CSF PV in the T1 map (pv1, see Fig. 1e), is then derived by assuming approximately R1=pv1*R1_CSF+(1-pv1)*R1_tiss. (B) Processing of T2 map: T2 maps are co-registered to T1 maps. A T2-based mask CSF2 is calculated by adding to CSF1 inside a surrounding 2-pixel-layer connected areas with T2>T2_max. R2_tiss and the CSF PV in the T2 map (pv2, see Fig. 1f) are then derived in the same way as for T1. An effective T2 is calculated: T2_eff=T2 (for pv2=0) and T2_eff=1/R2_tiss (for pv2>0). (C) Creation of background image (BI) from T1 map: A pseudo proton density (PD) map is derived from the T1 map according to [9] and a (purely T1-based) BI is calculated as BI=(1-pv1)*PD2 (Fig. 2a). Here, the first factor suppresses CSF, the second factor introduces PD-weighting and an additional pseudo-T2-weighting across white (WM) and gray (GM) matter since the quotient T2(GM)/T2(WM) matches roughly PD(GM)/PD(WM) [11,12,14]. (D) Creation of synFLAIR images: synFLAIR=BI*f(T2_eff) where f provides a T2-based signal enhancement and is given by: f=1 (for T2_eff=T2_max). For TE, 200ms is chosen. (E) Motion correction: To suppress false positives due to motion artefacts in the T2 map, T2-based enhancement is only allowed for areas that also have elevated T1 values (average inner T1 must be at least 1% larger than the surrounding T1).

Figure 2 shows for a healthy subject BI (Fig. 2a), synFLAIR (Fig. 2b) and conventional 2D FLAIR (Fig. 2c) and 3D FLAIR (Fig. 2d). synFLAIR does not show any false positives due to CSF PVs. Figure 3 shows for a patient with WM lesions (79y, arterial hypertension) four slices from synFLAIR (Fig. 3a) and from a conventional 3D FLAIR (Fig. 3b). synFLAIR highlights identical areas and is again free from false positives due to CSF PVs. Figure 4 shows the effects of motion correction: motion artefacts in the T2 map (Fig. 4a) result in false positives in the uncorrected synFLAIR (Fig. 4c). As the respective areas are not salient in the T1 map (Fig. 4b), erroneous enhancement is suppressed in the corrected synFLAIR (Fig. 4d).

The presented algorithm for synFLAIR image generation from quantitative T1 and T2 maps is free from false positives due to CSF PV effects. It also includes the suppression of motion artefacts in the T2 map which are prone to cause erroneous hyper-intensity in synFLAIR. The synthetic FLAIR images presented here enhance the same areas as conventional FLAIR data. A potential improvement would be an additional correction for motion artefacts in the T1 map as these may reduce the quality of the CSF1 mask and hamper CSF suppression.

The calculation of synthetic FLAIR images from T1 and T2 maps may help to save the scanning time required for conventional FLAIR acquisition in studies employing qMRI techniques. Please note that the potential of qMRI is not limited to the construction of synthetic FLAIR images, but extends to any type of weighting, offering great potential for saving scanner time and improving diagnosis.
Ulrike NOETH (Frankfurt am Main, Germany), Nenad POLOMAC, Elke HATTINGEN, Ralf DEICHMANN
11:00 - 12:30 #47913 - PG349 Assessing the impact of partial volume effect on cerebrovascular reactivity magnitude using anatomically-based simulations.
PG349 Assessing the impact of partial volume effect on cerebrovascular reactivity magnitude using anatomically-based simulations.

Cerebrovascular reactivity (CVR) measures capacity of blood vessels to respond to demand, which is reduced in several vascular diseases [1]. CVR can be measured using blood oxygen level dependent (BOLD) MRI, typically during a block-design paradigm alternating between medical air and air with a small proportion of CO2, to induce hypercapnia. As an in vivo measure, assessing the effect of potential confounders on CVR can be challenging. Previously, different processing approaches have been assessed using simulations [2]. However, such simulations and most CVR analyses do not typically accounted for the anatomical distribution of values nor partial volume effects (PVE), contamination of binarised tissue masks with different vascular responses from other adjacent tissues [3]. In this project, we used anatomically-based simulations to assess the effect of partial volume contamination on CVR analyses.

We used an openly accessible dataset (https://doi.org/10.7488/ds/3492, n=15) to determine tissue-specific ground-truth CVR magnitude and delay distributions as briefly described below [2]. For each subject, we segmented the T1-w scan in to cerebrospinal fluid (CSF), cortical and subcortical grey (SGM) and white (WM) matter. We preprocessed the best quality BOLD scan and calculated voxelwise CVR using a delay-adjusted linear regression, as previously described [4]. As a proxy for blood vessels, which tend to have low BOLD signal and higher signal variability, [5] we calculated percentage voxelwise temporal noise-to-signal ratio and thresholded at 6%, based on visual inspection of the resulting masks. For each region, we defined CVR magnitude and delay distributions using probability density functions derived from the Gaussian kernel density estimate. We simulated CVR magnitude and delay maps by sampling from each tissue distribution using the high-resolution (0.5mm3) Multimodal Imaging-based Detailed Anatomical (MIDA) template as a reference to define the tissue type [6]. For each simulated map, we created a simulated BOLD timecourse (Fig.1) assuming a block-design end-tidal CO2 trace (2 minutes at 40 mmHg normocapnia, 3 minutes at 50 mmHg hypercapnia alternating for 12 minutes), replicating previous work [2]. For each voxel we shifted the timecourse by the simulated delay, added per-tissue signal intensity offsets based on the BOLD baseline signal and random Gaussian noise with temporal contrast-to-noise ratios matched to the relevant tissue. To introduce partial volume effect and reflect the spatial resolution of typical BOLD-CVR acquisitions, we downsampled the resulting simulated BOLD scans to the acquisition resolution (2.5mm3) using AntsPy with trilinear interpolation to apply a non-linear transform between the MIDA and subject-specific mean BOLD [7]. We calculated CVR using delay-adjusted linear regression [4]. For each dataset we performed 10 simulations. We visually compared the simulated maps against representative CVR magnitude maps from the reference dataset. Using Bland-Altman plots, we assessed per-tissue CVR magnitude differences between the simulated CVR map registered to the mean BOLD space and calculated CVR after downsampling the simulated BOLD timecourse. To assess the influence of partial volume effect, we plotted CVR magnitude and delay separately against the proportion of contamination from grey matter and vessels.

We found simulated CVR maps were comparable to the downsampled reference (Fig.2), After downsampling, CVR magnitude tended lower relative to the simulated reference map in all tissues, but Bland-Altman plots showed no systematic bias (Fig.3). As the proportion of blood vessel and grey matter partial volume contamination increased, simulated WM CVR magnitude increased and delay shortened, with a more pronounced effect for voxels adjacent to blood vessels (Fig.4A-B). For example, in voxels contaminated by surrounding blood vessels WM CVR magnitude was 59% higher than in uncontaminated voxels.

We showed simulations informed by underlying anatomy can be used to evaluate how partial volume contamination from surrounding tissues can affect CVR magnitude and delay. As well as identifying how partial volume effects may impact CVR analyses, such simulations can be used to evaluate robustness of different methods to contamination and pre/post-processing strategies to mitigate the impact [3, 8]. Future comparisons would benefit from more accurate blood vessel segmentations and should quantify how CVR is affected in voxels adjacent to CSF.

We successfully implemented anatomically-based computational simulations to assess the effect of partial volume effects on CVR magnitude, helping inform interpretation of CVR analyses and may help develop more robust CVR quantification methods.
Chia-Lin WANG, Emilie SLEIGHT, Joanna M WARDLAW, Michael J THRIPPLETON, Michael S STRINGER (Edinburgh, United Kingdom)
11:00 - 12:30 #47937 - PG350 MR-EPT conductivity determination adopting three different sequences for phase mapping.
PG350 MR-EPT conductivity determination adopting three different sequences for phase mapping.

Magnetic Resonance (MR) technique, commonly used for anatomical imaging, can also assess dielectric properties (DPs) of biological tissues. DPs describe tissues response to applied electromagnetic fields (EMF) and are essential for the planning, monitoring and optimization of medical techniques based on the use of EMF on patients [1]. MR-Electric Properties Tomography (EPT) approach reconstructs the DPs of tissues at the resonance frequency of the MR scanner from the amplitude and phase of the radiofrequency transmit magnetic induction B1 [2]. Due to the invasiveness of traditional techniques for the dielectric characterization of tissues, the possibility to use MR for this aim is very promising. MR-EPT workflow is made of two steps. First, the spatial distribution of B1 in the tissues is measured through specific sequences. Secondly, tissues DPs are reconstructed using different methods [3]. Both the sequence definition and the choice of the EPT method are complex tasks to manage, being dependent on the experimental case of interest. The aim of this work is to investigate MR-EPT sequences in the reconstruction of the conductivity of biological tissues. To this end, ex-vivo animal muscle and fat tissues were imaged, adopting three different sequences for phase mapping and exploring the differences among the three frameworks.

The MR acquisitions were done using a 3 T body coil scanner (Skyra, Siemens) for transmission and both the body coil and a head-neck 20 channels coil (Siemens) for reception. Muscle and fat ex-vivo samples were placed in a plastic beaker within the scanner. The B1 phase was measured with three sequences: a spin-echo (SE) based vendor-built sequence, called RF map, a classical spin echo, and a balanced steady state free precession (bSSFP) based vendor-built sequence, called BEAT. Raw data were acquired and processed to obtain the phase of the signal. The conductivity was derived at 128 MHz using the forward Helmholtz method implemented in MATLAB [3]. This method is straightforward to implement and physically based but, with respect to the other EPT methods, is strongly affected by noise and boundary errors. As reference for the MR-EPT obtained results, the conductivity of both tissues at 128 MHz was measured with the open-ended probe technique [4].

The phase map was derived from the raw data for each of the three sequences, considering reception both with the head and the body coil. The RF map sequence was characterized by an acquisition time of 8.53 minutes and by a slice thickness of 5 mm which could bring, in the in vivo case, to the loss of important anatomical details smaller than 5 mm. The SE sequence required 11.8 minutes for the acquisition but the slice thickness had a more acceptable value of 2 mm. The BEAT sequence lasted, instead, only 41 seconds and provided a slice thickness of 2.5 mm, but the obtained signal was affected by banding artifacts. These artifacts must be deleted through the tuning of the sequence parameters for the specific case of interest. Therefore, a proper shimming was applied, deleting these artifacts. Once the phase was obtained, the conductivity of muscle and fat was derived with H-EPT and some image processing procedures such as denoising and segmentation were applied. The modal value and the standard deviation among the values obtained in the pixels of the image were computed for each tissue and each sequence. The best agreement with the open-ended probe measurements was found with the SE sequence when the head coil was used as receiver, with percentage errors of 6 % and 2.50 % for muscle and fat, respectively. In the case of the RF map, errors of 13.4 % (muscle) and 0.83 % (fat) were obtained, while errors of 76.07 % (muscle) and 33.14 % (fat) were found for the bSSFP. For the body coil case, results obtained for fat were very distant from the open probe measurements probably due to the higher level of noise when this coil was used as receiver [5]. Overall, H-EPT results, considered with the associated variability, agreed with open probe measurements.

The results showed that, depending on the adopted sequence for phase mapping, some differences in the conductivity reconstruction are found. The use of a SE sequence adopting the head coil as receiver provided the best results but also the longest acquisition time. Even the RF map provided good results but long acquisition times and a too big slice thickness. On the contrary, the bSSFP sequence provided a faster acquisition with good slice thickness value but worse conductivity results and the need of tuning the parameters to delete banding artifacts.

This work compared three MR sequences applied using a Skyra Siemens scanner for the measurement of the B1 phase for the conductivity derivation through EPT. The findings demonstrated that, depending on the adopted sequence and coil for reception, specific operations must be considered adjusting the framework to find the best experimental compromise.
Flavia LIPORACE (Rome, Italy), Marta CAVAGNARO, Antonio NAPOLITANO
11:00 - 12:30 #47578 - PG351 Integration of steady-state diffusion MRI with Neural Posterior Estimation (NPE).
PG351 Integration of steady-state diffusion MRI with Neural Posterior Estimation (NPE).

Diffusion-weighted steady-state free precession (DW-SSFP) [1] is a diffusion imaging sequence achieving high SNR-efficiency and strong diffusion-weighting [2] (Figure 1). Previous work has demonstrated that DW-SSFP signal measurements may be highly sensitive to microstructural features [3,4,5], motivating the use of sophisticated biophysical models for DW-SSFP investigations. However, the complicated signal-forming mechanisms of DW-SSFP [6] currently limits the integration of advanced simulations with parameter estimation routines [4]. In this work, I investigate the integration of DW-SSFP with Neural Posterior Estimation (NPE), a parameter inference technique leveraging concepts from Bayesian statistics and machine learning [7-9]. Briefly, given a prior distribution of parameters, P(θ), and a forward simulation model, f(θ→S), NPE uses simulated data pairs [D,S] to train a neural network to directly estimate the posterior distribution, P(θ | S). Once trained, experimental data can be passed to the network to perform parameter inference (Figure 2). Previous work has demonstrated the potential of NPE for diffusion-weighted spin-echo (DW-SE) investigations [10,11]. However, the DW-SSFP signal has additional dependencies on tissue relaxation properties (T1 & T2) and B1, which must be estimated for accurate diffusion modelling [6]. From the perspective of NPE, this corresponds to a different forward model per [T1,T2,B1] combination. Training a different forward model per [T1,T2,B1] combination is infeasible, requiring the adoption of an alternative method to address signal dependencies. Here, I address signal dependences in DW-SSFP by adapting an NPE network to estimate P(θ | S,T1,T2,B1), i.e. the posterior distribution conditioned on the measured signal and known [T1,T2,B1] values (Figure 2). The proposed network successfully accounts for DW-SSFP signal dependencies, achieving >300x acceleration and excellent agreement with conventional non-linear least-squares (NLLS). Evaluations are performed using a Tensor representation of the DW-SSFP signal.

DW-SSFP data was acquired in a single post-mortem brain (Siemens 7T; 0.85 mm iso.; 120 directions), alongside complementary turbo-inversion recovery (TIR), turbo-spin echo (TSE) and actual flip angle (AFI) [12] data for T1, T2 and B1 mapping. For full details of sequence parameters and mapping techniques, see [13]. A forward model of the DW-SSFP signal incorporating a Tensor [4] was established incorporating experimental DW-SSFP acquisition parameters, T1, T2, B1, and Tensor coefficients. NPE was implemented using the SBI toolbox (0.23.3) [14] in Python (3.12.8) as follows: - Priors: Uniform distributions, limits = [0, 0.5] μm/ms (diagonal components) & [-0.25, 0.25] μm/ms (off-diagonal components). A classifier network was trained [15] to ensure simulated Tensors were positive semi-definite. - Data Pairs: 6,000,000 data pairs, corresponding to 1,000,000 simulations with 5 Rician noise levels (uniform distribution, SNR limits = [2, 50]) + noise free. Each simulation was associated with an arbitrary Tensor (prior estimate), T1, T2 and B1 (uniform distributions, limits [300, 1200] ms, [20, 80] ms, and [0.2, 1.2]). - Training: The NPE network was implemented using neural spline flows [16], with default SBI toolbox parameters. [T1,T2,B1] conditioning was achieved by appending their values to the signal during training, creating a 1D vector corresponding to [S,T1,T2,B1] (Figure 2). The network was trained on a personal laptop in ~31 hours, converging after 210 epochs. - Evaluation: The network was evaluated using both simulated and experimental DW-SSFP data, performing comparisons with NLLS.

Figure 3a-c compares estimated Tensor coefficients as a function (a) T1, (b) T2, and (c) B1 using NPE. Excellent agreement is found with ground truth (0.2% mean difference). Figure 3d compares the accuracy of parameter estimation for NPE and NLLS associated with different SNR levels, achieving similar accuracy (0.3% mean difference). NPE benefits from ~380x acceleration versus NLLS for parameter estimation. Figure 4 compares experimental Tensor estimates using (a) NPE and (b) NLLS. Excellent agreement is found, achieving R = 0.974 for fractional anisotropy (FA) maps. NPE additionally benefits from detailed posterior distributions, with Figure 4c displaying an example distribution for a single corpus callosum voxel.

I demonstrate that NPE achieves fast and accurate parameter inference from DW-SSFP data, with the proposed conditioning approach accounting for dependencies on T1, T2 and B1. Resulting parameter estimates give excellent agreement to ground-truth simulations (Figure 3) and experimental NLLS estimates (Figure 4). The implemented routine could be adapted to incorporate more sophisticated microstructural models, including Monte Carlo simulations [17].

NPE achieves fast and accurate parameter inference for DW-SSFP investigations.
Benjamin TENDLER (Oxford, United Kingdom)
11:00 - 12:30 #47552 - PG352 A new Imageless Magnetic Resonance framework for on-site Diagnosis with a simulation case study.
PG352 A new Imageless Magnetic Resonance framework for on-site Diagnosis with a simulation case study.

Diagnostic tests are key medical tools to detect or rule out specific pathologies. Magnetic Resonance Imaging (MRI) is very attractive due to its non-invasive and non-ionizing nature, but its high cost, complex infrastructure and long scanning times, keep it enclosed in hospitals and tied to long bottlenecks [1]. Low Field (LF) MRI relaxes cost and hardware specifications at the expense of image resolution, often improved by AI post-processing [2], [3]. Yet, insofar as MR is image-based, hardware and scanning time necessities remain hefty. Whereas previous imageless attempts detaching image from MR still worked on k-space data representation [4]–[6], in this work we advocate for a more radical Imageless MR Diagnosis (IMRD), based on raw 1D MR time signals, further lowering barriers for MR use. An IMRD solution comprises (i) the minimal structure of hardware, (ii) the optimal information encoding in MR data and (iii) optimal models for processing such data. In this work, we showcase an IMRD proof-of-concept proposing a combination of these three components with a simulated case study, aiming to detect and quantify in silico Multiple Sclerosis (MS) lesions [7], [8].

We downloaded 17 healthy phantoms with White Matter (WM), Grey Matter (GM) and Cerbrospinal Fluid (CSF) tissues from Brainweb [9], and in-silico MS lesions were simulated in each phantom [10]. Healthy and MS-affected slices were randomly selected to build a final data set of 935 brain slices, with in-silico MS in nearly 40 % of them (Figure 1). Next, we simulated MR signals for each slice in the data set (Figure 2). The simulated acquisitions used a ZTE-like sequence [11]. Once a radial spoke is set, an initial Inversion Recovery (IR) pulse is followed by a train of RF pulses, introducing a rewind gradient at half the TR. The time for IR (∈[0.01,2] s), the Repetition Times (TRs, ∈[10,500] ms) and Flip Angles (FA ∈[10,150] º), of the MR sequence were optimized to maximize MS tissue distinguishability by minimizing the cross-correlation between tissues’ transverse magnetization signals. Literature T1 and T2 values for WM, GM, CSF and MS at 1.5 T were used [12]–[14]. Besides, we considered two minimal-hardware acquisitions: single-gradient (Figure 2 b)— with 1-dimensional spatial encoding by applying a frequency gradient in the X-axis at 0º—and gradientless (Figure 2 c)—with the pure Free Induction Decay (FID) signal. The final sequence consisted of 30 TRs and takes less than five seconds in both acquisitions. White noise at 54 dB was injected into the simulated MR signals, a reference value extracted from our portable 72 mT scanner [15], [16]. Finally, we trained 1D Convolutional Neural Networks (1D CNNs, Figure 3) [17] to estimate the volume and presence of MS lesions from each acquisition’s 1D MR signals, leaving a test set of 110 slices from two phantoms for final model evaluation.

Figure 4 shows the results in the test set. The single-spoke acquisition reported an MS lesion detection AUC of 0.95, and a volume estimation accuracy of R² close to 0.8. The gradientless setup yielded an AUC of 0.8 and an R² of 0.98. The largest missed lesions were 0.06 mL and 0.26 mL for single-spoke and gradientless, respectively.

The more accurate MS volume estimation with gradientless suggests that the dephasing induced by the gradient in single-spoke accelerates the decay of transversal magnetization signals (Figure 2 b), governed by T2*, losing the relevant information that is otherwise preserved in the gradientless’ signal slower decay (Figure 2 c). Nonetheless, the overestimation at zero MS volumes, (Figure 4 d), still leaves room for improvement, and real-world MS cases are likely to require additional data processing steps.

IMRD relies on raw MR signals optimally encoding information registered by minimal hardware and scan time. Our in-silico case study aimed to exemplify such an IMRD framework in practice by detecting or quantifying MS tissue within a sample. Results with this in silico prototype of IMRD solution with (i) minimal or no spatial encoding, (ii) fast MR sequences below 5 seconds and (iii) data-driven models as CNNs, suggest that IMRD frameworks could successfully answer closed diagnostic questions. Yet, different scenarios—detecting other pathological events, as stroke or liver fibrosis, or measuring the spatial features of tissues as in lissencephaly—will probably require a different articulation of components. It is therefore vital to test IMRD with more clinical enquiries, ex vivo and in vivo data, which will probably imply changes in hardware, MR sequence and data processing. If successful, IMRD approaches could widen the possibilities of LF MR scanners, bringing on-site and nearly instant MR-based diagnosis.
Alba GONZÁLEZ-CEBRIÁN (València, Spain), Pablo GARCÍA-CRISTÓBAL, Fernando GALVE, Viktor VAN DER VALK, Efe ILICAK, Marius STARING, Webb ANDREW, Joseba ALONSO
11:00 - 12:30 #47592 - PG353 Assessing measurement consistency of a novel anisotropic phantom for higher order diffusion tensor MRI sequences.
PG353 Assessing measurement consistency of a novel anisotropic phantom for higher order diffusion tensor MRI sequences.

Diffusion MRI (dMRI) provides valuable insight into tissue microstructure for clinical and research applications. Traditional diffusion tensor imaging (DTI) models diffusion as a Gaussian process, which limits its accuracy in regions with complex fibre configurations (such as crossing or bifurcating tracts) [1]. Higher-order models, including diffusion kurtosis imaging (DKI) and constrained spherical deconvolution (CSD), address these limitations by capturing non-Gaussian diffusion behaviour or by resolving multiple fibre orientations within a voxel. Despite their theoretical advantages, these models are more sensitive to noise and acquisition variability, raising concerns about reproducibility [2]. Currently, there is no standardized method to perform quality assurance on dMRI data, and there are limited studies measuring the reproducibility of higher-order tensor metrics. This study aims to investigate the consistency of a novel anisotropic diffusion phantom (PreOperative Performance, Toronto, ON) for higher-order tensor dMRI protocols. While this phantom has recently demonstrated reliability for rank-2 tensor metrics across different MRI vendors, its suitability for higher-order models remains to be established [3].

The phantom consists of fixed cylindrical synthetic filaments (diameter = 2 μm) embedded in a PVA matrix, arranged into modules that emulate linear, crossing, and branching white matter structures. It was scanned 11 times across 3 days on a 3T Discovery MR750 (General Electric HealthCare, Waukesha, WI). The protocol included a conventional DTI sequence (30 directions, b=1000 s/mm²), two high angular resolution diffusion imaging (HARDI) acquisitions (60 and 90 directions, b=1300 s/mm²), and a multi-shell DKI sequence (30 directions, b=250–3000 s/mm²). Six regions of interest (ROIs) were drawn in various locations (Figure 1). Metrics were extracted using DIPY and FSL from three models: DTI (FA, MD, AD, RD), DKI (KFA, MK, AK, RK), and CSD (GFA). Reproducibility was assessed using coefficient of variation (CoV) and intraclass correlation coefficient (ICC).

DTI-derived metrics showed excellent reproducibility across all ROIs (ICC > 0.9), with HARDI acquisitions slightly outperforming DTI in reducing variability (Figure 2). FA exhibited CoVs < 10% while MD, AD, and RD had CoVs < 3%. DKI metrics displayed greater variability (Figure 3). KFA showed moderate CoV (~4–11%) but maintained strong ICCs. MK values ranged widely in CoV (10–27%), with the highest variability in ROIs featuring fibre crossings or branching. AK and RK had the least stability, with CoV exceeding 30% in certain ROIs, reflecting model sensitivity to fitting instability at high b-values. GFA, derived from CSD, had moderate reproducibility across acquisitions (Figure 3). CoV was lowest for HARDI-60 (2.30%) and highest for DTI (3.26%). ICCs were 0.6603 (DTI), 0.8046 (HARDI-60), and 0.8507 (HARDI-90), suggesting increasing reliability with higher angular resolution (Figure 3).

The phantom showed high reproducibility for DTI metrics, supporting its use in conventional tensor-based QA. HARDI protocols provided modest improvements in complex regions, aligning with research showing increased angular resolution enhances tensor fitting [2]. In contrast, DKI parameters demonstrated moderate reproducibility, with KFA being the most stable (CoV ~7.36%, ICC 0.9361). MK, AK, and RK showed increased variability (CoV 14-18%), particularly in complex fibre regions, reflecting the sensitivity of kurtosis metrics to noise and acquisition parameters. These findings suggest DKI metrics require more stringent quality assurance protocols when used for quantitative assessment. CSD-derived GFA exhibited improved reproducibility with increased angular resolution, as evidenced by the higher ICC values for HARDI-90 (0.8507) compared to conventional DTI (0.6603). Importantly, qualitative examination of CSD fibre orientation distribution functions (Figure 4) demonstrates the phantom's ability to accurately represent complex fibre architectures that cannot be resolved using conventional DTI. Distinct peaks were observed at expected crossing locations, suggesting the phantom’s internal geometry provides sufficient angular contrast to evaluate orientation-resolving models. However, the variability in GFA and DKI metrics highlight the need for further refinement of acquisition and processing pipelines before routine use of higher-order models in QA workflows.

The PreOperative Performance phantom offers a consistent and repeatable platform for assessing conventional dMRI metrics and shows promise for evaluating more advanced modelling frameworks. These findings support the use of this phantom in future multi-centre studies but also emphasize the continued need to refine acquisition protocols and modelling techniques for higher-order diffusion analyses. Future work should expand to cover inter-scanner and inter-vendor reproducibility and evaluate phantom stability over time.
Lauren STEPHENS (Hamilton, Canada), Fergal KERINS, Norm KONYER, Michael NOSEWORTHY
11:00 - 12:30 #47906 - PG354 Phantom assessment of quantitative susceptibility mapping (qsm) acquisition acceleration.
PG354 Phantom assessment of quantitative susceptibility mapping (qsm) acquisition acceleration.

Quantitative Susceptibility Mapping (QSM) is a quantitative MRI technique that maps the spatial distribution of magnetic susceptibility, having shown promise for biomarker imaging applications [1]. For QSM to reach widespread clinical use, its acquisition time must be reduced whilst maintaining accuracy and image quality. Parallel imaging (PI) techniques are extensively used to reduce clinical acquisition time. However PI must be carefully optimised as higher levels of acceleration can degrade image quality by introducing heterogenous noise and aliasing artefact [2–4]. Phantoms can provide reference values for evaluating the performance of quantitative MRI techniques [5, 6]. This study aims to assess the impact of PI acceleration, for reducing QSM acquisition times, on the accuracy and quality of QSM maps.

A Gadolinium-based phantom was constructed to provide reference susceptibility values. The phantom consisted of a 2L water-filled container with six targets containers (diameter=25mm, length=92mm), five with varying concentrations of a Gadolinium-based contrast agent (Clariscan 279.3 mg/ml, gadoteric acid, GE Healthcare), mimicking susceptibility values in-vivo (0.052, 0.104, 0.155,0.31,0.57ppm) [7] and one containing water only. Multi-echo gradient echo magnitude and phase images were acquired at 1.5 T using recommended acquisition parameters from the QSM consensus group (see figure 1B) [8]. Parallel imaging factors were varied both in-plane (R1) and through-plane (R2), with a total of five acquisitions obtained. The acquisition with PI factors R1=2 and R2=1 was taken as the “gold-standard”. QSM maps were reconstructed using the SEPIA Toolbox in MATLAB (2024b) [9, 10]. A “two-pass masking” based approach was performed [11] using nonlinear echo-combination[12], phase unwrapping using SEGUE[13] , background field removal using PDF[14] and dipole inversion using Iterative Tikhonov [15]. Six regions of interest (ROI) were defined in the phantom targets[16]. Mean and standard deviation susceptibility were calculated for each ROI and acquisition and plotted against expected susceptibility. Agreement was assessed using linear regression to obtain the slope, intercept and coefficient of determination (R2). The modified structural similarity index measure (SSIM) for QSM, XSIM, was used to compare image quality against the gold-standard acquisition, yielding four XSIM maps [17]. Parameters for calculating the XSIM maps (K1 = 0.01, K2 = 0.001 and L=1) were obtained from Milovic et al., 2022 [18].

PI accelerated QSM maps are shown in figure 2, illustrating the qualitative differences between acquisitions. Measured versus expected susceptibility values are shown in figure 3. Vertical error bars represent ROI standard deviations while horizontal error bars represent Gadolinium concentration uncertainty of each target. Solid lines (blue) show estimates from linear regression with dotted lines showing ideal agreement. Shaded areas are bounded by 95% confidence intervals of the fit. Fit parameters are included with associated 95% confidence intervals. In-plane, through-plane XSIM maps and mean XSIM for PI factors are shown in figure 4.

Quantitative susceptibility measurements (figure 3) show good linear agreement with expected values for QSM maps with increasing PI factor: (R1=2, R2=2), (R1=3, R2=1) and (R1=3, R2=2). The results show the potential to reduce acquisition times to 33% that of standard scanning while maintaining accuracy. However, quantitative measurements are impacted when using parallel imaging factors of R1=3 and R2=3, as severe artifacts are apparent. XSIM measurements demonstrate a decrease in image quality with increasing parallel imaging factor. XSIM maps are heterogeneous, highlighting the non-uniform increase in noise for increasing parallel imaging factor.

This study assessed the effect of increased parallel imaging on measured susceptibility values and image quality. Good agreement was found between ROI measurements and expected values despite increasing in-plane and through-plane PI factors. However, a parallel imaging factor of 3 for both R1 and R2 yielded severely artifacted QSM maps and poor susceptibility measurements. XSIM indicates decreasing image quality with increasing PI acceleration and highlights the heterogeneity of noise introduced by PI. Further work will look at the impact of partial fourier imaging on the accuracy and image quality and develop diamagnetic targets to characterise the full spectrum of susceptibility found in vivo.
Lawrence GUARDIANO (Dublin, Ireland), Sean COURNANE, Luis LEON VINTRO, Andrea DOYLE, Alan J. STONE
11:00 - 12:30 #47979 - PG355 Water-Fat-SPIO Phantom for Validation of Model-Based Reconstruction for Joint Estimation of Multiple Quantitative Maps using Single-Shot IR Multi-Echo Radial FLASH.
PG355 Water-Fat-SPIO Phantom for Validation of Model-Based Reconstruction for Joint Estimation of Multiple Quantitative Maps using Single-Shot IR Multi-Echo Radial FLASH.

While quantitative water-specific T1, R2* and fat-fraction (FF) mapping is of great interest in liver imaging [1,2], conventional methods are typically time-intensive, since they require individual data acquisition for each map. Here, we apply a fully non-linear model to reconstruct water-specific T1, R2*, and B0 field maps directly from k-space data [3]. By evaluating results obtained from our in-house designed and manufactured water-fat-SPIO phantom, we present one step towards validating our proposed method. Here, the goal was to design and construct a quantitative MR phantom that covers all three parameter maps with good accuracy while keeping the manufacturing process simple.

When designing our water-fat-SPIO phantom, we adopted manufacturing instructions of existing protocols [4,5]. Our phantom is comprised of 18 vials (18 mL) with varying designed fat volume percentages (0, 5, 10, 20, 40 and 100%), iron concentrations (0, 50, and 150 µg/mL) and T1 water values (800 and 1500 ms). Similar to Hines et al. we chose peanut oil and super paramagnetic iron oxide (SPIO) particles (magnetite, 5 nm, Sigma-Aldrich) to modulate fat concentration and R2*. Distilled water was doped with gadobutrol (Gadovist, Bayer Vital GmbH, Germany) to modulate water-specific T1 values. For gelling, we added Agar (2.23% w/v) over heat while stirring. All vials were placed in a 1 liter cylindrical container in two sets (L1, L2). Background was filled with distilled water. To achieve fast multi-parameter acquisition, we combine a single-shot inversion recovery (IR) sequence with a continuous multi-echo radial FLASH readout and incorporate blip gradients between echoes for improved k-space coverage [6] (Fig. 1). To jointly estimate water-specific T1, R2*, B0, and FF maps directly from the acquired k-space data, we model the underlying physical signal and formulate parameter estimation as a non-linear inverse problem. The model explicitly accounts for water and fat specific equilibrium and steady-state signal contributions and for their effective longitudinal relaxation rates. In addition, we consider the 6-peak fat spectrum [7] and field inhomogeneity. The forward model accounts for the radial sampling pattern, coil sensitivities and Fourier transform. The optimization problem is solved iteratively using IRGNM-FISTA [8-11] implemented and performed in BART [12], utilizing Sobolev and ℓ1-wavelet regularization. Water-fat-SPIO data was acquired on a 3T Siemens Magnetom Vida equipped with a 20 channel head coil.

First, we validated the proposed model-based reconstruction on a numerical phantom (BART) (Fig. 2a), covering a wide range of ground-truth values. Comparison of ROI-averaged simulated values to the ground truth shows overall low mean differences (Fig. 2b). In physical phantom studies, reference maps for R2*, FF, and B0 were estimated using model-based reconstruction of steady-state multi-echo data (0.8x0.8x5 mm3) [13]. Steady-state data was extracted from the last 140 excitations of the same acquisition. T1 references were estimated using single-shot IR FLASH with single-echo readout [11]. Figure 3 shows reconstructed maps from one set of vials. To assess accuracy, ROI averaged mean values of reference and the here proposed method were compared. Resulting maps of water-specific T1, R2* and FF are in excellent agreement, as indicated by Pearson correlation coefficient. Differences in B0 maps need further investigation.

To estimate manufacturing accuracy, we compared designed ground truth values to values obtained from our proposed method (Fig. 4, top). Although designed fat-fraction values were achieved adequately, we noticed deviations from the designed values in both R2* and T1. While deviations in R2* can be attributed to varying fat-fractions and its know effect on measured R2* values [5], discrepancy in T1 values can only be explained by manufacturing inaccuracies at this point. To rule out acquisition errors, we additionally performed gold-standard T1 mapping [14] using IR spin-echo water-only excitation acquisitions with varying TIs (TI = 30, 280, 530, 780, 1030, 1280, 1530 ms). We can report excellent agreement between gold-standard T1 maps and our proposed method (see Fig.4, bottom).

We designed and manufactured a simple water-fat-SPIO phantom used towards validating our new proposed method. In our proposed method, we combined a non-linear model-based reconstruction with radial IR multi-echo FLASH acquisition enabling joint estimation of water-specific T1, R2*, FF, and B0 field maps from a single-shot acquisition of four seconds while maintaining high accuracy. Our developed method can potentially improve patient comfort and add valuable diagnostic information while simultaneously rendering multi-parametric quantitative MRI more feasible for clinical applications.
Vitali TELEZKI (Göttingen, Germany), Daniel MACKNER, Nick SCHOLAND, Zhengguo TAN, Moritz BLUMENTHAL, Philip SCHATEN, Xiaoqing WANG, Martin UECKER
11:00 - 12:30 #46108 - PG356 Effect of patient orientation on ultimate intrinsic SNR in the torso of a realistic body model.
PG356 Effect of patient orientation on ultimate intrinsic SNR in the torso of a realistic body model.

In MRI scans using a closed-bore MRI system, patients are put into the bore either head-first or feet-first, mainly based on the anatomical region being imaged, ensuring that the target area is centered and that patient comfort is maximized. Beyond these practical considerations, the interplay between the B0 field orientation (or equivalently, patient orientation) and the RF system may introduce variations in the imaging process. In this work, we investigated the influence of patient orientation on ultimate intrinsic SNR (uiSNR)[1], which is an intrinsic feature of RF reception unaffected by receive array design.

Realistic body model: The Duke body model from the Virtual Family (IT’IS Foundation)[2] was used for electromagnetic simulations. Frequency-dependent properties[3] were assigned to different tissues in the body model. B0 strengths of 1.5 T, 3 T, 7 T, 10.5 T, and 14 T were included in the simulations. Additionally, a homogeneous body model with average tissue properties and a mirror-symmetric body model were constructed from the Duke model and assigned tissue properties at 7 T. All body models were truncated from the neck to the thighs to reduce the computational burden (Figure 1). Basis set construction: For each simulation, an electromagnetic basis set containing 3000 random bases was generated following the method of Guerin et al.[4]. Each basis contains an electric field and its corresponding magnetic field. uiSNR calculation: The uiSNR was calculated in each voxel using the electromagnetic basis set [5], which involved computing B1-, the negatively rotating component of the magnetic field in the plane perpendicular to B0. The uiSNR maps were computed for two opposite B0 orientations (head-first and feet-first) and compared by calculating ratio maps.

Figure 2 shows the uiSNR ratio maps between the two opposite B0 orientations in the original, the homogeneous, and the mirror-symmetric Duke model at 7 T. In the homogeneous model, regions where the uiSNR increases or decreases when B0 is reversed can be observed. These regions are relatively large and mainly appear in areas where adjacent body parts are separated by air. In the original heterogeneous model, regions with increased or decreased uiSNR appear on a smaller geometrical scale. In the mirror-symmetric model, regions with increased and decreased uiSNR always appear symmetrically in pairs. In the original model, similar patterns can also be observed to some extent in regions that are roughly symmetric. Figure 3 shows the uiSNR ratio maps of the Duke model at different B0 field strengths. From 1.5 T to 14 T, the extent of variation between the two B0 orientations increases, which can also be observed from the histogram of uiSNR ratio (Figure 4). At 14 T, the difference in uiSNR caused by the two opposite B0 orientations can be as large as 50%.

Model limitations: With the random basis set used in this work, convergence of SNR towards uiSNR was only achieved in regions deeper than about 3 cm from the body surface. Effect of B0 orientation: Differences between uiSNR maps obtained with two opposite B0 orientations are a combined result of overall shape and heterogeneous local structures. For some positions in the body, there may exist a preferred orientation of B0. As ultra-high-field MRI exploits higher field strengths, this effect may become more relevant in the future as a limiting or boosting factor of image quality. Transmission vs. reception: Transmission and reception are intrinsically linked, representing complementary aspects of the same physical process. If a position has a preferred orientation for signal reception due to global and local geometries, the B0 orientation may offer an advantage or disadvantage for excitation.

In this work, we illustrated an interesting effect that patient orientation (or equivalently, B0 orientation) may influence the uiSNR in a realistic human body model. The extent of this effect increases with B0 strength. B0 orientation is therefore proposed as an imaging factor to be considered as B0 strength increases into the ultra-high-field range.
Yuting WANG (Heidelberg, Germany), Markus MAY, Marcel GRATZ, Mark LADD, Stephan ORZADA
11:00 - 12:30 #47705 - PG357 RYAN: quality assessment tool for multicenter fMRI data of the FUNSTAR phantom.
PG357 RYAN: quality assessment tool for multicenter fMRI data of the FUNSTAR phantom.

Quality assurance (QA) is essential to ensure consistent performance of MRI scanners, especially in multicenter studies where inter-scanner variability can impact data comparability [1,2]. Using phantom-based acquisitions allows for quantitative MRI (qMRI) assessment without biological confounds, enabling effective monitoring of scanner stability and temporal drifts [3,4]. To support QA harmonization, the Italian Ministry of Health established the RIN – Neuroimaging Network [5], comprising 23 Scientific Institutes of Hospitalization and Care (IRCCSs) working on unified protocols for acquiring, processing, and sharing qMRI data. Functional MRI (fMRI), being highly sensitive to signal fluctuations, particularly benefits from reliable QA [6,2]. In this context, we present a harmonized, multivendor QA toolbox aimed at assessing intra-site stability and inter-site reproducibility through phantom data, producing automated visual and numerical reports to support reproducibility across centers.

A QA study was conducted across 16 Italian RIN centers equipped with 3T scanners from three vendors. From 2017 to 2022, centers performed monthly scans using the FUNSTAR phantom [7] and a standardized fMRI protocol. The open-source Python-based RYAN toolbox [8,9] was used to analyze key QA metrics—SNR, SFNR, signal drift, Weisskoff radius of decorrelation (RDC), and even-odd variance—across central and peripheral ROIs. Metric trends were monitored over time and statistically compared across vendors and centers. Acceptance thresholds were defined for each metric and visualized using Bland-Altman plots [10]. Spike detection was performed [11], and intraclass correlation coefficients (ICCs) were computed to assess scanner reliability [12,13].

Metrics were visualized via boxplots, barplots, and coefficient of variation (CV) analyses. SNR and SNRt showed no central vs peripheral ROI differences, but significant inter-center variability [14,15], with outliers affecting SNR results (Fig.1,Fig.2a,Fig.2b,Fig.3a,Fig.3b). SFNR had high ICCs centrally (>0.9) but lower peripherally (Fig.2c), with vendor-dependent effects [16] (Fig.1a). Signal drift varied across ROIs and vendors, with moderate ICCs (0.3–0.4), especially in peripheral regions [17,18] (Fig.1,Fig.3c). Weisskoff RDCs correlated well across 2D and 3D planes [19] (Fig.1c,Fig.4a, Fig.4b, Fig.4c); the 3D method proved useful for detecting inter-slice correlated noise [20] (Fig.2e). Even-odd variance had low variability (ICC 0.7–0.8) (Fig.2f,Fig.3f)), though vendor-related differences were noted(Fig.1a). Over five years of longitudinal tracking, SNR, SNRt, and signal drift exhibited greater variability, whereas SFNR, RDCs, and even-odd variance remained comparatively stable [21] (Fig.4d). Spike and Weisskoff plots helped assess signal stability, and most centers remained within QA thresholds with minimal exceptions.

This study introduces the RIN-Neuroimaging Network’s approach to standardize fMRI data acquisition across different vendors and sites using a common QA protocol and phantom. Key metrics—SNR, SFNR, drift, RDC, and even-odd variance—were used to evaluate performance variability. Peripheral ROIs showed more instability, especially for drift, likely due to gradient heating effects [22,23]. The Weisskoff RDC 3D extension helped identify slice-related noise [20]. Even-odd variance correlated inversely with RDC, supporting its role in quick noise estimation. ICC values confirmed high reproducibility, particularly for SFNR central and even-odd metrics [13]. Most centers operated within set thresholds, supporting scanner stability and effective QA implementation.

We developed the RYAN toolbox as part of a three-year QA program in the RIN-Neuroimaging Network [5]. Monthly assessments of key metrics (SNR, SFNR, drift, RDC, even-odd) provided insights into scanner performance. RYAN runs automatically on the shared FUNSTAR database and delivers detailed reports for each center, allowing vendors to be notified in case of deviations. It visualizes signal time-courses, spikes, and threshold violations, using acceptance ranges derived from 16 scanners across three vendors. Regular QA tracking helps identify hardware/software-related changes affecting scanner performance. Future developments will include enhanced SNR estimation using 32 background ROIs and a user-friendly GUI for on-site QA checks.
Antonio NAPOLITANO (Rome, Italy), Chiara PARRILLO, Luca CAIRONE, Camilla ROSSI ESPAGNET, Lorenzo FIGÀ-TALAMANCA, Anna NIGRI, Fulvia PALESI, Alberto REDOLFI, Silvia DE FRANCESCO, Laura BIAGI, Giovanni SAVINI, Michela TOSETTI, Claudia A. M. GANDINI WHEELER-KINGSHOTT
11:00 - 12:30 #47856 - PG358 Can Radiomics Capture Diffusion Behaviour? A Phantom-Based Proof of Concept.
PG358 Can Radiomics Capture Diffusion Behaviour? A Phantom-Based Proof of Concept.

Tissue microstructure plays a central role in both clinical and neuroscience research. Currently, Diffusion Tensor Imaging (DTI) is the gold standard for the non-invasive assessment of brain white matter architecture. Despite so, conventional DTI metrics may not fully exploit the textural information embedded in diffusion-weighted images. Radiomics, a quantitative imaging approach, offers a powerful framework for extracting high-dimensional features that characterize image heterogeneity and complexity [1]. As a proof of concept, in this work we demonstrate that radiomic features can describe diffusion properties using a reference phantom specifically designed to simulate microscopic diffusion anisotropy on clinical MRI systems [2, 3].

The analysed phantom presented two concentric NMR-tubes, with inner and outer diameters of 5 mm and 10 mm, respectively. The central tube was filled with a reverse hexagonal-type liquid crystal, consisting of nanometre-scale water channels embedded within a continuous matrix of detergent and hydrocarbon, while the outer one was filled with a polymer solution. To randomize the orientation of the liquid crystal’s domains the sample was initially melted and, subsequently, domains alignment along a single direction was induced by exposing the phantom to an 11.7 T magnetic field for seven days. A total of 110 phantom acquisitions were obtained at evenly spaced time intervals from which multiple diffusion maps were computed, including Fractional Anisotropy (FA), Micro-Fractional Anisotropy (µFA), Mean Diffusivity (MD_xx, MD_yy, MD_zz), mean Isotropic Diffusivity (D_iso), and mean squared normalized Anisotropy (D_Δ^2) [4]. Five regions of interest (ROIs) were segmented using a threshold-supervised algorithm: the pure liquid crystal region (LQ), the pure polymer region (POL), and an intermediate zone (Mix) that includes contributions from both. In addition, two composite regions were defined: LQmix, obtained by merging LQ and Mix; and POLmix, obtained by merging Mix and POL. After pre-processing, 98 radiomic features were extracted from each diffusion metric–ROI combination using PyRadiomics [5]. Features statistically associated with liquid crystal domains alignment were identified using Spearman’s rank correlation coefficient (ρ), with significance defined as p-value < 0.01 after Bonferroni correction for multiple comparisons.

A total of 3430 feature-metric-ROI combinations were analysed. Among these, 1723 resulted to be significantly related with liquid crystal orientation. Of these, 867 features showed a strong correlation (|ρ| ≥ 0.7), while 856 demonstrated a moderate correlation (0.3 < |ρ| < 0.7). Strongly related features were predominantly derived from the LQmix region (279/867), Mix region (222/867) and LQ (202/867) pure region. In contrast, the 60% of features not related with the alignment were associated with POL and POLmix regions. Considering the MRI metrics, strongly related features were from the majority obtained from FA (24%), D_Δ^2 (20%), MD_zz (20%), followed by MD_xx (11%), MD_yy (10%), D_iso (9%), and µFA (6%).

Among the pure regions, LQ was expected to exhibit the highest significant correlation with domains alignment, as it was experimentally designed to display anisotropic behaviour. Conversely, the POL region showed isotropic diffusion across all time-spaced acquisitions, as reflected by the large number of features unrelated to domains' alignment. Focusing on MRI metrics, FA and D_Δ^2 were most frequently associated with alignment. FA quantifies the degree of diffusion anisotropy at the voxel level, while D_Δ^2 describes the anisotropic component of the diffusion tensor. Focusing on MD, the alignment effect was more evident in MD_zz than in MD_yy, MD_xx, reflecting sample geometry. Lastly, µFA showed the lowest number of strongly related features as it characterizes the anisotropy of the underlying microscopic structure but not it’s organization on the voxel level. A visual comparison of the grey-level distributions between the first and final acquisitions clearly reveals a substantial variation in the FA maps: mean FA values increased from 0.11 ± 0.02—indicative of near-isotropic diffusion—to 0.87 ± 0.03, reflecting a marked enhancement in anisotropy caused by the domain’s alignment. In contrast, the µFA maps exhibited minor variation, with the mean value remaining nearly constant (from 0.97 ± 0.01 to 0.99 ± 0.00), in line with theoretical expectations.

In this work, we aimed to assess the feasibility of radiomic analysis of diffusion MRI metrics using a well-characterized phantom. The results of the statistical analysis of radiomic features were largely consistent with the expected physical behaviour of the system, demonstrating that radiomics can effectively capture changes in the context of diffusion MRI.
Agnese ROBUSTELLI TEST (Pavia, Italy), Francesca BRERO, Manuel MARIANI, Alessandro LASCIALFARI, Daniel TOPGAARD
11:00 - 12:30 #47911 - PG359 Patient-specific quantitative MR twins for synthetic previews and protocol planning.
PG359 Patient-specific quantitative MR twins for synthetic previews and protocol planning.

Subject-specific quantitative maps can be obtained using conventional quantitative MRI or MR fingerprinting. Our approach uses a fast, low-resolution quantification scan in combination with an artificial neural network. Synthetic MRI contrasts are simulated using the derived quantitative maps (PD, T1, T2, T2’, D, dB0, B1) using an approach known as synthetic imaging11,12. We used the subject-specific synthetic images for the purpose of contrast previews and slice planning. In this abstract we put such synthetic MRI to the test by comparing against real scans of the same sequences using suitable metrics.

The quantification sequence was based on the prepared snapshot FLASH as proposed by Weinmüller1 et al., which we extended to whole brain coverage (2x2x4 mm3, GRAPPA6 - 6) and acquisition-time of 8 mins, while acceleration to 4 mins is possible - data not shown. The series of acquired images with PD-, T1-, T2-, T2’-, D-, dB0-, and B1+preparation is then quantified using a 3D convolution neural network trained with simulated images for same preparations using brainweb2 phantoms All sequences were programmed in the Pulseq standard9, which then directly used in the scanner as well as the simulation made the comparisons possible. Three typical clinical protocols chosen were the following: 1. Steady-state FLASH3 (as used in Localizer scans or SWI, with TE=1.37ms, TR=3.15ms, FA=8 deg, 1.6x1.6x1.6 mm resolution, 2. MPRAGE4 with TE=3.2ms, TR=8.16ms, FA=9 deg, TI=9ms, resolution=2 x2 x4 mm, and 3. T2w-TSE5 TI=1.11ms,TR=2.53ms, FA=90 deg ,resolution 2x2x4 mm. These protocols along with quantitative scan were performed on the volunteers at a 3T MAGNETOM Cima.X Scanner (Siemens Healthineers AG, Forchheim, Germany) after well informed written consent. Quantification maps of a volunteer was obtained with Inference time of 2s in seconds in Nvidia-RTX A4000 16 Gb GPU. For fast synthetic previews we used the Phase Distribution Graph (PDG) simulation7. Simulation time of these sequence on GPU for 3D Steady-state FLASH: 732s, 2D-MPRAGE: 128 s,2D- T2w-TSE:62s, both simulated and measured data was processed with the same reconstruction pipeline. Images were windowed to reflect similar GM/WM/CSF contrast. Since the experiment is validated with synthetic and real data of the same subject, we used structural similarity10 of equivalent 2D slices of interpolated resolution without any form of co-registration. MRI vendors offer automatic slice planning algorithms based on a 3D localizer overview scan of the scanned anatomy. In a second experiment, we evaluate the performance of the vendor’s automatic slice planning algorithm on simulated localizer images. A confidence score derived by the algorithm indicates the quality of the predicted slice planning.

Figure 1-3 show the visual comparison of our synthetic images based on the 2x2x4 mm quantification, together with the real acquisition of the same sequences, i.e. steady-state FLASH (Fig 1), MPRAGE (Fig 2), T2w-TSE (Fig 3). The volumetric confidence for Brain and Orbital part of 3D volume has least uncertainty than the real measurement as shown in the Table 1.

Due to trade of in acquisition time our previews suffer from low resolution and anisotropic resolution, which leads to partial volume blurring effects prevalent in both sagittal and transversal views. Apart from that, the contrast features of all sequences were replicated evidently. large deviations are visible in the fat signals of the FLASH steady state, which we traced back to T1 mismatch in the quantification. Image metrics (at the bottom of the Fig(1-3)), and volumetric confidence values reveals that synthetic images are close to real measurement, bringing us a step closer to potential preview and patient-specific process planning.

We showed that within the existing framework of MR-zero8, patient-specific synthetic preview is possible with reasonable (scan, inference and simulation) time and realistic contrast. Resolution and scan time of quantification can still be optimized with further accelerations. While similar approaches based on MR fingerprinting exist11,12, this work validates the generated quantitative digital twins for fast synthetic preview of digital twin of clinical sequences. In principle, synthetic preview can also be used with any other quantification method, if the complete list of parameters are provided.
Deepak Charles CHELLAPANDIAN (Erlangen, Germany), Simon WEINMÜLLER, Fabian WAGNER, Rainer SCHNEIDER, Jonathan ENDRES, Moritz ZAISS
11:00 - 12:30 #47960 - PG360 Longitudinal Assessment of Polymer Gel Phantom Stability Monitoring Using MRI Radiomic Texture Features.
PG360 Longitudinal Assessment of Polymer Gel Phantom Stability Monitoring Using MRI Radiomic Texture Features.

Radiomics offers a non-invasive tool for assessing changes in digital images by extracting quantitative features, which can be used with other available information to assist decision-making(1). Radiomics has been used in studies such as survival and recurrence estimation for many tumours(2,3). The phantoms have been used to assess the MRI imaging chain's performance and thus have found applicability in assessing radiomic feature reproducibility and stability due to the ease of multiple imaging. The stability of radiomics features has been shown to depend on various factors, including changes within the material under study. Heterogeneous phantoms comprising various tissue-equivalent materials to provide realistic anatomy and internal tissue structures have become attractive in assessing the stability of radiomic features under various conditions. Heterogeneous phantoms comprising various tissue-equivalent materials to provide realistic anatomy and internal tissue structures have become attractive in assessing the stability of radiomic features under various conditions. Several phantoms have been proposed in the literature to assess the stability of the radiomic features, including fruits, vegetables, and 3d printed objects, among others(4–6). The selection of a phantom to use depends on the study's objective; for example, longitudinal studies require a phantom that does not change or deteriorate with time, as this will affect the radiomics feature(5). In this study, a polymer gel phantom was chosen as a possible candidate for use in MRI radiomic feature analysis. The gel phantom has the advantage of other objects being inserted inside it without losing its integrity(7). The polymer gel phantom's stability must be determined before it can be considered. The study aims to determine the stability over time of polymer gel phantom using radiomic texture features.

A gel phantom was constructed by using the (7) approach by using Carbopol-974p powder combined with distilled water, Mn(NO3)2, and NaOH, and the mixture poured into a test tube. A jig was made to have five test tubes be suspended in air as shown in figure 1. The phantom was imaged (3.0T Phillips Ingenia) bi-weekly over a period of 12 months and pulse sequence, T2w TSE was used and the acquisition parameter is shown in Table 1. A radiomic pipeline suggested by IBIS was used for feature extraction, and the PyRadiomics software of 3D Slicer was used for segmentation and feature extraction. Pre-processing normalisation was performed using a z-score on all images, and features were determined for the segmented volumes for each acquisition. For each MRI image, a total of 104 features were extracted: shape features, first-order features and second-order features. The second features are further divided into: gray level co-occurrence matrix (GLCM), gray level dependence matrix (GLDM), gray level size zone matrix (GLSZM), gray level run length matrix (GLRLM), and neighbouring gray tone difference matrix (NGTDM). Coefficient of Variance (CV) was used to determine texture features useful for further analysis and the threshold was <10%.

Preliminary results indicated that the 5 texture features of GLSZM showed repeatability over time as shown in table 2. While most of the shape features provided had the best CV values i.e <10%, they provide no information about the stability of the gel phantom. The GLCM and first-order each had one feature that was repeatable on all test tubes. The CV values for GLRLM and NGTDM features for all the test tubes were greater than 10% indicating they might no be useful in this case.

Preliminary results indicated that the 7 texture features of GLSZM, showed no significant difference over time, while the shape feature provided no additional information about the stability of the gel phantom. The varying stability of all first order and second order features measured might be underestimated. Since the study is ongoing, assessment of other pulse sequences results will be added.

This work establishes the acceptability of polymer gel phantom as a candidate for use as a radiomic feature stable phantom, when assessment of the identified texture features. Future studies will validate the findings with other pulse sequences.
Modisenyane S MONGANE (Bloemfontein, South Africa), Sussan N ACHO, Joyce M TSOKA-GWEGWENI
11:00 - 12:30 #47633 - PG361 Evaluating the stability and mri relaxation properties of alginate for breast phantom development.
PG361 Evaluating the stability and mri relaxation properties of alginate for breast phantom development.

Alginate hydrogels present potential for application in anthropomorphic tissue-mimicking phantoms due to their tuneable physical and magnetic properties [1]. Their capability to mimic tissue-relevant relaxation times makes them well-suited for applications in quantitative magnetic resonance imaging (qMRI), where inter-site reproducibility and consistency are essential for reliable biomarker validation and early cancer detection [2]. Despite their widespread use in biomedical applications [3], the long-term physical and functional stability of alginate-based phantoms needs to be fully characterized. This study aims to quantitatively assess the temporal stability of alginate breast phantoms by monitoring changes in MRI parameters, including T₁ and T₂ relaxation times, over an initial 28-day period. This work addresses the crucial need for standardized and reproducible qMRI calibration materials, especially in breast imaging applications, where reliable relaxation times reference values are needed for quantitative lesion assessment.

The prototype phantom consisted of twelve 15 mL Falcon tubes filled with 2% (w/v) alginate in saline (1.17% NaCl). To achieve target breast tissue relaxation times (Fig. 4) [4], two doping formulations were used: 0.42 mM NiCl₂ (for T₁ modulation) and 1.14 mM MnCl₂ (for T₂ contrast) to mimic fibroglandular tissue (FGT), and 3.10 mM NiCl₂ (T₁) and 1.13 mM MnCl₂ (T₂) to mimic adipose tissue characteristics. MRI data of the phantom (Fig. 1) were acquired on days 0, 14, and 28 using spin echo sequences (T₁: TR = 500–3500 ms, TE = 7 ms; T₂: TR = 500 ms, TE = 7–350 ms) on a 3 T Siemens Prisma. A freshly prepared phantom with the same composition was scanned at each timepoint to assess formulation reliability and temporal stability. Phantoms were equilibrated at scanner room temperature (19.2–20.2 °C) for at least 24 hours prior to imaging. Relaxation times were estimated using saturation recovery (T₁) and mono-exponential decay (T₂) models, with B₁ correction applied to account for RF inhomogeneity. Phantom reliability was assessed using the coefficient of variation (CV), whilst gel stability was evaluated using independent two-sample t-tests comparing days 0 and 28.

Phantom reliability was high across sessions (days 0, 14, and 28), with T₁ and T₂ measurements demonstrating strong longitudinal consistency for both FGT- and adipose-mimicking phantoms (Fig. 2), particularly in the FGT phantoms (CV = 0.28%). Regarding phantom stability, a significant increase in T₁ was observed in adipose-mimicking phantoms (p < 0.05), while no significant change was detected in the FGT phantoms (Fig. 3). T₂ values declined in both phantom types (Δ = −10.44 ± 15.68% and −9.83 ± 12.67%), though these changes were not statistically significant.

The phantoms demonstrated reliability, making them suitable tools for longitudinal qMRI assessment. The T₁ increase observed in adipose-mimicking phantoms likely reflects dopant redistribution or mild oxidation [5], whereas the greater stability (Δ = 6.66 ± 4.54%) of FGT-mimicking phantoms suggests that lower NiCl₂ content may inhibit such effects. T₂ reductions may reflect gel compaction or altered water mobility during aging [6], though high variability in standard deviation limits interpretation. The stable B₁ correction and narrow temperature range suggests that observed relaxation changes likely reflect intrinsic material behaviour rather than technical-induced variability. Despite relaxation times being systematically elevated (~13–15%) relative to literature values (Fig. 4) [3], their internal consistency across phantom types supports their use in comparative or calibration-focused qMRI studies. These findings highlight the potential of alginate-based phantoms as low-cost, tuneable models for advancing qMRI, by providing a means to assess the reliability of MRI relaxation times that mimic those of breast tissue. However, the relatively short 28-day monitoring period may underestimate long-term degradation, and variability in T₂ measurements suggests that future work should investigate strategies to improve gel uniformity and chemical stability. Additionally, exploring a broader range of dopants and storage conditions could further refine phantom stability and extend applicability to a wider set of imaging contexts.

This study confirms that alginate-based breast phantoms provide reproducible qMRI measurements over short timescales while revealing sensitivity to material aging, particularly in T₁ behaviour. These results underscore the need for periodic reassessment of phantom properties in longitudinal or multi-centre qMRI studies to ensure sustained measurement reliability. Continued refinement of phantom composition will be key to enhancing long-term stability for use in standardizing breast imaging protocols and quantitative biomarker development.
Klara MIŠAK (London, United Kingdom), Agnieszka SIERHEJ, Chris A. CLARK, Simon WALKER-SAMUEL, Matthew CASHMORE
11:00 - 12:30 #47872 - PG362 Evaluation of the NEXI Model of gray matter in biophysically realistic brain substrates via Monte Carlo simulations.
PG362 Evaluation of the NEXI Model of gray matter in biophysically realistic brain substrates via Monte Carlo simulations.

Evaluating and validating biophysical models is crucial for accurately characterizing tissue microstructure via diffusion MRI. Neurite Exchange Imaging (NEXI) is a two-compartment model of brain gray matter (GM) accounting for water exchange between isotropically oriented neurites and extracellular space [1-3]. NEXI is based on the analytical Kärger model of barrier-limited exchange between two Gaussian compartments. Although widely used, NEXI has not yet been evaluated in realistic numerical substrates of tortuous and beaded neurites, with varying levels of orientation dispersion and membrane permeability, which may challenge the Kärger assumptions. Indeed, previous simulation work either used the same analytical forward model for generating signals as is used for fitting the signals [1,2], or performed intra-cellular simulations in realistic substrates only [3]. Here, we assess NEXI's performance using Monte Carlo (MC) simulations of diffusion in realistic GM substrates with packed tortuous and beaded neurites.

Three substrates with orientation dispersion targets ☰ c₂ = 0.4, 0.6, and 0.8 were generated using the CATERPillar toolbox [4]. For each substrate neurites were grown in a (100 µm)³ voxel, using overlapping spheres with both beading (amplitude = 0.3 × initial radius) and tortuosity (ε = 0.4, standard deviation of the distribution of the 3D placement of the spheres) (Fig. 1). MC simulations used intra- and extracellular diffusivities of 2 and 1 µm²/ms, respectively; 0.8 µs step duration; 10⁵ random walkers; and no permeability. For the highly dispersed substrate (c₂ = 0.4), simulations were run with permeability values of 0, 10, 20, and 30 µm/s [5-7]. Each simulation was repeated 3 times for reproducibility. Diffusion-weighted signals were generated for 5 shells: 1 (12 dirs), 2 (16), 3.5 (24), 5 (30), and 7 (40) ms/µm², at diffusion times ∆=15, 26, and 38 ms, and diffusion gradient duration δ=4.5 ms to approximate the narrow pulse condition. T2 relaxation was ignored. NEXI was fitted using the Swiss Knife Toolbox (https://github.com/Mic-map/graymatter_swissknife) [1,2,8], fixing the exchange time (tex) to an arbitrarily high value in impermeable substrates. For each ∆, Diffusion Kurtosis tensor (DKI) (up to b=3 ms/µm²) and, for the impermeable substrates, the Standard Model of white matter (SMI) [9] were also fitted.

Resulting substrates had neurite volume fractions f=0.57, 0.56, and 0.55, and final c₂​ = 0.42, 0.64, and 0.73, matching the targets c₂​ = 0.4, 0.6, and 0.8, respectively (Fig. 1). Impermeable substrates of varying c₂: NEXI intra- (D¡,-41%) and extracellular diffusivities (De, -33%) were lower than the nominal (free) diffusivity, which is expected due to the effects of hindered diffusion in the extracellular space and along the neurites (irregularities from beading and tortuosity) (Fig. 2a). De was also lower in high-dispersion substrates as expected. The D¡ estimates were consistent with SMI estimates of intracellular diffusivity (Da) (Fig. 2c). NEXI slightly overestimated the intra-neurite volume fraction (f, +12%). Mean diffusivity (MD) and mean kurtosis (MK) showed some time-dependence in those substrates due neurite irregularities (Fig. 2b). Da from SMI (Fig. 2c) also displayed some time dependence, particularly for lower dispersion substrates. Permeable substrates: NEXI estimated tex between 10-31 ms (Fig. 3a), matching the theoretical expected exchange times given each permeability and cylinder radius [1,10]. Other NEXI parameters remained stable as a function of permeability. MK showed more marked time-dependence, increasing with permeability, while MD time-dependence was not affected (Fig. 3b).

Realistic neurite geometry yielded some time-dependence in MD, suggesting some contribution of structural disorder in this diffusion time range. SMI-derived Da scaled with 1/√∆, a hallmark of short-range disorder [11]. However, most time dependence in MK was found in the presence of permeability, consistent with the expected dominant influence of intercompartmental exchange [1,12]. Importantly, NEXI compartment diffusivity and neurite fraction estimates remained stable across permeability values, showcasing its ability to separate contributions from each compartment and their exchange. Finally, NEXI-derived exchange times aligned very well with the theoretical expectations.

By generating synthetic diffusion signals under controlled microstructural conditions, we evaluated the performance of NEXI to estimate key microstructural features of the GM brain tissue. Our findings suggest that NEXI can very reliably estimate exchange time across a range of environments with different permeability, as well as dissociate other model parameters from the exchange. Future work will focus on the influence of realistic noise levels and on the inclusion of cell bodies in the substrates.
Rita OLIVEIRA (Lausanne, Switzerland), Jasmine NGUYEN-DUC, Ileana JELESCU
11:00 - 12:30 #47623 - PG363 Effect of pH and temperature changes on the 23Na TQ Signal in agarose samples.
PG363 Effect of pH and temperature changes on the 23Na TQ Signal in agarose samples.

Slow interactions between sodium nuclei and surrounding macromolecules generate a triple quantum (TQ) signal, which can serve as a biomarker for cell viability [1–3]. Agarose, a polysaccharide often used in phantom experiments, forms a solid gel after cooling, trapping water in pores ranging from sub-nanometer to hundreds of nanometers in size [4]. Low-concentration agarose induces sodium biexponential relaxation, on timescales like those in vivo, making it a suitable model system for the in vivo sodium TQ signal [5]. pH and temperature changes both alter sodium’s molecular environment. Whilst the influence of pH changes in protein-sodium interactions have been previously investigated [6], temperature and pH studies in the ubiquitously used agarose remain scarce. Hence, this study investigates the influence of pH and temperature on sodium transverse relaxation times and the TQ/SQ ratio in agarose samples.

Measurements were performed using a 9.4T preclinical MRI (Bruker Biospec 94/20) with a linear Bruker 1H/23Na volume coil. For the pH measurements, 154 mmol NaCl solutions with 12 different pH values were prepared by adding either 154 mmol NaOH or citric acid. The final pH was measured with a VOLTCRAFT PH-100 ATC device (Conrad Electronic SE, Germany). The final pH values were: 2.48, 3.62, 4.65, 5, 6.23, 8.05, 10.10, 11.27, 11.30, 11.56, 11.60, 11.89. A 2% w/v agarose phantom was prepared with the final solution. For the temperature measurements, 2% and 4% w/v agarose phantoms with 154 mmol NaCl were filled in a cylindrical flask (2.7 cm diameter, 4 cm height). The phantoms were heated using a flexible animal heat bath around the area for uniform heating, with temperature continuously monitored via a fiber-optic sensor in the center of the phantom. The signal was acquired after stabilizing the heat bath, with no temperature change exceeding 0.2°C within 5 minutes. Temperature was raised in 5 steps from 19°C to 43°C, then the phantom was allowed to cool and two subsequent measurements were performed. A TQ time-proportional phase increment (TQTPPI) pulse sequence was used to simultaneously measure SQ and TQ signals (Fiqure 1). The TQTPPI FID was non-linearly fitted using [5]: $$ Y(t) = \sin(\omega t + \phi_1) \cdot (A_{SQ,1}e^{-t/T_{2f}+A_{SQ,2}e^{-t/T_{2s}})+A_{TQ}\sin(3\omega t + \phi_2)\cdot (e^{-t/T_{2s}}-e^{-t/T_{2f}}) + DC, (1)$$ where $Y(t)$ is the TQTPPI FID amplitude, $A_{SQ,i}/A_{TQ}$ are the SQ and TQ amplitudes, respectively. $T_{2f}$ and $T_{2s}$ are the corresponding fast and slow transverse relaxation times. Sequence parameters were: $T_R = 400$ms, $\delta t_{evo}=200$us and $t_{mix}=125-135$us with a phase increment of 45° and 520 phase steps.

Fig. 2 shows the TQ/SQ ratio versus pH (left) and T2 relaxation times (right), with error bars representing the 95% confidence interval. The TQ/SQ ratio increased slightly at pH 5, plateaued at ~19% between pH 5 and 9, and rised steeply above 50% at higher pH. After a pH of 11.60 the curve started to flatten, suggesting sigmoidal behavior. The relaxation times showed an inverse trend. The slow component plateaued between 41–44 ms up to pH 10, while the fast component decreased from 16 to 9 ms by pH 10. Both dropped sharply after pH 10, reaching 0.37 ms and 20 ms at pH 11.89. Fig. 3 depicts the temperature dependence of the TQ/SQ ratio and relaxation rates. Both relaxation times correlate positively with temperature, confirmed by R²adj = 0.99 for all fits. The TQ/SQ ratio decreased similarly in both samples with temperature. After cooling, it was systematically lower than expected, unlike the relaxation times, which remained unchanged.

The behaviour of the TQ/SQ ratio in fig. 2 is driven by hydrogen bonding between hydroxyl groups [4]. At low pH, abundant +H ions inhibit bond formation, reducing negatively charged groups for ²³Na interaction and lowering the TQ/SQ ratio. Reduced bonding may also result in larger pores, decreasing the NaCl interaction surface and further lowering the ratio. At higher pH, more bonding enhances ²³Na-macromolecule interaction, raising the TQ/SQ ratio. The decreased relaxation times align with stronger bonding, which increases ²³Na interaction. For the temperature data, changes in relaxation times were likely caused by increased molecular motion’s influence on quadrupole interactions [7], not agarose structural changes, as its melting point is 65 °C. The systematic drop in TQ/SQ ratio after cooling, despite stable relaxation times, suggests possible sample changes detectable by this ratio, requiring further investigation, especially in protein samples.

The sodium TQ/SQ ratio exhibited strong pH dependence for values above 9, while remaining stable at physiological pH. Additionally, the study found a linear relationship between temperature and both relaxation times, as well as the TQ/SQ ratio. Both results confirm the sensitivity of the TQ signal on its environment and using the TQ/SQ ratio on is able to quantify this dependence.
Dominik ZEHENDER (Heidelberg, Germany), Valentin JOST, Frank ZÖLLNER, Lothar SCHAD
Poster hall
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LUNCH SYMPOSIUM

Espace Vieux-Port
LUNCH BREAK & LUNCH SYMPOSIUM
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ET1-4 - Impactful research publishing

Chairpersons: Patrick COZZONE (Professor) (Chairperson, Marseille, France), Sophie SCHAUMAN (Chairperson, Stockholm, Sweden)
ET1: Cycle of Research
14:00 - 15:30 Factors to consider when selecting a journal. Jonathan  MCNULTY (Keynote Speaker, Dublin, Ireland)
14:00 - 15:30 My top tips in writing a high quality 'clinical' manuscript. Paola CLAUSER (Keynote Speaker, Vienna, Austria)
14:00 - 15:30 My top tips in writing a high quality 'methods' manuscript. David NORRIS (Prof) (Keynote Speaker, Nijmegen, The Netherlands)
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FT3-2 - Quantitative MRI and its confoundings

Chairpersons: Roy HAAST (PhD) (Chairperson, Marseille, France), Sina STRAUB (Senior Researcher) (Chairperson, Bern, Switzerland)
FT3: Cycle of Quality
14:00 - 15:30 Quality assessment of quantitative MRI. Sebastian WEINGÄRTNER (Keynote Speaker, Delft, The Netherlands)
14:00 - 15:30 Quantitative MRI and its confoundings. Siawoosh MOHAMMADI (Head of Microstructure MRI Group) (Keynote Speaker, Lübeck, Germany)
14:00 - 15:30 Use of quantitative MRI in a clinical populations. Amy MCDOWELL (Keynote Speaker, London, United Kingdom)
Salle Major

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FT2 LT - Translational MRI
Brain microstructure & Function

Chairpersons: Christoph BIRKL (Chairperson, Innsbruck, Austria), Andreea HERTANU (PhD) (Chairperson, Marseille, France)
14:00 - 14:02 #45824 - PG151 MouseFlow: a pipeline for mouse brain diffusion MRI data, generating tractograms and diffusion metrics with quality controls.
PG151 MouseFlow: a pipeline for mouse brain diffusion MRI data, generating tractograms and diffusion metrics with quality controls.

Diffusion magnetic resonance imaging (dMRI) experiments in rodents offer in-depth insight into the organisation of brain networks and their biological structure. By combining dMRI with complementary approaches such as light sheet microscopy [1] or optical coherence tomography [2], it is possible to create links between biological and functional levels of analysis for translational studies in neuroscience. However, despite the standardisation of dMRI protocols in human research, image processing and data quality assessment in rodents remain heterogeneous. The absence of unified and adapted standards for the processing stages - spatial alignment, sequence-dependent correction, and management of confounding factors - poses challenges for the reproducibility of results. Differences in acquisition parameters accentuate this variability. To address these gaps, we present MouseFlow, an open-source pipeline that standardizes the pre-processing of rodent dMRI data inspired by Tractoflow [3] and VersaFlow [4] and including the Allen Mouse Brain Atlas (AMBA) [5] to extract specific diffusion metrics and bundles based on regions of interest.

MouseFlow only needs dMRI data, including b-values and b-vectors. Table 1 outlines the tested parameters to evaluate the nine-step workflow illustrated in Fig. 1A. It uses Nextflow DSL2 [6] for ease of use, flexibility across profiles, parallelization, and container compatibility. A first recommended quality control step allows validating the data before running MouseFlow (Figure 1.B). MouseFlow pre-processing involves denoising, eddy currents correction, brain mask extraction, N4 bias correction, DTI [7] and fODF [8] reconstructions, and extraction of their respective metrics steps (Figure 1.C). The registration of the AMBA, allows extracting specific anatomical Regions of Interest (ROIs) and obtaining the seeding and tracking maps to reconstruct a whole-brain tractogram [8]. All parameters across the steps can be modified in a JSON configuration file. Depending on the user's input data, different pipeline profiles will autoselect optimised parameters.

MouseFlow provides classical diffusion metrics like the fractional anisotropy (FA) or mean diffusivity (MD) (Figure 2A) as well as advanced fODF-derived measures for each ROI. MouseFlow also includes a tractography module: a seeding mask extracted from AMBA fibre tract ROIs, together with a tracking mask, enables the generation of a whole-brain tractogram (Figure 2B). Specific bundles can then be extracted from this tractogram (Figure 2C), offering detailed insights into white matter organisation. To validate the anatomical accuracy of the extracted tracts, we compared them with ground truth connectivity data from the AMBA (Figure 3). We focused on streamlines passing through the fornix and hippocampal commissure, which encompass the medial septal complex (MS). We selected experiment #100141597 from the AMBA, corresponding to an injection in the left MS, and imported the associated projection map into the subject’s native space. This map was then binarised using our tool m2m [9]. The extracted streamlines were compared to this binarised projection, revealing a strong spatial overlap. As shown in Figure 3, the streamlines intersecting the MS are fully contained within the AMBA connectivity map, indicating that the tracts derived using MouseFlow closely match the expected anatomical projections.

We provide a robust mouse brain dMRI processing and analysis pipeline, specifically designed to meet the unique challenges of dMRI in mice. In preclinical imaging, it is essential to have homogeneous and transparent processing tools to facilitate collaboration between different laboratories. Withith this in mind, MouseFlow provides a solution that enables efficient and intuitive processing of dMRI datasets. This pipeline guarantees the reproducibility of local diffusion tensor measurements (DTI) and fODFs, as well as some tractography results, all without the need for complex installation steps. One of the central objectives of this pipeline is to promote high-performance and reproducible diffusion tractography processing, in line with the principles of open science. By adopting recognised industry standards, MouseFlow is helping to standardise practices and enhance the quality of research in this field.

MouseFlow is the first turnkey solution dedicated to standardising from diffusion MRI data processing to diffusion metrics and tractography for the preclinical imaging community. Initially developed for ex vivo mouse brain analysis, MouseFlow will be soon extended to support in vivo applications. By providing a universal and reproducible dMRI pipeline, MouseFlow aims to enable longitudinal studies and foster the widespread adoption of standardised practices in rodent brain connectivity research.
Elise COSENZA (Bordeaux), Arnaud BORÉ, Alex VALCOURT CARON, Valéry OZENNE, Aurélien TROTIER, Maxime DESCOTEAUX, Sylvain MIRAUX, Laurent PETIT
14:02 - 14:04 #47778 - PG152 Studying cortical lamination in the developing brain with quantitative MRI.
PG152 Studying cortical lamination in the developing brain with quantitative MRI.

Throughout development, the human brain's cortex undergoes profound changes that drive the emergence of various cognitive and sensorimotor skills. Structurally, the cortex organizes into six cytoarchitectonic layers with distinct feedforward and feedback connections. The differentiation of cortical layers is reflected by varying levels of myelin and iron, supporting processes like neural communication, energy production and neurotransmitter regulation[1,2]. The myeloarchitecture and iron distribution of cortical layers vary across brain regions to support specialized functions, making the study of cortical lamination during development crucial for understanding brain structure function interaction[3]. In the newborn brain, myelin and iron levels are low, but they increase dramatically during the lifespan. Flechsig, the originator of the view that myelination correlates with functional maturation, hypothesized that regions more myelinated at birth develop faster postnatally[4]. Iron’s role in shaping functional development was studied by Hallgren and Sourander, who observed a rapid increase in iron in the first two decades, followed by slower growth[5]. However, these findings, based on cross-sectional qualitative assessments of selected regions, were never tested quantitatively and longitudinally across cortical layers and the whole brain. Quantitative MRI (qMRI) revolutionized non-invasive brain imaging, offering biophysical parametric measurements of brain microstructure. Multiparametric mapping (MPM) combines qMRI parameters for whole-brain exploration of myelin, iron and water content, with submillimeter resolution[6]. Cortical lamination has been characterized with qMRI in adults, by sampling MPM measurements from deep white matter to the pial surface, creating cortical profiles[3,7–10]. However, this multiparametric approach has not yet been implemented in infant brains and compared to adults. Thus, the rates of myelination and iron accumulation in infancy and their relation to adult values across cortical depths and functional systems remain largely unexplored. Here, we present an acquisition protocol and data analysis pipeline for laminar MPM in the infant cortex. By comparing infant and adult values we explore layer-dependent microstructural development. In addition, we show the generalizability of our approach by comparing different quantitative parametric methods.

Healthy infants (N=15, 9-15 months old) were scanned on a Siemens 3T Prisma MRI scanner during natural sleep (1 mm isotropic resolution). Adult participants (N=10) were scanned on a Siemens 3T Connectome scanner (0.8 mm isotropic resolution). MPM protocol[11]: 3D multi-echo gradient-echo scans with T1 (FA=21°), PD (FA=6°), and MT (FA=6°) weightings, TR=24 ms, 8 equidistant echoes (TE=2.4–18.4 ms), reduced to 5 for MT-weighting in infants and 6 in adults, BW=488 Hz/Px, FOV=256 mm, 2x2 CAIPI (infants)/ GRAPPA (adults). Spin-echo and stimulated echo (SESTE) images for B1+ mapping [12]. Magnetization-prepared two rapid-acquisition gradient-echo (MP2RAGE): FA=4° & 5°, TI=700 & 2500 ms[13]. Relaxation rates (R1, R2*), magnetization transfer saturation (MTsat), and B1+ maps were calculated using the hMRI toolbox[11]. The cortical surfaces were reconstructed using FreeSurfer based on MP2RAGE in infants (MPRAGE for adults) and registered to MPM.

We generated R1, R2*, and MTsat maps for infants and adults. Figure 1 illustrates the obtained qMRI maps. Figure 2 shows a comparison of qMRI measurements for the whole brain, revealing increases in R1, MTsat, and R2* values with age (32%, 140% & 47% correspondingly in the white-matter). Next, by comparing the cortical profiles in the occipital cortex of two representative subjects, we found parameter-specific changes, suggesting distinct maturation patterns for different microstructural properties. Finally, we compared R1 estimations from MPM and MP2RAGE in the same infant, finding strong agreement, with slightly higher R1 values from MP2RAGE (Fig. 4a). Cortical profiles were similar across R1 methods in infant but distinct from the adult profile (Fig. 4b).

This study demonstrates the feasibility of using qMRI-based MPM to examine cortical microstructural development in infants. While previous studies mapped adult cortical profiles, our work extends this multiparametric analysis to infants, capturing early myelination and iron accumulation across cortical depths for the whole brain. The agreement between MPM and MP2RAGE-derived R1 values supports the robustness of this approach for developmental research. Expanding this framework to larger cohorts could elucidate microstructural development across functional networks.

We presented a qMRI framework for investigating cortical lamination across development, which may greatly enhance our understanding of lifespan changes in myelination, iron accumulation, and their functional relevance.
Shir FILO (Leipzig, Germany), Cheslie KLEIN, Juliane DAMM, Luke EDWARDS, Kerrin PINE, Angela FRIEDERICI, Nikolaus WEISKOPF, Charlotte GROSSE WIESMANN, Evgeniya KIRILINA
14:04 - 14:06 #46883 - PG153 Progress in direct mapping of myelin T1 in ex vivo brain with and without deuteration.
PG153 Progress in direct mapping of myelin T1 in ex vivo brain with and without deuteration.

T1 is an established parameter in quantitative MRI due to its excellent contrast between white matter (WM) and grey matter (GM) and its sensitivity to pathologies [1]. Estimates of the aqueous T1 in WM at 3T span a wide range of 700-1735ms across sequences and signal models [2]. This is attributed to magnetization transfer (MT) between the water and macromolecular (MM) proton pools [3-6]. MT effects depend on the inherent T1 times of the pools as well as their magnetization following RF pulsing and thus sequence parameters [7,8]. To obtain direct access to myelin T1 and probe how MT affects T1 in different pools, variable flip angle (VFA) short-T2 MRI was used to directly measure the T1 of myelin and non-myelin MM as well as water components in a deuterated brain sample [9]. This preliminary study was limited by B1 inhomogeneity and relatively small FA range. Moreover, ex vivo measurements suffer from sensitivity to tissue degeneration and external parameters such as temperature. Here, we present methodological improvements to this approach, including the extension of the FA range, B1 mapping and signal stability monitoring. These are applied to both deuterated and untreated porcine brain.



Two slices of porcine brain were stored frozen and thawed before scanning. One sample underwent an almost complete exchange of H2O with D2O to minimize water signal. A second sample was left untreated. Single-point imaging (SPI) was performed on a 3T Philips Achieva system with dedicated short-T2 hardware, including a high-performance gradient (220mT/m, 100% duty cycle) [10]. SPI was acquired at 14 different TE=33-2067us for sets of FAs ranging from 2 to just above 20 deg. Flip angles maps were estimated via scaling of high-resolution reference B1-efficiency maps acquired in doped water with a global B1-efficiency measured in the tissue sample. Multi-TE series at FA ~9 were repeated throughout data acquisition to monitor signal stability. The components were separated by voxel-wise fits of a 3-component model to each multi-TE series, resulting in three amplitude maps for each FA. They correspond to myelin (AU, ultra-short T2~5us) and non-myelin (AS, short T2~100us) MM and water (AW, long T2~50ms) [11-13]. The steady-state signal equation was fitted to amplitudes as a function of FA to estimate T1 for each component.



Fig. 1 shows the signal component amplitude maps and the relative component amplitudes averaged over the green WM ROI. Fig. 2 shows T1 maps and averages over the WM ROI in Fig. 1. T1 in MM pools is shorter than water T1. Water T1 is at the low end of the range of previous estimates. T1 times are longer in D2O. In Fig. 3 signal amplitude averages over the ROI from Fig. 1 are plotted as a function of FA with curves corresponding to best fits of the steady-state equation. Solid circles represent data included in the fit, points shown as open circles were used to monitor signal stability. The water component in D2O and the myelin component in H2O show systematic deviations from the signal equation.  Open circle data from Fig. 3 are plotted as a function of scan time in Fig. 4. Changes in the MM pool amplitudes over time are small compared to changes across FA. In D2O, water signal increases over time, while changes in H2O are negligible compared to changes over FA.



In D2O the effect of MT on MM pools is minimized and T1 estimates are expected to correspond to intrinsic T1. The obtained values are in good agreement with previous estimates from multi-pool modeling [5,7,14-16] and UTE imaging [17,18] and significantly shorter than T1=1s widely used in quantitative MT [19]. In H2O, MT affects T1 relaxation in the MM components, resulting in a longer apparent T1 and a deviation from the steady-state equation. A deviation is also observed for the water pool in D2O, where MT effects are expected to be enhanced by the increased relative size of the MM pool. This also explains the decrease in the apparent T1 compared to the H2O sample which is consistent with previous findings [20]. The water T1 might be further reduced due to the presence of significant myelin water signal at short TE, which has been reported to have shorter T1 than intra/extracellular water [16]. Signal variation over time is small compared to changes across FAs and is thus not expected to bias T1 estimates except for the water pool in D2O.



Direct T1 mapping of the water as well as myelin and non-myelin MM pool has been successfully performed in a deuterated and an untreated brain sample. We improved upon our previous results of the intrinsic T1 of the myelin and non-myelin MM, obtaining T1^U=226±7 and T1^S=236±19. Observed deviations from the steady-state signal equations in the smaller pools as well as the increase in apparent T1 following deuteration can be attributed to the presence of MT effects that are modulated by pool sizes.


Lara Maria BARTELS (Zurich, Switzerland), Emily Louise BAADSVIK, Markus WEIGER, Benjamin Victor INEICHEN, Klaas Paul PRUESSMANN
14:06 - 14:08 #45942 - PG154 A temperature correction model for MRI parameters in deep gray matter substructures using real-time forehead temperature.
PG154 A temperature correction model for MRI parameters in deep gray matter substructures using real-time forehead temperature.

A major limitation of postmortem (PM) in-situ MRI is the variability in brain temperature at the time of image acquisition as it affects multiple MRI parameters [1]. To ensure reliable group comparisons, temperature-related alterations in MRI parameters must be corrected. A previous study developed a temperature correction model based on real-time forehead temperature measurements during the MRI acquisition [2]. This model can be applied to correct MRI parameters in white matter, cerebral cortex, and deep gray matter (DGM) as a whole. Nevertheless, for the investigation of neurodegenerative diseases, the evaluation of specific DGM substructures, such as hippocampus or brainstem is paramount [3,4]. The aim of this study was to develop a temperature correction model for MRI parameters in DGM substructures using non-invasive real-time forehead temperature measurements.

All procedures were approved by the local ethics committee. PM in-situ (brain not extracted from the skull) whole-brain MRI scans were conducted in 17 forensic cases (age at death = 56.1 ± 14.8 years; four females, 13 males), all with an autopsy request by the local prosecutor. Prior to the scan, five of the subjects were stored at room temperature (19 °C), while twelve were stored in a cooling chamber at 4 °C. During the MRI scan, the forehead temperature was continuously assessed every 10 s using an MR safe surface temperature probe with a measurement accuracy of ±0.2 °C (custom build product, Testo AG, Mönchaltorf, Switzerland). For further analysis, the temperature was averaged for each sequence. The scans were performed at 3T (Siemens MAGNETOM Prisma), including the following sequences: Diffusion-weighted single-shot echo-planar imaging DTI sequence to quantify MD and FA; multi-contrast spin echo sequence with 12 different TEs to quantify T2; multi-echo gradient echo sequence with 12 different TEs to quantify T2*; inversion recovery spin echo sequence with 6 different inversion times to create the DGM masks and to quantify T1. FSL FIRST [5] was used to create masks for the DGM substructures caudate, putamen, pallidum, hippocampus, amygdala, thalamus, and brainstem. After correcting for eddy currents, FSL’s dtifit command was used to generate FA and MD maps. T2 and T2* maps were generated using a voxel-wise two-parameter mono-exponential single decay fit, while T1 was calculated voxel-wise using a biexponential fit with three parameters (M0, p, T1) and T2 of the corresponding voxel using python. The factor p accounts for the B1 error leading to a non-ideal spin inversion. All statistical analyses were performed using python. The MRI parameters were averaged for each tissue type. The temperature dependence of each MRI parameter was assessed by fitting a linear model to the data, as proposed by Nelson et al. [6]. Further, 95 % confidence intervals of the linear fits were determined. A Pearson’s p-value ≤ 0.05 was considered statistically significant. The Pearson correlation coefficient (r) was used to assess the strength and direction of the linear relationship between the MRI parameter and temperature.

Fitting a linear model to the MRI data revealed statistically significant temperature dependencies for MD across all investigated DGM substructures except for pallidum, and for T1 in the putamen, pallidum, hippocampus, and brainstem. Among these cases, the correlation was positive, except for T1 in the putamen, where a negative correlation with temperature was observed. No significant effect of temperature was observed on FA, T2, and T2*. For the statistically significant cases, the fitted linear models and the corresponding statistical parameters are shown in Table 1. The linear models fitted to the data, with MRI parameters plotted against the mean forehead temperature per sequence, are shown in Figure 1 (FA and MD), Figure 2 (T1), and Figure 3 (T2 and T2*).

The objective of this study was to develop a temperature correction model for MRI parameters in DGM substructures using real-time forehead temperature. In PM in-situ studies, it is essential to apply temperature correction to the MRI parameters that showed a significant linear correlation with temperature. Such temperature corrections can be performed using the intersect a and slope b derived from the fitted linear models. However, this approach is limited by the assumption of a uniform temperature distribution within the brain. Nevertheless, forehead temperature can be measured non-invasively and in real-time, without delaying MRI scans or introducing additional temperature-related effects. This method is therefore well-suited for practical use.

This study demonstrated a linear correlation of MD and T1 with temperature in several DGM substructures. The fitted linear models can be used to correct PM MRI parameters for temperature, which is a crucial prerequisite for performing group comparisons, for example in the context of biomarker development for neurodegenerative diseases.
Dominique NEUHAUS, Dominique NEUHAUS (Basel, Switzerland), Eva SCHEURER, Claudia LENZ
14:08 - 14:10 #46103 - PG155 Microstructure differences in metastasis, glioma and healthy brains using neurite orientation dispersion and density imaging.
PG155 Microstructure differences in metastasis, glioma and healthy brains using neurite orientation dispersion and density imaging.

Brain tumors can cause not only localized tissue disruption but also widespread alterations in brain structure and function [1]. While conventional MRI focuses on identifying tumor mass and peritumoral edema, it may miss subtle microstructural changes that can impact clinical outcomes. Neurite orientation dispersion and density imaging (NODDI) enables a more detailed assessment of brain tissue by quantifying orientation dispersion (ODI), neurite density (NDI) and free water fraction (FWF) [2]. Prior studies focused on tumor and peritumoral areas with limited investigation of brain-wide effects. Therefore, this study aimed to systematically compare microstructural alterations in both hemispheres of metastasis and glioma patients with those of healthy controls. This helps to understand how tumors and edema affect brain microstructure beyond the visible lesion.

We included four patients with morphologically atypical brain metastases, three patients with gliomas and nine healthy controls (Table 1). All tumors were restricted to one hemisphere. Brain MRI scans were performed at a 3 T (MAGNETOM Skyra, Siemens Healthineers, Erlangen, Germany) scanner using a 64-channel head coil. The scan protocol consisted of a diffusion weighted multi-shell echo-planar imaging diffusion tensor imaging (DTI) sequence (b = 1000 and 2000 s/mm², 30 diffusion directions, 5 b = 0 s/mm², TE = 97 ms, TR = 6700 ms, isotropic resolution of 2 mm³), a reverse phase-encoded DTI sequence (b = 0 s/mm²) and a magnetization prepared rapid gradient echo sequence (MPRAGE; TE = 2.12 ms, TR = 1690 ms, flip angle = 8°, isotropic resolution of 0.8 mm³). Diffusion data were preprocessed using TractoFlow [3]. To compute the maps of ODI, NDI and FWF, the Watson model in the cuda diffusion modelling toolbox (cuDIMOT; [4]) was used. In 3D Slicer [5,6], ball-shaped regions of interests (diameter approx. 1.5 cm) were manually placed in normal appearing WM of the affected hemisphere. Freesurfer [7] was applied to segment the contralateral brain hemisphere of the patients and the whole brain of the controls into white matter (WM), deep gray matter (DGM) and cortex. Analyses of covariance (ANCOVA; age as covariate) were performed using MATLAB [8].

Boxplots illustrating the distribution of ODI, NDI and FWF values for normal appearing WM in the affected hemisphere, contralateral hemisphere and controls are presented in Figure 1. Table 2 summarizes the ANCOVA results. In WM of the affected hemisphere, both metastasis and glioma patients showed statistically significantly higher FWF compared to controls. Additionally, glioma patients exhibited increased NDI relative to controls. In the contralateral hemisphere, FWF was significantly higher in metastasis patients in WM and cortex and in glioma patients in WM and DGM compared to controls. ODI was significantly lower in the contralateral cortex of metastasis patients and in contralateral DGM of glioma patients. Age was a significant confounding factor for FWF in the contralateral cortex of metastasis patients as well as for FWF in the contralateral DGM and cortex and ODI in the contralateral WM and cortex of glioma patients. Significant interactions of group and age were observed for NDI in the contralateral cortex and FWF in the contralateral WM and cortex of metastasis patients as well as for FWF in the contralateral DGM and ODI in the contralateral WM of glioma patients.

Increased FWF in the affected hemisphere compared to controls can be attributed to the presence of edema or extracellular water accumulation, even in normal appearing WM [9,10]. The space occupying nature of gliomas may compress surrounding tissue, resulting in elevated NDI in the affected hemisphere [11]. Also in the contralateral hemisphere, FWF is higher than in controls, suggesting fluid accumulation not only in the affected but also in the contralateral hemisphere [12]. Decreased ODI in cortex and DGM may reflect altered neuronal connectivity or compensatory reorganization, reducing dendritic complexity. Age emerged as a significant factor, explaining a considerable portion of the variability in both ODI and FWF in the contralateral hemisphere beyond group effects alone. Moreover, the significant group-by-age interactions highlight the non-uniform influence of age on NODDI parameters across patients and controls. This finding underscores the importance of accounting for age when interpreting microstructural metrics.

Our findings highlight the sensitivity of the NODDI model to subtle, widespread changes in brain microstructure. Edema and microstructural alterations are not confined to the tumor vicinity, emphasizing the importance of comprehensive brain assessment in treatment planning and disease monitoring. Larger studies are needed to strengthen these preliminary findings, clarify NODDI parameter differences between low- and high-grade gliomas and explore gender-specific differences.
Melanie BAUER (Innsbruck, Austria), Stephanie MANGESIUS, Michaela WAGNER, Johannes KERSCHBAUMER, Daniel PINGGERA, Astrid GRAMS, Elke R. GIZEWSKI, Christoph BIRKL
14:10 - 14:12 #47823 - PG156 Iron load and decreased myelination of deep grey matter nuclei in leukodystrophies, new insights using DECOMPOSE-QSM.
PG156 Iron load and decreased myelination of deep grey matter nuclei in leukodystrophies, new insights using DECOMPOSE-QSM.

Leukodystrophies (LD) are a group of rare, genetic, progressive disorders characterized by the occurrence of white matter (WM) changes in the brain. Due to the highly heterogeneous spectrum and rarity of LD, there is still a lack of MRI quantitative biomarkers useful to guide diagnosis, monitor progression, and innovative therapeutic approaches. Although WM degeneration is the hallmark of LD, the involvement of deep gray matter (DGM) structures remains largely unexplored. In other neurodegenerative disorders[1,2,3], Quantitative Susceptibility Mapping (QSM) has been proved to be useful as a quantitative biomarker and recently some algorithms for the separation of paramagnetic and diamagnetic susceptibility sources, such as DECOMPOSE-QSM[4] and ????-separation[5], allow to distinguish the contribution of iron and myelin colocalized within the same voxel. This pilot study aims to use DECOMPOSE-QSM to explore the patterns of myelination and iron deposition in DGM nuclei in leukodystrophies.

Five patients with LD (23-30yo, 4M, carrying mutations in the genes PLP1, ERCC2, GFAP, POLR3, MORC2) and nine healthy controls (HC) (30-40yo, 5M) underwent an MR exam on a 3T GE Signa Premier scanner. The protocol included a multi-echo GRE with whole-brain coverage, a T2-weighted FLAIR for lesion detection, and a T1-weighted MPRAGE for anatomical reference. GRE magnitude images were skull-stripped using FSL-bet[6] and AFNI-3dAutomask[7]. Susceptibility maps were computed from the GRE phase via STISuite[8] using laplacian phase unwrapping[9], V-SHARP[10] background field removal, and iLSQR[11,12] for dipole inversion. Paramagnetic and diamagnetic components of susceptibility (PCS and DCS) were estimated using DECOMPOSE-QSM4. By using ANTs, the GRE magnitude image and the T1-weighted image of HCs were coregistered and used to create a study-specific template, then warped to the CIT168 template[13]. From this atlas, we derived the ROIs for caudate nucleus (Ca), putamen (Pu), globus pallidus (GP), red nucleus (RN), and substantia nigra (SN) by setting a 0.4 probability threshold to the probabilistic labels and eroding by one voxel. In one exception, the dentate nucleus (DN) was manually drawn on the study-specific template. Dysmorphism and atrophy hindered accurate registration of patients to the template. Hence, all ROIs were manually segmented on the T2*-weighted image of each patient. Average QSM, PCS, and DCS were computed for each ROI and each subject and were age-corrected using linear regression when a significant Pearson’s correlation with age was found (p<0.05). Values of left and right ROIs were averaged. These values were compared across groups using the Mann-Whitney U test (significance threshold p<0.05 after False Discovery Rate correction). To explore the susceptibility pattern of single patients, they were individually compared to the control population by computing the t-score for each ROI and each map.

Figure 1 displays the anatomical FLAIR images of all patients compared to one control subject. Figure 2 shows QSM, PCS, and DCS maps for a GFAP patient and an age-matched control. Age effect was reported in several nuclei for QSM and PCS, but not for DCS. In Figure 3A, we report an increase in QSM in LD patients compared to HC in GP and Pu, while in Figure 3B, in comparison, PCS was increased not only in these ROIs but also in SN, potentially indicating higher PCS sensitivity to iron overload with respect to QSM. In Figure 3C, we highlight the lower absolute DCS in GP, Pu, and DN, suggesting a reduction of myelination. Figure 4 shows the t-score analysis of individual subjects revealing different patterns of iron load and myelination in different pathologies and individuals, showing different degrees of degeneration of basal ganglia, midbrain, and cerebellum.

DGM nuclei involvement may be present in individuals with leukodystrophies. In this pilot study, we observed susceptibility alterations due to increased iron load concurrently with decreased myelination in DGM. While alterations of the WM are well described in these patients, myelin reduction in DGM nuclei remains underinvestigated and iron deposition has only been reported anecdotally in animal models[14] and in other neurodegenerative disorders[15]. It is of note that each patient presented a unique distribution of these alterations. This individual specificity in the pattern distribution should be investigated to underline possible genotype-imaging phenotype correlations.

QSM mapping may represent an important and clinically applicable tool for the quantitative assessment of leukodystrophies in DGM. The investigation of these patterns of iron and myelin spatial distributions paves the way for new diagnostic hints and specific follow up biomarkers.
Marta LANCIONE, Matteo CENCINI, Bianca BUCHIGNANI, Rosa PASQUARIELLO, Domenico MONTANARO, Chunlei LIU, Roberta BATTINI, Laura BIAGI, Michela TOSETTI (Pisa, Italy)
14:12 - 14:14 #47655 - PG157 Intracranial volume loss and skull thickening in metachromatic leukodystrophy and multiple sclerosis.
PG157 Intracranial volume loss and skull thickening in metachromatic leukodystrophy and multiple sclerosis.

Intracranial volume (ICV) is often used as a normalization factor in volumetrics and is considered stable in adults [1]. We noticed thick skulls on MRI scans of leukodystrophy patients. These are rare, genetic disorders, affecting mainly the white matter, sometimes leading to atrophy at a young age. This observation prompted us to quantify the skull thickness in patients with metachromatic leukodystrophy (MLD), a leukodystrophy characterized by early-onset atrophy [2]. Additionally, we investigated MRI scans of people with multiple sclerosis (pwMS), to investigate whether similar skull changes could occur in a non-genetic disease. In this study, we aimed to quantify skull thickness and ICV in patients with MLD and in pwMS, and the potential relation between skull thickness and ICV.

We retrospectively analyzed cross-sectional and longitudinal MRI scans of participants with MLD (n=32, 11 male, scans=136, median age first scan=14.1 [IQR 7.9-25.7] years), MS (n=232, 78 male, median age first scan=47.3 [IQR 39.6-55.4] years, scans=431), and controls (n=140, 68 male, median age first scan=31.2 [IQR 10.7-48.9] years, scans=319). A flow-chart of the analysis is shown in Fig. 1. ICV was estimated from 3D T1-weighted images using SynthSeg [3]. To determine skull thickness skull surfaces were extracted from 3D T1-weighted images, using FSL BET’s betsurf function, supplemented with T2-weighted images when available [4]. Skull bases were removed, and point clouds (5×10⁵ points) were generated with BrainCalculator [5]. Skull thickness was calculated as the median Euclidean distance between points between the inner and outer skull surfaces. The MLD and control groups were split into participants below and above 20 years to account for natural ICV and skull growth. In the pwMS group, all participants were older than 20 years. For both age groups separately, linear regression models were fitted to calculate slopes (Δ) in ICV and skull thickness per year for each subject.

Scatterplots of ICV and skull thickness as a function of age are shown in Fig. 2A and B, respectively. Slopes in ICV and skull thickness are shown in Fig. 3. Both ICV and skull thickness showed natural growth in young (<20y) controls. In young MLD participants, ICV decreased (-18.8 ± 22.4 mL/year, p<0.001). Above age 20y, ICV and skull thickness remained stable in controls. In comparison to controls, we observed ICV loss in MLD participants (-4.01 ± 8.29 mL/year, p=0.004) and in pwMS (-2.99 ± 2.69 mL/year, p<0.001), as well as skull thickening (MLD: 0.16 ± 0.14 mm/year, p<0.001, pwMS: 0.04 ± 0.09 mm/year, p=0.013). The relation between ICV and skull thickness in adult groups is shown in Fig. 2C. Negative correlations were found between ICV and skull thickness in both disease groups (MLD: -19.39mL/mm, p<0.001, pwMS: -13.16 mL/mm, p<0.001), but not in controls (p=0.222).

These findings challenge the assumption of a stable ICV after reaching adulthood and suggest an adaptive skull response to atrophy. In (cross-sectional) analyses using normalized volumes, ICV shrinkage may potentially underestimate atrophy. Further research is needed to explore the underlying mechanisms of ICV shrinkage and skull thickening, and its potential impact on volumetric outcomes to make more accurate evaluations of brain atrophy progression.

This study provides evidence that in MLD and pwMS skull thickening and ICV shrinkage occur, challenging the assumption of a stable ICV in adults, and even before reaching adulthood.
Guus VORST, Petra POUWELS (Amsterdam, The Netherlands), Nicole WOLF, David VAN NEDERPELT, Frederik BARKHOF, Marjo VAN DER KNAAP, Menno SCHOONHEIM, Eva STRIJBIS
14:14 - 14:16 #47678 - PG158 Investigating the relationship between sickle cell anaemia and brain tissue conductivity in Tanzanian children using MR-EPT at 1.5T.
PG158 Investigating the relationship between sickle cell anaemia and brain tissue conductivity in Tanzanian children using MR-EPT at 1.5T.

Sickle cell anaemia (SCA) is a genetic blood disorder causing haemoglobin to polymerize and red blood cells to adopt an abnormal sickle-shape. SCA is known to impact normal neurocognition, and poses serious risks such as haemorrhagic or ischaemic stroke [1]. The relationship between SCA and magnetic susceptibility has recently been studied [2], but its effect on tissue electrical conductivity (σ) remains unknown. σ is an intrinsic tissue property determined by the concentration (and mobility) of ions [3]. This can be non-invasively measured via phase-based Electrical Properties Tomography (EPT), which derives σ from the MRI transceive phase (φ0), using the integral form of the truncated Helmholtz equation [4]. Here, we used a previously optimised EPT pipeline [5,6] to test whether SCA has an impact on brain tissue conductivity. In children with SCA, we also investigated whether the presence of silent cerebral infarcts (SCIs) or vasculopathy affects conductivity [7].

Using an optimised EPT pipeline [5,6], conductivity maps were generated for a cohort of 231 Tanzanian children: 181 with SCA and 50 healthy controls (HCs), aged 13.1 ± 4.0 and 10.9 ± 3.4 years, respectively, 109/122 male/female. MRI acquisition: T2*-weighted multi-echo 3D GRE and T1-weighted MPRAGE were acquired at Muhimbili National Hospital, Tanzania, on a 1.5T Phillips Achieva system using either an 8-channel or birdcage RF coil. 3D-GRE had: 5 echoes, TE1 = 4.28 ms, ΔTE = 4.94 ms, TR = 27.4 ms, resolution = 1.458 x 1.458 x 1.5 mm3, bandwidth = 287 Hz/pixel, FA = 15˚. Analysis: Grey matter (GM), white matter (WM) and cerebrospinal fluid (CSF) were segmented from the T1-weighted image using FSL-FAST [8]. 15 smaller regions of interest (ROIs) were segmented from the same T1-weighted image using SynthSeg [9]. To account for age differences between SCA and control groups, age correction was applied to σ values by regressing out linear age effects. For regional analysis, the median conductivity value was calculated, excluding negative values and values > 10 S/m, as these were considered physically implausible and erroneous. Groupwise comparisons (two-sample t-tests) were performed between age-corrected median σ in SCA vs HCs. The impact of sex and age on σ was investigated using ANOVA. In SCA, the effect of SCIs and vasculopathy on σ was assessed using two-sample t-tests.

Fig. 1 shows a representative conductivity map and corresponding ROI segmentation. Fig. 2 shows groupwise comparisons of median conductivity, across tissue types. Table 1 shows the median conductivity values in all tissue types and ROIs, averaged across all subjects, alongside t-test p-values without and with age-correction. With age-correction, no significant differences were observed between SCA/HCs, in any tissue type or ROI. Fig. 3 illustrates a significant negative correlation between σ and age in WM, in the SCA group only (not HCs). Specifically, this age-related effect was significant in the cerebral WM (p=0.002) but not in the cerebellar WM. No significant conductivity-age correlations were found in CSF, GM, or other ROIs. No significant association was observed between σ and the presence of SCIs or vasculopathy.

This work represents the first application of MR-EPT to study SCA, offering novel insights into a complex and relatively understudied disease. Our findings indicate that the presence of SCA does not significantly affect brain tissue conductivity. WM conductivity was found to significantly decrease with age in SCA, supporting the hypothesis that SCA acts as an accelerated aging syndrome [10]. The fact that this effect occurred only in WM may relate to the widespread WM integrity loss previously associated with SCA [11], which may worsen over time. Future work will consider relationships between σ and other clinical variables, such as oxygen saturation.

We used an optimised EPT pipeline to investigate the effect of SCA on brain tissue conductivity, in Tanzanian children at 1.5T. The presence of SCA had no significant impact on conductivity. However, in SCA, WM conductivity was negatively correlated with age. By optimising EPT at 1.5T, this work presents an exciting opportunity to study SCA and other diseases affecting the brain, particularly in less medically developed parts of the world.
Philippa SHA (London, United Kingdom), Jierong LUO, Oriana ARSENOV, Mitchel LEE, Mboka JACOB, Dawn SAUNDERS, Fenella KIRKHAM, Karin SHMUELI
14:16 - 14:18 #46428 - PG159 Regional brain volume alterations in FGFR-related craniostenosis: a normative modeling approach.
PG159 Regional brain volume alterations in FGFR-related craniostenosis: a normative modeling approach.

Craniostenosis is a cranial malformation caused by the premature closure of some sutures [1], and may be of syndromic origin, as in the rare Crouzon syndrome (CS, 1/50,000 births), Muenke syndrome (MS, 1/30,000 births) and Apert syndrome (AS, 1/65,000 births) [2,3]. These are caused by mutations in the FGFR-2 and FGFR-3 genes [3], which play critical roles in skull and brain development, and have been associated with variable neurodevelopmental outcomes. In this study, we investigated regional brain volume growth and scaling in these FGFR-related syndromes using a normative modeling approach.

We analyzed 65 patients, including 23 pre-operative CS, 7 post-operative (1st step) CS, 4 pre-operative AS, 6 post-operative (1st step) MS and 23 post-operative non-syndromic (NS) patients, imaged at Hôpital Necker-Enfants Malades (mean age=5.46 years, M/F=38/25). A control group of 130 typically developing children (from Hôpital Necker, the Baby Connectome Project, and Neurospin) was included (mean age=5.99 years, M/F=72/58), with 25% of site-matched controls (Hôpital Necker). 3D isotropic T1-weighted MRI scans were segmented into 6 hemispheric and 3 subcortical structures using AssemblyNet [4] and Morphologist [5] pipelines. Regional volumes were extracted. Lateralization indices of volumes were calculated and did not show significant differences so volumes of homologous left and right regions were summed. ComBat harmonization was applied to correct for site effects then for sex. First, transversal growth curves were estimated in controls using a Turner's model [6] for each volume of interest. Homoscedasticity of residuals was confirmed (using Breusch-Pagan and 5-slot Levene's tests) which allowed for reliable z-score estimation. Patient data were evaluated within this normative framework to assess deviations from typical development. We used a Shuffle and Split procedure (a permutation-based test able to accommodate small sample size) to assess mean deviations at the group level. Additionally, the proportion of abnormal individuals (below the 10th or above the 90th percentile) was estimated and tested against the proportion observed in controls using a proportion test. Second, age independent volumes were obtained by projecting all subjects to 18 years of age, assuming preserved z-scores. Static scaling curves (with respect to brain size, i.e., total brain volume) were then estimated using a power-law model. Homoscedasticity of residuals was confirmed. Normative scaling analysis was performed using the same permutation and proportion tests as previously described for growth.

In pre- and post-operative patients with CS, regional brain volumes were expected for age (growth) and brain size (scaling), except for enlarged lateral ventricles (corrected p<10⁻⁹). In patients with AS, total brain volume, cerebellum, ventricles, temporal, parietal, and central volumes were increased for age (corrected p=10⁻3, 10⁻7, 10⁻7, 10⁻7, 0.02, 10⁻7 respectively), but notably not frontal volume. With respect to brain size, temporal and cerebellar volumes were oversized (corrected p<10⁻7 for both) while frontal volume was undersized (meaning under-scaled). In patients with MS, temporal volume was increased for age (corrected p=10⁻6) and oversized with respect to brain size (corrected p=10⁻7), while frontal volume was under-scaled (corrected p=10⁻7). Postoperative NS patients showed brain volumes consistent with controls for age but a slight frontal oversizing and temporal undersizing relative to brain size (corrected p=0.02 and 0.03 respectively).

In CS, aside from ventricular enlargement, brain volumes showed no deviation from typically developing individuals. Given the high clinical and genetic heterogeneity of CS, with variable suture closure and diverse FGFR2 mutations, some subgroups might exhibit more pronounced neuroanatomical deviations not detected due to limited statistical power. By contrast, patients with AS and, to a lesser extent, patients with MS showed brain volumetric anomalies. Interestingly, the disproportions observed in the AS macrocephalic brain (undersized frontal and oversized temporal volumes for brain size) are also observed in the normocephalic MS brain. This finding may have pathophysiological significance considering that these syndromes both have high genetic homogeneity but in two different FGFR genes. These neuroanatomical patterns suggest that the mutation itself, beyond cranial morphology, plays a key role in brain development.

Our results provide new insights into the neuroanatomical consequences of FGFR-related craniosynostoses, revealing that both differential brain growth and scaling can be altered in genetically homogeneous (MS and AS) forms and promoting further analyses to identify more subtle subgroup-specific alterations in heterogeneous (CS) forms. They also show that sensitive computational normative neuroanatomy can be achieved in such rare diseases using care-related MRI datasets.
Ombline DELASSUS (Paris), Lucas CHOLLET, Barbara YOUNGUI, Jérémy SADOINE, Giovanna PATERNOSTER, Jean-François MANGIN, Roman Hossein KHONSARI, David GERMANAUD
14:18 - 14:20 #47830 - PG160 Abnormalities in brain anatomy are potential biomarkers of deep brain stimulation efficacy in children with dystonia.
PG160 Abnormalities in brain anatomy are potential biomarkers of deep brain stimulation efficacy in children with dystonia.

Deep brain stimulation of the globus pallidus internus (Gpi-DBS) is a highly effective surgical symptomatic treatment for various forms of pediatric-onset dystonia. However, clinical outcomes remain highly variable among dystonia forms. Several factors may contribute to this variability, including structural brain differences, particularly in regions associated with the dystonia connectome. These changes can be studied through the analysis of preoperative magnetic resonance images (MRI) in dystonia patients undergoing Gpi-DBS. The aim of this study was to characterize a cohort of dystonia patients treated with Gpi-DBS and a healthy subject (HS) group, by comparing their MRI-derived volumetric and cortical thickness measures. Additionally, it sought to explore the relationship between these measures and clinical outcomes by comparing data from responders and non-responders to GPi-DBS.

A cohort of 34 Gpi-DBS-treated dystonia subjects and 65 HS was analysed. Both groups included participants aged 7–20 years. Patients outside this range or with necrotic brain lesions were excluded. The dystonia group includes preoperative MRI from consecutive subjects who underwent DBS surgery at Vall d’Hebron Hospital between 2020 and 2024 with a minimum follow-up period of six months. Gpi-DBS response was assessed by comparing pre- and post-intervention scores on the Burke-Fahn-Marsden Dystonia Rating Scale. A postoperative improvement of ≥25% was used to define responders. The MRIs of the HS group were obtained from the public OpenNeuro repository. The 3D T1-weighted MRI were segmented using Fastsurfer, providing measures of cortical thickness, as well as volumetric estimations of global metrics and subcortical structures. Cortical thicknesses were averaged across both hemispheres, resulting in 31 measures. Volumes from the left and right hemispheres were summed and normalized by the total estimated intracranial volume to yield 18 volumetric measures for comparison. To harmonize values across different acquisition protocols and scanners, the parametric version of the ComBat tool was used. A linear model was applied to compare each morphological variable between patients and HS. ANCOVAs were conducted to assess differences between responders and non-responders, and between each of these groups and HS, using age as a covariate in both analyses. Post hoc comparisons were performed using estimated marginal means, and multiple comparisons were corrected using the Benjamini-Hochberg test. All statistical analyses were conducted in RStudio.

The dystonia cohort included 4 different image-acquisition protocols: one with a 1.5T magnet and three in three different 3.0T magnets. The HS cohort also included 4 acquisition protocols, all using different 3.0T scanners. In the comparison between patients and HS, 18 out of 31 cortical regions showed a significant decrease in cortical thickness in the dystonia group (ranging from 2% to 11%) when compared to HS, while 3 regions showed a 2-3% increase in dystonia subjects. Regarding volumetric fractions, 15 out of the 18 measures were significantly reduced in dystonia patients, ranging from 5% to 19%. Ventricular volume was markedly increased—by approximately 35%—in dystonia patients compared to HS. Furthermore, the thalamus, hippocampus and total subcortical gray fractions were significantly reduced in non-responders to GPi-DBS compared to both HS and responders, with reductions ranging from 10% to 18% and 7% to 10%, respectively.

Several cortical regions in Gpi-DBS patients showed significant cortical thinning when compared to HS, including the sensorimotor cortex, as well as the occipital, cingulate and frontal medial regions. Volumetric analyses further revealed significant reductions in key brain structures, including the cerebellum, thalamus, brainstem, hippocampus, amygdala, and several basal ganglia regions such as the globus pallidus, putamen, and nucleus accumbens. Global volumetric measures were also decreased in dystonia patients, including total cerebral white matter and both cortical and subcortical grey matter fractions. Importantly, significant differences in subcortical gray matter volumes were observed between GPi-DBS responders and non-responders, suggesting a potential link between these structural characteristics and treatment efficacy.

The integration of clinical MRI data with publicly available datasets, coupled with the use of ComBat for harmonization across acquisition protocols, presents a viable approach for studying brain morphology in pediatric dystonia. The presence of widespread structural differences—particularly in regions traditionally associated with dystonia, such as the basal ganglia and motor cortex, but also extending beyond—indicates a broader impact of the disorder on brain structure. More specifically, subcortical volumetric differences may hold promise as potential biomarkers for predicting GPi-DBS outcomes in children with dystonia.
Villa-María ANA, Lucero-Garofano ÁLVARO, Alberich MANEL, Marcé-Grau ANNA, Rovira ÀLEX, Vázquez ÉLIDA, Delgado IGNACIO, Deborah PARETO (Barcelona, Spain), Pérez-Dueñas BELÉN
14:20 - 14:22 #47774 - PG161 Subcortical nuclei in the Action-Observation Network investigated at Ultra-high Field.
PG161 Subcortical nuclei in the Action-Observation Network investigated at Ultra-high Field.

This study investigates the involvement of subcortical structures, particularly the basal ganglia and thalamus, in the Mirror Neuron System (MNS) using ultra-high-field 7T fMRI. Ten participants performed an Action-Observation (AO) and Action-Execution (EXE) paradigm while undergoing fMRI scanning. The study aimed to determine whether subcortical regions exhibit MNS-like activity during these tasks.

Ten participants underwent MRI acquisition on a SIGNA 7T MR system (GE Healthcare, WI, USA). BOLD responses were acquired during an Action-Observation (AO) paradigm and an Action-Execution (EXE) paradigm. A 2D EPI-GRE sequence with 1mm3 voxels was implemented (TR/TE=3s/29.2 ms, FA=78, 114 slices, FOV=21cm, matrix=210x210, ARC acceleration=3.00, HyperBand acceleration=3). Three fMRI runs were performed in AO condition, and two in EXE condition (4’21’’, 87 volumes+4 dummies, for each run). In the AO paradigm, participants watched videos of object manipulations (VIDEO) or images of objects (PICTURE). In the EXE paradigm, participants alternated between grasping a ball close to their right hand (GRASP) or opening and closing their hand (MOT). In AO and EXE paradigms, PICTURE and MOT conditions were control conditions. Instructions were presented on MR-compatible goggles. Conditions alternated in a block design with 15’’ blocks and interleaved by rest periods. The MR protocol included anatomical images (3D 0.6mm3 resolution MPRAGE TR/TI=1.6/1.1 s, FA=8, FOV=22cm, matrix=340x340). fMRI data were pre-processed in AFNI [5-6]. The pipeline included slice-timing and motion correction, brain extraction, correction of distortion by gradient acceleration, spatial alignment to MNI and 8mm smoothing. A General Linear Model (GLM) was used to generate statistical maps, using the SPM gamma variate basis function as hemodynamic response. Acquisition conditions (VIDEO or PICTURE in AO; GRASP or MOT in EXE) were considered as regressors of interest. Six motion parameters, white matter and cerebrospinal fluid maps were noise regressors. To detect voxels differentially activated in the two conditions (VIDEO>PICTURE; GRASP>MOT), we used a general linear test in AFNI. Single subject data were analysed by concatenating runs, group analysis by performing a multiple linear regression. Overlapping activations across subjects were drawn by summing binary masks of significant voxels.

Activations at the group level are in Fig.1 and 2 for AO and EXE condition, respectively, showing positive and significant activations with p<0.001 after FDR correction. Both figures present in separate panels activations associated with each condition (VIDEO and PICTURE in Fig.1, GRASP and MOT in Fig.2) and their contrasts. The contrast maps (VIDEO>PICTURE and GRASP>MOT) show the MNS representation in the brain including cortical areas (frontal, parietal, occipital and temporal lobes), cerebellum, thalamic nuclei and basal ganglia (caudate nucleus and putamen). Contrast maps were combined through a logical AND to search common activations. Fig.3 shows voxels with positive contrast. Shared activations were in temporal, parietal and frontal cortices, cerebellum and thalamic nuclei bilaterally. In the basal ganglia, few voxels were active in both conditions. To assess the impact of inter-subject variability, we calculated maps of overlap from single-subjects. Fig.4 shows results for AO and EXE paradigms (panel A and B respectively), showing superposition of voxel with positive contrast across subjects (warmer colours=more overlap). Subcortical structures show active voxels clustered in the thalamus and basal ganglia with low overlap, indicating high inter-subject variability and at the same time the feasibility of observing subcortical activation at the single subject level (an example is reported in panel C).

We leveraged on the superior SNR of 7T scanners to explore subcortical structures during observation and execution of complex actions. Our results at the group level confirm cortical, cerebellar and subcortical activations during execution and observation of manipulative actions. Activations were visible at the single subject level, with low spatial overlap in subcortical structures, indicating intrinsic inter-subject variability, leading to an underestimation of the activations in the group analysis. Region-of-Interest based analysis might be more suited to reveal activation in small structures as subcortical nuclei [7].

Results show activations in the cortex and cerebellum, as well as in the basal ganglia and thalamic nuclei, as reported from previous studies at lower field [7]. Single subject data suggest subcortical activations can be detected on individual participants, which might be important in rehabilitative treatments involving the MNS, like Action Observation Therapy (AOT) [8-9]. These results add to the possible involvement of subcortical nuclei in the MNS and highlight the advantage of Ultra-High Field in investigating non-cortical brain structures.
Pierfrancesco AMBROSI (Pisa, Italy), Marta LANCIONE, Paolo CECCHI, Antonino ERRANTE, Giuseppe CIULLO, Graziella DONATELLI, Giuseppina SGANDURRA, Leonardo FOGASSI, Michela TOSETTI, Laura BIAGI
14:22 - 14:24 #47252 - PG162 Normal-appearing white matter microstructural alterations in watershed regions of coronary artery disease patients and their link to cognition.
PG162 Normal-appearing white matter microstructural alterations in watershed regions of coronary artery disease patients and their link to cognition.

Coronary artery disease (CAD) is the most prevalent form of cardiovascular disease [1]. In addition to its well‐established effects on the heart [2], CAD is also associated with an increased incidence of cognitive decline [3]. White matter microstructural integrity is essential to maintain cognitive function, and diffusion MRI has shown links between WM microstructure and cognition in aging [4] and small vessel disease [5]. Importantly, WM microstructural alterations in normal appearing white matter (NAWM) may contribute cognitive dysfunction [6,7]. Within WM, watershed regions may be especially vulnerable to ischemic injury [8,9] since this is where terminal arterioles of adjacent vascular territories meet. These regions are also known to be prone to hypoperfusion [10] and WM hyperintensity (WMH) [11]. A large array of techniques can be used to probe WM microstructure, including R1 and magnetic susceptibility from Quantitative Susceptibility Mapping (QSM) which are both quantitative microstructure markers. They are both predominantly sensitive to myelin in WM, with additional contributions from iron [12], a marker of microglial activation and inflammation [13]. Here, we explored the microstructural integrity of NAWM in CAD patients compared to healthy controls by assessing QSM and R1 maps in watershed and non-watershed NAWM. We hypothesized that NAWM in the watershed areas is adversely affected in CAD patients and that these microstructural alterations are associated with poorer cognition.

The study includes 43 CAD patients (age = 68.2 ± 8.7 years, 8 females) and 36 healthy controls (HC) (age = 64.1 ± 7.8, 10 females). Each participant underwent a cognitive assessment from which composite scores for executive function and verbal episodic memory were calculated[14]. MRI data were acquired on a 3T Siemens Skyra. A B1 map and gradient-echo (GRE) sequence with variable flip angles were acquired for calculating B1 inhomogeneities-corrected R1 [15]. An MPRAGE, and axial T2-FLAIR images were acquired for tissue segmentation. A 3D multi-coil multi-echo GRE phase and magnitude data were acquired for QSM, with flow compensation on the first echo [16]. The R1 maps were calculated using the hMRI-toolbox (v0.3.0) in Statistical Parametric Mapping [17]. The phase data of multi-coil ME-GRE data was combined and unwrapped using ROMEO [18]. X maps were reconstructed using TGV-QSM [19]. NAWM and WMH, are segmented using the BISON classifier [20]. A cerebral arterial territory atlas was applied to extract watershed regions at the intersection between the anterior (ACA), middle (MCA) and posterior cerebral artery (PCA) regions [21]. Linear models were utilized in R to assess the group comparison and the relationship between cognitive scores and regional average X and R1. Partial correlation analysis was done to explore the correlation between X and R1. P-values were FDR-corrected (a = 0.05).

Table 1 shows the demographic data of the participants. There was no significant difference in cognitive scores between groups. CAD was associated with higher X and lower R1 in all watershed regions (Figure 2), but not in non-watershed regions. Similarly, in all watershed regions, we identified a negative relationship between verbal episodic memory and X, while MoCA and executive function were associated with higher R1 (Figure 1). Finally, Figure 3 shows that there is a significant negative correlation between X and R1.

Elevated X and lower R1 in CAD were confined to NAWM in watershed regions, consistent with watershed regions being especially vulnerable to vascular dysfunction [9]. R1 in WM is mainly driven by myelin content [12], thus this lower R1 is consistent with demyelination rather than iron deposition (which would elevate R1). Moreover, the significant negative correlation between R1 and X indicates that the main source of contrast is demyelination rather than iron deposition which may occur spontaneously in damaging NAWM [7]. If iron accumulation was dominant, we would expect a weak or even positive correlation. The association between executive function and MoCA scores with lower R1 is consistent with demyelination [22]. Poorer verbal episodic memory associates only with higher X, not R1. This indicates that there may be an additional component related to iron deposition in the relationship between microstructure and this cognitive domain, given the fact that myelination and iron deposition both contribute to higher X (Figure 3 bottom panel). This may indicate a contribution of increased microglial activation and neuroinflammation [23].

In CAD, watershed NAWM shows evidence of lower myelin content, which is associated with poorer cognitive performance, highlighting the vulnerability of NAWM to vascular dysfunction and the need for preventative interventions to preserve brain health in CAD. Future studies should use X-separation technique to help disentangle the effects of demyelination and iron deposition.
Ali REZAEI (Montreal, Canada), Zacharie POTVIN-JUTRAS, Stefanie A. TREMBLAY, Dalia SABRA, Safa SANAMI, Julia HUCK, Brittany INTZANDT, Christine GAGNON, Lindsay WRIGHT, Ilana R. LEPPERT, Christine L. TARDIF, Christopher J. STEELE, Josep IGLESIES-GRAU, Anil NIGAM, Louis BHERER, Claudine J. GAUTHIER
14:24 - 14:26 #47616 - PG163 Personalized DTI-Based Z-Score Analysis of Cerebellar Injury in Mild Traumatic Brain Injury (mTBI).
PG163 Personalized DTI-Based Z-Score Analysis of Cerebellar Injury in Mild Traumatic Brain Injury (mTBI).

Mild traumatic brain injury (mTBI) affects a wide range of individuals and continues to lack reliable objective biomarkers, complicating diagnosis and treatment [1]. Although emerging evidence points to cerebellar involvement in mTBI, this region remains under-investigated due to imaging challenges [2]. Leveraging diffusion tensor imaging (DTI), this study applies a personalized Z-score approach supported by healthy ‘Big Data’ to detect subtle cerebellar microstructural abnormalities in mTBI patients.

This study included 51 symptomatic mTBI patients consisting of 25 females (age: 40.5 ± 11.7 years) and 26 males (age: 45.0±14.1 years). Clinical data including time since injury (TSI) and Post-Concussion Symptom Scale (PCSS) were collected [3]. Each patient was compared to a large, curated dataset of age, sex, and vendor matched healthy controls from multiple open-source repositories [4,5,6]. The healthy control dataset included an equal representation of males and females aged 20 to 65, with Age further divided into nine five-year intervals, beginning with 20-25 and ending with 61-65. Patients were scanned on a GE HealthCare Discovery MR750 3T scanner (system software ver. 29.1) using a 32-channel RF receiver coil. Axial DTI was acquired using a dual spin echo EPI sequence (60 non-coplanar directions, 6 b = 0s/mm2 images, TE/TR = 87/8800ms, b = 1000s/mm2, 2mm isotropic voxels). All healthy controls were scanned on GE 3T machines with varying parameters but adhering to a minimum of 30 diffusion directions and b = 1000 s/mm2. DTI data were preprocessed using FSL tools and registered to MNI space [7,8,9,10]. Scalar maps of fractional anisotropy (FA) and mean diffusivity (MD) were extracted, and 28 cerebellar regions of interest (ROIs) were segmented using a standardized cerebellar atlas [11,12]. A custom pipeline was developed to compute Z-scores comparing each patient to their matched control distribution (by age, sex, and scanner vendor). Abnormality was defined as |Z| > 1.96. Statistical analysis included ANOVAs and linear regression models to assess effects of age, sex, TSI, and ROI. Advanced models like hierarchical clustering and random forests, explored clinical relationships between Z-scores and PCSS. Feature importance and model fit metrics (R², RMSE, η²) were used to evaluate predictors of clinical severity and regional vulnerability.

This study presents a personalized cerebellar assessment of mTBI, highlighting the heterogeneity of injury across patients (Figure 1). Case studies revealed distinct regional abnormalities in FA and MD Z-scores, underscoring the limitations of group-level analyses. Among 51 mTBI patients, 41 showed significant Z-score deviations (|Z| > 1.96) in at least one cerebellar region, with sex and age related trends emerging: males had more abnormal MD, females more abnormal FA, and older individuals (>55) showed more widespread abnormalities. ANOVAs and regressions showed age and ROI as significant covariates in FA and MD variability, while sex had a strong effect on symptom severity (PCSS), corroborated by random forest models (Figure 2). Hierarchical clustering revealed distinct patterns by Sex, while feature importance analyses highlighted Age as key for Z-scores and Sex for PCSS. ROI-specific analysis identified left V (FA) and left Crus II (MD) as key regions, though results varied across models. Symptom clustering and modeling further revealed balance problems and sleep issues as top contributors to Z-score variance due to cerebellar abnormalities (Figure 3). Lastly, PCSS had low predictive value compared to Z-scores, suggesting PCSS is limited by subjective bias (Figure 4). Overall, findings emphasize the need for personalized, objective mTBI assessments that consider age, sex, and regional variability.

This study highlights the importance of individualized neuroimaging analysis in mTBI patients using DTI metrics, revealing that cerebellar white matter abnormalities are significantly associated with clinical symptoms like balance and sleep disturbances. By accounting for demographics and use of vendor-matched controls, our statistical approaches were able to identify key covariates such as Age, Sex, and time since injury in the personalized assessment of each patient’s injury. Findings support the cerebellum’s role in symptom modulation post-mTBI.

We demonstrated the feasibility of a personalized DTI-based Z-score approach to detect cerebellar injury in mTBI, highlighting the variability of microstructural abnormalities across age, sex, and other factors. Findings underscore the importance of individualized assessments and personalized treatment strategies. Cerebellar dysfunction may influence symptom expression, and integrating advanced analytical methods could identify imaging biomarkers. While limitations exist, future work should focus on longitudinal, multi-modal, and AI-driven approaches to enhance diagnostic accuracy and personalize treatment.
Nicholas SIMARD, Michael D. NOSEWORTHY (Hamilton, Canada, Canada)
14:26 - 14:28 #47928 - PG164 Differences in functional connectivity relate to fine motor recovery during chronic phase post-stroke.
PG164 Differences in functional connectivity relate to fine motor recovery during chronic phase post-stroke.

Stroke is a leading cause of death and long-term disability, with 60% of survivors experiencing lasting impairments [1], particularly in fine motor function [2]. Although rehabilitation often targets these deficits in later recovery stages [3], the neural mechanisms driving fine motor improvement are not well understood. Neuroplasticity, particularly changes in functional connectivity within the motor pathway [4], is thought to play a key role, yet its link to fine motor outcomes remains underexplored. This study aims to address this gap by examining whether resting-state connectivity in the motor pathway differs between patients with and without fine motor recovery post-stroke.

We analyzed data from 42 individuals (informed consent, 27 males; mean age: 58 ± 12 years) with first-time unilateral stroke enrolled in the BSTARS clinical trial [5]. Clinical and neuroimaging assessments were conducted at 5 weeks, 3 months, 6 months, and 12 months post-stroke. For this study, we included 35 scans from the 6- or 12-month timepoints to evaluate chronic-phase recovery. To align with previous research methodologies and validate the classification, gross motor function was first assessed using the Fugl-Meyer (FM) scale, with “Improvers” (n=26) defined by a ≥20-point gain. The primary analysis focused on fine motor recovery, measured by the Nine-Hole Peg Test (NHPT) [6], where “Improvers” (n=14) showed a ≥10-second reduction. Resting-state fMRI was acquired on a Philips 3T scanner with a 32-channel coil (TR = 1.0 s, TE = 25.0 ms, flip angle = 65°, voxel size = 2.3 × 2.3 × 2.5 mm³, multiband factor = 3, duration = 8.2 min). Data were preprocessed using fMRIPrep [7] (realignment, normalization to MNI space—a standard 3D brain reference system—, spatial smoothing, and noise correction), with all lesions mirrored to the right hemisphere. Functional connectivity was analyzed using the CONN toolbox [8] with first-level ROI-to-ROI correlations within motor-related regions: primary motor cortex, premotor cortex, basal ganglia, thalamus, cerebellum, and brainstem [9–16]. Group-level differences were tested using a General Linear Model (GLM) with FDR correction (p-FDR < 0.05).

Figure 1 shows the significant differences in connections found between Improvers and Non-improvers of the FM-test. It demonstrates a significant cluster (p=0.0013) with increased connections between the brain stem and the ipsilesional (IL) and contralesional (CL) posterior central gyrus (PostCG), CL and IL precentral gyrus (PreCG) and CL supplementary motor area (SMA). Also Vermis 6 and 7 had an increased connection in Improvers with the IL PostCG and the CL Cerebellum 6 and 8 both had increased connection with the IL PostCG and SMA. Figure 2 shows the significant differences in connections found between Improvers and Non-improvers of the NHPT. Three significant clusters were found: decreased connections between Cerebellum7 with the motor cortex (p = 0.048), increased connectivity within the frontoparietal network (p=0.049) and decreased connectivity between the premotor network and the frontoparietal network (p =0.049).

These findings highlight distinct connectivity differences between Improvers and Non-Improvers. FM-based classification aligns with prior studies, showing altered cortico-cerebellar connectivity [17], brainstem involvement [18,19], and increased connectivity in key motor regions such as the PreCG, PostCG (M1 and S1), and SMA [20]. Focusing on fine motor recovery revealed three key clusters. First, Improvers showed decreased connectivity between cerebellum 7 and the motor cortex (SMA, M1, S1) bilaterally, suggesting reduced integration between these regions. Second, connectivity was reduced between the motor cortex and frontoparietal regions (MidFG, SFG, AG, PaCiG). Each of these has known relevance to motor function: the SFG is linked to complex motor control [21], AG is embedded in key sensorimotor pathways [22], PaCiG seems to interact with the prefrontal cortex to mediate cognitive performance [23], and MidFG is involved in motor planning in a response to sounds [24]. A theory that may explain the results in Figure 2 is that the decreased connectivity in the frontoparietal regions responsible for planning, mediating, connecting and controlling motor function results in a overcompensation, or hyperconnectivity, by the primary motor cortex and cerebellum, which has been speculated before in other neurological disruption studies [25].

Our results support the notion that functional connectivity differs between individuals who recover fine motor skills and those who do not. Specifically, we observed decreased connectivity between the motor cortex and both cerebellum 7 and the frontoparietal network, alongside increased intra-frontoparietal connectivity. These findings may support the theory that hyperconnectivity is a fundamental response to disruption and underscore the frontoparietal network’s role in motor recovery.
Quinten DECKERS (Utrecht, The Netherlands), Jord VINK, Eline VAN LIESHOUT, Bart VAN DER WORP, Johanna VISSER-MEILY, Rick DIJKHUIZEN, Alex BHOGAL
14:28 - 14:30 #47956 - PG165 Decreased levels of N-Acetylaspartyglutamate (NAAG), myo-Inositol (mI), and syllo-Inositol (sI), in cortical brain regions of women exposed to Adverse Childhood Experiences.
PG165 Decreased levels of N-Acetylaspartyglutamate (NAAG), myo-Inositol (mI), and syllo-Inositol (sI), in cortical brain regions of women exposed to Adverse Childhood Experiences.

Adverse Childhood Experiences (ACEs), including abuse, neglect, and maltreatment, are linked to long-term health risks, reduced life expectancy, and changes in brain structure and function [PMIDs: 9635069, 20547282]. Brain imaging studies associate ACE with reduced connectivity between limbic and cortical regions, especially in individuals with mood disorders. Adults with ACE histories show lower prefrontal and hippocampal volumes and altered white matter, though amygdala findings remain mixed [PMIDs: 31445966, 34812558]. Magnetic Resonance Spectroscopy (MRS), particularly the HERCULES method [PMID: 30296560], enables detection of key brain metabolites, offering insight into neurochemical changes related to ACE. However, a distinct neurochemical signature for ACE has yet to be established. Meanwhile, machine learning methods like Logistic Regression (Logit) Support Vector Machines (SVM) and Random Forest (RF) can classify clinical outcomes [PMID: 33980906] i.e, ACE exposure based on data i.e, MRS quantifications . This cross-sectional study aimed to detect ACE-related neurochemical patterns by integrating MRS data with self-reported ACE exposure, supporting non-invasive early detection and intervention strategies to reduce long-term impact.

A total of 43 women aged 19–39 participated in this MRS study, comprising 18 with Low-ACE and 25 with High-ACE exposure. Women were selected due to the higher prevalence [PMID: 40287696] of ACE and the potential for early intervention during young adulthood [PMID: 33308369]. ACE levels were measured using the validated MACE questionnaire [PMID: 25714856], with scores above zero indicating High-ACE. Exclusion criteria included neurological conditions, chronic illness, implants, substance use, pregnancy, or severe depression, the latter screened using the Patient Health Questionnaire-9 (PHQ-9) [PMID: 36865076]. MRS data were acquired using a 3T Philips scanner from the ACC and PFC (via HERCULES) and the hippocampus (via PRESS sequence). Spectral data were analyzed using the Osprey toolbox [PMID: 32603810] and normalized to total creatine (tCr). Group differences in metabolite levels were assessed using Kruskal-Wallis tests, K-W, (p < 0.1, Bonferroni-corrected). To classify ACE groups based on metabolite profiles, machine learning models, including Logistic Regression, RF, and SVM were applied.

Women aged 19–31 were grouped based on MACE scores into Low-ACE (–2.46 to –0.8) and High-ACE (0.78 to 2.76). PHQ-9 scores indicated minimal to moderate depression: 1.18–6.62 in Low-ACE and 3.2–13.1 in High-ACE participants. After quality control (tCr FWHM <13 Hz), 42 ACC, 36 PFC, and 27 hippocampus spectra were included. K-W showed significantly lower NAAG in the ACC (p=0.06) and reduced sI in the PFC (p=0.057) among High-ACE participants (Fig.1). Logit identified NAAG, mI, and Glutathione (GSH) in the ACC, and sI, Lactate (Lac), NAAG, and GSH in the PFC as key ACE predictors (AUCs: 0.80 and 0.86). RF confirmed NAAG and mI (ACC) and sI (PFC) as most influential features (AUCs: 0.83 and 0.88), Fig.2. SVM also identified NAAG and mI in the ACC (accuracy = 0.81), sI and GSH in the PFC (accuracy = 0.75), and mI with NAA in the hippocampus (accuracy = 0.63), Fig.3. Findings suggest distinct neurochemical signatures linked to High-ACE exposure.

This study explores neurochemical differences between High-ACE and Low-ACE women using MRS and machine learning to identify biomarkers linked to ACE exposure. NAAG and sI emerged as key markers, with lower levels in High-ACE participants. NAAG in the ACC and sI in the PFC were supported by both univariate and multivariate analyses. Reduced NAAG may impact glutamate modulation, neuroprotection, and emotion regulation , while lower sI suggests glial dysfunction. mI also showed non-linear links with ACE in ML models. Despite low depressive symptoms, neurochemical differences persisted in High-ACE women. Hippocampal models had lower predictive accuracy, likely due to technical limitations. Findings suggest specific MRS-detectable changes linked to ACE, independent of current mood disorders. While limited by sample size and generalizability, this study highlights potential for early identification of ACE-related brain alterations and calls for further research using longitudinal designs.[PMIDs: 35163193,22457889,15953489]

This study combines MRS and machine learning to examine the neurochemical effects of ACEs in young women. NAAG, mI, and sI emerged as potential biomarkers, with NAAG and sI negatively linked to high-ACE levels in the ACC and PFC. mI showed a non-linear pattern but was consistently selected by machine learning techniques, suggesting relevance. This research offers an important step toward identifying neurochemical signatures of ACE, even in healthy adult populations. Future studies should validate these results in broader populations using longitudinal methods to support early detection and tailored interventions.
Rocio ARTIGAS (Santiago, Chile), Cristián MONTALBA, Claudio PEÑAFIEL, Rodrigo FIGUEROA, Sergio RUIZ, Pablo IRARRAZAVAL
14:30 - 14:32 #47934 - PG166 Neuroinflammatory profiling of high-fat diet effects in IL-1R1KO mice: Insights from multiparametric MRI and indirect calorimetry.
PG166 Neuroinflammatory profiling of high-fat diet effects in IL-1R1KO mice: Insights from multiparametric MRI and indirect calorimetry.

Obesity is a pathological condition with increasing prevalence in our society, due to the complex interplay of biological, socioeconomic and behavioural factors, and is associated with various comorbidities [1]. Chronic inflammation is strongly linked to obesity. Moreover, high-fat diets (HFD) activate pro-inflammatory cascades in the brain, as saturated fatty acids can cross the blood-brain barrier (BBB) and induce pro-inflammatory gene expression [2]. In mice, HFD has been shown to trigger hippocampal dysfunction linked to BBB disruption and neuroinflammation (NI), as well as progressive synaptic and metabolic impairment [3]. Interleukin-1-receptor 1 (IL-1R1), a pro-inflammatory mediator, connects metabolic and inflammatory systems, as its deletion prevents insulin resistance in a diet-induced obesity (DIO) mouse model [4]. Here, our objective is to characterize NI via in vivo multiparametric MRI in IL-1R1KO and wild-type (WT) mice, both fed with standard diet (SD) or HFD. Additionally, we phenotypically assess mice through indirect calorimetry

Male C57BL/6J WT (n=18) and male IL-1R1KO mice (n=19) of 7-8 weeks of age were divided into 2 groups: fed with HFD (n=17) and with SD (n=20) for 20 weeks. In the 10th and 20th week, multiparametric MRI studies were conducted in a Bruker Biospec 7T scanner. Magnetization transfer ratio (MTR) studies, diffusion tensor imaging (DTI), T2 and T2* maps were acquired. Parametric images were generated with a Python-based software and 4 brain regions of interest (ROIs)—cortex (Cx), hippocampus (HPC), thalamus (Thal), and hypothalamus (HTH)—were quantified using ImageJ. Moreover, 5 days after the MRI studies, a phenotyping system (PhenoMaster) was used to analyse mice from each group (n=5-6) during 72 hours (12 hours’ light/darkness cycle), which provided data on indirect calorimetry, locomotor activity and food intake, among other parameters. Linear mixed-effects models were applied to assess the impact of diet and genotype (WT or KO) across ROIs for MRI parameters and an ANOVA analysis was used to evaluate phenotypic differences between groups.

MRI studies have detected significantly higher values of fractional anisotropy (FA), in HFD-fed WT mice than in HFD-fed IL-1R1KO mice after 20 weeks. Also, we can see a significantly decrease of FA values of WT obese mice in comparison to WT mice fed with SD, after 10 weeks. While at 20 weeks, the effect of the diet is no longer statistically significant (Figure 1). We detect significantly higher T2 values, independent of diet, after 10 weeks in every KO mice group and in every area except for Cx and Thal of HFD-fed mice, and in HTH of SD-diet mice. Moreover, after 20 weeks of diet diversification, these differences between genotypes are statistically stronger in every area except for Thal (Figure 2). In the T2*evaluation, the values are significantly higher in the Cx in HFD-fed WT mice than in the SD-fed WT mice. On the other hand, we observe a difference between genotypes-significantly higher values in HPC and Thal of WT mice- in both diets. This effect of the genotype is present in 10-weeks and 20-weeks mice, only in the HPC. Moreover, we observe an increase in T2* values of KO mice in comparison with WT mice, after 10 weeks with SD (Figure 3). WT mice gain more weight and faster than KO mice, and both genotype groups show a loss of circadian oscillations in the respiratory exchange ratio (RER) after 10 weeks on HFD and after 20 weeks too. Finally, RER in HFD-fed mice is close to 0.7 at 10- and 20-weeks’ group (Figure 4)

From multiparametric MRI studies, the effect of the diet can be detected in FA and T2* values, it is probably due to the effect of NI caused by HFD, vasogenic edema and microstructural damage, respectively. We observe significant differences between genotypes: The absence of IL-1R-1 seems to decrease FA values after 20 weeks suggesting a progressive damage in these mice. Higher T2 values and lower T2* values in KO mice can suggest NI, caused by vasogenic edema. The absence of Il1r1 gene in mice alters the neuroinflammatory response [5] and this might affect the homeostasis of the brain tissue. Regarding phenotyping analysis, the higher increase in body weight confirms the acquisition of the obese phenotype in HFD animals. Circadian oscillations in RER are lost in these mice because they are catabolizing mainly fatty acids all day long (RER ~0.7). While SD-fed mice obtain energy from fatty acids, during the hours when they are less active (7 light hours), and from carbohydrates when they are awake, and they can actively eat (7 darkness hours) [6]. To fully interpret the MRI parameter results, we are working in the histology assays and metabolomic post-mortem studies.

These findings support the hypothesis that IL-1R1 plays a key role in NI due to HFD-induced obesity and its suppression alters this response. Multiparametric MRI reveals distinct neuroimaging signatures between genotypes and dietary conditions.
Darwin CÓRDOVA-ASCURRA (Madrid, Spain), Raquel GONZÁLEZ-ALDAY, Lidia ESTEBAN-MERAYO, Nuria ARIAS-RAMOS, Jesús PACHECO-TORRES, Pilar LÓPEZ-LARRUBIA
14:32 - 14:34 #47784 - PG167 Time resolved monitoring of brain activity in response to chemogenetic C-Low Threshold Mechanoreceptor stimulation.
PG167 Time resolved monitoring of brain activity in response to chemogenetic C-Low Threshold Mechanoreceptor stimulation.

The C-Low Threshold Mechanoreceptors (C-LTMR) (or C-tactile fibers) are somatosensory neurons that convey gentle affective touch. They modulate pain transmission via spinal inhibitory interneurons and are therefore a potential therapeutic target [1]. In genetically engineered mice [2], the C-LTMR can be selectively activated by pharmacologic agents. This chemogenetic approach in models of chronic pain may enable us to test the hypothesis that the activation of C-LTMR reduces the activity of brain structures involved in pain processing and perception [3]. In this pilot study in non-pain induced mice, we aim to assess whether functional MRI is sensitive enough to map the cerebral projections of chemogenetically activated C-LTMR under anesthesia.

A mouse model with chemogenetically activable C-LTMR based on intersectional genetics (Nav1.8IresFlpo, called Cre+) was explored under isoflurane anesthesia (1-1.6%) in a PharmaScan 70/16 US equipped with 760 mT/m gradients (BGA 9S HP), a volume resonator (72 mm diameter) for emission, a 2x2 elements cryogenic mouse head surface coil for reception, and ParaVison 6.0 software (Bruker). During imaging, rectal temperature was between 35 and 37°C, and breathing rate between 80 and 150 breaths/min. A first cohort (15 ♀ (9 Cre+) and 11 ♂ (5 Cre+) mice) was imaged using a cerebral blood volume weighted (CBVw) approach before and for 85 min after intravenous (iv) injection of an USPIO (MoldayION, BioPAL) (Fig 1a). A 20-minute interval after USPIO administration was used for CBVw signal detrending (to account for continuous USPIO washout) before Clozapine N-oxide (CNO), a C-LTMR activating drug, was injected intraperitoneally (ip) and CBVw signal was acquired for another 65 minutes. In addition, 4 experiments (without MRI) were performed without USPIO, and one without CNO to study pharmacological interactions. A second cohort (17 ♀ ( 7 Cre+) and 14 ♂ ( 7 Cre+) mice) was imaged with a pseudo continuous arterial spin labeling (pCASL) sequence [4] repeated over 60 min to assess cerebral blood flow (CBF) changes (Fig 1b). C21 was used as C-LTMR activation drug [5]. Cre- mice without activable C-LTMR represented the control group. After motion correction with FSL, images were processed with ImageJ for CBVw mapping (Fig 1a) [6], and with MP3 for CBF mapping [4,7] (Fig 1b) without spatial but with temporal smoothing (5 min for the CBV change, 4 min for the CBF change). Maps of CBV and CBF changes were analyzed individually, with particular attention to ROIs in the somatosensory cortex and brain structures related to emotion processing.

The CBVw approach was successfully carried out in 9 ♀ (5 Cre+) and 7 ♂ (4 Cre+) mice. Other acquisitions were excluded due to technical problems, uncorrectable head motion artifacts, unreliable USPIO injections and respiratory distress which was observed in 10/26 mice 5 to 25 min after CNO administration. A CBV increase was observed in the insular cortex of 3 mice without respiratory distress starting 10 to 25 min after CNO administration (Fig 2). These 3 mice were all ♀ Cre+, and showed a peak CBV change of 15 to 25 % 45 to 55 min after CNO, which agrees with the known pharmacokinetic profile of CNO, and a sexually dimorphic behavior observed in pharmacologic studies. All other mice, including 2 ♀ Cre+ mice, had no reliable CBV change. No vasoactive effect of CNO was noticed in extracerebral tissue. Respiratory depression occurred also when CNO alone was administered to anesthetized mice, excluding an adverse effect of the USPIO. The CBF approach was successfully carried out in all mice of the second cohort, without any adverse effect of the C21 compound. However, no reliable CBF change was observed in the insular cortex or any other brain structure or extracerebral tissue (Fig 3).

Individual variability was observed in the first cohort with respect to the respiratory depression and hemodynamic effect in insular cortex upon CNO administration. Despite possible off-target effects of CNO or its metabolites, identification of C-LTMR specific effects are expected since cerebral hemodynamic effects did not occur in the control group (Cre-) without activable C-LTMR. Although being sensitive and showing results agreeing with expectations, the CBV approach was considered technically challenging, invasive (iv access), and prone to confounding effects (USPIO washout). We therefore attempted to reproduce the results with a non-invasive time resolved functional MRI technique and C21, a drug known to have reduced off-target effects [5]. Despite this quantitative CBF approach, no C-LTMR specific hemodynamic effect has been observed so far. Group-wise comparisons are still ongoing.

A CBVw MRI approach requiring iv injection of an USPIO showed cortical CBV changes upon chemogenetic stimulation of C-LTMR compatible with the known pharmacokinetics of CNO. However, these were not yet reproduced using a non-invasive time resolved quantitative CBF mapping technique.
Khouloud BENZZAOUIA (Marseille), Guillaume ROBERT, Anaëlle MÉAULLE, Ludivine GUYOT, Isabelle VALET, Abdelaziz MOQRICH, Angèle VIOLA, Adriana Teodora PERLES-BARBACARU
14:34 - 14:36 #47598 - PG168 Multi-modality data integration of electrocorticography and fMRI for investigating cross-scale brain network organization in patients with brain tumors.
PG168 Multi-modality data integration of electrocorticography and fMRI for investigating cross-scale brain network organization in patients with brain tumors.

The functional organization of the brain spans multiple spatial and temporal scales. In glioma patients, tumor-neural interactions disrupt brain network architecture at the microenvironment level, locally near the tumor, and globally across the brain (1–4). These disruptions alter functional connectivity, and our understanding of these processes is limited (5). For effective surgical planning, individualized functional mapping is essential to identify and preserve critical regions and minimize postoperative deficits (6). After tumor resection, the brain often undergoes reorganization accompanied by cognitive changes, but the mechanisms remain unclear. In this study, we examine how tumors affect functional organization of the hemisphere they inhabit compared to the contralateral hemisphere. We focus on regions associated with executive functions (e.g., attention, cognitive flexibility, task-switching), and examine the frontoparietal network (FPN) which supports these higher-order cognitive processes. To that end, we developed a cross-modality pipeline for integrating data from two neuroimaging modalities: electrocorticography (ECoG) and resting-state functional MRI (rs-fMRI). ECoG captures local meso-scale neural activity from the cortical surface with uniquely high spatiotemporal resolution. rs-fMRI is used to characterize functional connectivity at the whole-brain scale. In our prior work we showed that tumor-infiltrated cortex participates in large-scale cognitive circuits (7). Here we expand this work to investigate healthy-appearing regions and laterality of connectivity patterns.

Data from 11 glioma patients were analyzed to assess local involvement in executive function and large-scale functional connectivity. ECoG and longitudinal rs-fMRI data were collected for each patient. ECoG was recorded from the frontal cortex during awake surgery while patients performed two counting tasks with varying cognitive demand to identify regions engaged in executive function (8). For each patient, 4–12 electrodes were placed on the tumor hemisphere (sampling rate: 10 kHz). Following preprocessing (re-referencing, line-noise filtering, down-sampling), changes in high gamma power (70-250 Hz) were computed per electrode, indicating local task-related activity. rs-fMRI BOLD data were collected before and at 3 months after surgery (Siemens Magnetom Prisma-fit 3T scanner, TR=1060 ms, TE=30 ms, 2 mm isotropic resolution, FOV=192x192 mm2, acquisition time: 9 min and 10 s) and pre-processed using Independent Component Analysis to remove noise. Seed-based connectivity maps were generated by correlating the fMRI time series of a 2.5 mm radius sphere around each electrode location with all other brain voxels, capturing individual whole-brain connectivity patterns (Fig. 1). Median connectivity with canonical resting-state networks was computed for each electrode (9).

Electrodes on both healthy-appearing and tumor-infiltrated cortex showed task-related high gamma activity, indicating engagement in executive function. Before surgery, whole-brain connectivity with canonical networks was similar for electrodes on healthy-appearing and tumor-infiltrated cortex. Hemispheric differences were observed when examining connectivity with each hemisphere separately. Functional connectivity with the FPN, where 62% (33/53) of the electrodes placed on healthy-appearing cortex were located, was significantly larger in the tumor hemisphere than the contralateral side (Fig. 2A). This asymmetry was primarily driven by electrodes that were task-responsive or located within the FPN (Fig. 3). Postoperatively, this hemispheric difference in FPN connectivity was no longer present (Fig. 2B; mixed linear ANOVA model, interaction between time and hemisphere, p<0.05).

Our findings demonstrate that gliomas alter functional connectivity patterns, and that tumor resection leads to reorganization of these patterns at the whole-brain level. We observed asymmetry in connectivity preoperatively, particularly with the FPN, which was absent postoperatively, suggesting network reorganization. The preoperative asymmetry may reflect either compensatory processes or abnormal disruption that occur during tumor growth. Glioma patients often exhibit cognitive impairments (10), and further research is needed to shed light on how alterations in network connectivity relate to behavior and cognitive outcomes following surgery.

This study highlights the value of cross-modality integration of ECoG and fMRI to map functional networks in glioma patients and advance our understanding of brain reorganization caused by tumors and their removal. Our approach and findings may lead to the development of patient-tailored treatment and rehabilitation strategies.
Chemda WIENER, Ayan MANDAL, Moataz ASSEM, Rafael ROMERO-GARCIA, Pedro COELHO, Alexa MCDONALD, Emma WOODBERRY, Michael HART, Stephen PRICE, Robert MORRIS, John SUCKLING, John DUNCAN, Thomas SANTARIUS, Yaara EREZ (Ramat-Gan, Israel)
Espace Vieux-Port

"Friday 10 October"

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D24
14:00 - 15:30

FT1 LT - Hardware technology

Chairpersons: Özlem  IPEK (PhD), Martin MEYERSPEER (Chairperson, Vienna, Austria)
FT1: Cycle of Technology
14:00 - 14:02 #45680 - PG169 A unipolar high-performance head gradient for high-field MRI without encoding ambiguity.
PG169 A unipolar high-performance head gradient for high-field MRI without encoding ambiguity.

Gradient coils for the z-axis traditionally follow the principle of a Maxwell pair, comprising two sections that generate field of the same spatial structure but opposite polarity [1,2]. The two field lobes superimpose to form a bipolar field with a zero in the iso-centre and a surrounding linear range (Fig. 1B). Outside this range the field reaches maximum excursions, beyond which it gradually drops back to zero, causing ambiguity of gradient encoding. To prevent the related backfolding, the unambiguous range must be made sufficiently long [1]. However, this comes at great expense in terms of gradient performance [2,3]. Therefore, the range required to prevent backfolding is commonly contained by limiting the spatial coverage of RF transmission and detection [4]. While long-established for clinical whole-body systems, this approach to gradient ambiguity is less favourable for cutting-edge brain imaging, which increasingly relies on field strengths of 7T and beyond, where RF fields are less contained. At the same time, advanced neuro-MRI demands ever-higher gradient performance, which is increasingly implemented through head-only gradients [5-23]. These, in turn have intrinsically smaller unambiguous range, and high-field imaging with head gradients has indeed been reported to suffer from backfolding [24-27]. To address this issue, the present work demonstrates an alternative approach to gradient ambiguity. It takes advantage of the fact that, when imaging the head, ambiguity is of concern only on one side of the imaging volume. Gradient encoding without any ambiguity can thus be performed with a unipolar rather than bipolar z-gradient field, effectively reducing the Maxwell pair to one of its halves (Fig. 1C) [28]. This concept is implemented for a high-performance head gradient at 7T. The absence of any backfolding is verified experimentally.

A head gradient with unipolar design was developed for a Philips 7T system (Fig. 2A). It is operated with the available standard environment, including a dual-mode amplifier (Copley 787). A free bore diameter of 39 cm accommodates typical head coils and a conical opening provides appropriate patient access [17]. In the linearity volume (LV) of 22x22x20 cm3 the deviation in gradient strength is < 20%. Maximum gradient strength and slew rate are 200 mT/m and 560 T/m/s. Optimisation of a z-gradient with unipolar design within the given constraints led to the field shown in Fig. 1C. As a side effect, the design introduces an additional field offset in the imaging volume. For the xy-dimensions a conventional bipolar design was employed. To contain current density, a system of double layers of conductors was chosen. Cooling is based on a combination of hollow and solid conductors. Figs. 2B-C show the completed gradient. The software of the scanner was modified to address the field offset associated with the unipolar design by an equivalent off-centre in the z-dimension, corresponding to modulation and demodulation of RF signals. In addition, preparation procedures, image reconstruction, and image processing were adapted accordingly. To investigate the ambiguity issue, imaging was performed with a large FOV in phantoms and in vivo using an RF transmit-receive quadrature birdcage head coil (Nova Medical). Gradient non-linearity (NL) correction was applied based on calculated field maps [29].

Imaging with the unipolar gradient was successfully performed. The phantom and in vivo experiments in Figs. 3 and 4 demonstrate that with the unipolar gradient design no backfolding occurs from the neck and trunk region into the LV.

Relative to conventional gradients, one practical consequence of the unipolar design is the need to consider the introduced field offset during different parts of the MR procedure. The efforts and implications of these changes will strongly depend on the structure, implementation, and accessibility of the software of the particular MRI scanner. Another consequence is greater maximum field strength, created in the signal-free range. Somewhat counter-intuitively it was found, that the higher field maximum does not prevent clearly competitive performance with the bipolar design. Moreover, the higher maximum field may raise concerns regarding PNS. That is offset, however, by the fact that the maximum occurs only on one side and well outside the subject. Nevertheless, PNS is potentially increased at the top of the head. For the neck and shoulders, the unipolar approach is expected to reduce PNS. Initial testing indicated a rather benign PNS behaviour.

A unipolar gradient design was demonstrated that for head gradients fundamentally solves the ambiguity issue of the commonly used bipolar fields. Thus, gradient and RF coil development are disentangled. The prospect of gradient systems based on this sort of design holds promise for all advanced neuroimaging that demands high gradient performance, and will make the greatest difference at 7T and beyond.
Markus WEIGER (Zurich, Switzerland), Overweg JOHAN, Franciszek HENNEL, Emily Louise BAADSVIK, Samuel BIANCHI, Björkqvist OSKAR, Roger LUECHINGER, Metzger JENS, Michael ERIC, Thomas SCHMID, Lauro SINGENBERGER, Urs STURZENEGGER, Erik OSKAM, Gerrit VISSERS, Jos KOONEN, Wout SCHUTH, Jeroen KOELEMAN, Martino BORGO, Klaas Paul PRUESSMANN
14:02 - 14:04 #47897 - PG170 Development of LNA for multichannel coil array in low-field MRI.
PG170 Development of LNA for multichannel coil array in low-field MRI.

Development of modern low-field MRI systems depends on efficient high-quality electronics to achieve a high signal-to-noise ratio (SNR) in the resulting image. First stage of the MR-scanner receive chain - low-noise amplifier (LNA) - has a significant impact on received signal SNR. LNAs existing on a market are available for the frequencies down to 19 MHz [1]. The closest specific amplifier for low-field MRI were described in papers [2,3], where authors demonstrated a 32 MHz LNA. Attention to lower frequency ranges has grown with the recent raise of interest to low-field MRI systems including portable configurations [4,5]. Recent hardware advances improved image quality making imaging at lower field strength clinically relevant and feasible [6]. In work [7] it was shown that using a low input impedance amplifier allows to decrease mutual coupling between coil elements of an array. In this work we aimed to develop a simple and low-cost LNA with low input impedance that could be used for 0.5T (21.2 MHz) and 0.07T (3MHz) low-field systems.

The computer-aided engineering CAE simulation software was used to numerically optimize the design of an LNA. The amplifier circuit consists of two stages based on the BFR193F [8] bipolar junction transistor (BJT). First stage of the amplifier contains BJT in a common-base (CB) configuration, which provides low input impedance and ensures a 50 Ohm impedance match at the output. The second stage of the amplifier is implemented using the same BJT transistor in a common-emitter (CE) circuit, ensuring sufficient gain and 50 Ohm matching both at the input and output. To enhance the stability of the common-base circuit a resistor was added in series with radiofrequency (RF) choke. For the second stage resistive feedback and inductive degeneration were applied to achieve unconditional stability of the amplifier. By numerical simulations of 3 MHz (Fig.1) and 21.20 MHz amplifier circuits (Fig. 2) S-parameters, noise figure (NF) and stability characteristics K of the amplifier were calculated. For experimental evaluations, a prototype of the 0.50 T (21.20 MHz) amplifier was assembled to verify numerical results. The vector network analyzer (VNA) OBZOR TR1300/1 was used for S-parameters measurements and LNA adjustment. Noise figure measurements were performed with Agilent N8973A noise figure analyzer.

As a result of numerical simulations, two amplifier configurations operating at 3 MHz and 21.20 MHz were obtained. According to the results of numerical simulations the 3 MHz LNA has 53.30 dB gain, 5 Ohm input impedance, -25.70 dB reflection coefficient at the output, 0.84 dB noise figure (Fig. 3), 20 dBm input compression point (P1dB) and K-factor greater than 22. The 21.20 MHz LNA has 47.22 dB gain, 5 Ohm input impedance, -39.50 dB reflection coefficient at the output, 0.82 dB noise figure (Fig. 4), 17.78 dBm input compression point (P1dB) and K-factor greater than 14 according to the numerical results. To validate the results of numerical simulations a prototype of the 21.20 MHz amplifier was assembled. Experimentally obtained S-parameters have slight differences compared to numerical results. The prototype gain is 1 dB lower than predicted due to parasitic parameters of real components. Reflection coefficient is equal to -18.89 dB, difference compared to -39.50 dB in simulation is due to home-made inductance for output impedance matching. The measured value of the noise figure is 0.74 dB (0.08 dB better than in simulation).

The measured 21.20 MHz LNA characteristics are in good agreement with numerical data. Compared to the closest commercial WanTcom amplifier (19 MHz) developed 21.20 MHz LNA has higher gain (28 dB for WanTcom vs 42.77 dB for 21.20 MHz). However, commercial amplifier outperforms the proposed design in NF value (0.50 dB for WanTcom vs 0.80 dB for 21.20 MHz) and input impedance (1.80 + 0j Ohm for WanTcom vs 5.20 + 2j Ohm for 21.20 MHz) which improves coil array decoupling.

In this work two LNAs based on a common base first stage circuit using low-cost BFR-193 BJT operating at 3 MHz and 21.2 MHz were developed. The prototype of the 21.20 MHz amplifier demonstrates 5.2 + 2j Ohm input impedance, 0.80 dB noise figure and 24 dBm P1db. The numerical model of the 3 MHz amplifier have shown 5 Ohm input impedance, 0.84 dB noise figure and 20 dBm P1dB. Characteristics of the 21.20 MHz amplifier are comparable to modern commercial WanTcom amplifier. The designed amplifiers provide cost-effective solutions for low-field MRI receivers making such scanners more accessible. Within our near future plans is refinement of amplifier prototypes and release of final models as open source project. - This work was supported by state assignment No. FSER-2025-0018 within the framework of the national project “Science and Universities" -
Mikhail MURZIN (St. Petersburg, Russia), Aleksei NASONOV, Anna HURSHKAINEN, Georgiy SOLOMAKHA
14:04 - 14:06 #45835 - PG171 Development of a transducer system for MR Elastography at 3T and 7T.
PG171 Development of a transducer system for MR Elastography at 3T and 7T.

Magnetic Resonance Elastography (MRE) is a technique for assessing tissue stiffness [1], used to detect disease-related changes in mechanical properties of tissues, especially in cardiac MRE (cMRE), where myocardial stiffness provides a marker for evaluating heart function[2]. This transducer is featuring a rotating unbalance, driven by a turbine and compressed air, all inherently MR safe, no metals or conducting materials are used. Adding mass by inserting up to six rods, sufficient actuation force can be generated to produce detectable displacements deep in the body. It is designed to be flat to fit in between the patient and the coil. Increased transducer height extends the distance from the coil to the region of interest, reducing MR signal strength. While prior transducer designs have incorporated flat profiles, variable masses [3], or pneumatic actuation [4], no solution has yet integrated all these features into a single compact device.

The transducer prototype uses the principle of a rotating unbalance to generate vibration. It consists of a 3D printed turbine connected to two unbalances with slots for exchangeable masses. These are placed between four ceramic bearings, which are all placed in a CNC milled case. Plastic connectors guide pressurized air from and to the turbine. A fiber optic sensor is used to measure the rotation frequency of the transducer. The transducer is controlled by a control-unit which consists of a proportional valve, a pressure sensor, a microcontroller and a data-acquisition card (DAQ). A PID controller is constantly updating the valve position to control the rotation speed. This concept allows to vary frequency and generated vibration force independent from each other. Frequency can be controlled via input pressure and force via the weight configurations. Also, in-scanner measurements were performed to test both the transducer as well as an in-house modified FLASH with motion encoding gradients (MEG). Scanner measurements were performed at a Siemens (Siemens Healthineers, Erlangen, Germany) 3T (PrismaFIT, spine array and body-18 matrix coils, TR/TE: 60/6ms , FOV: 380 mm, 3 mm voxel isotropic, 8 wave phases) and 7T (MAGNETOM 7T Plus, 2 channel dipoles array (RAPID Biomedical, Rimpar Germany, TR/TE 60/6ms: , FOV: 380 mm, 3 mm voxel isotropic, 12 wave phases). For all tests an ultrasound gel phantom (Ultragel Medical Kft., Hungary) with a known shear modulus of 0.9 kPa [5] was used. The transducer was set to 50 Hz. Shear stiffness maps were calculated with the k-MDEV inversion method in the BIOQIC [6] elastography tool.

All parts of the developed transducer prototype can be seen in Figure 1, as well as the unbalance with variable masses and the control unit. For performance evaluation the frequency was measured over 15 min of rotation was 49.99 ± 0.24 Hz, showing a very accurate control. The pipeline where elastograms of the complex shear modulus are depicted can be seen in Figure 3 and Figure 4.

This study shows advancements in developing a new MRE transducer. It shows very stable rotation speeds, tested between 20-100 Hz, excellent compatibility in the MR environment, as well as connectivity with the scanner. The elastograms show similar values in the phantom when compared with known data from literature [5]. The system performed both in 3T and 7T environment. Once IRB approval is obtained, in vivo performance will be evaluated.

Here, a functional prototype for a novel MR elastography transducer was presented. Most importantly, it allows independent changes in amplitude and speed and fits between coil and patients thus increasing the flexibility of applications. Its MRE performance was demonstrated both at 3T and 7T.
Lorenz KISS (Vienna, Austria), Christopher BREITENFELDER, Stefan WAMPL, Marcos WOLF, Hodul ANDREAS, Quang NGUYEN, Martin MEYERSPEER, Albrecht Ingo SCHMID
14:06 - 14:08 #46875 - PG172 Investigating magnetic properties of 3D-printable materials at different field strengths using SQUID Magnetometry.
PG172 Investigating magnetic properties of 3D-printable materials at different field strengths using SQUID Magnetometry.

3D printing has become widely adopted across various aspects of MRI research. Its applications range from phantom construction to the manufacturing of gradient coils and other components, particularly in low-field MRI systems. Previous work that investigated the magnetic properties in the context of MRI has been carried out by placing the sample in an MRI scanner surrounded by deionized water with known magnetic susceptibility and then measuring the field distortion [1-3]. A limitation of this approach is that magnetic susceptibility measurements are confined to the B0 field strength of the MRI scanner being used. While 3D-printing plastics are generally known to be diamagnetic, the presence of contaminants, such as colorants or composite materials, can result in field-dependent magnetic susceptibility. Far below the saturation field strength of ferromagnetic contaminants, the susceptibility can be shifted significantly towards positive values, while above the saturation field strength the diamagnetism of the bulk polymer dominates the magnetic properties of the 3D-printed materials. To investigate this field-dependent magnetic behavior, SQUID (Superconducting Quantum Interference) magnetometry was used due to the high sensitivity and the ability to vary the field strength when measuring the magnetic moment of the samples.

Samples The materials were selected to cover a range of materials commonly used in MRI applications (Table 1). Two different types of 3D-printing techniques were investigated: - Fused Deposit Modeling (FDM) samples were printed on a large-volume 3D printer (V-Core 4.0 500mm, RatRig, Faro, Portugal) using both a 0.4mm brass nozzle and a 0.4mm hardened steel nozzle for abrasive materials. The infill was set to 100% and the layer height to 0.2mm. - Additionally, a 3D printable resin sample was produced using a resin 3D printer (LD-002R, Creality, Shenzen, China). All samples were designed as cylinders with a height of 6mm and a diameter of 5.6mm. Magnetometry A SQUID magnetometer (MPMS XL, Quantum Design, San Diego, USA) was used to carry out the measurements. The samples were mounted in a SQUID magnetometry sample holder and secured using thin cotton strings(Figure 1). All measurements were conducted at 300K in a temperature-controlled environment. The hysteresis loop was measured from -3T to 3T, with variable step sizes around the zero transition. The volume susceptibility was then calculated from the magnetic moment. The calculated volume susceptibility was the compared to an existing open database of 3D-printable materials (MaDaMEPro) [4].

Figure 2 shows the hysteresis loop of a collection of 3D printed samples with and without ferromagnetic contaminants. Commonly used materials such as PLA red and PETG CF exhibit a field-dependent magnetic susceptibility, while the other samples show a more linear behavior. Table 2 shows the volume susceptibility of the samples at different field strengths and the deviation from the literature. Significant deviations at lower field strengths can be observed for contaminated samples.

SQUID magnetometry revealed the presence of ferromagnetic contaminants within several 3D-printed samples (Figure 2). Of particular interest is the behavior of the red PLA sample, as this material is frequently used in MRI applications. At B0 field strengths of 50mT, typical for low-field MRI scanners, the bulk behavior of the samples exhibits a positive magnetic susceptibility. This contrasts with the expected diamagnetic behavior of materials commonly used in 3D printing and contradicts existing literature values where diamagnetic behavior observed at higher field strengths is extrapolated to lower B0 field strengths [1]. When comparing susceptibility values with the literature, several factors must be considered. Neither the materials nor the printers used are identical to those referenced in the literature, making direct comparisons of absolute values problematic. However, the relative susceptibility values are comparable and demonstrate clear deviations for samples containing ferromagnetic contaminations at lower field strengths (Table 2). Future research will investigate whether these significant deviations from water's volume susceptibility can influence image quality at lower MRI field strengths. This will involve printing MRI phantoms using different materials and imaging them on a low-field (50mT) MRI scanner. Additionally simulations will be carried out to observe the effect of different levels of contaminants at different B0 field strengths.

Samples that are widely used in MRI exhibit quasi-ferromagnetic behavior at lower field strengths. Further investigation will be carried out to determine if the contaminations might have an effect on the MRI image. For the moment, the results indicate that caution should be taken when using colored or compound materials in low-field MRI applications.
Julia PFITZER (Graz, Austria), Jakob RATZENBERGER, Marc RUOSS, Martin UECKER, Hermann SCHARFETTER
14:08 - 14:10 #47685 - PG173 Differentiable dipole-based optimization of permanent magnets for homogeneous b0 fields in low-field mri.
PG173 Differentiable dipole-based optimization of permanent magnets for homogeneous b0 fields in low-field mri.

Permanent magnet based Low-field MRI systems have attracted growing interest thanks to their affordability and ongoing performance gains. However, image quality is often limited by inadequate B0 homogeneity, arising from complex, nonlinear interactions among thousands of permanent magnets. Although permanent magnets are low-cost and maintenance-free [1-2], designing such large assemblies poses a high-dimensional optimization and manufacturing challenge. Achieving a high field uniformity needed for diagnostic imaging demands both computationally efficient algorithms and practical manufacturability. Previous approaches—ranging from genetic algorithms tuning discrete magnet parameters [3] to reinforcement-learning heuristics [4]—rely on predefined, discretized design spaces. In this work, we introduce a fully differentiable framework that treats magnet positions, orientations, and sizes as continuous variables. While our method can optimize all positional and rotational degrees of freedom, we here illustrate its use on angular-orientation optimization. By leveraging gradient-based updates across the entire assembly, our approach achieves finer control of B0 homogeneity and enables more scalable exploration of permanent-magnet designs for low-field MRI.

Each magnet in a permanent magnet-based low-field MRI system can be represented by size, shape, orientation, material properties, and magnetization strength. Multiphysics simulations such as CST [5] or COMSOL [6] use finite-element and boundary-element discretizations to compute magnetic fields accurately, but their reliance on non-differentiable computations complicates direct integration with fast optimization methods. In our differential optimization framework we make the assumption of relatively small magnets compared to the radial distance from the center of the volume of interest (VOI), allowing us to model each magnet as a single magnetic dipole moment [3,7,8]. Under this model, the Biot-Savart law [9] provides a differentiable, closed-form mapping. In contrast, heuristic methods—genetic algorithms [3] and reinforcement learning [4]—rely on discrete parameter searches that limit design generalisability. We formulate a continuous optimization to minimize field inhomogeneity within a spherical VOI by tuning each magnet’s in-plane and out-of-plane rotation (Image 3, right). For the results at hand, we utilized the Adam optimizer [10], though any optimizer based on gradient descent is applicable with our proposed approach. We initialized the optimizer with 10 different learning rates ranging from 0.001 to 0.01. As a baseline comparison, we simulate a handcrafted Halbach-array assembly, consisting of 14 concentric layers of 3 rings (Image 3, left) and designed to generate approximately 50 mT within a 20 cm-diameter VOI for human-head imaging. We assess performance with two loss metrics: direct homogeneity (min-max variation of the field) and mean squared error (MSE) against a target field. Each optimization executes 1000 iterations, empirically sufficient for convergence. The proposed framework can integrate additional objectives, manufacturing constraints, or alternative geometries for permanent-magnet MRI design.

The initial homogeneity of the handcrafted system was 96197 ppm within a 20 cm diameter VOI, with an average field strength of 52.37 mT. After optimization, homogeneity improved to 8588±1495ppm, while the field strength slightly decreased to 44.43 ± 0.63 mT — a 15.16 % reduction. This corresponds to an 11.2-fold improvement in homogeneity. In a separate MSE optimization targeting 50 mT, homogeneity improved to 33281±1907 ppm, with a field strength of 49.989 ± 0.002 mT, yielding a 2.89-fold improvement. All optimizations converged within 1000 iterations. Detailed results are shown in Images 1 and 2.

The proposed differentiable optimization framework significantly enhances magnetic field homogeneity in low-field MRI. Applied to our handcrafted Halbach-array baseline, it converged within 1000 iterations to achieve an 11.2-fold homogeneity improvement while maintaining field strengths close to the target range. By treating magnet parameters as continuous variables, our method flexibly optimizes objectives such as maximizing field strength, improving homogeneity, or achieving a uniform target field across the VOI. Moreover, the differentiable formulation enables rapid exploration of alternative system architectures and magnet distributions. To illustrate versatility, we also optimized a handcrafted Moebius-strip configuration (Image 4), demonstrating adaptability to varied geometries.

We present a novel, differentiable optimization framework for the design of permanent magnet arrays in low-field MRI. This method allows efficient and accurate optimization of field homogeneity and strength, adaptable to a wide range of initial configurations and system goals. By offering flexibility and robustness, it holds great potential for advancing MRI technologies.
Kostiantyn LAVRONENKO (Aachen, Germany), Marcel OCHSENDORF, Julian THULL, Schulz VOLKMAR
14:10 - 14:12 #46445 - PG174 A novel 64-channel ultra-flexible RF coil for enhanced prostate, rectal and pelvis imaging.
PG174 A novel 64-channel ultra-flexible RF coil for enhanced prostate, rectal and pelvis imaging.

Current RF coils for prostate and pelvic imaging struggle with limited depth sensitivity and coverage, especially across different body sizes. These limitations reduce diagnostic accuracy [1]. Previous solutions, such as endorectal coils, offer proximity to the prostate but compromise patient comfort and do not cover larger regions accurately [2-4]. The 50-channel coil described in [5] has shown improvements, with SNR increased by ~36% with respect to a previous 30-channel model. However, further enhancements are needed not only for a better SNR, but also depth and reliability. This study addresses these challenges by developing a novel 64-channel coil with an optimized design to enhance imaging across a wide range of patient anatomies using AIR Technology [6,7].

We designed an ultra-flexible 64-channel coil for imaging the pelvic, rectal, and prostate areas, accommodating body sizes from the 5th percentile female to the 95th percentile male. The array consists of two identical halves (posterior/anterior) connected at the perineum by an adjustable strip. Each half includes linear and staggered regions with 26 loops (10.6 cm) and 6 loops (14.4 cm), enhancing signal strength and depth. We used flexible AIR Technology loops with critical overlap [8], as well as overlaps ranging from 15% to 30%, enabling optimal decoupling with the help of preamplifiers. A 95th percentile male phantom was modeled in HFSS (Figures 1a and 1b) and the wrap was simulated in Blender for validation (Figures 1c and 1d). To fabricate the coil array, we first mapped each half on the fabric and proposed a path for the wiring of all the loops. We then sewed the loops using both tack and zigzag stitching, placed the associated electronics and wiring, and added floating cable traps to help filter common-mode noise (Figure 2a). We then tested all the loops in each half and added Nanonomex fabric layers to protect the coil elements (Figure 2b). After that, we sewed the external Dartex layers and incorporated the adjustable strips (Figures 2c and 2d). Finally, we tested the coil array on a 3.0 T SIGNA Architect Scanner (Hospital Politécnico y Universitario La Fe, Valencia, Spain) using a protocol for the prostate area, to verify loop functionality. Additionally, we conducted thermal tests using a Fluke infrared temperature gun to ensure compliance with temperature standards. Then, we performed phantom scans and the first in vivo tests.

The high flexibility of the coil array enables it to conform easily to pelvic anatomy. Phantom imaging (Figures 3a-3c) confirmed that all loops within the array were working. Thermal testing recorded maximum temperatures below 34 °C, remaining well within safety thresholds for both patient-contact components (41 °C) and those handled by technicians (48 °C). Additionally, the noise covariance map for the 64-channel coil is presented in Figure 3d, observing that channel 14 exhibited noise levels significantly higher than the rest. Finally, initial in vivo tests are shown in Figures 4a and 4b.

The 64-channel ultra-flexible coil array offers a high degree of anatomical conformity, effectively covering up to the 95th percentile of the male population. Its mechanical flexibility and design improve patient comfort by eliminating the need for complex lateral closures and incorporating an adjustable perineal support, ensuring a close fit across a broad range of body types.In addition, the thermal measurements ensure the coil to remain within clinical safety thresholds. Phantom scans confirmed that the coil operated correctly overall, with the exception of channel 14, which exhibited excessive noise. A more detailed evaluation will determine whether replacement is necessary. Nevertheless, this loop is located on the lateral side of the array, making its contribution less critical than that of other elements. Aside from this, in vivo scans acquired with the 3.0 T SIGNA Architect Scanner demonstrate promising results in image quality when compared to the current coil, which combines a posterior spine coil and an MP anterior coil. These preliminary findings suggest that the proposed array could offer increased diagnostic capability in prostate, rectal, and pelvic imaging, considering also that the sequence has not been optimized for the new coil yet. Moreover, the data collected will be evaluated soon more in-depth to define coil sensitivity, penetration depth, and overall performance.

This study presents a novel, high-density, ultra-flexible RF coil array specifically designed for prostate, rectal, and pelvic imaging. The array demonstrates strong anatomical adaptability and improved patient ergonomics. Early phantom and in vivo imaging results reveal encouraging image quality compared to the standard clinical coils currently in use. These results support the feasibility of implementing this coil in clinical settings and motivate further analysis into its performance metrics and diagnostic benefits.
Jesús CONEJERO (Valencia, Spain), Jana VINCENT, José Miguel ALGARÍN, Edward BAUS, María De La Luz JURADO-GÓMEZ, José DE ARCOS, Arnaud GUIDON, Victor TARACILA, Fraser ROBB, Leonor CERDÁ-ALBERICH, Luis MARTÍ-BONMATÍ, Joseba ALONSO
14:12 - 14:14 #47899 - PG175 A wireless quadrature Rx-only coil based on electromagnetically decoupled Helmholtz resonators for 1.5T MR mammography.
PG175 A wireless quadrature Rx-only coil based on electromagnetically decoupled Helmholtz resonators for 1.5T MR mammography.

Inductively coupled (IC) wireless radiofrequency (RF) coils are intensively studied in the recent years due to customer benefits such as absence of vendor-specific interfaces as well as increased safety performance caused by the absence of cable connections [1-4]. Moreover, IC wireless coils have cost-efficient configurations due to no need of low-noise non-magnetic receive electronics and proprietary connectors. IC wireless coil operational principle is based on inductive coupling with transceiver body coil of MR scanner. Dedicated breast IC wireless coils are of special interest due to the low availability of breast coils in clinical practice. Therefore, several solutions are available to the moment [1,3] showing promising results in the context of MR mammography. These solutions are based on the sets of coupled volume resonators covering the targeted ROI of human breast. Though the results obtained with coupled resonators are interesting, there is still a room for improvements in the context of IC wireless coil receive sensitivity (SNR). Moreover, the known wireless coils for breast imaging operate as transceiver (Tx/Rx) coils and the standard clinical workflow is violated due to the need of manual reference voltage calibration. In this work, we demonstrate the first receive-only (Rx-only) quadrature wireless coil for bilateral breast imaging at 1.5T. Two pairs of decoupled Helmholz-type resonators are employed having additional benefit as side access to breast tissues. The Rx-only operation is due to the passive decoupling diode circuits. The quadrature coil is compared with the linear configuration by numerical simulations and phantom MR imaging. In-vivo study of healthy volunteer at 1.5T scanner was performed showing high potential of using such coil in clinical MR mammography.

The developed coil consists of two pairs of Helmholtz resonators forming a bilateral configuration (Fig. 1a). One pair of Helmholtz resonators (Y resonators) has mostly vertical magnetic field component, the other one (X resonators) – horizontal component. Each resonator is basically inductively coupled to the neighboring one. It was shown earlier that compensation of mutual inductance between volume resonators leads to an increase in transmit efficiency of wireless breast coil [5]. Therefore, in the proposed wireless coil decoupling elements were used to compensate the mutual inductance (Fig.1a). In order to avoid the manual reference voltage calibration and ensure standard clinical workflow, passive detuning circuits were used (5 in Fig.1a). The equivalent circuit of the wireless coil is shown in Fig.1b. Numerical simulations are performed in CST Microwave Studio 2022. The coil was simulated together with transceiver birdcage coil (Fig.2a) and a homogeneous phantom (ε = 70, σ = 0.19 S/m for the breast, and ε = 78, σ = 0.45 S/m for the body). Both linear and quadrature configurations of wireless coil were simulated. MRI experiments were performed on a 1.5 T Siemens MAGNETOM Espree. In order to demonstrate the increase in SNR due to quadrature configuration, experiments with a homogenous phantom were carried out for two setups: bilateral linear coil with two Y resonators (Fig.3a) and for the bilateral quadrature coil (Fig.3b). The flip angle (FA) maps were acquired by (GRE) acquisitions (TR/TE=2000/4.76 ms, FOV=323 × 323 mm2, thickness=3 mm, matrix=128 × 128, FA=45◦/90◦) using a double angle method [6]. The phantom images were obtained with same pulse sequence for FA=90◦. For experimental studies the Rx-only decoupled quadrature wireless coil was assembled shown in Fig.3b. In-vivo study setup included specially designed ergonomic case together with the coil shown in Fig.4c. Invivo images were acquired using the Rx-only decoupled quadrature wireless coil and a GRE sequence: FA=12◦, TR/TE=10.5/2.38 ms, FOV=361 × 374 mm2, matrix=352 × 340, and thickness=1 mm.

The simulated B1+/ - maps for linear and quadrature configurations are shown in Fig.2b. The mean |B1- | value in ROI for linear Rx-only coil is 1.3 uT and 2.43 uT for quadrature coil. In transmit mode the mean |B1+| value is 0.31 uT for linear coil, and 0.32 uT for the quadrature. The obtained experimental FA maps are shown in Fig.3c for linear Rx-only coil and for quadrature Rx-only coil (Fig.3c). The phantom images are presented in Fig.3 for linear coil(a) and for quadrature coil(b). The SNR value of linear coil is 552, and 912 for the quadrature coil. The obtained in-vivo image is shown in Fig.4d.

Due to the obtained numerical and experimental results the wireless coil works effectively as an Rx-only coil thanks to the passive detuning circuits. Moreover using the quadrature configuration allows to improve SNR in 1.7 times compared to linear coil.

This study demonstrates the first Rx-only quadrature wireless coil for bilateral breast imaging at 1.5T. The obtained results demonstrate the potential of using such a coil for MR mammography at platforms of different vendors.
Pavel TIKHONOV, Alexander FEDOTOV, Georgiy SOLOMAKHA, Anna HURSHKAINEN (St. Petersburg, Russia)
14:14 - 14:16 #46382 - PG176 Stretchable and flexible RF coils for extremity imaging in a portable, low-field MRI system.
PG176 Stretchable and flexible RF coils for extremity imaging in a portable, low-field MRI system.

Magnetic Resonance Imaging (MRI) at low magnetic field strengths offers significant advantages such as reduced equipment costs and increased portability, which helps improve access to MRI services. However, these systems often produce images of lower quality, mainly due to reduced signal-to-noise ratio (SNR), longer scan times, and decreased resolution [1-3]. Among the components that could significantly influence image quality is the radiofrequency (RF) coil [4]. This study explores the development and evaluation of flexible, stretchable RF coils tailored for a 72 mT MRI system [1], specifically designed to conform the wrist. The aim is to enhance both coil sensitivity and operational efficiency [5,6].

We constructed six solenoidal RF coils (Figures 1a-1f), each 12 cm long with a diameter of 7 cm, using Litz wire to provide flexibility and stretchability [5,6]. Four of the coils had ten turns made with different Litz wires, while the other two were designed with the most flexible wires maximizing the number of turns, taking advantage of the nearly negligible proximity effect at approximately 3 MHz [4,6]. To build the coils, we placed a 3D-printed mold with a wavy surface (1 cm peak-to-peak) over a sock containing a 3D-printed inner piece (Figure 2). The Litz wire was manually stitched to the sock at defined positions to maintain its stretchable structure. To evaluate performance, we measured the quality factor (Q) of the coils both in the testbench and inside a 72 mT portable MRI scanner [1]. Inside the scanner, Q was measured under unloaded and loaded conditions using different phantom volumes: 10 mL, 125 mL, and 500 mL. We compared these results to those of a standard solenoid coil used in the same MRI system (Figure 1g), which has 44 turns and measures 14.7 cm in length by 14.9 cm in diameter. Additionally, we calculated the coil efficiencies using a B1 calibration protocol, where the applied power (P) is 1.17 W, the gyromagnetic ratio is 42.56 MHz/T [7], and the excitation time corresponds to a 180º flip angle. Using these coils, we scanned the 500 mL phantom with identical sequences across all coils, adjusting only the RF pulse duration to ensure the same flip angle. In addition, we performed in vivo imaging using a RARE sequence on both the most efficient stretchable coil (Figure 1d) and the reference solenoid. The acquisition parameters were kept constant at 1.5×0.7×11.7 mm^3 resolution and a 30 kHz bandwidth.

Among the six stretchable prototypes, the coil shown in Figure 1d achieved the highest unloaded quality factor (Q = 161), while the standard coil had a slightly higher value (Q = 189). However, when loaded with the 500 mL phantom, both coils exhibited a similar Q of approximately 136. The stretchable coil from Figure 1d also demonstrated the highest efficiency at 271 μT/√W, outperforming the standard coil, which reached 120 μT/√W. All stretchable designs either matched or exceeded the efficiency of the reference solenoid, with values of 135, 120, 135, 164, and 181 μT/√W for the coils in Figures 1a, b, c, e, and f, respectively. Phantom imaging results are shown in Figure 3a, using the most efficient stretchable coil. Figures 3b and 3c illustrate the signal intensity profiles along the longitudinal and transverse directions of the phantom, captured with each of the seven coils. The stretchable coil from Figure 1d consistently produced the strongest signal. Additionally, in vivo scans using a volunteer (Figures 4a, 4b) showed visibly enhanced image quality when using the stretchable coil (Figure 4d) compared to the reference coil (Figure 4c), despite both scans lasting 10 minutes and having the same spatial resolution.

The improved efficiency of the stretchable coils is largely attributed to their ability to closely conform to the anatomy being imaged, which increases both the filling factor and overall sensitivity. This proximity to the target region results in better coil performance compared to the conventional solenoid. It should also be considered that the shorter length of the stretchable coils may play a role in this enhanced performance. Imaging experiments with phantoms and in vivo confirm that the proposed coil designs can generate stronger signals, suggesting a clear benefit for low-field MRI applications.

This study confirms that flexible and stretchable RF coils can significantly improve image quality in low-field MRI scans of the extremities, potentially aiding in more accurate diagnosis of injuries. Despite these advantages, some limitations remain, such as sensitivity to motion during scans and deformation of the coil geometry, which can affect the quality factor. Future work will address these issues by exploring auto-tuning mechanisms and using higher grade materials, such as polytetrafluoroethylene (PTFE) thread for stitching and new base materials to enhance the robustness and mechanical stability of the coil.
Jesús CONEJERO (Valencia, Spain), Teresa GUALLART-NAVAL, Pablo GARCÍA-CRISTÓBAL, Rubén BOSCH, Eduardo PALLÁS, Lucas SWISTUNOW, José Miguel ALGARÍN, Joseba ALONSO
14:16 - 14:18 #46969 - PG177 A new 9-channel ¹H, 3-channel ³¹P calf coil for interleaved multi-nuclear studies of skeletal muscle at 7 T.
PG177 A new 9-channel ¹H, 3-channel ³¹P calf coil for interleaved multi-nuclear studies of skeletal muscle at 7 T.

Magnetic resonance spectroscopy (MRS) is an established tool for dynamic exercise studies of muscle metabolism. Combining ³¹P and ¹H MRS enables a more comprehensive view of both oxidative [1] and glycolytic [2] metabolic regimes but requires dedicated RF hardware with high SNR for both nuclei and a strong and homogeneous transmit field. The coil design presented here combines three transceiver dipoles, to provide good ¹H excitation at 7 T, a three-element ³¹P transceiver array and a separate six-element ¹H receive-only loop array, to maximize ¹H sensitivity. Previously [3], we implemented and tested the ¹H part of this coil, demonstrating 3.8× and 1.3× higher ¹H SNR, respectively, on phantoms than our previous custom ³¹P/¹H calf coil [4] and a 28-channel ¹H-only reference coil (QED Knee coil, Siemens, Erlangen, Germany). Here we add the three-element ³¹P transceiver array and evaluate the finished coil’s ¹H and ³¹P performance on phantoms and demonstrate its applicability in vivo.

The newly-developed three-layer coil setup is shown in Fig. 1, along with a picture of the coil in its housing. In addition to the geometric decoupling achieved by the relative element positioning, LC and LCC traps were necessary to limit coupling between the ¹H and ³¹P elements. To evaluate the coil’s ¹H performance, flip-angle maps, GRE images (TR = 9.2 ms, TE = 4.24 ms) and noise-only scans were acquired with a homogeneous phantom using a 7 T MRI (Magnetom, Siemens Healthineers, Erlangen, Germany). SNR maps were calculated using the pseudo-multiple-replica-method [5]. The coil’s ³¹P SNR was evaluated on a phantom with 100 mmol/l K₂HPO₄ by acquiring localized spectra a using a semi-LASER sequence [6] (TR = 5 s, TE = 60 ms, 2500 Hz spectral width). The 50 x 25 x 50 mm³ voxel was positioned at a 45° angle, in a position mimicking the gastrocnemius medialis of the left leg. SNR was calculated as maximum signal over the standard deviation of 700 points of a noise-only region [7] and averaged over 100 scans. The results were compared to the previous custom ³¹P/¹H calf coil. To demonstrate the coil’s performance in vivo, a localized ¹H spectrum was acquired in resting gastrocnemius medialis of a healthy subject using STEAM [8] (TR = 3 s, TE = 5.68 ms, 32 acquisitions, VAPOR water suppression [9]). Additionally, phosphocreatine (PCr) and creatine CH₂ (Cr2) time courses were acquired with interleaved ¹H/³¹P MRS during a single rest-exercise-recovery protocol. This was performed using a DRESS ³¹P sequence [10] (acquisition delay = 6.7 ms) with 15 mm slab thickness and ¹H semi-LASER [6] (TE = 52 ms) with 15 × 15 × 25 mm³ voxel size. The subject performed two plantar flexion pushes between each acquisition (TR = 6 s) on an MR-compatible ergometer, the exercise was sustained for 5 minutes. The acquired spectra were phased per channel and combined with weighting by SNR, using an in-house python script. Spectra were quantified with AMARES [10] in jMRUI, fitting lipids, creatine CH₃, TMA and Cr2 at 3.95 ppm (as doublet) in the ¹H spectra, and PCr and Pi in the ³¹P spectra.

¹H B₁⁺ and SNR maps are shown in Fig. 2. For the depicted ROI, the new coil provides 2.8× higher ¹H SNR than the reference, as well as a stronger and more homogeneous transmit field. In the ³¹P phantom measurements, SNR was 471 ± 22 and 641 ± 26 for the new coil and the reference coil, respectively; thus the new coil's SNR was 27 % lower. An example in vivo ¹H STEAM spectrum from resting muscle and a time course of 31P DRESS spectra is shown in Fig. 3, along with the corresponding voxel and slab positions on a localizer image. Fig. 4 shows the time courses of PCr and Cr2 during rest, exercise and recovery from a single subject, with closely matching depletion kinetics, τ(PCr-d) = 37.0 ± 3.2 s, τ(Cr2-d) = 38.5 ± 2.8 s, and similar recovery time constants, τ(PCr-r) = 60 ± 3 s, τ(Cr2-r) = 75 ± 4 s.

The phantom data show that the new coil achieves a large ¹H SNR gain compared to the reference, as well as improved transmission. Its ³¹P SNR is lower due to the increased sample distance to accommodate the ¹H receive array and increased volume coverage, primarily in the z-direction. The ¹H spectrum and Cr2 time course demonstrate the coil’s capability to acquire high-quality spectra from small single voxels in vivo. The results shown in Fig. 4 highlight the coil’s suitability for the primary target applications of dynamic, interleaved ¹H/³¹P MRS. Future work will include a quantitative investigation of the coil’s performance on multiple subjects.

These results are very promising for future applications of the coil in advanced metabolic calf muscle studies. Combined with further sequence development, the strong ¹H performance will enable the quantification of metabolites with small concentrations and restricted visibility, such as lactate [2], generating new insights into metabolic processes at higher exercise intensities.
Veronika CAP (Vienna, Austria), Vasco Rafael Rocha DOS SANTOS, Kostiantyn REPNIN, Peter WOLF, Graham J KEMP, Roberta FRASS-KRIEGL, Martin MEYERSPEER
14:18 - 14:20 #46802 - PG178 An adaptive design of a hexagonally-structured artificial dielectric with a set of dipoles to tailor the local RF transmit field at 7T and 10.5T.
PG178 An adaptive design of a hexagonally-structured artificial dielectric with a set of dipoles to tailor the local RF transmit field at 7T and 10.5T.

One of the challenges at ultra-high field MRI is RF transmit field inhomogeneity that results in significant local signal drops and loss of diagnostic contrast. New metamaterial-based designs offer solutions to locally tailor the RF transmit field[1-5]. Our recent design[6] examined a new approach of an artificial dielectric (AD) comprising of a hexagonally-structured set of copper strips, that provides an efficient coverage and thus achieves high effective dielectric constant of the overall structure. Furthermore, our previous work[7,8] showed that an efficient metamaterial can be designed as a combination of a dielectric layer with a set of electric dipoles. In this study a design of AD and a combination of AD with a set of dipoles are studied. The length of the added dipoles was exploited to adaptively change the effective structure characteristics. Phantom simulations and measurements were performed at 7T and 10.5T MRI to demonstrate the achievable RF transmit increase with AD. In addition, in-vivo non-human primate scanning at 7T MRI was performed with the new AD to increase both the RF transmit efficiency and local signal-to-noise.

Artificial dielectric: The AD comprises of 2 shifted copper strips grids with a dielectric (relative permittivity, εr=2.6) in-between, that generates a network of capacitors. The hexagonally structured design was compared to a grid to demonstrate more efficient coverage and thus higher effective dielectric constant. Eigenmode solver was used to characterize the AD configuration and its resulting transverse-electric TE01 mode and its frequency. The εr of a dielectric with the same TE01 frequency as the AD was found. The dependence of the thickness of the middle dielectric layer on the effective permittivity of the AD was tested. For actual implementation a dual-shifted hexagonally-structured pattern was used to achieve effective relative permittivity of ~95. This setup included a dielectric layer of εr=2.6 with 400 microns thickness and dimensions of 128x174 mm2. Adaptive design of AD and a set of dipoles: A combined design of AD and a set of dipoles with various dipole lengths was studied. The dipole length of 30, 36, 50, 80 and 156 mm was examined in a setup with final dimensions of 128x174 mm2, realized as an array of 5x7, 4x7, 3x7, 2x7 and 1x7 dipole units, respectively (see Fig.2). The resulting TE01 frequency and the increase in the RF transmit field were examined. Experiments: GRE scans at 7T MRI with a setup comprising AD and a set of dipoles were performed to examine the effect of the dipole length on the local signal increase (including transmit and receive contribution). Phantom with brain mimicking tissue properties (εr=53, σ=0.3 S/m) was used. In-vivo non-human primate scanning was performed to improve the local signal-to-noise and the RF transmit efficiency at 7T MRI. Both experiments were performed with a knee coil. For our initial 10.5T work we utilized the 16Tx/80Rx head coil[9] and 16-rung shielded birdcage tune-up service coil (QED, Mayfield Village, Ohio, USA) available at all Siemens UHF sites[10]. Results with the head coil are shown, including B1 maps based on AFI[11].

Fig. 1A compares hexagonal and grid patterns of AD, demonstrating twice higher effective relative permittivity achieved with the hexagonal pattern. Fig. 1B shows that the same hexagonal structure can reach relative permittivity of >300 with dielectric layer of 100 microns (easily implemented with flexible PCB). Fig.2 shows eigenmode solver results for the combined AD and a set of dipoles. Shorter dipole length provides higher resonant frequency (and lower equivalent relative permittivity for the same dimensions dielectric with 7 mm thickness) and longer dipole length achieves lower resonant frequency (and higher equivalent relative permittivity). Fig. 3A shows the measured signal increase with a combined design of AD and a set of dipoles at 7T MRI, reaching an increase of 1.25-fold to 3.7-fold with the different dipole arrays. Since an array of the 156 mm dipoles (1x7 array) created a resonant structure at 298 MHz, it reached the maximal signal increase. Fig.3B shows that the same AD structure as in Fig.3A achieved maximal signal increase of 1.5-fold at 10.5T with the head coil setup. Finally, in-vivo scanning of the non-human primate showed local signal increase of 1.3-fold (Fig.4) and 10% reduction in reference amplitude.

A new hexagonally-structured AD provides compact and thin setup that can be easily incorporated in a realistic MRI environment. The AD setup was tested at 7T and 10.5T demonstrating a local increase of the RF transmit field. A combined design of AD with a set of dipoles can offer additional control over the resulting RF transmit increase, which can be used to tailor the field depending on the patient dimensions and different applications. Next steps will include careful evaluation of the SAR implications and the potential benefits at 10.5T.
Santosh K MAURYA, Alexander BRATCH, Edna FURMAN-HARAN, Evgeniya KORNILOV, Noam HAREL, Gregor ADRIANY, Rita SCHMIDT (Rehovot, Israel)
14:20 - 14:22 #47323 - PG179 Transceiver Coaxial-End Dipole Array for whole Brain and C-spine MRI at 9.4T.
PG179 Transceiver Coaxial-End Dipole Array for whole Brain and C-spine MRI at 9.4T.

Simultaneous brain and C-spine MRI at ultra-high fields (UHF, >7T) could provide more in-sights into the operation of the central nervous system. However, specially designed dedicated transmit (Tx) and receive (Rx) arrays are necessary to provide coverage over the whole region of interest. For combined head-neck imaging at 7T, recently, several loop-based transmit-only/receive-only (ToRo) (1) and transceiver (TxRx) (2,3) arrays have been proposed. Using loops for arrays requires many capacitors to be distributed along the loop to reduce SAR and sensitivity to the array loading. In this work, we designed a dual-row TxRx 16-channel coaxial-end dipole array to overcome these two issues. Our numerical and experimental results show that the proposed array can provide entire brain and C-spine coverage.

First, an anatomically shaped holder for a tight-fit array was designed (Fig.1A) using Siemens NX. Then, 16 coaxial-end dipoles (4) were distributed in two rows to cover the region of inter-est (i.e., brain and C-spine). For all numerical simulations, CST 2021 were used. Dipole ele-ments were constructed from a 1.6 mm diameter copper wire with 20 mm pieces of 50 Ohm coaxial cable with a 25 nH inductor in the end of coaxial. The ends of the dipoles were folded similarly to the dipoles in work (5) to reduce the dipoles' matching sensitivity to load variation. Duke and Ella voxel models were used for simulation. All array elements were matched to 50 Ohm using a CST Studio schematic module with an network of two series inductors and a par-allel capacitor. B1+, pSAR10g, COV, and SAR-efficiency were calculated for a set of CP-modes with different phase shifts between the array rows to define the best excitation mode. The array housing was 3D printed from polycarbonate material. Milled polycarbonate plates were used to create the coil housing (Fig.1C,D). 16 BNC connectors were placed in the bottom upper flange of the coil to connect it with the TxRx interface (Fig.1B). Dipole array elements were made using 1.6 mm thick copper wire. Coaxial ends were made using non-magnetic RG-405 cable. The coaxial ends and the matching networks used self-made inductors from 1.2 mm diameter copper wire. The matching network in the experiments was similar to the one used in the simulations. Two floating ground cable traps (6) were placed between the dipole input and the BNC connector to prevent the cable effect. A volunteer study was conducted after the array was constructed and tuned on-bench. All data were acquired using Siemens 9.4T full body scanner. In-vivo T1-weighted images were ac-quired using a 1 mm MPRAGE (7) (TR/TI=3.36 s/1.34 s, GRAPPA 2x2, matrix 364x242x192, adiabatic inversion pulse (HS4), FA=9°, BW=312 Hz/pixel). B1+ mapping was performed using the pre-saturated TurboFLASH (8) (TR/TE=10s/2.1ms, GRAPPA 2, FOV=380mmx262 mm, 28 sagittal slices of 3 mm thickness, base matrix size 64, in-plane resolution 6mmx6 mm, satura-tion FA=90°, excitation FA=8°, bandwidth=485 Hz/pixel). Based on the known reference volt-age, the acquired flip angle maps were converted into maps of B1+ per input power. The geo-metric distortion correction implemented by the vendor was applied to all reconstructed images to compensate for gradient non-linearity over the large field of view.

The fully measured S-matrix of the array loaded with volunteer head and chest at 400 MHz is presented in Fig.1E. Fig.2 shows numerically simulated B1+ for the Duke (A) and Ella (B) and different phase shifts between the array rows. The presented distribution shows that the pro-posed array can provide a sufficiently homogeneous excitation within the ROI. Figure 3 shows the effect of different phase shifts between the array rows on the mean B1+ over the ROI, COV, pSAR10g, and SAR efficiency, based on simulations. Measured B1+ and MPRAGE images are presented in Fig.4. For simplicity, measurements were done for a 0° phase shift b/wthe rows.

From the presented results, we can see that an increase in phase shift to 90° between the rows increases the mean B1+ in the ROI. However, this leads to an increase of the COV, i.e., a drop in field homogeneity over the ROI. According to the simulation results, the optimal phase shift is roughly 30°. It provides minimal COV and pSAR10g compared to all other phase shifts. Figure 4 shows that the proposed array can provide excitation of the whole brain and down to the C7 region. However, there are certain image artifacts due to motion, physiology, and B0 inhomogeneity in the neck/throat region. Advanced B0 shimming (9) and dynamic parallel transmission methods (10,11), such as kT points (12), could be used to improve excitation homogeneity in the future.

We designed, constructed, and evaluated a 16-channel coaxial-end transceiver array for combined brain and C-spine imaging at 9.4T numerically and experimentally. We obtained images of the whole brain and C-spine in the experimental study down to the C7 region.
Georgiy SOLOMAKHA (Tübingen, Germany), Felix GLANG, Markus MAY, Joshi WALZOG, Dario BOSCH, Klaus SCHEFFLER, Harald QUICK, Nikolai AVDIEVICH
14:22 - 14:24 #46096 - PG180 Optimization of SNR at Both Frequencies for an UHF Double-Tuned Array: 7T 32-Element Transceiver 31P/1H Loop/Dipole Human Head Array.
PG180 Optimization of SNR at Both Frequencies for an UHF Double-Tuned Array: 7T 32-Element Transceiver 31P/1H Loop/Dipole Human Head Array.

X-nuclei (13C,31P etc) MRI and MRS provide valuable information for biomedical research and can benefit from the SNR increase at ultra-high field (UHF, 7T and above). UHF, however, brings the necessity of local transmission (Tx) and reception (Rx) capabilities within the structure of the same double-tuned (DT) RF coil. Hence, in the case of the double-layer Tx-only/Rx-only (ToRo) design (1), the DT coil must include four layers (2 Tx and 2 Rx) interacting with each other. In practice, such a complicated design has rarely been used. Use of transceiver (TxRx) arrays greatly simplifies the DT array by decreasing the number of layers to two (2-5). Still, to minimize interaction, often 1H-layer is moved away from the sample (2,3). This decreases the 1H SNR (2). Having good performance at both X and 1H frequencies is very important. Recently, we demonstrated that by placing both the 1H and 31P loop arrays into the same tight-fitting layer preserves the 1H Tx-efficiency and central SNR (5). However, we had to reduce the total number of loops to 20. Further improvement in SNR requires more Rx elements, which is very difficult to realize using common loops due to the design complexity. At UHF, the array design can be greatly simplified by using 1H dipoles (6). Combining 8 TxRx loops (X-nuclei) with 8 TxRx dipoles (1H) for human head imaging has been reported at 9.4T (7) and 7T (8). In this work, we developed a novel UHF densely-populated tight-fitting loop/dipole DT array in which we increased the number of TxRx elements, all placed in one layer, to 32.

The developed 31P/1H 7T human head array consisted of two rows (2x8) of 16 31P loops (Figs.1A,1C) and 2x8 array of 1H dipoles (Figs.1B,1D). The entire coil measured 195 mm (left-right), 225 mm (posterior-anterior), and 210 mm (superior-inferior). Adjacent loops located in the same rows and different rows were decoupled by transformers and overlapping (Fig.1A), respectively. Coaxial-end dipole (9) measured 130 mm (without coaxial ends) in length. To minimize sensitivity of the resonance frequency to loading (10), the coaxial ends were moved away from the sample (Fig.1B). All reported data were acquired on a Siemens Magnetom 7T human MRI. The developed coil was compared to a commercial array coil (Rapid Biomedical) consisting of a multi-channel 31P Rx-array and quadrature TxRx 1H volume coil. Electromagnetic simulations were performed using CST Studio Suite 2024 (Dassault Systèmes) and the time-domain solver based on the finite integration technique. We used a human voxel model (Duke, ITIS Foundation). We evaluated Tx-efficiency (/√P) and SAR-efficiency (/√pSAR10g), where pSAR10g is peak SAR averaged over 10g of tissue (SCT Legacy averaging). As demonstrated previously (11), the Tx-performance of the 2x8 array is improved by a phase shift between the rows, which was also evaluated. In simulations, both arrays were evaluated separately (Figs.1A,1B).

Fig.2 shows examples of simulated B1+ maps and corresponding quantitative data for the Tx-performance. Introduction of a phase shift between the rows improves the Tx-performance at both frequencies. After constructing, we evaluated coupling between all the array elements (Figs.1E,1F) with strongest coupling measured between adjacent elements. Worst between adjacent 31P loops measured -15.6 dB (same row) and -14.1 dB (different rows). Worst between adjacent 1H dipoles measured -14.9 dB (same row) and -14.3 dB (different rows). Isolation between 31P loops and 1H dipoles at both frequencies measured -30 dB or better. Fig.3 shows GRE images and corresponding 1H SNR maps obtained on a healthy volunteer using the developed and commercial array coils. The developed array provided substantially (~5 times) higher SNR peripherally and ~1.2 times higher SNR near the center. Fig.4 demonstrates the X-nucleus performance for a 31P MRSI measurement on the same volunteer.

Despite the smaller number of Rx elements, the developed array provides similar 31P SNR to the commercial coil. At the same time, the new array greatly improves SNR at 1H frequency. Based on our experience, 2x8 transmit loop arrays can be well decoupled only at relatively high frequency, e.g. ~120 MHz and above, due to strong coupling between non-adjacent loop elements. This implies that at 7T, only 31P (possibly 7Li) arrays can be built using such a design. In addition, at 300 MHz, the performance of relatively short dipoles is sub-optimal in comparison to loops. At higher fields, e.g. >9.4T, 2x8 dipole arrays perform better (13). Also, more nuclei will exceed the 120 MHz limit.

We demonstrated feasibility of constructing of a densely-populated UHF human head DT array with 32 TxRx elements all placed in one layer. First results show comparable 31P SNR at the 31P-frequency and a substantial improvement of 1H SNR compared to the existing state-of-the art commercial coil. The developed design can be even more beneficial at higher magnetic fields.
Nikolai AVDIEVICH, Georgiy SOLOMAKHA (Tübingen, Germany), Felix GLANG, Tanja PLATT, Stephan ORZADA, Dario BOSCH, Mark LADD, Andreas KORZOWSKI, Klaus SCHEFLER
14:24 - 14:26 #45527 - PG181 Numerical Comparison of TxRx arrays for combined Brain and C-spine MR Imaging at 7T.
PG181 Numerical Comparison of TxRx arrays for combined Brain and C-spine MR Imaging at 7T.

Combined brain and C-spine imaging at 7T can provide more detailed insights into various pathologies of this body region by increasing SNR compared to clinical 3T MRI(1). However, RF excitation of this region requires a local Tx-array providing a homogeneous excitation over the entire ROI (~350 mm longitudinally), which is a very difficult task at ultra-high fields (UHF, B0≥7T) because of the strong inhomogeneity of Tx RF magnetic field, B1+. The B1+ inhomogeneity can be mitigated using multi-element and multi-row Tx arrays in conjunction with 3D RF shimming(2,3). Recently, several works attempted to extend the Tx-coverage over the brain and C-spine using different array designs consisting of striplines(4) and loops(5). Dipoles array elements were introduced about 10 years ago(6), are a alternative to loops and striplines with simplified design. Following the work(7), we developed a coaxial dipole array for brain imaging at 9.4T(8). The coaxial dipole antennas improved the current distribution along the dipole, decreased local SAR, and minimized the frequency shift due to variation in head sizes compared to the straight dipoles. Coaxial dipole design could be even further simplified using coaxial-end dipole design(9). In this work, we numerically compared three transceiver (TxRx) arrays for combined brain and C-spine MRI at 7T regarding their Tx-efficiency, SAR, excitation homogeneity, and SNR.

We compared three arrays: 16 coaxial-end dipoles, 8 striplines(4), and 8 loops(5). The coaxial-end dipole array consisted of elements distributed in two rows on surface of a holder. All dipole elements were made using 1.2 mm wire and short coaxial cables. The longitudinal length of the dipoles in the upper row was 225 mm, and in the bottom row, 145 mm. To reduce load sensitivity, the ends of the dipoles were folded and moved away from the load. The length of the folded part was 25 mm, and the length of the coaxial ends was 20 mm. Eight stripline elements were arranged in a 6+2 configuration, with six elements on the top row around the head and two in the C-spine region. Stripline element and array geometries were identical to those described in the work(4). The loop array was arranged in a similar 6+2 configuration. The number of capacitors, element size, and their position were similar to those described in (5). All numerical simulations were performed using CST 2021. Arrays were loaded with the Duke voxel model. All array elements were tuned and matched to 297.2 MHz. Isometric views of all three arrays are presented in Fig.1. All elements were matched to the -30 dB level. All arrays were evaluated using the CP-mode excitation. The coefficient of variation (COV) was used as a metric for B1+ field homogeneity. For this, magnetic field distributions were exported to MATLAB 2024, where the mean and standard deviation of B1+ were computed over a region that includes the whole brain and C-spine down to C7 (“ROI”), and for the C1-C7 region only (“SC”). SNR calculations were made using the sum-of-squares method(10).

Simulated B1+ in the central sagittal slice of the Duke are presented in Fig.2. Dipoles improved B1+ performance compared to the stripline and loop arrays. The over ROI was 1.28 times higher than for striplines and 1.05 times higher than for loops. The over “SC” was 2.04 times higher than for striplines and 1.74 times higher than for loops. The pSAR10g values were similar for the dipole and loop arrays (0.339 and 0.325 W/kg), while pSAR10g was ~4 times higher for the stripline array. SAR-eff., calculated over the whole ROI for loops and dipole, was very similar (0.674 and 0.646 μT/√W/kg), while for the stripline array, it was ~2 times lower (0.267 μT/√W/kg). All three arrays showed very similar performance in terms of COV over the whole ROI, where the striplines showed the lowest variation (COV = 0.288) and the loops configuration showed the highest variation (COV = 0.349). The numerically calculated SNR is presented in Fig.3. The dipole array showed a significant increase in mean SNR over the whole ROI compared to the stripline (2.64 times higher) and loop array (1.91 times higher).

The 16-channel folded-end dipole array outperforms other considered configurations of TxRx arrays for combined brain and C-spine imaging regarding Tx and SAR efficiency. In addition, the dipole array produces a significantly higher B1+ field in the spinal cord than both 6+2 arrays. Therefore, using a 16-channel configuration is preferable to a 6+2 one. Finally, the SNR of the dipole array was also higher. Since the majority of modern 7T systems have only 8 channels, to drive a 16-channel array, power splitters need to be used. In the next step, we plan to compare the proposed array's Tx performance with the 16Tx64Rx loop array(11).

Three TxRx array designs for combined brain and C-spine MRI at 7 T. The 16-channel array showed improved performance both in Tx and Rx modes compared to 8-channel striplines and loop arrays.
Georgiy SOLOMAKHA (Tübingen, Germany), Markus MAY, Felix GLANG, Oliver KRAFF, Klaus SCHEFFLER, Nikolai AVDIEVICH, Harald QUICK
14:26 - 14:28 #47819 - PG182 Design and evaluation of a 16-channel Tx array for 14 T head imaging using simulations and H-field measurements.
PG182 Design and evaluation of a 16-channel Tx array for 14 T head imaging using simulations and H-field measurements.

In the MR community, increasing B0 field strength has been a key goal due to the expected gains in signal-to-noise ratio (SNR) and contrast-to-noise ratio [1]. The Dutch National 14 Tesla MRI Initiative (DYNAMIC) aims to establish the world’s first 14 T MRI system [2]. In this endeavour, both the main magnet and the remaining MRI components will be developed in parallel. However, RF coil validation will be challenging without a B0 field. Since electronic and surrounding losses are hard to compute, SAR simulations often assume experimental RF power normalization via B1+ mapping. Here, we propose an alternative approach using lossless RF antenna arrays that match the simulated geometry, decoupled cable management, controlled multi-transmit drive, and quantified H-field probes. This work presents the design and evaluation of a 16-channel Tx array for 14 T head imaging using simulations and absolute H-field measurements.

At 596 MHz, potential dielectric losses in construction media will be significant, particularly close to the antenna. Therefore, wire-wound antennas were constructed at least 1cm from the coil frame. S21 measurements were performed at a fixed distance between the antenna and the H-field probe with gradually increased distance between the antenna and the coil former to confirm lossless effects of the former at 1cm distance. A transmit array was constructed by placing sixteen of these spiralled dipoles on a 3D printed spacer Figure 1A). The antennas were placed in two rows of eight (causing two ground planes), staggered with ¼ antenna length overlap. The dipoles were fed at the center using a 50-Ω voltage source. Cables were routed via the ground planes to the radial extent of the coil housing and then routed to the top of the array. Each cable passed a tuned cable trap close to the antenna port, all aligned in the ground plane. No decoupling circuitry was added to the antenna array. FDTD simulations were done in Sim4Life (Zurich MedTech, Switzerland) using the Duke model from the ITIS virtual family [3] (σ = 0.66 S/m, ε = 80) (Figure 1B). A convergence threshold of -50 dB was used. Phase shimming was applied to create constructive interference at the phantom center (Figure 1C). 10g-averaged SAR (SAR10g) maps were computed to assess SAR efficiency. H-field measurements were done by placing a calibrated TBPS01 H-field probe (TekBox Digital Solutions, Vietnam) at the phantom center, which was filled with saline (Figure 2A). Two probe orientations were measured (0° and 90°). A 3 T MRI console (Philips, The Netherlands) generated a Tx signal. Eight up-mixers (Wavetronica, The Netherlands) converted 127.7 MHz to 596 MHz for transmission. The H-field probe output was down-mixed to 127.7 MHz for acquisition with preserved phase coherence (Figure 2C). Due to a current channel limit of 8, each dipole row was excited and validated separately.

Simulations normalized to 16 × 1 W input yielded a B1+ hotspot of 0.84 μT at the phantom center, with a peak SAR10g of 0.28 W/kg and a SAR efficiency of 1.6 μT/√(W/kg). Table 1 summarizes measured signal magnitudes and phases from the pickup probes at both orientations as measured during the transmit pulses. Individual antennas generated 0–1.95 nT. Without phase shimming, the top row (Tx1–Tx8) produced 3.91 and 1.56 nT; the bottom row (Tx9–Tx16) produced 0.78 and 1.30 nT. When phase-shimmed, the top row yielded 8.21 and 6.38 nT, and the bottom row 7.29 and 6.38 nT for the 0° and 90° probe orientations, respectively. The probe signal's resulting phase was zero when shimming was applied. Each antenna element had an input power of 0.69 mW during the measurements. The vector sum of the two orientations for both rows of the array results in a total field of 20.08 nT. Scaling it to 16 x 1W input power, this would yield 0.77 μT, close to the simulated B1+ of 0.84 μT.

The agreement between summed sequential and simultaneously measured H-fields, and the zero phase in the shimmed field, confirms constructive interference at the phantom center and successful implementation of the multi-transmit system. The close match (92%) between measured and simulated B1+ magnitudes confirms low RF losses and successful coil design. Further refinement could correct for antenna mismatch, inter-element coupling, and contributions of B1-. This antenna array was derived from previously optimized designs for 596 MHz [4], promoting uniform excitation and low SAR. The correlation between simulation and experiment supports our method’s viability and paves the way for safe, reliable operation at 14 T.

This work presents the design and evaluation of a 16-channel Tx array for 14 T head imaging using simulations and absolute H-field measurements without the presence of a B0 field. The array's ability to achieve focused B1+ fields through phase shimming that closely matches the RF simulations demonstrates low losses in the antenna setup and a robust multi-transmit bench setup.
Koen VAT, Esmé GALESLOOT, Alexander RAAIJMAKERS, Dennis KLOMP, Mark GOSSELINK (UTRECHT, Netherlands Antilles)
14:28 - 14:30 #47806 - PG183 Computational optimization of 3D-printed flexible MRI receive coils.
PG183 Computational optimization of 3D-printed flexible MRI receive coils.

Magnetic Resonance Imaging (MRI) is a widely used non-invasive technique in both clinical and research settings.[1], [2], [3], [4] Its effectiveness in demanding applications, such as functional MRI in animal models is often limited by low signal-to-noise ratio (SNR). The design of radio frequency receive phased array coils, commonly used to lower SNR, remains largely manual, and is constrained by fabrication complexity and poor anatomical conformity.[5], [6] While custom-built hardware offers potential improvements,[7] traditional methods struggle to accommodate subject-specific constraints that can be mitigated using novel manufacturing techniques such as 3D-printing.[8] To address these challenges, we present a surface-aware, parameterized modeling workflow that digitally optimizes the geometry of a two-channel array coil at 3T (Figure 1). Using Finite Element Method (FEM) simulations, the method iteratively adjusts the inter-coil distance to minimize coupling (S21 parameter) thereby improving the SNR.[5], [9] Applied to a cylindrical phantom, this approach yields measurable SNR improvements between initial and optimized designs (Figure 2). The optimized coils were 3D-printed in flexible resin and validated experimentally on a 3T MRI scanner, showing strong agreement between simulated and measured SNR maps. These results demonstrate a scalable path toward anatomically adaptive, high-performance RF coils for future (pre-)clinical MRI studies.

The studied design is a two-channel surface array coil composed of overlapping 40 mm loops conformally placed on a cylindrical phantom (100 mm length, 48 mm diameter). The coil geometry was parameterized by the ratio of the center-to-center distance between coils to their diameter (θ). A surrogate gradient-descent algorithm integrating MATLAB, Python, and COMSOL Multiphysics was used to minimize S21 and evaluate SNR across θ variations. Simulated SNR and SNR maps (Eq. 1) were computed using B1- (Eq. 2) and a noise correlation matrix derived from electric field distributions (Eq. 3). Coils were fabricated via stereolithography 3D-printing (Form 3BL, Formlabs) using Flexible 80A resin, forming hollow channels later filled with conductive liquid metal (GaInSn alloy). The phantom was printed in Clear V4 resin and filled with a gel composed of water, agar, benzisothiazolinone, and copper(II) sulfate. MRI experiments were conducted on a 3T MAGNETOM Prisma scanner (AS82 CPL gradient coil, 80 mT/m, 200 T/m/s) using a Turbo Spin Echo sequence at 1 mm³ isotropic resolution. Experimental SNR maps were calculated in Python using SciPy and NumPy by convolving a 3×3 kernel to estimate local noise from segmented image regions. SNR = sqrt( B1-^T * R^(-1) * B1-^* ) (1) B1- = (1/2) * (B1x - i * B1y) (2) Rij = σ * ∫V [ Ei^* * Ej ] dv (3)

A state-of-the-art design (θ = 0.75) and an optimized design (θ = 0.66) were successfully printed (Figure 2a). The algorithm converged in 20 iterations. Specifically the system improved from an initial state (θ = 0.75) of S21 = -4.82 dB and SNR = 1.37 x 10-5 to a better performance (θ = 0.66) with S21 = -18.8 dB and SNR = 1.75 x 10-5, showing an increase of 27.7% of the simulated SNR (Figure 2b top row). Measurements at the 3T scanner show a 25.3% improvement of the SNR for the same configuration (Figure 2b bottom row).

A key challenge of this approach for more complex multi-parameter designs (e.g. 16-channels coils, fMRI head coils) is the high computational cost of detailed FEM simulations, especially with realistic loading and fine meshes. The surrogate-based gradient descent method offers an effective compromise, balancing accuracy with computational efficiency to achieve meaningful performance gains.

This study presents a computational framework for optimizing conformal MRI surface coil arrays by minimizing inter-element coupling to enhance SNR. Combining parametric CAD, FEM simulations, and surrogate-based algorithmic optimization, we improved coil performance while ensuring manufacturability. The workflow was validated through 3T MRI and enabled fast, accurate fabrication using 3D printing. This multidisciplinary approach offers a scalable path toward personalized, high-performance hardware.
Quentin GOUDARD (Leuven, Belgium), Hanne VANDUFFEL, Cesar PARA-CABRERA, An VANDUFFEL, Dimitrios SAKELLARIOU, Uwe HIMMELREICH, Wim VANDUFFEL, Rob AMELOOT
14:30 - 14:32 #47642 - PG184 Multiple RF inputs and outputs for the open-source low-cost MaRCoS console.
PG184 Multiple RF inputs and outputs for the open-source low-cost MaRCoS console.

MaRCoS (Magnetic Resonance Control System) [1] is an open-source platform for controlling low-field MRI systems, based on the Red Pitaya SDRLab [2], which provides only two RF transmit/receive channels. This constraint restricts the implementation of essential multichannel techniques such as parallel imaging [3] and active noise cancellation [4,5]. To address this limitation in MaRCoS, we have developed a MIMO (Multiple Input Multiple Output) extension that enables synchronized operation of multiple SDRLab boards, with precise RF phase and amplitude coordination across all channels.

To synchronize the boards, we employ a shared system clocking where a master SDRLab board generates a reference clock distributed to slave SDRLab units. To coordinate the start of sequence execution, the master board also sends a digital trigger signal to the slave boards. To validate the implementation of MIMO, we conducted two experiments. In the first test, we evaluated synchronization across multiple boards by running a script with a simple pulse sequence that generated an RF signal from transmit channels and routed it directly into receive channels. This test was repeated 100 times independently on two different hardware setups using up to three SDRLab boards (Fig. 1). Specifically, we connected the transmit channel of the master board to the receive channel of the first slave; the transmit channel of the first slave to the receive channel of the second slave; and the transmit channel of the second slave to the receive channel of the master board. The second experiment assessed active noise cancellation on a mobile MRI scanner at the M-Tech lab. MIMO was integrated into the MRI4ALL [6] software to control transmission and reception. The setup used twisted-solenoid coils [7] for signal acquisition and five external sensing coils (5 cm, 10 turns) for environmental noise detection. Signals were pre-amplified and filtered (ZFL-500N+, 1–2 dB attenuators, BLP-2.5+ filters) before running a CPMG sequence. Multichannel data were processed using the EDITER algorithm to estimate and subtract environmental interference.

Figure 2 summarizes the synchronization experiments. Figure 2.a shows the real and imaginary components of the signal acquired from the RX0 channels of the master (top panel), first slave (middle panel), and second slave (bottom panel) boards. Figure 2.b shows the amplitude (top panel) and phase (bottom panel) of the signal at the specific time instant highlighted in Fig. 2.a. Figure 3 shows the results of the CPMG experiment used to evaluate active noise cancellation. The top panel displays the echo train acquired using a standard RF receive coil in the presence of environmental noise, showing clear signal degradation and fluctuation across echoes. The bottom panel presents the same dataset after applying EDITER, using the signals from the five additional sensing coils.

Synchronization tests confirmed robust timing alignment, validating the hardware architecture and clock/trigger strategy. While the signal magnitude and phase varied between the boards, calibration can correct these differences. Active noise cancellation improved stability and signal recovery, demonstrating the potential of MIMO for multichannel interference suppression in low-field MRI. EDITER enhanced signal integrity by leveraging environmental noise estimations from the sensing coils. We are now extending the noise cancellation to full image denoising, aiming to improve image quality in environments with high electromagnetic interference. In parallel, we are exploring parallel imaging techniques. Ongoing work includes extending noise cancellation to image-level denoising and investigating parallel imaging methods. To scale up, we are also developing a PCB for distributing the master clock to up to 32 Red Pitayas while preserving signal integrity. This will enable the deployment of high-channel-count receive arrays.

The MIMO extension developed for MaRCoS enables synchronized multichannel reception using multiple SDRLab boards and the active noise cancellation experiments further demonstrated the practical utility of this setup. Existing solutions up to now were either proprietary or significantly more expensive [8].
José Miguel ALGARÍN, Aaron PURCHASE, Vlad NEGNEVITSKY, Luiz Guilherme DE CASTRO SANTOS (Valencia, Spain), Joseba ALONSO
14:32 - 14:34 #47657 - PG185 Scan2Go Project – an Assistive Brain Imaging Device to Enable Fast, Silent and Accessible Brain MRI for Dementia Patients.
PG185 Scan2Go Project – an Assistive Brain Imaging Device to Enable Fast, Silent and Accessible Brain MRI for Dementia Patients.

MRI is highly accessible due to its non-invasiveness. Yet, patient populations such as those with dementia or geriatrics can find MRI procedures difficult. Acoustic noise can cause miscommunication problems, induce panic and claustrophobia and disorientate dementia patients [1-4]. While the MRI patient table is also an obstacle, as climbing onto the table without assistance can be challenging for older age groups. Therefore, the current MRI system is unsustainable for use with such patient groups. The Scan2Go Project aims to facilitate brain MRI to be more accessible for dementia and geriatric patients with a brain imaging device comprised of a movable chair, a silent gradient coil and an open Rx coil. Acoustic noise arises due to rapidly oscillating gradient coils during spatial encoding [5]. Using an ultrasonic gradient coil operating at 20kHz, above the human hearing limit, spatial encoding is effectively silent [6-10]. The patient table is replaced by a chair that can move the subject's head into the isocentre from a seated position, which does not require the subject to exert themselves. The open Rx coil eases the chair's and subject's mobility by providing greater space for the head. This abstract presents the design of the brain imaging device as well as first scans of a phantom with the custom-made ultrasonic gradient coil and Rx coil.

The chair (Figure 1) was designed by INNO Metaal (Eindhoven, the Netherlands) and has a size of 1210x11270x1410mm^3 (WxLxH). The chair's height was chosen based on the 95th percentile of body sizes. An operator moves the chair manually with a tumble switch to a final position set with the console. The chair can also be detached in the case of evacuation. Futura Composites (Heerhugowaard, the Netherlands) designed the gradient and patient tube while the Rx coils were designed by Tesla Dynamic coils. Both coils are housed behind a custom patient tube, which guides the chair (Figure 1a) to the final position and leaves open space so the subject is less constrained (Figure 2). The gradient coil has an inner diameter of 554mm and length of 180mm; the Rx coil has a diameter of 388mm and length of 119mm. The gradient coil can be operated silently with a capacitor bank (Figure 3), making the coil resonant at 20 kHz in series with an NG500 gradient amplifier (Prodive, Eindhoven, the Netherlands). The gradient coil can achieve a maximum gradient strength and slew rate of 40mT/m and 5026 T/m/s, respectively. The device is designed for a 1.5T scanner and tuned to 64MHz. The first images were acquired using a dual-echo multi-slice gradient-echo sequence with: FOV=320x320x219.6 mm3, in-plane voxel-size=4x4 mm2, slice-thickness = 4 mm, slice-gap = 0.4 mm, flip-angle = 12 degrees and TR/TE1/TE=9.3/2.9/6.6 ms. These were used to map the gradient field by supplying a 1 A DC-current to the ultrasonic gradient.

Figure 4 shows the first images acquired with the Scan2Go-setup. Figure 4b shows the measured gradient field and the estimated efficiency (0.04 mT/m/A) of the ultrasonic gradient in the Scan2Go-setup.

In summary, we presented a novel device that could be used seamlessly by a trained operator, allowing positioning of a patient into the scanner bore from a seated position. The design of the chair, including the tumble switch, ensured the operation of the chair matched that of a typical patient table, while safety considerations were also made to enable smooth evacuation as well as access to a nurse call button and headphones for communication with the operator (MCOM, Figure 1a). The imaging experiments in this abstract demonstrated the first imaging with the Scan2Go setup and validated the gradient field of the ultrasonic gradient. The device can also be operated at 20kHz, above the human hearing limit, enabling fast and silent brain imaging.

The Scan2Go Assistive Brain Imaging Device facilitates the positioning of less-abled patients to complete brain imaging protocols and enables fast and silent brain imaging. This device has the potential to make brain MRI more accessible for dementia patients as well as other physically disabled patient groups. The Scan2Go project also aims to evolve into a fully automated setup, which could reduce operational costs and streamline procedures for patients.
Michael MCGRORY (Utrecht, The Netherlands), Thomas ROOS, Edwin VERSTEEG, Mark GOSSELINK, Cezar ALBORAHAL, Thijs VAN HOOREN, Carel VAN LEEUWEN, Hans VAN DEN BERGE, Martin OOME, Wout SCHUTH, Martino BORGO, Jeroen SIERO, Dennis KLOMP
14:34 - 14:36 #46477 - PG186 Comparison of modular flexible and standard MR coils for thoracic outlet syndrome imaging at 3T.
PG186 Comparison of modular flexible and standard MR coils for thoracic outlet syndrome imaging at 3T.

Thoracic outlet syndrome (TOS) is characterized by upper limb pain caused by compression of neurovascular structures, typically in the interscalene space (ISS) and costoclavicular space (CCS). While TOS diagnosis is primarily based on clinical assessment, imaging is essential to localize and assess the severity of compression. Dynamic imaging, while not yet standard practice, has shown potential in a prior study using dynamic CT during functional maneuvers [1]. However, MRI is the preferred method for TOS imaging because of superior soft tissue contrast [2]. The addition of dynamic protocols could further enhance MRI’s diagnostic value but limits coil selection. Available standard coils offer good coverage but suboptimize signal-to-noise ratio (SNR) in potential compression zones due to their rigidity or semi-flexibility. Modular flexible coils, like the ModFlex coil [2], provide superior anatomical conformity and accommodate patient motion more effectively in dynamic MR exams. This study compares the MR imaging performance of the 16-channel ModFlex coil and an 18-channel product coil in healthy volunteers at the two typical regions of neurovascular compression associated with TOS.

9 healthy volunteers (3 females, 6 males; age 30 ± 8 years) participated in one measurement session using two consecutive TOS MRI protocols: one with the 16-channel ModFlex coil [3] and another with the manufacturer’s 18-channel Body 18 coil on a MAGNETOM Prisma 3T (Siemens Healthineers, Erlangen, Germany). ModFlex coil positioning is shown in Fig. 1. Both protocols were conducted under ethical approval of the EDEN study (ClinicalTrials.gov NCT05218460, CPP SUD-EST IV, 26.07.21), with volunteers positioned supine with arms overhead within the opening of the MRI tunnel. Each protocol included anatomical 2D T1w TSE sagittal sequences (0.48×0.48×3 mm³, FOV 142×160 mm²). 3D GRE (2.2 mm³) and noise-only scans were acquired for multi-channel SNR calculation using the pseudo-replica method [4]. Two bilateral regions of interest were manually approximated on SNR maps using 3D Slicer [5], based on identifiable anatomical structures: the ISS, following the estimated brachial plexus path between the anterior/middle scalene muscles and first rib; and the CCS, between the clavicle and first rib. SNR values were extracted for each region and averaged within each ROI and across both sides. The resulting values were compared across coils using a Wilcoxon signed-rank test, with significance set at p<0.05.

The SNR comparison results are shown in Fig. 2. In the CCS, the ModFlex coil demonstrated significantly higher SNR (p = 0.004). In the ISS, SNR was higher on average with ModFlex, but the difference was not statistically significant (p = 0.098). Typical SNR maps of one volunteer acquisition are shown in Fig. 3, and representative anatomical images acquired with each coil are presented in Fig. 4. Anatomical details are clearly visible in ModFlex MRI whereas Body 18 coil images show noise influence in the region of interest.

The higher SNR observed in the CCS likely results from the closer positioning of the coil to the region of interest. Variability in SNR measurements within the ISS may be influenced by anatomical differences among subjects and small variations in coil positioning; nevertheless, a trend toward improved SNR with the ModFlex coil was observed. A systematic study on the coil positioning could further improve its performance. Future work will include studies with larger cohorts and standardized protocols to validate these results.

Using a modular flexible coil array at 3T MRI enables efficient assessment of thoracic outlet syndrome, with significant SNR improvements in the costoclavicular space and a trend of improved SNR in the interscalene space.
Catherine TRUONG (Nancy), Bouchra ASSABAH, Pedro TEIXEIRA, Audrey KIRSCH, Pierre-André VUISSOZ, Jacques FELBLINGER, Elmar LAISTLER, Lena NOHAVA, Karyna ISAIEVA
Salle 120

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E24
14:00 - 15:30

ECRC
Spin Together: Aligning People and Practices in Research using Lab Handbooks

Keynote Speakers: Beatrice LENA (Ph.D.) (Keynote Speaker, Leiden, The Netherlands), José MARQUES (PhD), Myrte STRIK (Postdoctoral Researcher) (Keynote Speaker, Amsterdam, The Netherlands), Benjamin TENDLER (Keynote Speaker, Oxford, United Kingdom)
14:00 - 15:30 Introduction to lab handbook. Benjamin TENDLER (Keynote Speaker, Oxford, United Kingdom)
14:00 - 15:30 Panelist round : Insights into need for or experiences with lab handbooks from other labs. José MARQUES (PhD), Myrte STRIK (Postdoctoral Researcher) (Keynote Speaker, Amsterdam, The Netherlands), Beatrice LENA (Ph.D.) (Keynote Speaker, Leiden, The Netherlands)
14:00 - 15:30 Lab handbook exercise. Benjamin TENDLER (Keynote Speaker, Oxford, United Kingdom), José MARQUES (PhD), Myrte STRIK (Postdoctoral Researcher) (Keynote Speaker, Amsterdam, The Netherlands), Beatrice LENA (Ph.D.) (Keynote Speaker, Leiden, The Netherlands)
14:00 - 15:30 Panel discussion about challenges the panelists have faced or with prompts from the audience/organizer. Benjamin TENDLER (Keynote Speaker, Oxford, United Kingdom), José MARQUES (PhD), Myrte STRIK (Postdoctoral Researcher) (Keynote Speaker, Amsterdam, The Netherlands), Beatrice LENA (Ph.D.) (Keynote Speaker, Leiden, The Netherlands)
Salle 76

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G24
14:00 - 15:30

Poster 4
FT3 - Best evidence and best practice | FT2 - Cardiac and Vascular | FT2 - Tumours

14:00 - 15:30 #47795 - PG364 Infection Prevention and Control in Magnetic Resonance Imaging: Investigating Radiographer Knowledge, Attitudes, and Practices in Contrast Administration.
PG364 Infection Prevention and Control in Magnetic Resonance Imaging: Investigating Radiographer Knowledge, Attitudes, and Practices in Contrast Administration.

Magnetic Resonance Imaging (MRI) presents a unique infection prevention and control (IPC) challenge due to its unique environment, complex workflows and distinct requirements for MRI-safe equipment [1]. Despite the clinical importance of IPC [2], specific guidance tailored to MRI remains limited. This study investigates the knowledge, attitudes, and practices (KAP) of MRI radiographers related to IPC for intravenous (IV) contrast administration, including the influence of training, workplace policies, and perceived infection risks.

An online cross-sectional survey targeting MRI radiographers in Australia was launched in October 2024. The survey gathered demographic information and evaluated KAP domains using Likert-scale and multiple-choice items. Additional questions focused on the challenges of IPC adherence, the availability of contrast-related IPC policies, the time since the last formal IPC training, and primary sources of IPC knowledge. Survey responses were collated and analysed using Microsoft Excel.

A total of 50 registered MRI radiographers completed the survey, 80% of whom were senior radiographers or MRI section leaders, and 76% had more than 10 years of experience in MRI. Study participants had high overall knowledge scores (93%) and positive attitudes (87%) toward IPC. However, only 66% always applied standard precautions when interacting with patients, with the remainder either frequently or occasionally applying standard precautions. Applying standard precautions was lower (52%) when utilising MRI equipment. Half (58%) of the participants had completed IPC training in the past year, while 46% and 14% either did not have or were unsure if they had an IPC team and IPC policies, respectively. Overall, in most of the participants’ workplaces, radiographers are responsible for setting the contrast injector, connecting the intravenous contrast to the patient, and cleaning the injector. However, only 26% of participants would clean the MRI equipment between patients, with 32% cleaning the room once a day. While institutional guidelines were commonly cited as the primary source of information, peer discussions were the most frequently reported source of knowledge regarding contrast injectors. Participants consistently identified MRI injectors, contrast tubing, and accessories as high-touch, high-risk equipment, with 70% believing their workplace recognised them as such. However, only 25% of participants would clean IV contrast-related equipment more than once per day. IPC adherence was reported to decline during high patient volumes, with respondents citing limited time to maintain aseptic technique during IV cannulation and contrast administration.

These findings indicate that MRI radiographers have a strong foundational knowledge and a proactive attitude toward IPC during contrast procedures. However, inconsistent workplace recognition of high-risk surfaces and reliance on informal learning may undermine their practice. Time pressure and the challenge of maintaining aseptic technique during IV cannulation, particularly in busy or emergency settings, further affect the consistency of IPC.

This study highlights a gap in MRI-specific IPC guidance, particularly regarding contrast administration. While radiographers demonstrate strong foundational knowledge and commitment to IPC, the lack of consistent, evidence-based protocols and modality-specific procedures undermines practice. Addressing these limitations requires a multifaceted approach, integrating formal training, MRI-appropriate IPC frameworks, and institutional support to promote consistent, safe, high-quality care. Radiographers are well-positioned to lead and inform these developments, and their active involvement in future research and policy design will be crucial to advancing IPC standards in MRI environments.
Frances GRAY (Sydney, Australia), Dania ABU AWAAD, Yobelli JIMENEZ, Suzanne HILL, Sarah LEWIS, Peter KENCH
14:00 - 15:30 #45630 - PG365 Student Perceptions of MRI Simulation in their Undergraduate Radiography Education.
PG365 Student Perceptions of MRI Simulation in their Undergraduate Radiography Education.

Simulation-based education enhances practical competencies ahead of clinical placements. In radiography, MRI simulation provides a safe, interactive environment for students to develop technical and decision-making skills. The addition of a scanning simulation tool was added in response to updated HCPC standards, which now require qualifying radiographers not just to assist but be fully capable of conducting an MRI examination. The aim of this study is to evaluate the initial experiences, perceptions, and acceptance of student radiographers in utilising an MRI simulator for their educational development.

A focus group with six final-year radiography students was conducted. Participants were self-selected volunteers who had completed an MRI simulation module. Discussions were transcribed and thematically analysed.

Six overarching themes emerged: Curriculum structure, Technical Challenges, Guidance and Support, Confidence and Skill -Building, Learning process, clinical practice. Some noted improved engagement in clinical discussions and job interviews. However, technical and instructional gaps were identified, with students requesting deeper explanations of MRI parameters. Students also suggested earlier and more frequent integration to better align with theoretical learning and clinical placements.

Students valued MRI simulation for developing competency and confidence but highlighted the need for earlier integration, improved usability, and stronger alignment with clinical practice.

Findings support structured MRI simulation implementation to optimise learning outcomes. Future research should explore the long-term impact on competency retention and employer perceptions of simulation-trained graduates.
Ioele ELISABETH, Darren HUDSON (Exeter, United Kingdom)
14:00 - 15:30 #47493 - PG366 Assessment of 2D and 3D Cartilage Thickness Measurements in a Positioning Test–Retest Scenario.
PG366 Assessment of 2D and 3D Cartilage Thickness Measurements in a Positioning Test–Retest Scenario.

The cartilage thickness measurement from MRI images has become a vital part of clinical trials and longitudinal OA studies. With the availability of automatic segmentation tools, the assessment of cartilage has become quicker and more accessible [1]. However, thickness measurement is still challenging, as the cartilage tissue spans only 2–10 voxels in-plane, and the inclusion or exclusion of voxels at the boundary can significantly affect the results [2]. Additionally, the measured thickness can vary with slice positioning, making 3D thickness measurement a potentially better option to the 2D approach. While consistent patient positioning during follow-up visits improves overall precision, it may not always be possible due to factors such as pain. The objective of this experiment was to assess the repeatability of thickness measurements when the knee is rotated and to compare the 2D and 3D approaches.

The left knees of eight healthy volunteers (4 men, 4 women, mean age: 35.5 ± 10.2 years) were scanned on 3T Siemens PrismaFit (Siemens Healthineers AG, Forchheim, Germany). The 3D DESS (TE=5ms, TR=14.1ms, 160 slices, 0.6x0.6x0.6mm3, flip angle=25°, acquisition=5:58min) was used. Each volunteer's patella center was marked with a black line, and two additional lines spaced 1cm apart were drawn on each side (Figure 1). A dedicated 15-channel knee coil was positioned to align these lines with the scanner laser, producing five distinct knee positions: neutral, two medial rotations, and two lateral rotations. Knee Position Angles were measured using RadiAnt DICOM Viewer (Medixant, Poznań, Poland) (Figure 2). Images were automatically segmented using MR ChondralHealth version 3.1 (Siemens Healthineers AG, Forchheim, Germany), with manual corrections applied when necessary. Nine femoral cartilage regions were assessed: medial (anterior/central/posterior), trochlear (lateral/central/medial), and lateral (anterior/central/posterior). Cartilage thickness was computed using a custom Python script. Cartilage voxels adjacent to the bone (proximal surface) were identified, and the real-world coordinates of voxel vertices shared between bone and cartilage at the bone-cartilage interface were calculated using the affine matrix. The distal surface voxel vertices were identified as vertices shared with the background (value 0) neighboring voxels. For each voxel along the distal surface, the nearest voxel along the proximal surface was found using a KDTree nearest-neighbor search (SciPy library [3]). Cartilage thickness was calculated as the mean of Euclidean distances between each distal surface voxel and its corresponding nearest neighbor on the proximal surface. This was performed either in 3D, or as 2D for each individual slice. The average thickness for each cartilage segment in 2D scenario was then obtained by averaging the thickness values across all slices within that segment. Slices with large discrepancies between the number of proximal and distal surface vertices, may result in overestimated cartilage thickness, therefore measurements exceeding 3 mm were excluded. Finally, correlations between knee rotation angles and thickness were evaluated using Repeated Measures Correlation calculated with R library rmcorr [4].

Results are summarised in Table 1 and Table 2.

Given the small number of probands and the large number of comparisons, the summary statistics presented in Table 1 should be interpreted as exploratory and primarily for orientation. The relationship between rotation angle and cartilage thickness varies across femoral regions and differs between 3D and 2D measurements. Notably, the trochlea medial segment shows a strong negative correlation in 3D, which is not observed in 2D. This suggests that precise and consistent positioning is essential when using 3D thickness measurements, particularly in longitudinal follow-up studies. Overall, cartilage thickness appears to be influenced by knee rotation in most femoral regions, with the exception of the medial posterior femur, where no correlation was observed.

This study demonstrates that femoral cartilage thickness is influenced by knee rotation, with region-specific patterns of correlation. The findings underscore the importance of consistent joint positioning in imaging protocols, especially for longitudinal assessments. Notably, the absence of correlation in the medial posterior region suggests localized variations in how rotation impacts cartilage morphology.
Veronika JANACOVA (Vienna, Austria), Pavol SZOMOLANYI, Diana SITARCIKOVA, Vladimir JURAS
14:00 - 15:30 #45479 - PG367 The diagnostic utility of neuromelanin-sensitive MRI in Parkinson’s disease: a systematic review.
PG367 The diagnostic utility of neuromelanin-sensitive MRI in Parkinson’s disease: a systematic review.

Parkinson’s disease (PD) diagnosis primarily depends on clinical criteria, but the need for objective biomarkers remains critical due to limitations in early and accurate detection. Neuromelanin-sensitive magnetic resonance imaging (NM-MRI) has emerged as a non-invasive imaging modality capable of visualising neuromelanin depletion within the substantia nigra pars compacta (SNpc), a hallmark of PD pathology. While initial studies suggest NM-MRI holds promise for enhancing diagnostic accuracy, considerable methodological variability presents a challenge to its integration into clinical practice. This systematic review focuses on evaluating NM-MRI’s diagnostic potential, examining technical variability, and considering its future role in PD diagnosis.

We systematically reviewed 29 diagnostic accuracy studies encompassing 1,207 patients with PD and 990 controls. Studies predominantly utilised 3T MRI scanners with T1-weighted fast spin-echo sequences, though considerable variation existed in protocols, image analysis techniques (manual, semi-automated, automated), and target anatomical regions within the SNpc. Diagnostic metrics- sensitivity, specificity, and area under the curve (AUC)- were extracted and rigorously analysed to determine NM-MRI's diagnostic performance.

NM-MRI consistently exhibited high diagnostic sensitivity across studies, with values ranging from 60% to 100%; notably, approximately one-third of studies reported sensitivities above 90%. Specificity varied more significantly, from 66.7% to 100%, with over 85% of studies reporting specificity exceeding 80%. Robust AUC values (0.80–0.99) were frequently reported, particularly when employing volumetric analyses of SNpc. Despite these strong diagnostic metrics in identifying PD vs healthy controls and even atypical parkinsonian syndromes (APS), significant methodological heterogeneity—including variations in MRI acquisition parameters, segmentation techniques, and clinical populations studied—contributed to observed inconsistencies in performance.

This systematic review evaluates NM-MRI's diagnostic utility for Parkinson’s Disease, highlighting strengths such as a high number of comparative studies and consistent use of validated diagnostic frameworks. However, methodological limitations like variability in imaging protocols and small-scale studies affect generalizability. Clinical implementation faces challenges due to the lack of standardized protocols; adopting T1-weighted fast spin-echo sequences and 3T MRI platforms is recommended. The SNpc region, especially its lateral part, is key for diagnosis, and combining analyses with the LC enhances accuracy. Workflow integration requires balancing scan duration and analysis methods, with automated tools showing promise. Standardization across technical parameters and analysis methods is critical for consistency. Although resource-intensive, NM-MRI could offer long-term cost savings through improved diagnostic accuracy. Future research should focus on achieving international protocol consensus, conducting large-scale validation studies, and integrating NM-MRI with AI and multimodal diagnostics for comprehensive PD management.

NM-MRI demonstrates robust potential as a sensitive and reliable biomarker for PD diagnosis and differential diagnosis. Addressing methodological variability through protocol standardisation and rigorous multicenter validation is essential to optimise its diagnostic accuracy, reproducibility, and integration into routine clinical practice.
Rayo AKANDE (Basel, Switzerland)
14:00 - 15:30 #47901 - PG368 Localising unilateral lumbosacral radicular pain through Diffusion Tensor Imaging: an experimental study.
PG368 Localising unilateral lumbosacral radicular pain through Diffusion Tensor Imaging: an experimental study.

Unilateral lumbosacral radicular pain is common, but accurately diagnosing it remains difficult [1]. Conventional macroscopic anatomical MRI (T1- and T2-weighted sagittal and axial sequences) produce a notable number of false positives or false negatives, resulting in discrepancies between MRI findings and patient symptoms [2-7]. In contrast, microstructural MRI, such as Diffusion Tensor Imaging (DTI), can reveal pathological changes in the form of reduced fractional anisotropy (FA) in the affected lumbosacral nerve, even in the absence of overt nerve compression [6-12]. However, there is no consensus yet on the optimal DTI protocol for reliably identifying symptomatic nerve roots [13]. In this experimental study, we aim to identify the most reliable DTI acquisition strategy for the robust visualization and segmentation of the lumbosacral nerve roots (LNR) (L3–S1), with the ultimate goal of enabling quantification of the extent of unilateral damage associated with radicular pain. We scanned healthy controls using multiple spinal cord DTI protocols and evaluated how well each protocol preserved anatomical normality. Additionally, we examined the effect of two distinct DTI processing pipelines to assess the relative impact of pipeline’s strategies on tractography results.

Seven healthy volunteers were scanned on a 3T Siemens Prisma system at the GIGA In Vivo Imaging platform, GIGA Institute, University of Liège, Belgium. Three different DTI protocols were considered (Table 1). ZOOMit showed higher anatomical detail but longer scan time (~35 min), while Coronal was fastest (~7 min). Due to time constraints, only two protocols were applied per subject, with each tested in four volunteers (Table 2). Two different DTI pipelines were examined to evaluate the impact of preprocessing on tractography: “SCT” and “our”. The former uses the MOCO algorithm [17], while the latter consists of denoising [19], correction for Gibbs ringing artifacts [20], correction of distortions due to susceptibility, head motion, and eddy currents [21]. “None” refers to a baseline case with no preprocessing. Tractography was performed using MRtrix3's tckgen algorithm [22]. We estimated FA using DTIFIT in FSL with weighted linear least squares [23]. The FA symmetry score was computed by multiplying the FA map and tract density map voxel-wise, then summing the weighted values separately for the left and right sides of the spinal cord (Figure 1).

Figure 1 shows left–right FA symmetry for the L3 to S1 nerve roots. Results are grouped by DTI protocol (Standard axial, ZOOMit axial, Coronal) and preprocessing pipeline (none, SCT, our). Substantial differences are observed across both protocols and pipelines. The combination of ZOOMit and our pipeline provided on average the highest FA symmetries for L3, L4, and L5. However, the Coronal DTI protocol combined with the our pipeline provided the highest FA symmetries for S1. Figure 2 shows representative tractography results of the lumbosacral nerve roots using the three examined DTI protocols. Notable differences in streamline density and anatomical coherence are observed across protocols, with ZOOMit axial DTI yielding the highest coverage but also more spurious tracts.

This study shows that the choice of DTI acquisition protocol has a substantial impact on tractography outcomes and left–right FA symmetry. The visibility and reconstruction quality of specific lumbosacral nerves varied across protocols: the ZOOMit axial DTI provided the most consistent and detailed tractography for the L3 nerve, while both the ZOOMit and Standard axial protocols performed comparably well for L4 and L5. In contrast, the S1 nerve was reconstructed with similar reliability across all three protocols. Notably, the ZOOMit protocol exhibited increased sensitivity to spurious streamlines, emphasizing the need for careful parameter tuning to minimize false positives. Between the two preprocessing pipelines evaluated, our in-house method yielded slightly better performance than the SCT pipeline. While this experimental analysis was conducted on a limited number of subjects, it offers preliminary results toward the optimization of DTI-based imaging of the lumbosacral nerve roots. Future studies involving larger cohorts are warranted to validate these findings and to further refine protocol selection for clinical and research applications.

In conclusion, our findings highlight that the choice of DTI acquisition protocol has a more significant impact on tractography and FA symmetry of the lumbosacral nerve roots than the choice of processing pipeline. ZOOMit provided the best anatomical detail for L3–L5, while all protocols performed similarly for S1. Careful tuning of tractography parameters and thoughtful pipeline selection remain essential.
Evgenios KORNAROPOULOS (Liège, Belgium), Pierre PESESSE, Mark VANDERTHOMMEN, Christophe DEMOULIN, Laurent LAMALLE, Christophe PHILLIPS, Mikhail ZUBKOV
14:00 - 15:30 #46765 - PG369 From Magnetic Gradients to Sound Waves: A Five-Year Journey of the ESMRMB Podcast.
PG369 From Magnetic Gradients to Sound Waves: A Five-Year Journey of the ESMRMB Podcast.

Effective science communication is increasingly recognized as a critical component of responsible research practice, fostering transparency, enhancing public trust, and supporting reproducibility and collaboration across disciplines. Prior studies have shown that open access dissemination and targeted communication strategies can improve research rigor, democratize knowledge, and accelerate cross-border collaboration. In this spirit, the ESMRMB Early Career Researchers Committee launched the ESMRMB Podcast in 2020 to create an accessible and sustainable platform for the scientific community. This ongoing endeavor is entirely developed, hosted, and managed by early career researchers, with the overarching goals of enhancing knowledge exchange, fostering collaboration, and advocating for effective science communication. Additionally, the podcast aims to promote diversity in skillsets, academic backgrounds, career paths, and perspectives within the MR field. Here, we present a descriptive analysis of listener engagement, demographics, and global reach of the ESMRMB Podcast over a five-year period, highlighting the impact and value of this podcast for community-driven science communication.

A total of 16 episodes were recorded between October 2020 and April 2025 via Zoom with invited speakers, and edited using Apple iMovie. A total of 16 episodes were released, featuring content across a broad range of MR-relevant themes including MR technologies, clinical applications, career development, networking, grant writing, science communication, open access, international collaboration, and diversity, equity, and inclusion. The podcasts were distributed through major platforms such as Apple Podcasts and Spotify. Listener analytics were collected and evaluated over five years, including engagement trends, demographics, geographic distribution, device and platform usage.

Listenership remained consistent, with peaks typically aligning with new episode releases (Figure 1). The majority of listeners were aged 23–44 (87.3%) and identified as male (62.7%), reflecting strong engagement from early-career professionals and researchers (Figure 2). The podcast reached a global audience, with top listener countries including the United States (23.6%), United Kingdom (15.1%), Germany (14%), the Netherlands (8.3%), and Japan (7.9%) (Figure 3). Multi-platform access (Figure 4) and mobile-first consumption (57.6% via iPhone or Android devices) emphasized the importance of cross-platform accessibility in science communication.

Our podcast series demonstrated consistently high listener engagement, providing an open and accessible platform for scientific exchange across the global MR community. The high engagement among young listeners—particularly in countries like the US, UK, Germany, the Netherlands, and Japan—may reflect both a generational shift in media consumption for knowledge and skills improvement and the presence of well-established MR research centers that foster curiosity and ongoing learning. Moving forward, we envision enhancing our recording quality using professional audio equipment, exploring multilingual episode formats, and integrating podcast interviews with conference abstracts and featured presenters to further amplify scientific dialogs.

Our podcast demonstrates the potential of audio-based communication to enrich education, inclusion, and collaboration in the field of MR.
Moss ZHAO (Stanford, USA), Daniel HOINKISS, Melanie BAUER, Hendrik MATTERN, Sanam ASSILI, Patricia CLEMENT, Joana PINTO
14:00 - 15:30 #45756 - PG370 Systematic Review of the role of Machine Learning in neuroimaging of pediatric brain tumors.
PG370 Systematic Review of the role of Machine Learning in neuroimaging of pediatric brain tumors.

Artificial Intelligence, which can be used to solve tasks. Recently, there has been an exponential growth in publications using ML in medicine, but the quality of the articles is heterogenous. Thus, several quality scoring tools have been created over the years to assess quality of these articles using ML. The METhodological RadiomICs Score (METRICS) is one of them and it is the latest quality scoring tool to have been made available. Aim of this research is to perform a systematic review of the studies using radiomics and ML in neuroimaging of PPBT and to evaluate their methodological quality with the METRICS score.

Four radiologists performed systematic research of the scientific literature on Pubmed, Scopus and Web of Science including articles up to October 2024. Methological quality was assessed with the METRICS score [1].

In total, 361 articles were found, but only 51 of them were eligible considering the inclusion criteria, which were : population aged less than 19 years of age, original research articles, and use of radiomics, ML and/or Artificial Intelligence in neuroimaging of PPBT (fig. 1). The biggest part of the included articles was multicentric (41%) and used manual segmentation (58.8%). The METRICS score was moderate in 47% of cases with the highest score being 77 and 29.4 the lowest (fig. 2).

Our study has some limitations. Firstly, the studies included are retrospective. Secondly, MRI protocols are heterogeneous. Plus, some articles did not use the WHO 2016 classification to classify PPBT [2]. Finally, the METRICS score is relatedly new thus requires further validation.

ML has shown multiple promising applications in neuroimaging of PBT [3]. Although the overall quality of the articles in this field is moderate, it needs to be implemented to use these tools in clinical practice.
Teresa PERILLO (Naples, Italy), Claudia GIORGIO, Mattia SICA, Andrea PONSIGLIONE, Arnaldo STANZIONE, Lorenzo UGGA, Gaetano UNGARO, Salvatore LAVALLE, Carmine FRASCA, Renato CUOCOLO
14:00 - 15:30 #45628 - PG371 Impact of Radiofrequency (RF) Coil Design on the Diagnostic Performance of Sodium (²³Na) MRI for Tissue Characterisation: Clinical Research Evidence.
PG371 Impact of Radiofrequency (RF) Coil Design on the Diagnostic Performance of Sodium (²³Na) MRI for Tissue Characterisation: Clinical Research Evidence.

Sodium (23Na) MRI at ultra-high field (UHF) (B0 ≥7 T) enables non-invasive mapping of tissue sodium concentration (TSC), providing insights into cellular viability and ion homeostasis, with elevated sodium levels commonly observed in malignant tumours compared to normal or benign tissues [1][2][3]. However, various technical challenges remain—including low signal-to-noise ratio (SNR), rapid biexponential T₂ decay, and strong partial volume effects (PVEs)—hinder its clinical translation [4][5]. A variety of RF coil designs are available, such as surface coils, birdcage volume coils, single/dual-tuned coils, and phased array receive coils, with each offering different trade-offs in SNR and spatial resolution. This systematic review evaluates how different RF coil designs affect the diagnostic performance of quantitative ²³Na MRI based on clinical evidence.

A systematic review following PRISMA 2020 guidelines was conducted (Figure 1) [6]. PubMed was searched (2004–2024) using a structured string combining medical subject headings (MeSH) terms and keywords related to 23Na MRI and pathology. Studies were included if they quantitatively assessed TSC in clinical populations, reported means and standard deviations, and involved at least five participants per group. Extracted data included organ system, field strength, RF coil type, and TSC measurements. TSC contrast reflects the absolute difference in TSC between malignant and beningtissues, while effect size (d) is the standardised magnitude of the difference between separation of of malignant and bening tissue using TSC. Bar charts visualised performance differences across coil designs, grouped into surface coils, birdcage coil, knee-coil, clamshell coil, and more with respect to effect size (d) (Figure 3).

Fifteen studies were included, covering breast, kidney, prostate, and cardiac tissues, at various field strength (Figure 2). TSC contrasts ranged from 0.5 mM to 66.3 mM, with effect sizes ranged from 0.25 to 3.64. Clear separation (d > 0.8) was achieved in 9 studies, while others exhibited overlap between normal and pathological tissues (Table 1). For instance, Zaric et al. [7] demonstrated clear separation in breast cancer using a surface coil (d = 3.30), whereas Horvat-Menih et al. [8] and Barrett et al. [9] reported moderate separability in renal (d = 1.47) and prostate (d =1.09) imaging, respectively. Studies using multi-channel phased arrays for signal reception showed good performance with enhanced TSC contrast. Single-tuned sodium coils generally provided better performance than dual-tuned coils, while volume coils, such as birdcage, offered good B₁ homogeneity but lower sensitivity.

RF coil design was a dominant factor influencing the diagnostic accuracy of ²³Na MRI. The use of multi-channel phased arrays and/or single-tuned coils enhanced SNR and this leads to increased spatial resolution and improved tissue characterisation. Volume coils and dual-tuned coils exhibited lower sensitivity, which reduced the effectiveness of TSC-based tissue differentiation. Additional factors affecting coil performance included PVEs, tissue heterogeneity, and sequence optimisation [10]. These factors could be improved the use of independent proton coils for tissue localisation and B0 shim corrections. For sodium imaging, the use of volume transmit coils, which are particularly effective in achieving B₁⁺ homogeneity in large anatomical regions such as the torso combined with phased array receive coils to enhance sensitivity, will be essential for realising the diagnostic potential of ²³Na MRI in oncology, nephrology, and cardiology.

This review highlights that multi-channel phased surface arrays and the use single-tuned rather than double-tuned sodium coils significantly improve diagnostic performance in ²³Na MRI. Future RF coil developments could emphasis higher channel densities, flexible conformal surface arrays, advanced decoupling, and potential integration of volume Tx coil with phase Rx array in sodium combined with proton coil arrays, will further enhance clinical translation, supporting early disease detection and more personalised treatment strategies.
Un Hou CHAN (London, United Kingdom), Antoine NAEGEL, Sarah MCELROY, Vicky GOH, Özlem IPEK
14:00 - 15:30 #47313 - PG372 Quantitative MRI Techniques for Detecting Type 2 Diabetes-Related Brain Changes: A Systematic Review.
PG372 Quantitative MRI Techniques for Detecting Type 2 Diabetes-Related Brain Changes: A Systematic Review.

Type 2 Diabetes Mellitus (T2DM) is a prevalent and chronic metabolic disorder marked by high blood glucose level and insulin resistance. T2DM patients may experience cognitive impairments in areas such as executive function, memory, attention and visuospatial skills. Such cognitive changes are hypothesized to result from altered cerebral blood flow (CBF) and increased iron deposition in the brain. As such, advanced quantitative MRI techniques have emerged as essential tools to investigate the underlying neural mechanisms and potential biomarkers of cerebral dysfunction. This review focuses on studies involving the evaluation of the sensitivity and specificity of selected quantitative MRI techniques namely Arterial Spin Labelling (ASL), Quantitative Susceptibility Mapping (QSM), and T1/T2 relaxometry in detecting diabetes-related cerebral alterations.

Using PubMed, a systematic search was carried out to identify human studies in the English language involving investigations of the impact of T2DM on the brain through advanced quantitative MRI techniques. The search query used was: ("Diabetes Mellitus, Type 2"[MeSH] OR "Type 2 Diabetes Mellitus" OR "T2DM" OR "Type 2 Diabetes") AND ("Brain"[MeSH] OR "Cerebral" OR "Neuroimaging" OR "White Matter") AND ("Multiparametric Neuroimaging" OR "Quantitative MRI" OR "Quantitative Susceptibility Mapping" OR "QSM" OR "T1 mapping" OR "T2 mapping" OR "Arterial Spin Labelling" OR "ASL" OR "T1 relaxometry" OR "T2 relaxometry" OR "Relaxation time measurement") The earliest published paper from the search was from 2017. As a result, no strict date range was applied to the search period. Relevant earlier works cited in the included papers were also considered. The inclusion criteria required that studies: primarily investigate T2DM; include at least 10 participants per group; and utilize quantitative MRI methods. Reviews were excluded. The search resulted in14 research articles, which were subsequently analyzed using the PICO framework.

ASL-based perfusion imaging was the most frequently used MRI technique. However, studies assessing whole-brain CBF using solely ASL produced inconsistent results across different studies. To address this issue, ASL was often combined with fMRI, leading to more consistent insights particularly when calculating metrics such as the regional homogeneity (ReHo) to CBF ratio. Findings from these studies indicated region specific hypoperfusion in T2DM patients, notably in areas associated with memory and executive function, such as the hippocampus, precuneus, and posterior cingulate cortex. QSM was used in three studies to quantify brain iron deposition. Increased susceptibility values were observed in regions like the putamen, substantia nigra and Parahippocampal gyrus in T2DM patients. This was significantly visible on those with mild cognitive impairment. One multimodal study combined structural MRI, diffusion tensor imaging (DTI), ASL, resting-state fMRI, FDG-PET, and retinal OCT to assess the effect of T2DM on brain structure and function. The study found reduced attentional performance, lower nucleus acumens volume, and decreased cerebral glucose metabolism in individuals with T2DM, despite no significant differences in cerebral perfusion or white matter microstructure. Notably, no studies were found utilizing T1 and T2 relaxometry.

While CBF results derived from ASL alone were inconsistent, several studies emphasized the importance of multimodal MRI approaches in retrieving early signs of neural compromise in T2DM. Neurovascular Coupling (NVC) measures, derived from combining ASL with fMRI, showed stronger associations with cognitive performance and disease duration, offering a more detailed picture of how T2DM alters brain function. Notably, the integration of ASL with fMRI introduces non-quantitative measures, such as ReHo; nevertheless, this combination remains valuable for uncovering patterns of disrupted NVC. Studies also highlighted that voxel-based and region-specific analyses provided greater sensitivity than global measurements, uncovering localized abnormalities that whole-brain approaches might miss. QSM studies introduced iron deposition as an important mechanism of cognitive dysfunction, aligning with known pathways of oxidative stress and inflammation in T2DM. The relationship between elevated iron levels and impaired cognition, particularly executive dysfunction and memory loss, supports the use of QSM in monitoring disease progression and therapeutic response.

Quantitative MRI techniques especially ASL, fMRI, and QSM demonstrate significant promise in detecting cerebral alterations in T2DM patients. Multimodal imaging approaches and advanced analytical techniques such as voxel-wise and region-specific assessments enhance diagnostic sensitivity, potentially allowing earlier detection. Altered perfusion, iron deposition, and cognitive decline highlight neuroimaging biomarkers’ role in T2DM related brain dysfunction.
Nolan VELLA (Malta, Malta), Claude Julien BAJADA, Matthew GRECH SOLLARS, Carmel J CARUANA
14:00 - 15:30 #47796 - PG373 Infection Prevention and Control in Magnetic Resonance Imaging: A Scoping Review of Current Evidence and Practice.
PG373 Infection Prevention and Control in Magnetic Resonance Imaging: A Scoping Review of Current Evidence and Practice.

Magnetic Resonance Imaging (MRI) is a critical diagnostic modality that presents unique challenges for infection prevention and control (IPC) due to its strong magnetic field, non-ferromagnetic equipment requirements, and access-controlled environment [1]. A recent scoping review of IPC in medical imaging departments indicated that IPC education would benefit from a systems approach and further research [2].. The necessity of IPC within healthcare settings is universally acknowledged as critical to providing safe and high-quality care [3]. This scoping review aims to map the existing literature and identify the gaps in research concerning IPC practices within MRI. By examining the range and nature of studies, including guidelines, empirical research, and expert opinions, this review will provide a comprehensive overview of the current knowledge on the specialised IPC measures required in MRI suites. It will highlight the challenges and limitations of current practices around the world, outline the specific needs and considerations for effective IPC in MRI settings, and suggest areas for future research and policy development.

A scoping review methodology was employed in accordance with the Joanna Briggs Institute framework [4]. A comprehensive literature search was carried out utilising several electronic databases, including Medline, Scopus, CINAHL, Web of Science, and Google Scholar, to pinpoint relevant peer-reviewed articles. The search concentrated on topics pertaining to IPC within MRI settings. Searches were restricted to articles published in English from 2000 to 2024, with a focus on healthcare environments that utilise MRI and associated clinical workflows. Covidence was employed for data management and screening [5], while the SPIE [4] framework facilitated structured evidence synthesis. The PRISMA checklist was utilised to ensure transparent and efficient reporting [6]. Ultimately, a total of 1551 articles were identified; of these, 49 progressed to full-text review, and through further screening, 27 studies were included in the review.

The review encompassed 27 studies, predominantly concentrating on guidelines and recommendations for infection prevention and control (IPC) in medical imaging departments. A notable surge in published articles was observed in 2020. Of the 27 articles evaluated, 17 pertained to COVID-19 IPC, with only 4% specifically addressing MRI, primarily focusing on imaging-related services during the COVID-19 pandemic. Additionally, six articles were associated with investigative studies; one emphasised that patient contact items ranked among the most contaminated surfaces within MRI suites [7]. The four narrative reviews examined either hospitals or imaging departments that had established IPC guidelines, yet none specifically addressed IPC in the context of a magnetic field [2,8,9,10].

This review highlights the lack of MRI-specific studies in relation to IPC. Many studies mentioned MRI as part of the medical imaging department but there was a lack of specific interventions and guidelines dedicated to the MRI environment. The intricacies of MRI environments and the vulnerability of staff and patients to infections necessitate specialised IPC skills and practices tailored for radiographers and other personnel operating within these settings.

Despite the critical role of IPC in healthcare, there is a noticeable deficit in evidence-based guidelines specifically addressing the needs and challenges faced in MRI suites.
Frances GRAY (Sydney, Australia), Yobelli JIMENEZ, Dania ABU AWAAD, Sarah LEWIS, Peter KENCH
14:00 - 15:30 #46104 - PG374 Resting State fMRI: Implementation Of A Quality Control Pipeline In The WELDFUMES Study.
PG374 Resting State fMRI: Implementation Of A Quality Control Pipeline In The WELDFUMES Study.

Functional MRI (fMRI) relies on blood oxygenation level-dependent (BOLD) signals, where neural activity–driven changes in oxygen consumption alter MR signal intensity. However, BOLD data are susceptible to neural and non-neural noise sources, head motion, and limitations of echo planar imaging [1]. Quality control (QC) is therefore needed to ensure data integrity and MR acquisition parameter consistency, particularly in multisite studies. This study developed a QC workflow combining qualitative and quantitative methods to assess resting-state (rs) fMRI data from a cohort of Swedish welders exposed to varying levels of manganese-containing welding fumes [2]. The aim was to use quantitative metrics to detect extreme outliers and to improve the overall data quality by minimizing exclusions.

Anatomical and rs-fMRI data were from the WELDFUMES study [2], involving 51 healthy male welders (ages 21–63) scanned at two sites using three 3T scanners: GE MR750w, GE Signa Premier, and Siemens Prisma. Imaging included T1-weighted fast gradient inversion recovery [2] and an EPI sequence (TR/TE: 1.5–2.5 s/30 ms; temporal resolution: 315–236 ms; voxel dimensions: 64×64 or 128×128) using 24", 48" and 64" channel head coils. Preprocessing of rs-fMRI and anatomical data, including realignment, unwarping [3, 4], and slice timing correction [5, 6], was performed using the CONN toolbox (RRID: SCR_009550, v22.v2407.a) [7,8] and SPM12 (RRID: SCR_007037, v12.7771) [9]. Volumes with frame-wise displacement >0.5 mm or BOLD signal >3 SD were classified as outliers [10, 11]. The outlier-excluded mean BOLD and anatomical data were normalized, co-registered into the standard MNI space, segmented into GM, WM, and CSF, smoothed (8 mm FWHM Gaussian kernel), and resampled (2 mm isotropic) [12, 13]. The default denoising pipeline in CONN [15] regressed out confounds (WM/CSF, motion parameters, and outlier scans), followed by high-bandpass filtering of BOLD signals above 0.01 Hz. Visual and automated QC was applied to the rs-fMRI and anatomical datasets: raw data QC assessed subject demographics, MR acquisition parameter consistency, and image quality; preprocessed data QC determined accuracy in segmentation, normalization, co-registration, and potential artifact; and denoised data QC evaluated the impact of residual noise on the distribution of functional connectivity. Sample-specific threshold values of Q3 + 3IQR or Q1 – 3IQR were used to identify extreme outliers [1].

One subject was excluded due to missing fMRI data. The fMRI sequence protocols differed in temporal resolution (TR = 1.5 or 2.5 s; 236 or 315 measurements) and spatial parameters (voxel sizes 3.4 x 3.4 x 3.7 mm³ or 3.8 × 3.8 × 3.6 mm³). Differences in RF sensitivity maps of the head coils (24", 48", and 64") may have contributed to signal variability in the BOLD data from the 48" and 64" coils, as shown in Fig. 1B. The effect of incorrect orientation on preprocessing is illustrated in Fig. 2. The results of the automated quantitative QC are shown in Fig. 3, where the metric Norm-Struct confirmed Subject 3's anatomical images as an extreme outlier due to incorrect slice orientation. In contrast, no extreme outliers were detected in the normalized (Norm-Func) and denoised (DOF) fMRI data; however, Subject 19 had 76 outlier scans, and a high MeanMotion was found in Subjects 19 (mean = 0.40) and 41 (0.41). Fig. 4 shows the distribution of functional connectivity (FC) and QC-FC correlations before (top) and after (bottom) denoising. FC was markedly biased and highly variable (mean correlation r = 0.23, SD = 0.305) but shifted closer to zero with reduced variability (r = 0.02, SD = 0.15) after denoising. The QC-FC association (r) had a mean = 0.03 (77% matches), SD = 0.13, which reduced to mean = 0.00 (88 % matches), SD = 0.16 after denoising.

In this study, we implemented an automated QC pipeline suitable for multisite MR data. Combining qualitative and quantitative methods, we assessed rs-fMRI data quality from the WELDFUMES project. Metrics such as Norm-Struct, Norm-Func, and visual inspection identified artifacts, acquisition inconsistencies, and evaluated key preprocessing steps including normalization, segmentation, and co-registration to MNI templates. Given the impact of motion and subject-specific factors on the BOLD signal, quantitative metrics such as MeanMotion, PVS, DOF, and FC distributions were used to improve the reliability of the fMRI data. QC-FC was then used to measure the association between functional connectivity and residual noise. Extreme outliers were defined using sample-specific thresholds, calculated as Q3 + 3 × IQR or Q1 – 3 × IQR [1]. A few subjects were in the extreme outlier zones (Norm-Struct, MeanMotion, and PVS, Fig. 3); however, there were no additional exclusions after denoising (DOF, Fig. 3).

In summary, the implemented QC workflow was highly effective at evaluating rs-fMRI data quality, and this approach could be adapted for task-based fMRI.
Mary ADJEIWAAH (Linköping, Sweden), Per THUNBERG, Gunilla WASTENSSON, Göran LIDEN, Bernt BERGSTRÖM, Louise FORNANDER, Peter LUNDBERG
14:00 - 15:30 #47924 - PG375 Dynamic Brightness and Contrast Adjustment for Enhanced Visualization of Medical Images in PowerPoint Presentations.
PG375 Dynamic Brightness and Contrast Adjustment for Enhanced Visualization of Medical Images in PowerPoint Presentations.

In medical imaging, accurate and clear visualization of diagnostic images is crucial for clinical decision-making, communication, and education. Magnetic Resonance Imaging (MRI) and similar modalities often rely on high-resolution images that may lose diagnostic value when displayed under poor lighting or with fixed contrast settings during presentations. This project addresses the limitations of static image enhancement by developing a real-time, user-controlled brightness and contrast adjustment tool integrated directly into Microsoft PowerPoint.

The developed tool utilizes Visual Basic for Applications (VBA) scripting within Microsoft PowerPoint, combined with Windows API functions, to allow users to adjust images of the current slide regarding brightness and contrast dynamically based on mouse movements and keyboard commands. The process begins when the user presses the "M" key, which triggers the monitoring. The program initializes the mouse position (startX and startY) and sets the variables isTracking = True and = False to start tracking mouse movements. The main loop then calculates the horizontal (deltaX) and vertical (deltaY) mouse movement to adjust brightness and contrast accordingly. As long as isPaused remains False, the adjustments continue. The brightness and contrast values are constrained within a range of 0 to 1. The program iterates through all shapes on the slide, checking if they are images (msoPicture). If so, the brightness and contrast are adjusted. Additionally, several key presses are monitored: "S" pauses the adjustments (isPaused = True), "R" resumes them (isPaused = False), and "X" resets all settings to their original values. Finally, the DoEvents function ensures the program responds to system events without freezing. The Program flow chart is shown in figure 2.

The tool enabled smooth, real-time image enhancement during PowerPoint presentations. It performed consistently across different medical image formats, including MRI, CT, and X-ray scans. Users were able to intuitively modify image properties mid-presentation, with immediate visual feedback. Enhanced visibility of fine details—such as tissue structure, lesions, or vascular patterns—was achieved, especially under suboptimal lighting. Presenters could adapt visual settings based on the audience and context, improving the clarity and effectiveness of medical communication.

The implementation proved to be robust and user-friendly. It required no prior image editing or additional software, making it practical for clinical, academic, and conference settings. The system allowed for dynamic, responsive control over image display without interrupting presentation flow. Feedback from test users highlighted ease of use, flexibility, and increased confidence in image-based explanations. The tool’s performance remained stable regardless of image resolution or presentation environment.

This project successfully introduced an intuitive, real-time brightness and contrast adjustment tool for PowerPoint-based medical image presentations. By leveraging native VBA capabilities and API functions, the solution improves diagnostic clarity without the need for external software. Future improvements could include window level/width adjustments for radiology applications and better support for high-resolution or compressed image formats. With continued refinement, the tool could become a standard feature for medical educators and clinicians aiming to enhance visual impact in digital presentations.
Amira ALOUANE, Helena NAWRATH, Amira ALOUANE (Hagen, Germany)
14:00 - 15:30 #45959 - PG376 Spoiled, Spoiled or Spoiled?
PG376 Spoiled, Spoiled or Spoiled?

Throughout MR literature, often an ambiguity arises with the term “spoiled” or “spoiling”. In the generic field of gradient-echo sequences (mostly abbreviated as “GRE” or “FFE”)[1,2], “spoiling” usually refers to measures aimed to reduce unwanted transverse magnetization. However, the sequence can be “spoiled” (or sometimes “crushed”) according to – at least – three different variants: - RF-spoiled, which involves phase-modulating the excitation pulses[3] by n^2 ϕ_0, where n is the pulse number and ϕ_0 the golden angle or some other optimized angle, which may be 117 or 150 degrees. - Incoherent-gradient-spoiled, where a net gradient area of varying size is applied between successive RF pulses. Although the use of this type of spoiling is somewhat archaic, it cannot be ruled out that “spoiling” refers to this spoiling variant. Coherent gradient echo applies a constant nonzero gradient area between any pair of successive RF pulses. According to some definitions[1,3], this variant is not to be called “spoiled” at all, since it does preserve transverse coherence, as do balanced sequences. Nevertheless, many papers do call this choice “spoiled” (see an incomplete but representative literature review in the supplementary material). Many acronyms for spoiled sequences are available, but these can be ambiguous on their own, so many authors just publish their sequence as “spoiled”. It is the purpose of this abstract to quantify the occurrence of adequate specification of this term.

A set of publications were selected to examine the specification of the word “spoiling” (or “spoiled”). The was selection that was primarily drawn from references used in my PhD thesis and underlying publications[4–6]. A further selection criterion was the presence of the string “spoil” (as in spoiling, spoiled, spoiler) in the context of gradient-echo sequences. Hits in references were not considered. This delivered over 80 hits. By a random selection, the set was further limited to 50 hits. In these publications, the string “spoil” was examined on whether • It clearly specified the type of spoiling (e.g. by mentioning “RF-“, “Incoherent gradient-“ or “Coherent gradient-“ in the immediate vicinity of the word “spoiling”) or the immediate context specifies the type of spoiling. • It mentions “gradient spoiling”, without clarifying whether it is coherent or incoherent. • It is specified as “SPGR”, which may be RF-spoiling or incoherent gradient-spoiling. • Or it just mentions “spoiling”, leaving the reader to search through the context to guess which type of spoiling is used. The “immediate context” was defined as within one page of the first occurrence of the word “spoiling” (or “spoiled”).

Details of the list of publications can be seen in supplementary material (https://doi.org/10.5281/zenodo.15201724). The results are visualized in Figure 1.

Although the MRI-world is not really scarce on acronyms, there is no straightforward and unambiguous acronym for the coherent gradient-echo case. “FFE” (the Philips-entry in the MR-TIP[2] table) is clearly ambiguous, since “FFE” is also used as an umbrella-term for all types of gradient-echo sequences. Also “Spoiled FFE” is ambiguous, since it also can refer to RF-spoiled gradient-echo. “FISP” might be an unambiguous acronym, but this term is somewhat troubled by the presence of the technology called “trueFISP” (balanced, i.e. zero net gradient area between successive pulses). Is “FISP” then an umbrella term encompassing “trueFISP” as well as something like “untrue FISP”, or does “FISP” just refer to the latter? Is “FISP” referring exclusively to the “untrue” version of itself? “SSFP” (Steady-State Free Precession) might be another candidate for an unambiguous term for a sequence using coherent gradient spoiling. But it isn’t: although the one-time Shimadzu acronym referred indeed to coherent gradient spoiling, the MR-TIP table puts the GE-term “SSFP” in the same row as the Siemens-term “PSIF” (a Siemens-term referring specifically to the echo before the RF-pulse in a coherent gradient spoiling sequence); then it adds to the confusion by stating “A new family of steady state free precession sequences use a balanced gradient (…)” – which seems to make “SSFP” also an umbrella term. Such ambiguities might cause researchers to avoid acronyms altogether and specify their sequence as “spoiled”. Yet, as shown, 38% of publications insufficiently specify the type of spoiling.

When discussing gradient-echo MR sequences, the word “spoiled” (or “spoiling”) should not be used in isolation; these terms should be padded with either “RF”, or with “incoherent gradient-“, or with “coherent”. The latter (i.e. coherent spoiling, or coherent gradient-spoiling) should be read as “Gradient-echo sequence with a constant unbalanced gradient moment in each TR”. Of course, it is equally valid to not call this “spoiling” at all[1,3].
Miha FUDERER (Utrecht, The Netherlands)
14:00 - 15:30 #47808 - PG377 How to set acquisition parameters for accurate quantification of magnetic susceptibility? Application to Parkinson's disease.
PG377 How to set acquisition parameters for accurate quantification of magnetic susceptibility? Application to Parkinson's disease.

One of the hypotheses explaining the origin of Parkinson's disease (PD) is the abnormal deposition of iron in specific deep gray nuclei (DGN) [1]. In vivo quantification of iron from magnetic susceptibility (χ) maps obtained by quantitative susceptibility mapping (QSM) could provide an early neuromarker of PD. In this clinical context, optimization of acquisition parameters (number of echoes, spatial resolution, bandwidth) is important for robust χ quantification with reduced acquisition time [2].

Phantom: Tubes containing solutions of Dotarem® (Gadoterate Meglumine; 0.5 mmoL.ml-1; Guerbet; France) (Fig. 1) at various concentrations of known χ [3]. Healthy volunteers: Thirty-two healthy volunteers (HV) with no history of neurological disorder were recruited from 2021 to 2024 (Clinical trial NCT05107232; Univ. hospital of Rennes) and divided into two age groups (group 1: n=16; sex ratio=1; age=22±1 years and group 2: n=16; sex ratio=1; age=49±2 years). MRI data acquisition: QSM data were acquired at 3 T (Magnetom Prisma VE11C; Siemens Healthineers; Erlangen; Germany) using a 64-channels head coil. For phantom and HV, a 3D monopolar susceptibility weighted imaging (SWI) multi-gradient-recalled-echo (MGRE) sequence was used. Several parameters were evaluated such as the number of echoes, TR, TEmin/ΔTE, spatial resolution, and bandwidth. All acquisition parameters are resumed in Table 1. Acquisitions on phantom were repeated five times, during different MRI sessions. For HV, the protocol included 3D anatomical T1 and T2 weighted anatomical images (T1w and T2w) with a spatial resolution of (1 mm)3 to segment the DGN of interest. Image processing: Reconstructions of χ maps were computed on MATLAB (v2017Rb) using Sepia (v1.1.1). For phantom, the FSL brain extraction tool was manually settled to adapt it to the geometry of the tubes and three processing pipelines were evaluated [4]. The ImageJ (v1.53g; National Institute of Health) software was used to quantify the mean χ values and standard deviation (SD) of each manually traced ROI on χ maps. For HV, phase unwrapping, background field removal and field to susceptibility inversion were processed using an in-house developed processing pipeline based on ROMEO, PDF and MEDI algorithms [4] to calculate χ maps (Fig. 1, Fig. 2-A). In addition, six regions per hemisphere were segmented from the T1w image using the recon-all process of FreeSurfer [5] (v7.2.0) (caudate nucleus (CN), putamen (Put), globulus pallidus (GP)), and from the T2w image using pBrain [6] (substantia nigra (SN), red nucleus (RN) and subthalamic nucleus (STN)). The mean χ values and SD of each DGN were quantified using 3D Slicer (v5.6.2). Statistical analysis: For phantom, a non-parametric statistical test was performed to compare χ quantification between the acquisition parameters. For HV, a parametric statistical test was performed to compare χ values quantified in the DGNs between the two groups.

On phantom, increasing the spatial resolution involved an underestimation of the χ, due to the loss of signal-to-noise ratio, while reducing the number of echoes enabled reliable quantifications until five echoes. These observations led us to concentrate our in vivo acquisitions on the MGRE sequences up until five echoes. For HV, reducing the number of echoes from eight to five gave a quantification consistent with the literature [7] (Fig. 2-B), and no statistically significant difference was observed in function of the number of echoes used except in the group 2 for CN (8 vs 6 echoes and 8 vs 5 echoes: p<0.05). The aging effect was observed for the protocol using height, six and five echoes and was statistically significant for five DGN out of six (CN, Putamen, GP, RN: p<0.01; STN: p<0.05) demonstrating the robustness of a five-echo MGRE sequence in vivo.

In vitro, reducing the number of echoes from eight to five not impaired χ quantification. However, we demonstrated in vitro that a SWI MGRE sequence with only four echoes did not produce accurate and reproducible χ quantification within the ranges targeted in the DGN. In vivo, changing the spatial resolution from (1.5 mm)³ to (1 mm)³ not improved χ quantification. However, reducing the number of echoes to five allowed us to obtain a robust χ quantification consistent with the literature [7], while still enabling the detection of aging effect. These optimizations allowed us to reduce the acquisition time from 6mins31s to 3mins48s. The sequence is ready for inclusion in a multiparametric clinical protocol, with a spatial resolution of (1.5 mm)³.

These results make it possible to apply the MGRE with five echoes acquisition protocol on PD patients for in vivo quantification of χ in DGN, to explore the potential of this new neuromarker for monitoring PD progression and identifying various profiles of patients.
Aurélien HERVOUIN (Rennes), Pierre LEMOIS, Guy PECHEUL, Johanne BEZY-WENDLING, Fanny NOURY
14:00 - 15:30 #47922 - PG378 4D MR spirometry across magnetic field strengths: a multicentric travelling healthy volunteer study at 0.55, 1.5 and 3T.
PG378 4D MR spirometry across magnetic field strengths: a multicentric travelling healthy volunteer study at 0.55, 1.5 and 3T.

Lung MRI has long been constrained by intrinsically low proton density, short T2* relaxation times—limitation that is enhanced at high magnetic field strengths making it challenging [1]. Recent advances in ultra-short echo time (UTE) sequences and self-navigated respiratory gating now enable time-resolved, 4D pulmonary (3D + time) MRI in free-breathing conditions [2,3]. In this context, low field MRI systems (<0.55T) offer a trade-off between SNR and T2* relaxation [4]. Also, lower requirements for field homogeneities allow wider bores enhancing accessibility for claustrophobic or dyspneic patients. This study investigates the impact of magnetic field strength on image quality and dynamic pulmonary function assessment, using the exact same MR sequence. We hypothesize that the trade-offs inherent to field strength—particularly regarding signal-to-noise ratio and relaxation properties—can be quantified and exploited to optimize MRI-based lung imaging, with the potential of low-field systems for reproducible, radiation-free, region-specific imaging in free-breathing conditions.

Lung MRI was performed at 0.55T, 1.5T, and 3T (Free.Max, Sola, Skyra; Siemens-Healthineers) using a custom dynamic center-out radial UTE spoiled GRE sequence [5] with AZTEK trajectory sorting [3] and self-navigated respiratory gating. To ensure intra-subject comparability, the same healthy volunteer was scanned across three different clinical sites. The UTE sequence consists of a center-out radial acquisition lasting 11min with: TR/TE/flip angle=3ms/0.03ms/4°, FOV 32x32x30cm3, voxel size (2mm)3, matrix size [160,160,150]. The maximum gradient amplitude and slew rate were constrained by the lower hardware performance of the 0.55T system (15mT/m and 40T/m/s). Retrospective respiratory gating and image reconstruction were computed for 32 respiratory gates [6]. To assess the impact of magnetic field strength on image quality, respiratory-resolved images were evaluated based on the following criteria: the visibility and spatial extent of the pulmonary vascular tree and the contrast-to-noise ratio (CNR). CNR is computed as the ratio between lung-liver signal and the noise. To enable future inter-subject comparison, accurate lung segmentation is needed. Segmentation quality relies on sufficient CNR and clear delineation between lung parenchyma and adjacent muscular structures. Special attention was given to the diaphragm, whose substantial respiratory motion makes it especially challenging to segment consistently. The 4D MRI acquisition also provided full diaphragmatic coverage across the respiratory cycle, allowing dynamic segmentation required for registration and subsequent comparative analysis.

The visualization of the pulmonary vascular tree was assessed using MIP over 2 cm sagittal plane (Fig. 1). At both 0.55T and 1.5T, vessels were clearly visible up to the second generation, with well-defined contours and consistent parenchymal contrast. In comparison, at 3T, vascular structures appeared with lower contrast, and vessel contours were less defined. Qualitative assessment of the lung–diaphragm interface (Fig. 2) revealed notable differences in anatomical sharpness across field strengths. The signal profiles were sharply delineated at 1.5T, moderately at 0.55T and blurred at 3T. Quantitative analysis of CNR further supported these findings with the highest CNR observed at 1.5T CNR₁.₅=34, followed by 0.55T, CNR₀.₅₅=20, and lowest at 3T, CNR₃=4.9. To evaluate dynamic image consistency, respiratory-resolved images were analyzed across multiple gates (Fig. 3). The spatial distribution of normalized signal intensity remained stable across the respiratory cycle for all systems. However, minor motion blur was observed in gates corresponding to phases of high airflow particularly at 3T.

Our findings demonstrate that magnetic field strength has a direct impact on 4D lung MRI quality. While 1.5T provided the best compromise between anatomical sharpness and signal stability, 0.55T preserved essential structural details despite a lower CNR. The poor results at 3T are non-satisfactory and could be due to technical limitations. This can lead to a less effective retrospective gating resulting in lower SNR and under sampling artefacts after reconstruction [7]. Improvements are underway to reduce the noise of the 0.55T and refine the reconstruction of the 3T system.

In a travelling volunteer at 3T, 1.5T and 0.55T across three sites, 4D lung MRI was successfully reconstructed over 32 respiratory phases. Respiratory gating and anatomical delineation of the vascular tree and diaphragm were optimal at 1.5T and very encouraging at 0.55T. These findings support the potential of low and intermediate fields with ongoing developments aimed at optimizing low-field acquisition and reconstruction.
Timothee CAUSSIN (Orsay), Alexiane PASQUIER, Anna REITMANN, Samia BOUSSOUAR, Aurelien MASSIRE, Naila BOUDIAF, Rose Marie DUBUISSON, Xavier MAITRE, Angeline NEMETH, Marie POIRIER QUINOT
14:00 - 15:30 #47944 - PG379 Evaluating methods for scanner harmonisation in T1w MRI (Cam-CAN Study).
PG379 Evaluating methods for scanner harmonisation in T1w MRI (Cam-CAN Study).

MRI data often lacks robustness due to variability introduced by site, scanner type, and hardware/software changes over time [1,2,3]. This variability can impact downstream analyses of brain structure, including measures of healthy tissue or lesion volumes [4,5]. The Cam-CAN dataset is a longitudinal, multi-modal, single-site study collected over 12 years, during which two major hardware changes occurred: a gradient coil replacement and a scanner upgrade (PRISMA vs. TRIO) [6]. We evaluated the robustness of Cam-CAN T1w structural data against these changes and whether pre- and post-processing techniques reduced effect sizes.

Two different datasets were used to evaluate hardware changes and FreeSurfer was used for cortical parcellation of 68 ROIs, with visual quality assessment and outlier detection. Inter- and intra- canner differences were assessed in a Traveling-Heads (n=20) repeated measures dataset of 5 patients each scanned twice on both TRIO and PRISMA within two weeks. Skull stripped images were pre-processed using three time-based (Z-Score, White-Stripe, Kernel Density Estimation, Fuzzy Clustering) and 2 sample-based (Nyul histogram matching and Least-Square Means) SI normalisation techniques. Intensity comparisons were conducted using normalized overlap (intersection), Kullback-Leibler (KL) divergence, and the standard deviation of subject-level normalized mean intensity (SD NMIs). Effects on ROI thickness measures were compared using Coefficient of Variance (CoV), ANOVA, and paired t-tests (with Bonferroni correction). The gradient-coil change was assessed on 89 matched subject pairs (matched on sex, handedness, and age) and assessed the efficacy of NeuroCombat harmonisation in mitigating these coil-related biases. We first quantified coil-related effects in the raw data using paired t-tests and Cohen’s d (with FDR correction) across ROIs, both unadjusted and age-adjusted via linear mixed-effects models (LMMs). NeuroCombat-harmonised outputs were then subjected to the same analyses. We compared harmonised vs. original values using (1) scatterplots with Pearson r and RMSE, (2) Bland–Altman plots (bias ±1.96 SD).

Scanner (TRIO vs PRISMA): Across all inter-scanner comparisons, the observed overlap values ranged from 0.84 to 0.98 and maximum KL divergence observed was 0.06 (approximately a percent similarity of 94%) which indicated high overlap between distributions. No inter-scanner ROI differences were detected (p<0.05). We examined intensity differences across scanners (PRISMA vs. TRIO) by calculating the standard deviation of subject-level normalized mean intensity (SD NMIs) across all four scanning sessions. Significant scanner-related differences (p<0.05) were observed in repeated measures ANOVA and paired t-test comparisons in up to 27% of ROIs depending on the normalisation technique used. Non-normalised images demonstrated scanner related differences in 9.7% of ROIs. Nyul and LSQ pre-processed images affected 5.5% of ROIs, while other pre-processing techniques demonstrated an increased scanner variability ranging from 13% to 16%. Gradient-coil change: Coil replacement induced moderate biases (Cohen’s d range ≈ –0.30 to +0.28; 12/82 ROIs significant at FDR < 0.05), persisting after age adjustment (β-coil range ≈ –0.27 to +0.25; 9 ROIs significant). NeuroCombat compressed effect‐size distributions to near zero (d range ≈ –0.02 to +0.02; no ROI significant post–FDR), whether unadjusted or age‐adjusted. There was a strong preservation of inter-subject variance (median Pearson r > 0.97; RMSE < 2% of mean volume across sampled ROIs), minimal systematic offsets on Bland–Altman (mean bias < 0.5% of mean ROI value; limits of agreement ±3%).

Scanner change introduce measurable shifts in raw intensities but had limited effects after FreeSurfer processing. The effects of pre-processing methods on ROI thickness measures were mixed, some introduced variability, while sample-based normalization techniques modestly improved scanner consistency. Although scanner-related differences were still detected in some analyses, their overall impact was limited. Gradient-coil–driven differences are not significant in FreeSurfer cortical thickness measures but NeuroCombat demonstrated a reduction in bias and compressed effect-size. These findings support its use in harmonising structural MRI data across scanner hardware changes in longitudinal and multi-site studies.

Limitations of our study included a small traveling-heads sample. Given, the small size, it would be useful to further explore of sample-based SI normalisation techniques to reduce scanner variability in FreeSurfer derived cortical thickness measures. Future work could test multi-site generalizability of these techniques in combination with ComBat. Overall, our findings support the robustness of the Cam-CAN dataset across major hardware changes but suggest that intensity pre-processing could further enhance inter-scanner consistency in structural MRI analyses.
Tanvi RAO (Cambridge, United Kingdom)
14:00 - 15:30 #47787 - PG380 Assessing the role of ASL for accurate diagnosis of neurodegenerative diseases: a study in a memory clinic.
PG380 Assessing the role of ASL for accurate diagnosis of neurodegenerative diseases: a study in a memory clinic.

Dementia encompasses a group of clinical syndromes characterized by progressive decline in cognitive functions, most often caused by neurodegenerative diseases such as Alzheimer’s disease (AD), frontotemporal dementia (FTD), or Lewy body dementia (LBD). [1] Differentiating between these etiologies, particularly in the prodromal or early symptomatic stages, remains a clinical challenge. Neuroimaging has become essential for differential diagnosis, using structural MRI or [18F]-FDG PET. However, FDG PET involves exposure to radiation and a high cost together with limited availability. Arterial spin labeling perfusion MRI (ASL-MRI) appears to be a promising biomarker for the assessment of neurodegenerative diseases, providing a quantitative, non-invasive measure of cerebral perfusion. [2] However, its clinical adoption is hindered by lower signal-to-noise ratio and sensitivity to artefacts, and need to be more explored before clinical use. This study aims to compare the diagnostic performance of multiple neuroimaging modalities—structural MRI, FDG-PET, and ASL-MRI—in differentiating major neurodegenerative dementia syndromes in a clinical setting.

The study population included 78 patients with typical AD, 11 with behavioral-variant FTD (bvFTD), 8 with semantic-variant FTD (svFTD), 13 with LBD, and 15 healthy controls (HC). Imaging data—including 3D T1-weighted MRI, ASL-MRI, and FDG-PET—were acquired using a single GE Healthcare Signa 3T PET/MR hybrid scanner. Two ASL sequences were employed in the study: a single-delay 3D pCASL sequence and a multi-delay sequence incorporating seven distinct post-labeling delays. Image preprocessing was conducted using SPM12 to obtain grey matter modulated probabilistic maps, FDG-PET scans and CBF maps in MNI space. Regions of interest (ROIs) were defined using 94 cortical regions from the AAL3 atlas [3], from which regional volumes, mean glucose metabolism, and mean cerebral blood flow were extracted. ASL sequence harmonization was performed at regional levels using the NeuroCombat algorithm. [4] Voxelwise group comparisons between patient subgroups and HC were conducted for each imaging modality using SPM12. Direct voxelwise comparisons between modalities were then carried out using W-score maps. [5] Covariates for all analyses included age, sex, total intracranial volume (for T1-MRI analyses) and sequence type (for ASL). Sparse Partial Least Squares Discriminant Analysis (sPLS-DA) was performed using the mixOmics R package [6] for three models: using regional volumes from T1-MRI alone (T1 model), combined with FDG-PET measures (T1+FDG-PET model), or with ASL measures (T1+ASL model) to classify AD, FTD (bvFTD and svFTD) and HC. Performance of the three models was evaluated using leave-one-out cross-validation and area under the curve (AUC) metrics to assess group discrimination.

In AD, atrophy was pronounced in the medial temporal regions, especially the hippocampus (pFWE<0.05), while FDG-PET showed bilateral hypometabolism in the parietal regions, posterior cingulate, precuneus, medial temporal areas, and in the dorso-prefrontal cortex. ASL revealed perfusion deficits in the parietal and posterior cingulate regions but with much less intensity and extent. In bvFTD, MRI and FDG-PET demonstrated predominant frontal lobe abnormalities (puncor<0.001), which were not consistently captured by ASL. In the case of svFTD, all identified modalities revealed left anterior temporal abnormalities, with ASL changes exhibiting less marked severity (puncor<0.001). In LBD, no significant atrophy was observed (puncor<0.001), but FDG-PET revealed hypometabolism in the occipital, parietal, and temporal lobes; ASL showed limited left parietal perfusion reduction. Intermodality discrepancies were observed across syndromes. In AD, greater limbic atrophy contrasted with broader parieto-temporal hypometabolism and hypoperfusion. In bvFTD and svFTD, structural and metabolic abnormalities exceeded perfusion deficits. In LBD, hypometabolism was more widespread compared to other modalities. The ability to discriminate between groups was enhanced by the addition of either FDG-PET or ASL to T1-weighted imaging. However, the discriminative performance of the T1+FDG-PET model was comparable to that of the T1+ASL model.

Despite less extensive abnormalities than FDG-PET, ASL showed similar spatial patterns and comparable classification performance, supporting its clinical relevance. [7-8] Limitations include diagnostic group imbalance, with AD predominance reflecting typical prevalence; ongoing recruitment aims to address this. Two ASL sequences were used, with statistical adjustments for quantification differences.

Combined with structural MRI, ASL offers diagnostic accuracy comparable to FDG-PET in differentiating neurodegenerative dementias, supporting its potential as a non-invasive alternative. Further recruitment will clarify its clinical value across syndromes.
Mathilde NGUYEN (Paris), Nicolas VILLAIN, Sonja PETROVIC, Romain VALABREGUE, Hugo BONIFACE, Rahul GAURAV, François SUZANNE, François-Xavier LEJEUNE, Sana REBBAH, Aurélie KAS, Marie-Odile HABERT, Nadya PYATIGORSKAYA
14:00 - 15:30 #47375 - PG381 Gray Matter Volume Estimation from DWI Segmentation in Ischemic Stroke: A Practical Workflow in a Low-Resource Clinical Setting.
PG381 Gray Matter Volume Estimation from DWI Segmentation in Ischemic Stroke: A Practical Workflow in a Low-Resource Clinical Setting.

Stroke remains a major contributor to global disability and death, ranking fourth in disability-adjusted life-years (DALYs) according to the Global Burden of Disease Study 2021 [1]. In Indonesia, the 2023 National Health Survey reported a stroke prevalence of 0.83% among individuals aged ≥15 years, reflecting a persistent public health burden despite a slight decline from previous years [2,3]. Ischemic stroke, caused by focal infarctions in cerebral, retinal, or spinal regions [4], can alter gray matter volume (GMV). GMV changes have been observed in patients with ischemic thalamic stroke [5] and with atrial fibrillation [6]. Diffusion-Weighted Imaging (DWI), a magnetic resonance imaging sequence sensitive to water diffusion [7], enables early infarction detection [8] and reveals GMV remodeling post-stroke [9]. DWI also enhances gray matter visualization due to its higher diffusion coefficient [7,10]. Given DWI’s accessibility in both tertiary and secondary care settings, this study aims to assess GMV alterations in ischemic stroke patients using a pragmatic, low-resource image processing workflow, with minimal computational dependency.

This study was conducted at the Radiology Department of Syaiful Anwar General Hospital, Malang, Indonesia, using 1.5 T and 3 T MRI scanners, RadiAnt DICOM Viewer, and MATLAB 2014b. The materials included ten axial DWI images from ischemic stroke patients and ten from healthy individuals. As shown in Figure 1, DICOM images were randomly selected and converted to JPEG. Parameters such as TR, TE, and b-values were analyzed. Image processing steps (Figure 2) included RGB-to-grayscale conversion, high-pass filtering, histogram matching, and median filtering to enhance contrast. Segmentation was performed to identify CSF, white matter, and gray matter using thresholding. The segmented image was converted to HSV to facilitate gray matter extraction through masking. Gray matter volume was then calculated and compared between stroke and normal groups to assess structural differences.

DWI acquisition revealed long TR values (2,700–5,900 ms), short TE (82–87 ms), and high b-values (1,000 s/mm²), suitable for tissue contrast and diffusion sensitivity. CSF appeared hypointense, while gray matter displayed hyperintensity due to its restricted diffusion. These imaging features were consistent across all patient and control datasets. Post-segmentation threshold values did not differ significantly between groups (p > 0.05). Mean GMV in ischemic stroke patients was 14.340 cm³, compared to 14.870 cm³ in healthy controls. Although stroke patients consistently showed reduced GMV across age groups, the difference was not statistically significant (p > 0.05). Variability in pixel spacing, slice thickness, and patient age likely contributed to the absence of significance. However, the segmentation pipeline successfully differentiated gray matter from other tissues in all samples, demonstrating reliability in a basic thresholding framework.

This study demonstrates a cost-effective DWI-based image processing workflow capable of extracting and quantifying gray matter volume in ischemic stroke patients. Although limited by a small sample size and the use of basic threshold-based segmentation, the approach remains viable in resource-limited hospital environments where advanced image processing infrastructure is unavailable. The imaging parameters used—long TR, short TE, and high b-values—align with established DWI protocols for optimal infarct visualization and diffusion sensitivity. While the non-significant GMV reduction may reflect infarction-related atrophy, such changes might be masked by demographic variability and differences in image resolution. Moreover, the lack of statistically significant findings should not diminish the practical importance of this pipeline, especially in developing settings. Importantly, this study highlights the feasibility of GMV estimation without reliance on atlas-based segmentation or machine learning algorithms, offering a starting point for further innovation. Future directions include expanding the sample size, standardizing voxel geometry, and integrating automated segmentation via convolutional neural networks to enhance diagnostic throughput.

Using DWI and a straightforward image processing method, this study demonstrates the potential to quantify gray matter volume in ischemic stroke patients, even in environments with limited computational resources. While no statistically significant difference in GMV was observed between stroke and control groups, the methodology reliably segmented gray matter and captured consistent volumetric trends associated with ischemic insult. These results reinforce the value of DWI as a versatile imaging modality for both diagnostic and research purposes. The developed workflow may serve as an initial framework for low-cost, quantitative stroke imaging and can be enhanced with automated tools in future studies for broader clinical use.
Dian Yuliani ALAM (Heppenheim, Germany), Johan Andoyo Effendi NOOR, Yuyun Yueniwati PRABOWOWATI WADJIB
14:00 - 15:30 #47368 - PG382 Resveratrol protection against cardiac remodeling and ischemia-reperfusion injury in a diet induced prediabetic female rat model: in vivo and ex vivo longitudinal study.
PG382 Resveratrol protection against cardiac remodeling and ischemia-reperfusion injury in a diet induced prediabetic female rat model: in vivo and ex vivo longitudinal study.

Cardiovascular diseases (CVD) are one of the leading causes of mortality and morbidity in patients with type 2 diabetes [1]. Those CVD, such as coronary artery disease or stroke [2–4], can arise before diabetes onset, at the prediabetic stage, with a greater risk for women [5]. Despite being an interesting therapeutic window due to its reversibility [6], first line treatments for prediabetes (lifestyle interventions) do not usually focus on the early cardiac alterations associated with prediabetes [7] and lack cardioprotective effects [8]. Investigating new sex dependent therapeutic strategies is then essential to limit cardiovascular complications in prediabetic women. Resveratrol (RSV) supplementation has previously shown cardioprotective effects on type 2 diabetic female rats [9]. We therefore aimed to compare its effects on the heart of prediabetic female rats to those induced by diet intervention, one of the conventional first line treatments.

40 female Wistar rats were divided into 4 groups fed for 5 months with a standard diet (CTRL), High-Fat-High-Sucrose (HFS) diet, HFS diet supplemented with RSV (1mg/kg/day in drinking water) during the last 2 months (RSV) or HFS diet for 3 months followed by 2 months of standard diet (RSD). We performed a longitudinal in vivo study of cardiac morphology, function and perfusion by magnetic resonance imaging at the 3rd and 5th months. Rats underwent an intraperitoneal glucose tolerance test to evaluate their prediabetic status. Finally, ex vivo experiments on isolated perfused hearts at 5 months were performed to simultaneously study cardiac function (Rate Pressure Product (RPP)) and energy metabolism (Phosphocreatine (PCr), ATP) with 31P magnetic resonance spectroscopy, during an ischemia-reperfusion injury (IR). Experimental protocol is shown in Figure 1.

After 3 months of HFS diet, increased myocardial wall thickness (MwT) and perfusion (p<0.01 vs CTRL) were found. HFS diet also induced elevated left ventricular end diastolic volume ((LVEDV) p<0.01 vs CTRL) and mass (LVM) (p<0.05 vs CTRL), along with glucose intolerance at the 5th month (p<0.05). HFS diet increased heart weight to tibia length ratio (HTLR) (p<0.01 vs CTRL), a known cardiac hypertrophy estimator [10]. HFS diet consumption was also associated with alteration of basal myocardial function and tolerance to IR, as shown by impaired RPP (p<0.001) and lower PCr and ATP during reperfusion (p<0.05, p<0.001 vs CTRL). Furthermore, HFS diet induced elevated end diastolic pressure (EDP) throughout the IR protocol (p<0.05 vs CTRL). RSV supplementation restored LVEDV, MwT and LVM (p<0.05 vs HFS), improved glucose tolerance (p<0.05 vs HFS) but exhibited no significant effect on myocardial perfusion. In addition, RSV restored HTLR to CTRL level (p<0.001 vs HFS) and improved myocardial tolerance to IR, characterized by higher RPP (p<0.05 vs HFS) with increased ATP and PCr during reperfusion (p<0.05 vs HFS). Interestingly, RSV also restored EDP over the course of the IR protocol duration (p<0.05 vs HFS). Alternatively, RSD exhibited no effect on LVEDV, MwT, LVM and perfusion impairments (p<0.01 vs CTRL) but restored glucose tolerance (p<0.001 vs HFS) at the 5th month. Furthermore, RSD failed to improve the elevated HTLR and EDP for the whole duration of the IR protocol (p<0.05 vs CTRL) but ameliorated tolerance to IR, characterized by increased RPP (p<0.05 vs HFS) and higher PCr and ATP during reperfusion (p<0.001, p<0.01 vs HFS).

5 months of HFS diet induced prediabetes, deleterious cardiac remodeling, increased myocardial perfusion but also reduced tolerance to IR injury, characterized by decreased myocardial function and PCr, ATP, as previously found in other prediabetic models [11–13] but also patients [14–16]. The two therapeutic approaches exhibited different cardioprotective effects here. RSV protected against deleterious cardiac remodeling induced by HFS diet in vivo and ex vivo but also improved glucose tolerance and myocardial susceptibility to IR injury. Interestingly, 2 months of a return to standard diet had no effect on deleterious cardiac remodeling induced by HFS feeding. However, RSD restored glucose tolerance to control levels but only improved myocardial susceptibility to IR injury. This observation could be explained in part by the lack of an effect on deleterious cardiac remodeling.

Interestingly, RSV, despite maintained HFS feeding, exhibited a stronger cardioprotective effect than 2 months of return to standard diet. Further studies are warranted to uncover the mechanisms involved, with a particular interest in mitochondrial function and oxidative stress. However, these results suggest that RSV supplementation could be an interesting approach to address the cardiac alterations associated with prediabetes, especially for women, which are at greater risk of CVD than men.
Alexis JOUENNE (MARSEILLE 05), Isabelle VARLET, Christophe VILMEN, Frank KOBER, Monique BERNARD, Martine DESROIS
14:00 - 15:30 #47853 - PG383 Evaluating the impact of pregnancy on cerebrovascular function.
PG383 Evaluating the impact of pregnancy on cerebrovascular function.

Cerebrovascular reactivity (CVR), the brain's ability to regulate blood flow in response to stimuli, is a critical indicator of cerebrovascular health. Impaired CVR has been shown in neurodegenerative diseases, such as Alzheimer’s [1], which has disproportionally higher prevalence in women [2]. Pregnancy represents a female-specific life event that leads to significant neuroanatomical changes, including in grey matter (GM), that remain years after baby delivery [3]. Women with a history of hypertension during pregnancy have been shown to exhibit reduced CVR [4] and increased dementia risk [5] compared to women with normotensive pregnancies, however the impact of pregnancy without hypertension on cerebrovascular health is not clear. In this work we investigate whether pregnancy history is associated with changes in global and regional CVR.

Multiple post labelling delay (multi-PLD) pCASL data (6 PLDs 250-1500ms, labelling duration 1400ms, 3.5x3.5x4.5mm³) from 40 female subjects was acquired on a 3T Siemens Prisma scanner during two conditions, normocapnia (6 min) and hypercapnia (5% CO2, 3 min). Six participants were excluded due to data quality issues. Analysis included two groups of women post-partum (14.9±5.8 months post-delivery): (1) normotensive pregnancy (n=13, 34.5±3.3 years), (2) hypertensive pregnancy (n=3, 33.3±2.1 years), and an age-matched group with 18 women that have never been pregnant (31.7±5.1 years). ASL data were analysed with FSL tools, including BASIL [6], yielding maps of CBF and arterial arrival time (AAT). Structural images were segmented to retrieve GM masks. Internal carotid artery velocities from phase contrast data were used to estimate labelling efficiency [7] and perfusion maps calibrated by hemisphere- and subject-specific labelling efficiency. CVR was calculated as the absolute change in perfusion over the change in end-tidal pCO2. Global and GM CVR and CBF metrics were compared using t-tests (p<0.05). A voxelwise analysis of CVR and resting CBF was performed using Randomise (threshold-free cluster enhancement, 5000 permutations) with age as covariate.

No statistically significant differences were found in either global or GM CVR between women with no history of pregnancy and women with a history of normotensive pregnancy (Figure 1). Similarly, no differences were detected in normo- or hypercapnic CBF between these groups (Figure 2). Voxelwise analysis did not identify any regions of statistical significance. Descriptively, CVR metrics were lower in the group of women with hypertensive pregnancy disorders (Figure 3), but statistical analysis was precluded by the limited sample size.

In contrast with previous reports of brain anatomical changes that persist years after baby delivery, cerebrovascular changes, evaluated through CBF and CVR, seem to be preserved following normotensive pregnancy. The preliminary observation of reduced CVR in women with history of hypertensive pregnancy disorders aligns with previous research and calls for further investigation in a larger cohort. It also highlights how CVR, as a functional measure, complements measures of CBF in assessing cerebrovascular function.

Using ASL MRI with hypercapnic challenge, we found no significant differences in global CBF and CVR between postpartum women with normotensive pregnancy history and women that have never been pregnant, suggesting preserved cerebrovascular function despite other research finding structural brain adaptations. These findings contribute to the growing body of research on the impact of sex-specific life events on brain health.
Lise KLAKSVIK (Oxford, United Kingdom), Daniel BULTE, Joana PINTO
14:00 - 15:30 #47741 - PG384 MRI-based comparison of aortic blood flow in rabbits under physiological and extracorporeal circulation.
PG384 MRI-based comparison of aortic blood flow in rabbits under physiological and extracorporeal circulation.

Extracorporeal circulation (ECC) is vital in cardiac surgery [1], yet its effects on flow dynamics and tissue perfusion are still debated. Comparing ECC with physiological blood flow is essential for understanding these effects. MR imaging of moving organs requires advanced tracking for reliable results [2]. In addition, the wide range of flow velocities during ECC present specific challenges for phase-contrast MRI. To explore the impact of the different perfusion types, we compared aortic flow during ECC with physiological conditions in a rabbit model using MRI. Non-pulsatile flow was measured using an MR-compatible ECC set up [3], while physiological flow was assessed using navigator-guided, retrospectively gated imaging, both in anesthetized rabbits.

All MR data were acquired from healthy rabbits using a 9.4 T Bruker BioSpec equipped with a Tx/Rx birdcage coil. Rabbits were examined under 3 perfusion conditions —physiological, antegrade, and retrograde—each tested on 7 rabbits. Flow MRI covered the entire aorta and major branching vessels, divided into thoracic, abdominal, and pelvic segments, achieving an isotropic spatial resolution of 0.5 mm. For the continuous ECC blood flow, a specialized MRI protocol utilized 3 Venc values (200, 50, and 20cm/s, TR/TE: 7.5/3.5ms) allowing for accurate reconstruction of a wide velocity range (Fig. 1). For physiological blood flow, Bruker’s FLOWMAP was adapted by adding a navigator, eliminating the need for complex physiological recording (TE/TR: 4/9.3ms, Venc: 100cm/s, 14 oversamplings), and retrospective gating was used to reconstruct pseudo-dynamic physiological flow (Fig. 2) [4]. All datasets were processed using ROMEO phase-unwrapping [5] and polynomial surface fitting on static tissue for background phase correction.

Both types of perfusion during ECC were conducted using similar volumetric inflow rates, with only minor variations between individual measurements. In the ascending aorta, significant differences in volume flow rates were noted between antegrade and retrograde perfusion, while antegrade perfusion and physiological perfusion yielded comparable results. In the biologically downstream segments of the aorta, including thoracic and abdominal areas, substantial differences in blood volume flow rates were observed among all three types of perfusion, with antegrade perfusion showing the highest volume flow rates. In the descending aorta, the volume flow rates for antegrade perfusion were three times higher than those for retrograde perfusion, while the value for physiological flow was intermediate between the two (Fig. 3). In the distal aorta, volume flow rates were similar for physiological and antegrade perfusion, whereas retrograde perfusion exhibited significantly higher rates. Conversely, in the supraaortic and visceral branches, no significant differences were found among the three types of perfusion.

Since EEC perfusion aims to replace cardiac function, it is preferable to achieve volume flow rates that are comparable to physiological conditions, even though pulsatility is absent. Evaluating perfusion conditions specific to the EEC scenario and comparing them to physiological conditions can provide valuable insights for developing optimal procedures for human applications. Using the triple VENC technique employed here, it was possible to accurately quantify different flow velocities, particularly in the inflow region of the cannula as well as in peripheral areas. As expected, due to the varying flow directions, differences in flow rates between antegrade and retrograde perfusion could be quantified. Interestingly, rather than following a strict pattern, differences between the two EEC methods and the physiological condition varied across different vascular regions. A significant challenge encountered was the segmentation of small peripheral vessels. For future studies, higher spatial resolution will be necessary to address this limitation.

Using a dedicated triple Venc approach for ECC and a navigator-based method for pseudo-dynamic physiological blood flow, different perfusion strategies could be systematically compared in a rabbit model. The presented methodology enables reliable evaluation of different ECC approaches in vivo, providing a robust foundation for future testing and optimization of new perfusion strategies intended for clinical application in humans.
Jonah SCHRAUDER (Göttingen, Germany), Anna Kathrin ASSMANN, Alexander ASSMANN, Tor Rasmus MEMHAVE, Amir MOUSSAVI, Susann BORETIUS
14:00 - 15:30 #47732 - PG385 Influence of hormonal contraception on cerebral perfusion.
PG385 Influence of hormonal contraception on cerebral perfusion.

Arterial Spin Labeling (ASL) is a non-invasive MRI technique widely used to measure cerebral perfusion. However, its application is often limited by substantial intra- and inter-subject variability, which complicates the differentiation between physiological and pathological changes [1]. Despite increasing interest in the female brain, the effects of hormonal contraception on cerebral perfusion and hemodynamics remain poorly understood. This study aims to address this gap by investigating the impact of hormonal contraception on cerebral perfusion (CBF) and arterial transit times (ATT) using ASL MR imaging.

MRI data in 9 women with a natural menstrual cycle (NC) and 15 women using hormonal contraception (HA, Desorelle 20) were obtained on a Siemens 3T Prisma Fit MRI scanner (64 channel head coil, UGent core facility Ghent Institute for functional and Metabolic Imaging (GIfMI)). Data were acquired at three (for NC group) and two (for HA group) timepoints during the menstrual cycle, for three cycles, resulting in nine datasets per volunteers. ASL was acquired using a multi-time point pulsed ASL (TR = 3500ms, labeling duration = 1.8s; post-labeling delay’s from 0.3s to 3.1s, increments 0.3s, 1 label-control pair), and processed using the Bayesian Inference for Arterial Labeling (BASIL) toolset [2] from FSL (distortion correction with field map, model with macrovascular component and spatial priors, voxelwise calibration). Regional CBF and ATT were quantified for nine brain regions based on the MNI152 atlas (caudate, cerebellum, frontal lobe, insula, occipital lobe, parietal lobe, putamen, temporal lobe, and thalamus). Additionally, blood samples were drawn to analyze concentration of sex hormones (estradiol (E2), progesterone (Prog), follicle stimulating (FSH), and luteinizing hormone (LH)). rCBF, ATT and sex hormones of both groups were compared using a Mann-Whitney test with a False Discovery Rate correction and the significance level of alpha = 0.05.

A significant lower level of LH (mean difference = -4.45 U/L, p<0.001), FSH (mean difference = -2.25 U/L, p-value < 0.05), E2 (mean difference = -45.40 ng/L, p-value < 0.001) and Prog (mean difference = -0.25 μg/L, p<0.001) was measured in the women using contraception compared to the women wih a natural menstrual cycle. Significantly higher perfusion in HA compared to NC was measured in all regions except the cerebellum, with differences ranging from 1.25 ml/100g/min (temporal lobe) to 14.09 ml/100g/min (thalamus) (Figure 1). Additionally, in HA, compared to NC, a significant higher ATT was measured in the cerebellum (mean difference = 0.031s, p<0.001), and lower in the frontal (mean difference = -0.019s, p<0.01) and parietal lobe (mean difference = -0.014s, p<0.05) and the thalamus (mean difference = -0.035 ml/100g/min, p<0.001)(Figure 2). No statistical significant differences in ATT were found in the other regions.

This study highlights the impact of hormonal contraception on cerebral perfusion and arterial transit time. HA users showed higher CBF in most brain regions, higher ATT in the cerebellum and lower in the frontal, parietal lobes, and thalamus. These findings emphasize the need to consider hormonal status in neuroimaging studies, as HA can influence CBF and ATT. Limitations include a small sample size, and future research should explore larger cohorts and various contraceptives.

Hormonal contraception use significantly impacts cerebral perfusion and ATT measurements, highlighting the need to account for hormonal status in perfusion imaging studies. These results contribute to a better understanding ofthe influence of sex hormones on cerebral hemodynamics.
Soetkin BEUN (Ghent, Belgium), Ceulemans JULIE, Thomas OKELL, Eric ACHTEN, Joana PINTO, Patricia CLEMENT
14:00 - 15:30 #47802 - PG386 Enhanced hand angiography without contrast agents: One-slab, PPU-triggered QISS with adapted echo times.
PG386 Enhanced hand angiography without contrast agents: One-slab, PPU-triggered QISS with adapted echo times.

Since its introduction about 15 years ago, Quiescent-Interval Single-Shot (QISS)1,2,3 has been widely used for peripheral MR angiography, e.g. for peripheral arterial disease (PAD)2,3. In a recent publication4, QISS was used to acquire high resolution hand angiograms using ECG triggering at 1.5 T. However, strenuous pre-scan preparation steps, prominent background signal and the presence of artefacts such as discontinuity and susceptibility were reported. Here, we ventured to address these issues by using a one-slab excitation, Peripheral Pulse Unit (PPU) out-of-phase5 imaging on a latest generation, high performance 3T system.

Healthy volunteers were scanned in prone position with one hand extended above the head (“superman” position) using a product 2D QISS sequence at 3 T with one or several “slab” adjustment volumes (120° slice selective excitation, Cartesian True-FISP (Trufi) readout, venous saturation band = 70 mm; MAGNETOM Cima.X, max. gradients / slew rate 200 mT/m(s), 16-ch. Hand-wrist coil, Siemens Healthineers). Two echo times, TE = 2.42 ms (in phase), and TE = 3.5 ms (out-of-phase) were chosen by setting the receiver bandwidth (BW) to 651 Hz/Px (protocol 1), 347 Hz/Px (protocol 2, full echo) and 195 Hz/Px (protocol 3, 2/3 partial echo), respectively. Note that the sequence didn’t allow for setting the TE separately yet. Other parameters were: Quiscent-interval TI = 345 ms, Peripheral Pulse Unit (PPU) triggering, Single 3D slab reconstruction, TR = 687.61ms, interpolated voxel size = 0.2x0.2x1.0 mm3, matrix size= 640X416p, 256 slices, FOV = 165x108 mm2. Contrast to Noise Ratio (CNR) was estimated in three arteries: Ulnar, Radial, Proper Palmar Digital arteries in three distinct imaging slices using: CNR=(S1−S2)/σ S1 is the mean signal of a region of interest (ROI) in an artery in a single slice, S2 is the mean signal of a ROI of background tissue BT, σ is the standard deviation of the noise outside the object.

Using a single slab averted all block-like artefacts reported before (Fig. 1), 4 and resulted in good quality arterial QISS angiograms in short scan times of 3:36 min (Fig. 2). Using the PPU instead of the ECG for triggering did not deteriorate the apparent image quality; the arteries of the hand were well visualized with no additional artefacts. Using the same out-of-phase-TE, but increasing the bandwidth, reduced the tissue signal by signal (BT, Protocol 3) / signal (BT, Protocol 2) = 1.2 (Fig. 4). Of course, these results are affected by the echo time and bandwidth – see discussion. For all protocols, the maximum intensity projections (MIP) of the data exhibited similar arterial structures (Fig. 2). Susceptibility artefacts manifested as smearing of the arteries more prominently at lower bandwidths, discontinuities were present in one location at BW = 195 (Fig 2c). The CNR has increased for smaller bandwidths and for out-of-phase TE across all three arteries (Fig. 3), except for the radial artery in volunteer 2 (in color red Fig. 3).

Using a single instead of multiple adjustment slabs resulted in MIPs free of the block artefact (Fig. 1), likely because more uniform adjustment parameters were used. PPU has provided good results for hand angiography, although previous studies1,2,4 deemed PPU to be inferior. The difference may be caused by faster PPU electronics of the system used. Setting TE to cause fat and water spins to be out-of-phase is an established method to reduce lipid signals (TE = 1.23 ms, 3.69 ms, 6,15 ms, 8.61 ms, …. at 3T). When we set TE close to the out-of-phase condition, the background tissue around the arteries is noticeably darker, indicating better suppression of the static tissue, and consequently, enhancing the subjectively observable contrast between the arteries and the static tissue (Fig.1b and 1c, CNR in Fig. 2). For all three arteries, CNR was higher for TE= 3.4 ms/ BW = 195Hz/Px. This imaging protocol have yielded a near full visualization of the major hand arteries without requiring the lengthy pre-scan preparation set-up procedures (moisturizing hands, using clay mold)4. Of course, the receiver bandwidth has an effect on CNR, too. Higher bandwidths are associated with less signal and higher noise due to the higher sampling rate. This fact skews the comparison of CNR in favor of data with lower bandwidths (Fig. 3). On the other hand, lower bandwidths risk exacerbating susceptibility artifacts (Fig. 2). We are currently implementing a sequence that allows for setting TE individually. A high bandwidth, out-of-phase TE sequence appears to be ideal to minimize artifacts and maximize static tissue suppression.

The developed protocols, relying on one-slab-adjustments, PPU triggering and out-of-phase imaging, provided high quality angiograms of the human hand without contrast agents, and averted the issues reported before. More experiments are needed to isolate the individual effects.
Mayar FAHED (Kiel, Germany), Mona SALEHI RAVESH, Mariya PRAVDIVTSEVA, Monika HUHNDORF, Lynn Johann FROHWEIN, Robert R. EDELMAN, Marcus BOTH, Olav JANSEN, Jan-Bernd HÖVENER
14:00 - 15:30 #47686 - PG387 Effect of catheter ablation of atrial fibrillation on the renal blood flow measured by phase-contrast MRI - A pilot study.
PG387 Effect of catheter ablation of atrial fibrillation on the renal blood flow measured by phase-contrast MRI - A pilot study.

It is known that atrial fibrillation (AF) and chronic kidney disease (CKD) are common conditions which are closely related and usually coexist. Each disease influences progression of the other. However, it is not well understood yet how AF affects renal blood flow. 2D phase-contrast magnetic resonance imaging (2D PC MRI) is a non-invasive method capable providing the functional information about renal artery blood flow (RABF) and quantify it. Therefore, we utilized 2D PC MRI to compare RABF in the same patient during AF and consequently in sinus rhythm (SR) after catheter ablation (CA) in general anaesthesia.

This pilot study enrolled 7 patients (age: 62 ± 13 years, F/M: 2/5) who underwent CA for AF in general anaesthesia. All subjects provided written informed consent with the participation in the study. The study was conducted in compliance with the principles of the Declaration of Helsinki and with the approval of local ethics committee. All the patients underwent MR examination 24 hours before CA and consequently 24 hours after CA. The examination was performed in the supine position during breath-hold exhalation using 3T VIDA MR system (Siemens Healthineers, Germany) equipped with 30-channel surface coil and 32-channel spine coil. MRI protocol included T2 TruFI sequences in 3 orthogonal orientations (thickness: 3 mm) for renal anatomy visualization and 2 sets of 2D PC MR sequences (1. FOV 250x250 mm, flow-encoded velocity range (VENC) = 100 cm/s, TR/TE = 40.80/2.82 ms; 2. FOV 200x200 mm, VENC = 80 cm/s, TR/TE = 40.64/2.99 ms; NA = 1, flip angle = 20°). The flow data were obtained in a plane perpendicular to the right and left renal artery (RA), approximately 10 mm from the ostium. 2D PC MR measurements were repeated 2 or 3 times to precise RABF quantification. Retrospective ECG or pulse triggering with RR-based arrhythmia rejection was used. All the data sets were normally distributed. Paired t-tests were used for statistic evaluation of the changes in patients before and after CA. P-value < 0.05 was considered statistically significant.

All patients presented with normal SR after CA. No significant differences in renal function parameters were found between AF and SR (creatinine before CA: 94±22 µmol/l, after CA: 97±25 µmol/l; cystatin C before CA: 1.1±0.3 mg/l, after CA: 1.1±0.3 mg/l). Paired t-test showed significantly decreased cross-section area (ROIs) of both renal arteries, increased RABF and increased renal blood peak velocity in each patient with SR after CA compared to the state in AF before CA (Figure 1, Table 1).

2D MR PC measurements were repeated 2 or 3 times for each FOV and VENC assessment to precise selection of RA cross-section area. Considering the size of the RA caliber and the realistically achievable spatial resolution when measuring RABF, it was not possible to reliably use automatic ROI delineation. RA ROIs needed to be selected manually which increases the probability of bias selection. The relative error for all evaluated parameters ranged from 10 – 20 %. Although the difference in RA cross-section areas before and after CA may have been biased by both ROIs selection error and renal artery wall pulsatility, neither RABF nor renal blood peak velocity can be influenced by this difference.

Restoration of SR following CA of AF is associated with an increased renal blood peak velocity and higher renal blood flow. These preliminary results require further investigation and verification in future studies. Acknowledgements This study was supported by the project National Institute for Research of Metabolic and Cardiovascular Diseases (Programme EXCELES, Project No. LX22NPO5104) – Funded by the European Union – Next Generation EU. This work was also funded by the project (Ministry of Health, Czech Republic) for development of research organization 00023001 (IKEM, Prague, Czech Republic) – Institutional support.
Dita PAJUELO (Prague, Czech Republic), Predrag STOJADINOVIĆ, Monika DEZORTOVÁ, Milan HÁJEK, Josef KAUTZNER, Jaroslav TINTĚRA
14:00 - 15:30 #46604 - PG388 Characterising high-risk carotid plaques and endothelial (dys)function using non-contrast enhanced MRI.
PG388 Characterising high-risk carotid plaques and endothelial (dys)function using non-contrast enhanced MRI.

Carotid atherosclerosis remains a major risk factor for stroke in western countries[1]. While clinical management typically depends on stenosis severity, stenosis alone often fails to predict stroke risk accurately [2,3]. Treatment decision is currently based on the severity of stenosis, even though, clinical trials have shown that stenosis alone may not reliably predict cardiovascular risk in individual patients. Plaque composition and compromised endothelial function (in response to vasodilating stressors) are crucial in plaque development and the occurrence of cardiovascular events[4–6]. Consequently, an imaging method to detect features of high-risk plaque and luminal stenosis simultaneously would have added value in patient diagnosis. The recently proposed BOOST (Bright- and Black-blOOd phase-SensiTive) sequence offers simultaneous, co-registered, contrast-free bright- and black-blood imaging in a single scan, enabling both lumen and vessel wall visualisation[7]. BOOST has been previously used at 1.5T to identify high-risk coronary plaque features (thrombus and intraplaque haemorrhage)[8,9] and for anatomical assessment of the aorta[10]. However, the application of BOOST at 3T for 3D high-resolution imaging of carotid plaques has not been explored. Here, we optimised the iT2prep-BOOST sequence for carotid vessel wall imaging at a 3T scanner. This study was designed to selectively identify patients with high-risk carotid atherosclerosis by detecting compositional features of high-risk plaques and assessing endothelial (dys)function in a fast, high-resolution, contrast-free MRI session.

Building on our previous work [7], we have implemented an accelerated, 3D free-breathing, motion-corrected iT2 prep-BOOST research sequence on a 3T MR system (MAGNETOM Vida, Siemens Healthineers AG, Forchheim, Germany) for carotid artery imaging (Fig. 1). iT2 prep-BOOST allows for simultaneous bright and dark-blood imaging Images were acquired using a 64-channel head and neck matrix coil (Head/Neck 64, Siemens Healthcare) in 4 healthy subjects (female; mean age 34±14) with cardiac synchronisation via peripheral pulse sensor unit to optimise the acquisition parameters (data not shown). Patients undergoing carotid endarterectomy (CEA) (n=6) were recruited (Fig.2A). The iT2 prep-BOOST sequence was used for carotid plaque imaging at high resolution (0.9 x 0.9mm) and speed (~6 min). Endothelial (dys)function was measured using a phase-contrast MRI protocol before and 120 seconds after a cold-pressor test (CPT). Plaque-to-muscle ratio (PMR=SI plaque/SI reference muscle) using the black-blood images and changes in vessel area and blood flow were analysed. Tissue was collected postoperatively to validate the imaging data.

Results of the proposed simultaneous lumen and vessel wall BOOST sequence are shown for three patients. MR angiography and examples of bright and black-blood images acquired with iT2 prep-BOOST, show excellent delineation of the carotid artery lumen and vessel wall in all patients (Fig. 2B). The PMR measured on MRI was higher in plaques presenting with intraplaque haemorrhage as verified by en face tissue inspection (Fig. 2C). Assessment of endothelial vasomotor response to CPT showed vasocontraction in all three cases (negative % change in area) and reduction or no change in blood flow (negative or close to zero).

This study is the first to demonstrate the feasibility of a rapid, high-resolution MRI approach for simultaneous assessment of high-risk features in carotid plaques and endothelial function under 20 minutes. The iT2-prep-BOOST sequence provided clear delineation of the arterial lumen and vessel wall, and showed a higher plaque-to-muscle ratio in high-risk plaques with intraplaque haemorrhage. Cold pressor testing showed endothelial dysfunction characterised by no changes or reduced vessel area and blood flow at sites of plaque. This integrated approach offers a time-efficient method enabling the assessment of both plaque composition and endothelial cell function in a single MRI session, with the potential to improve risk stratification of carotid atherosclerosis.

In this translational study, we demonstrate for the first time that in vivo imaging of both high-risk plaque features and endothelial (dys)function can be assessed in a single MRI session at high resolution and in under 20 minutes. Such a strategy that provides both anatomical and functional assessment of the plaque may enable better stratification of atherosclerosis and selection of patients at risk.
Nadia CHAHER (London, United Kingdom), Darshan BAKRI, Karl P KUNZE, Ivan KOKHANOVSKYI, Claudia PRIETO, René M BOTNAR, Prakash SAHA, Alkystis PHINIKARIDOU
14:00 - 15:30 #46705 - PG389 Predictors of Cerebral Microbleeds in CADASIL: Two analytical approaches.
PG389 Predictors of Cerebral Microbleeds in CADASIL: Two analytical approaches.

Cerebral Autosomal Dominant Arteriopathy with Subcortical Infarcts and Leukoencephalopathy (CADASIL) is the most frequent hereditary cerebral small vessel disease (SVD) worldwide. The condition caused by characteristic mutations of the NOTCH3 gene leads to recurrent stroke, motor impairment, gait disturbances and cognitive decline [1]. Common magnetic resonance imaging (MRI) findings include white matter hyperintensities on T2-weighted images, lacunes and brain atrophy. Cerebral microbleeds (CMBs) described as small hypointense areas related to focal iron deposits on MRI sequences are observed in about one third of patients [2]. The predictors of CMBs in CADASIL are unclear, as the exact cause of their emergence and growing number remain poorly understood. Analyzing CMBs is however challenging for two main reasons: 1) CMB count represents a discrete and typically zero-inflated variable with a long-tailed distribution [3]; 2) CMB counting becomes less reliable when their number increases (see colleague submitted abstract [4]). In the present study, we used a quantitative and semi-quantitative approach to assess CMBs in CADASIL and sought to compare differences between CMB predictors obtained using two different analytical strategies.

We applied a two-step modeling framework to data obtained from 517 CADASIL patients recruited at the National Referral Center in France. Key variables were considered in addition to CMBs for analysis such as age, sex, vascular risk factors, the NOTCH3 mutation location, and key biological and neuroimaging information. In the first approach, the presence of CMBs was modeled using binary logistic regression (Logit) and thereafter CMB count (≥1) using a truncated negative binomial regression (NB). In the second approach, a binary logistic regression was also used at first, and thereafter an ordinal logistic regression (OLogit) based on four number categories. Continuous variables were standardized. Missing data were handled via mean imputation (imaging results) or via multiple imputation by chained equations (other data). Covariates were first screened for multicollinearity. A univariate analysis was then used to exclude those unlikely related to CMBs (p > 0.3). Age, hypertension, other neuroimaging measures and mutation location were retained in all models. The final model predictors were selected using stepAIC (OLogit) or LASSO (Logit and NB). When possible, model performance was assessed using a 70/30 train-test split. Model fit was evaluated with log-likelihood, Akaike Information Criterion (AIC), and Bayesian Information Criterion (BIC), while predictive performance was assessed using confusion matrices and mean absolute error (MAE). All analyses were conducted in R Statistical Software version 4.4.3 [5].

For both approaches, the Logit model identified age, hypertension, the number of lacunes, and diastolic blood pressure as predictors of CMB occurrence (Table 1). Using quantitative data, the NB model showed that brain parenchymal fraction, number of lacunes, MRI sequence, hemoglobin level and both systolic and diastolic blood pressure predicted the number of CMBs (Table 2). In contrast, when CMB were considered by number categories, the OLogit model identified the number of lacunes as the unique predictor (Table 3). In terms of predictive performance, the Logit model demonstrated strong classification ability, with high sensitivity and a robust F1 score, though it tended to overpredict the presence of CMB. The NB model exhibited moderate predictive accuracy, underestimating higher CMB counts, likely due to challenges in modeling overdispersion. The OLogit model showed limited capability in correctly classifying higher CMB categories.

Our two analytical approaches yield different sets of CMBs predictors in CADASIL. The NB and OLogit models are not comparable. Choosing a quantitative or semi-quantitative measures of CMBs leading to different analytical procedures appears thus crucial and should align with the exact underlying biological question. If the goal is to identify all predictors of CMBs, the first approach should be adopted despite the lack of precision in higher counts. If the goal is to obtain an accurate prediction, the second approach is preferable at the cost of losing information. Limitations of this study include the moderate sample size and CMB detection measures. Additional analysis of longitudinal data should help improve predicting CMB in CADASIL.

The results of this study further illustrate that the decision to quantify a biomarker such as CMBs should be based primarily on the ultimate objectives sought. Analysis of such data leads to a trade-off between the desired predictive performance, the complexity of the model to be developed, and the type of sample to be analyzed. In the future, enriching the information with longitudinal MRI data should further improve the prediction of CMBs in CADASIL.
Laura TINTORE CARBONELL, Jessica LEBENBERG (Paris), Louis LAMBERT, Mohamed SAICHI, Hugues CHABRIAT
14:00 - 15:30 #46908 - PG390 A reliability analysis for cerebral microbleeds counting in CADASIL.
PG390 A reliability analysis for cerebral microbleeds counting in CADASIL.

Cerebral Autosomal Dominant Arteriopathy with Subcortical Infarcts and Leukoencephalopathy (CADASIL) is a monogenic cerebral small vessel disease (cSVD) caused by stereotyped cysteine mutations of the NOTCH3 gene encoding a receptor of smooth muscle cells and pericytes of arterioles and capillaries. This condition may lead to stroke, motor impairment, gait disturbances and cognitive decline [1]. On cerebral MRI, several MRI markers are observed during the disease course, including cerebral microbleeds (CMBs). CMBs are small hypointense dots on T2* and SWI sequences related to focal iron deposits (see Fig1). They are observed in 1/3 of patients [2]. Because of the higher sensitivity of SWI, the number of CMBs may be found higher than on T2*. As the individual identification of CMBs may be tedious both visually and quantitatively, some researchers labelled CMBs as ‘certain’ or ‘uncertain’, and others proposed to categorize their number in different classes [3–7]. As the method used to analyze CMBs may largely impact the identification of the potential predictors of such lesions (see companion submitted abstract [8]), we here assessed how the number of CMBs, the method used for counting and the type of MRI sequence can influence the observer agreement in repeated and independent assessments.

Thirty T2* and thirty SWI MRI were acquired respectively on a 1.5T GE scanner or on a 3T SIEMENS machine in CADASIL patients included in the National French referral center for rare vascular diseases of the eyes and brain (https://www.cervco.fr). On each scan, CMBs were visually identified twice by a trained scientist (Rater1 performed Reviews 1 and 2), and once by an expert neurologist (Rater2). Counts were then transformed in CMBs categories according to the CADAMRIT instrument (CADAMRITlike items) [7]. The continuous and categorial agreements were evaluated with the ICC3 and weighted kappa scores respectively [9,10]. A linear regression and a category-based analysis were performed to evaluate the influence of the burden of CMBs onto the results. For each test, the MRI sequence was considered as a factor that could potentially influence the results.

In the T2* sub-dataset, 63% of individuals were women, the mean age was 60.22 +/- 9.04 years. In the SWI sub-dataset, 50% of individuals were women, the mean age was 58.85 +/- 7.84 years. When CMBs were assessed as a continuous variable on T2*, the ICC3 reached 0.95 and 0.87 for the intra- and inter-rater assessments respectively. On SWI, the same parameters reached 0.87 and 0.65 for the intra- and inter-rater evaluations respectively (p always <0.001). Linear regression analysis between the absolute difference of counting and the mean of values, showed that the intra- and inter-rater agreements decreased significantly with the number of CMBs, especially when using the SWI sequence. For the intra-examination study, the R2 was 0.732, and the interaction between the mean value and the MRI sequence was significant with p = 0.032. For the inter-rater study, the R2 was 0.616, and the interaction between the mean value and the MRI sequence was significant with p < 0.0001. Results are detailled in Fig2. The absolute difference between CMBs counting against the mean count are displayed on Fig3. For the categorical classification of CMBs on T2*, the weighted-Kappa reached 0.97 and 0.74 for the intra- and inter-rater examinations respectively. For CMBs counting on SWI, these scores reached 0.94 and 0.83 for the intra- and inter-studies respectively. All tests were statistically significant (p<0.001). Because of the limited sample size, a category-based analysis could not be evaluated. The heatmaps presented in Fig4 showed a high intra-rater agreement. More discrepancies were found for the inter-rater, especially for T2* data.

The results of this study showed that, globally, the intra- and inter-observer agreements of the number of CMBs on T2* and on SWI were always relatively high, both for continuous and categorial countings. They also showed that the agreement for continuous countings decreased significantly with the number of lesions to be detected. As the SWI sequence is very sensitive to iron deposits, such an effect appeared larger for SWI than for T2*images. Because of the limited sample size, the potential effects of evaluation by number categories on inter or intra-rater agreement was not assessed.

Our results emphasized that the reliability of CMBs identification mainly depends on the burden of lesions to be detected. Future analysis will investigate whether an automated segmentation may improve the counting reliability [6]. Pending further in-depth studies, we suggest a cautious interpretation of results including high number of CMBs [8].
Jessica LEBENBERG (Paris), Mohamed SAICHI, Laura TINTORE CARBONELL, Louis LAMBERT, Hugues CHABRIAT
14:00 - 15:30 #47735 - PG391 Longitudinal 3D-DCE MRI Evaluation of Placental Perfusion in a Rat Model of Reduced Uterine Perfusion Pressure (RUPP).
PG391 Longitudinal 3D-DCE MRI Evaluation of Placental Perfusion in a Rat Model of Reduced Uterine Perfusion Pressure (RUPP).

The placenta is a dynamic organ essential for supporting fetal growth and development, functioning as the critical interface for maternal-fetal exchange of nutrients, gases, and signaling molecules. Its normal development and function are crucial for a healthy pregnancy, yet can be compromised in conditions such as preeclampsia (PE) and fetal growth restriction (FGR), both of which are major contributors to perinatal morbidity and mortality (1). One commonly used preclinical model to study these conditions is the Reduced Uterine Perfusion Pressure (RUPP) model, which mimics key features of PE by surgically decreasing uterine blood flow (2). In this study, we use longitudinal Dynamic Contrast-Enhanced (DCE) MRI to non-invasively assess changes in placental perfusion across multiple gestational days in rats subjected to RUPP compared to normal pregnancies. This approach enables evaluation of both the acute effects immediately following the surgery and the potential compensatory adaptations that occur later in gestation.

Animal experiment: Our study used pregnant Sprague Dawley rats, divided into two groups: normal pregnancies (NP) (n=8) and RUPP pregnancies (n=10). The RUPP model was established by clipping the ovarian arteries and abdominal aorta to reduce uterine blood flow. Each animal underwent three MRI sessions starting at gestational day (GD) 14, immediately after surgery, followed by sessions on GD15 and on either GD16 or GD18. After the final MRI session, animals were sacrificed. 3D-DCE MRI: To assess perfusion, DCE MRI was conducted using a 7T scanner (MR Solutions, Guildford, UK), utilizing a 3D RF-spoiled gradient-echo sequence with the following parameters: TR/TE = 8/2 ms, flip angle = 25°, FOV = 60 x 60 x 60 mm³, matrix = 128 x 96 x 96. K-space filling was done using a pseudo-radial scheme in the two phase-encoding directions and a tiny golden-angle increment of 16.95 degrees between successive spokes. The pseudo-radial acquisition was repeated for 11 minutes. Subsequently, data was reconstructed with a temporal resolution of 22 seconds using a compressed sensing reconstruction algorithm with a total variation regularization in the temporal domain.

Semi-quantitative analysis of the DCE MRI signal intensity-time curves was performed using three perfusion parameters: area under the curve (AUC), peak enhancement, and time to peak (TTP). On GD14, placental perfusion was significantly impaired in the RUPP group compared to the NP group. Specifically, AUC was markedly reduced (RUPP: 52,000 ± 7,200 vs. NP: 70,500 ± 6,800; p < 0.001), peak enhancement values were lower (RUPP: 102 ± 15 vs. NP: 145 ± 10; p < 0.001), and TTP was significantly delayed (RUPP: 288 ± 21 ms vs. NP: 195 ± 18 ms; p < 0.01) At subsequent time points, perfusion metrics in the RUPP group showed progressive recovery. By GD18, AUC and peak enhancement values in RUPP placentas were comparable to those observed in the NP group (AUC: RUPP: 68,000 ± 8,200 vs. NP: 67,500 ± 7,400; Peak: RUPP: 140 ± 12 vs. NP: 138 ± 11). TTP differences also diminished by GD18.

The results demonstrate that placental perfusion was significantly reduced in the RUPP group compared to the normal pregnant group at the earliest post-surgical time point. This reduction was evident across all measured parameters, including AUC, peak enhancement, and TTP, indicating impaired placental blood flow following the surgical intervention. At later gestational days, the perfusion parameters in the RUPP group showed progressive changes. By the final time point, values for AUC and peak enhancement were similar between the RUPP and control groups, and the initial delay in TTP had largely resolved.

This study highlights the dynamic adaptive capacity of the placenta under RUPP procedure. Initial findings at GD14 showed significantly lower perfusion parameters in the RUPP compared to normal pregnancies. However, improvement by GD16 and GD18 suggests adaptive response that restore function over time. This result underscores the limited critical intervention window in the RUPP animal model and it provides insights into placental resilience and adaptation.
Fatimah AL DARWISH (Amsterdam, The Netherlands), Caren VAN KAMMEN, Lindy ALLES, Fieke TERSTAPPEN, Caren VAN KAMMEN, Raymond SCHIFFELERS, Titia LELY, Gustav STRIJKERS, Bram COOLEN
14:00 - 15:30 #47871 - PG392 MACHINE LEARNING-BASED CLASSIFICATION OF NEURO-BEHCET'S SYNDROME USING DIFFUSION TENSOR IMAGING EIGENVALUE METRICS.
PG392 MACHINE LEARNING-BASED CLASSIFICATION OF NEURO-BEHCET'S SYNDROME USING DIFFUSION TENSOR IMAGING EIGENVALUE METRICS.

Neuro-Behçet’s syndrome (NBS) is the neurological form of Behçet’s disease. Machine learning (ML) and artificial intelligence (AI) are increasingly used in medical imaging to enhance diagnosis and prediction, particularly in radiology. MRI provides both traditional and advanced biomarkers—such as lesion characteristics and diffusion-based metrics—that help quantify brain changes. These biomarkers support predictive modeling even in rare conditions like NBS. Combining multimodal imaging with ML offers potential for personalized prognosis. Most research compares NBS patients to BS patients, with limited direct comparisons to healthy controls. A recent 2024 study [9] analyzed DTI data from 12 NBS patients and healthy controls, highlighting WM differences. This current study is notable for its relatively large NBS cohort from Türkiye, focusing on WM abnormalities using diffusion anisotropy indices and applying ML to identify key DTI metrics for accurately distinguishing pathological from healthy tissue.

Data were collected as a part of YOK 50006 "ML Based Differentiation of NBS with multi contrast MRI" project. project. This IRB approved study involved 14 NBS patients and 38 healthy controls, excluding one patient with a large frontal lesion. High-resolution T2-weighted MRI and diffusion tensor imaging (DTI) with 20 gradients were acquired. Three eigenvalue maps (λ₁, λ₂, λ₃) were generated. White matter (WM) masks were semi-automatically segmented from T2-weighted images using MIPAV’s level set method, starting at the axial slice where lateral ventricles appeared to reduce non-WM inclusion. T2W and B0 images were skull-stripped, bias-corrected, and co-registered via affine transformations using ANTS, with WM masks transformed accordingly and binarized. WM masks were semi-automatically segmented from T2-weighted brain MRIs using MIPAV’s level set method. Volumes of Interest (VOIs) were selected for both NBS and control groups, beginning segmentation at the axial slice where the lateral ventricles first appeared. This approach minimized non-WM inclusion, thereby reducing errors in diffusion tensor analysis. Voxel-wise WM diffusion indices—including λ₁, λ₂, λ₃, ADC, RD, FA, and RA—and their means were calculated. Min-max normalization was applied to histogram-based features (30 bins) of these variables to ensure comparability. These features served as inputs for classification. ML models were trained and tested using MATLAB’s toolboxes with leave-one-out cross-validation, evaluating features alone and in combination, with and without PCA (set to 5 components and 95% variance explained). ANOVA guided feature selection. Model performance was assessed via accuracy and ROC curves.

The study found that λ₁ and λ₂ was the most sensitive markers. ADC’s importance is driven by λ₁ and λ₂, while RD is influenced by λ₃, which is less distinct. FA and RA showed no significance, indicating that raw diffusivity metrics better detect WM abnormalities in NBS. Classification results demonstrated that λ₂, λ₃, and ADC achieved the highest accuracies, frequently exceeding 90%, with top performances reaching 98.08% for ADC (e.g., Fine Tree classifier). Quadratic SVM and Neural Networks also showed strong results, with accuracies up to 96.15%–100% after PCA application. PCA generally improved classification accuracy by 2–5%. In contrast, FA and RA consistently yielded lower accuracies, typically below 80%. These findings underscore λ₁, λ₂, λ₃, and ADC as the most sensitive and discriminative metrics for differentiating NBS patients from healthy controls. The 100% accuracy of the best model was shown in Figure 4.

The analysis revealed that traditional metrics (FA, RA) lacked significance for NBS, whereas raw eigenvalue features particularly ADC were highly effective. ADC alone reached up to 100% accuracy with Linear SVM and neural networks. Combining ADC with other metrics, especially using PCA, further enhanced performance. Ensemble methods, SVMs, and neural networks consistently showed strong results, with Linear SVM notably efficient. Despite some model instabilities, ADC proved crucial for accurate WM integrity classification and clinical application.

The analysis showed that traditional metrics like FA and RA were not significant for NBS, while raw eigenvalue features—especially ADC—were highly effective. ADC alone achieved up to 100% accuracy with models like Linear SVM and neural networks. Combining ADC with other metrics improved performance, especially with PCA. Ensemble methods, SVMs, and neural networks consistently performed well, with Linear SVM being notably efficient. Some models failed due to instability, but overall, ADC proved central for robust WM integrity classification and clinical potential. Statistical analysis reveals group differences, but lacks predictive power. ML enables individual-level classification by modeling multiple features, especially in high-dimensional medical imaging data like DTI.
Yıldız TUZUN (Türkiye, Turkey), Hamit Alp COMERT, Irem CEVIKCAN, Merve BAYER, Adeola ADEREMI, Abdullah ARCAN, Ugur UYGUNOGLU, Alp DINÇER, Aksel SIVA, Alpay OZCAN
14:00 - 15:30 #47722 - PG393 Mood induction by reliving memories – impact on mood state and cerebral perfusion.
PG393 Mood induction by reliving memories – impact on mood state and cerebral perfusion.

Arterial Spin Labeling (ASL) perfusion MRI is a promising tool for detecting early biomarkers of neurodegenerative and psychiatric diseases [1]. However, significant physiological variability in cerebral blood flow (CBF) complicates its clinical use. Changes in mood may contribute to this variability and confound the interpretation of CBF measurements. This study evaluates the impact of mood on CBF using autobiographical recall with guided imagery during ASL scans.

ASL data in 48 healthy young adults (50% women, 18–29 years) were acquired during positive, negative, and neutral mood conditions, using a within-subject design (Figure 1). Mood was induced through guided imagery using autobiographical recall, trained before the MRI session. Perfusion was measured using a pseudo-continuous ASL with single-shot 3D-GRASE readout (labeling duration 1.5s, PLD 2s) on a single Siemens 3T Trio scanner at the UGent core facility GIfMI. ASL was processed using ExploreASL [2] and CBF was quantified for total gray matter (GM), anterior cingulate cortex (ACC), posterior cingulate cortex (PCC), hippocampus, anterior and posterior parahippocampal gyrus, amygdala, medial (pre)frontal cortex (mPFC) and putamen. Using linear mixed-effects models (LMM), the validity of the mood induction procedure, the GM CBF and spatial COV, and normalized regional CBF were tested for all regions. Multiple comparisons were corrected using the false discovery rate correction (FDR), and the significance level was set at alpha = 0.05.

Mood induction effectively altered self-reported happiness and sadness, with significant task-valence interactions for happiness (F(2,811)=166.38, p<0.001) and sadness (F(2,810.01)=217.67, p<0.001). A significantly higher total GM CBF for positive MIPs (mean(SE) = 0.8 (+-0.3) ml/100g/min) compared to negative MIPs (t(811)=2.62,p=0.025), but not neutral MIPs (t(811)=2.25,p=0.063) was detected. Spatial COV results showed no significant effects (F′s<2.31,p′s>0.099). For regional perfusion, no significant main effect of mood state was detected (F’s < 1.04, p’s > 0.247). Task effects (during mood induction versus during resting-state) were observed for PCC (F(1,811)=4.77,p=0.029) and mPFC (F(1,811)=5.18,p=0.023), though these became non-significant after correcting for multiple comparisons.

Mood changes were successfully induced during the MRI session. Positive mood induction significantly increased total GM perfusion compared to negative mood, while this effect was not detected for regional perfusion. However, compared to other perfusion modifiers such as age, exercise and sleep [3], these effects are relatively small.

In conclusion, a positive mood appears to significantly influence total GM perfusion. Albeit small effect size, mood state may influence cerebral blood flow and should be considered in future perfusion studies.
Patricia CLEMENT (Ghent, Belgium), Naomi VANLESSEN, Stefanie DE SMET, Laura VANSTEENKISTE, Soetkin BEUN, Pieter VANDEMAELE, Stephanie BOGAERT, Henk-Jan MUTSAERTS, Gilles POURTOIS, Eric ACHTEN
14:00 - 15:30 #47730 - PG394 Influence of pulmonary transit time methods on discrimination between amyloidosis and normal heart.
PG394 Influence of pulmonary transit time methods on discrimination between amyloidosis and normal heart.

Pulmonary transit time (pTT) determined by cardiac magnetic resonance (CMR) has been shown to be impaired by various conditions such as heart failure [1], congenital heart disease [2] or surgical cardiac procedures [3]. Recently, pTT was also suggested as imaging predictor for cardiac involvement and prognosis in light-chain amyloidosis [4]. Frequently, pTT is determined from first-pass perfusion CMR as the time interval between the maxima of time-intensity curves in the right ventricle (RV) and left ventricle (LV). However, it has been suggested by Nelsson et al. [5] that the use of the center of gravity of the respective time-intensity curves might be more robust. It was the purpose of our study to compare the maximum-method and the center-of-gravity method with regard to discrimination between normal patients and patients with proven amyloidosis.

The study was approved by our local institutional review board. Patients (age > 18a, no contraindications for MRI) with proven amyloidosis and individuals without amyloidosis and no signs of cardiac impairment were included into this study. Subjects were investigated on a 1.5T MR scanner (MAGNETOM AvantoFit, Siemens, Germany). For pTT assessment, a first-pass perfusion sequence was applied, using a cardiac-gated single-shot 2D saturation recovery gradient echo sequence (true fast imaging with steady-state free precession - trueFISP); typical imaging parameters were as follows: repetition time/echo time: 2.2 ms/0.97 ms, saturation recovery time: 90 ms, flip angle: 50°, acquisition matrix: 128 × 82, field of view: 400 × 300 mm, bandwidth: 1370 Hz/pixel, slice thickness: 8 mm, parallel imaging mode: GRAPPA, and acceleration factor: 2. Image acquisition was started simultaneously with contrast media injection; a total of 60 images in one 4-chamber long-axis view as well as two short-axis views were acquired. Time-intensity curves were created with syngo.via software (VB80f, Siemens Healthineers) and circular regions of interest (ROI) were placed within the basal RV and LV blood pool on the first-pass perfusion 4-chamber long-axis view. Care was taken to avoid partial volume effects at the papillary muscles or myocardial wall. Average signal intensity within the ROI was plotted as a function of time, resulting in an indicator-dilution curve. Omitting recirculation, a gamma variate fit was applied to the data using the R Project for Statistical Computing 4.4.3 software (R Foundation for Statistical Computing). From the obtained fit parameters time to peak values (TTP) and time to center of gravity (CoG) values could easily be computed. pTT was then defined as the difference between the respective LV and RV values.

114 subjects were enrolled in this study, including 19 subjects, which were chosen as controls, without cardiac impairment and 89 patients with proven transthyretin amyloidosis (ATTR). Table 1 shows a summary of the obtained pTT values for heart-healthy subjects and ATTR amyloidosis patients for the different pTT methods. Wilcoxon rank sum test showed a significant difference between controls and patients with amyloidosis for pTT values of both methods (fig 1). ROC analysis resulted in similar pTT thresholds for both methods (9.55s for pTT(TTP) and 9.57s for pTT(CoG)). The area under the curve (AUC) for pTT(TTP) was 0.907 (95% CI: 0.849-0.965) with a specificity of 100% and a sensitivity of 71.9%. For pTT(CoG) the AUC was 0.668 (95% CI: 0.552 – 0.783) with a specificity of 84.2% and a sensitivity of 57.3%. As shown in figure 2, the difference between both ROC curves was highly significant (p < 0.001).

In this study pTT calculated by two different methods from first pass contrast enhanced CMR data were compared between controls and patients with proven ATTR amyloidosis. pTT(TTP) enabled a significantly better discrimination between the patient groups as compared to pTT(CoG). For pTT(CoG), variablity in contrast agent wash-out may lead to the observed decrease in discrimination between the patient groups.

pTT(TTP) obtained as difference between LV and RV TTP values were found to enable a significantly better discrimination between heart-healthy subjects and ATTR amyloidosis patients.
Christian KREMSER (Innsbruck, Austria), Philip LUNGENSCHMID, Felix TROGER, Maria UNGERICHT, Agnes MAYR
14:00 - 15:30 #47740 - PG395 Structural characterization of cardiac Purkinje fibers using optimized inhomogeneous Magnetization Transfer (ihMT) MRI and Histology.
PG395 Structural characterization of cardiac Purkinje fibers using optimized inhomogeneous Magnetization Transfer (ihMT) MRI and Histology.

The His-Purkinje system is implicated in the initiation and maintenance of ventricular fibrillation, which can lead to sudden cardiac death [1]. This conduction network is essential for ventricular activation but remains poorly characterized and structurally variable across species [2]. Inhomogeneous Magnetization Transfer (ihMT) MRI [3–5], sensitive to myelinated structures [6], has recently shown promise for imaging the cardiac conduction system, particularly Purkinje fibers [7–9]. This study aims to optimize ihMT parameters for PF visualization, and complement it by histological validation.

Experimental setup: A left ventricular sample (Fig.1-a), containing myocardium and free-running PF was obtained from a female sheep’s (51.1 kg, 9 y.o) heart and fixed in 4% formaldehyde containing 0.1% of gadoterate meglumine (0.5 mmol/mL; Dotarem, Guerbet, France). For MRI, the sample was placed in a syringe filled with Fluorinert (Sigma-Aldrich; Fig.1-a), heated to 33±1 °C using water bath and continuously monitored with a temperature probe (SA Instruments, NY). MR acquisition & post-processing: Experiments were conducted on a 9.4T/30cm (Bruker Biospin MRI, Ettlingen, Germany) with a cylindrical transmit coil (87-mm intern) coupled with a 4-channel phased-array reception coil. A 2D ihMT-prepared RARE sequence (Fig.1-b) was used with the following readout parameters: TE/TR/PF/#M0/#MTw/TA=20ms/3000ms/1.8/10/200/2h and res=0.25×0.25×1 mm3. IhMT ratios (ihMTR%) were calculated as: ihMTR=100×(M_sing-M_dual)/M_0 where Msing=MT++MT- and Mdual=MT±+MT∓. MT+ and MT- refer to the MT-weighted images acquired with positive frequency offset saturation and negative offset saturation, respectively and MT± and MT∓ refer to MT-weighted images acquired with dual frequency offset saturation. IhMTR maps were generated using the script: https://github.com/lsoustelle/ihmt_proc. A range of different MT saturation parameters (Table 1) were tested to find the optimized contrast defined as: Contrast=ihMTR_PF - ihMTR_myocardium where a custom-made python script was used to draw two ROIs manually in PF (Fig. 1c, Mask1, red) and in myocardium (Fig. 1c, Mask1 green) to calculate ihMTR mean±SD. Further analysis was done by separating PF into free-running (Fig. 1c, Mask2, red) part of the fiber and the insertion point (Fig. 1.c, Mask2, blue), the part that enters the myocardium. Histological analysis: After MR experiments, histological analysis was conducted to provide detailed insights into the tissue structure. After dehydration, sample was embedded in paraffin and sectioned at 6 μm. Tissue sections were stained with Picro-Sirius Red for structural identification: collagen fibers, myocytes, and adipocytes were red, yellow and white, respectively. The polarized light (PL) filter (analyzer-polarizer, Nikon) allowed for differentiation between collagen type I (in red and yellow) and collagen type III (in green) [10].

Figure 2 illustrates ihMTR values in the PF (red) and myocardium (green) across different experiments. In all acquisitions, ihMTR was consistently higher in PF compared to myocardium. The protocols with the highest contrasts (namely, Pr1=2±1.2%, Pr2=2.1±1.3%, and Pr3=2±1.2%) are highlighted in the figure (dashed lines), and their corresponding MT saturation parameters are listed in the table. ihMTR values across the three protocols consistently showed higher signal in the free-running region of the PF vs. the insertion point. In Pr1, the values were 9.4 ± 1.6% vs. 6.6 ± 1.8%; in Pr2, 11.0 ± 1.9% vs. 8.1 ± 1.2%; and in Pr3, 9.4 ± 1.8% vs. 6.9 ± 1.6% for free-running vs. insertion point. For comparison, myocardium ihMTR values were 7.2 ± 0.7% in Pr1, 8.6 ± 0.8% in Pr2, and 7.2 ± 0.7% in Pr3. Fig. 3a shows histological views of the same sample under standard and polarized light (PL), along with the ihMTR map from Pr1 (Fig. 3b). The fiber contains Purkinje cells, collagen (red), and adipocytes (white), with adipocytes mainly at the insertion point and collagen more abundant in the free-running region. Under PL, Col I (red/yellow) is more prevalent than Col III (green); Col III is slightly more expressed at the insertion point.

Testing different ihMT protocols on one sample identified those with highest fiber signal and myocardium contrast. IhMTR was higher in the free-running PF region, which showed more collagen and Purkinje cells. The insertion point had lower ihMTR, likely due to adipocytes. IhMT effectively detects microstructural differences in the Purkinje network linked to tissue composition.

The Purkinje network is a variable and understudied structure. IhMT offers contrast sensitive to its heterogeneous makeup, influenced by collagen and adipocytes. This study establishes a framework for fiber imaging and validates it histologically. Future work will apply this approach to additional ex-vivo samples to better characterize ihMT contrast.
Arash FORODIGHASEMABADI (Bordeaux), Evgenios N. KORNAROPOULOS, Marion CONSTANTIN, Lucas SOUSTELLE, Fanny VAILLANT, Jude LEURY, Richard WALTON, Olivier BERNUS, Bruno QUESSON, Olivier M. GIRARD, Guillaume DUHAMEL, Julie MAGAT
14:00 - 15:30 #47561 - PG396 MRI-Based Radiomics for Survival Prediction and Risk Assessment in Glioma Patients.
PG396 MRI-Based Radiomics for Survival Prediction and Risk Assessment in Glioma Patients.

Glioma is the most common and aggressive primary cancer of the central nervous system[1][2]. Despite recent advances in clinical practice, the detection of prognostic biomarkers still requires invasive, complex, and costly methods[3][4]. Therefore, the need for a simple, reliable, and easy-to-use predictive model arises. MRI is a noninvasive modality known for its superior soft tissue contrast, making it particularly useful for diagnosing brain pathologies, including glioma. Radiomics is a field within medical imaging that specializes in the analysis and extraction of quantitative parameters from medical images. Given these insights, radiomics features extracted from MR images can unveil hidden patterns that cannot be identified on other imaging modalities, serving as essential building blocks for the development of prognostic prediction models and treatment decision tools in cancers. The goal of this study is to construct and validate radiomics prediction models based on preoperative gadolinium-enhanced T1- and T2-weighted images, and to evaluate their performance.

The UPENN-GBM (611 patients) and TCGA-GBM (135 patients) cohorts from TCIA (The Cancer Imaging Archive) were used in this study[5][6]. These datasets include magnetic resonance imaging (MRI) scans of de novo glioblastoma patients with gadolinium-enhanced T1-weighted, T1-weighted, T2-weighted, and FLAIR images. Automatic and manually corrected segmentations of tumor sub-regions—tumor core, enhancing tumor, and invasion—were available for all patients. UPENN-GBM was used for training, while TCGA-GBM served as an independent test set. Radiomics features were extracted from three tumor sub-regions (tumor core, enhancing tumor, and invasion), using gadolinium-enhanced T1 and T2-weighted MRI, processed with PyRadiomics v3.1.0[7]. For voxel-wise radiomics, K-means clustering was performed on the features with k = 3, aiming to segment the tumor into distinct imaging habitats. Habitat imaging refers to the identification of spatially heterogeneous subregions within a tumor that may reflect underlying differences in biological characteristics such as cellularity, vascularity, or hypoxia. These radiologically defined habitats provide a noninvasive means to capture intratumoral heterogeneity and are increasingly used to guide personalized treatment strategies[8]. The number of clusters was based on the three tumor sub-regions, and the area of each cluster was calculated in cm³. Pearson correlation analysis was applied to feature pairs, and one from each pair with r > 0.9 was removed to reduce multicollinearity. The remaining features, along with patient age, were used in a Cox proportional hazards regression model. All combinations of two and three predictors were tested. Four-fold cross-validation was used for robustness, and models were evaluated on the test set. Performance was assessed using P-values and the concordance index (C-index). Model simplicity was prioritized to avoid overfitting.

As representative example, the clustering result of the same radiomics feature for two different patients is shown in Figure 1. Thousands of models were built, trained, and tested based on the remaining features after applying Pearson correlation analysis. The C-index for the best models ranged from 0.682 to 0.689 (95% CI: 0.534–0.751; P < .0001) in conventional radiomics and from 0.665 to 0.667 (95% CI: 0.530–0.753; P < .0001) in spatial radiomics, with all models consistently based on three predictors. In conventional radiomics, the most predictive model was derived from features extracted from the invasion sub-region using T2-weighted images (Figure 2). Meanwhile, in spatial radiomics, the best predictive model utilized features from the whole tumor, extracted from gadolinium-enhanced T1-weighted images (Figure 3).

Both radiomics approaches offered comparable results, with the classical method having a slight edge over the spatial radiomics approach, and the same can be said for the two weighting mechanisms. However, there were differences in model performance when features were extracted from different tumor sub-regions, primarily due to tumor heterogeneity. Although these results could be further improved by including more predictors in the model, our goal was to keep the model as simple as possible, which will facilitate the reproducibility and generalization of the results. The next steps will be to improve model performance by implementing the elbow method to choose the optimal K-value for clustering, including more clinical information in the prediction model, and obtaining a second testing set from a local cancer treatment center in Lyon, France.

The implementation of radiomics in clinical practice can be helpful for survival prediction and risk stratification. Both classical and spatial radiomics can offer a simple, non-invasive and easy to use tool to help clinician in their decision making
Walid DANDACHLY (Lyon), Benjamin LEPORQ, Frank PILLEUL, Vincent GREGOIRE, Olivier BEUF
14:00 - 15:30 #47772 - PG397 Sex-Dependent Effects of Obesity on Glioblastoma Features in a Murine Comorbidity Model: Insights from Multiparametric MRI.
PG397 Sex-Dependent Effects of Obesity on Glioblastoma Features in a Murine Comorbidity Model: Insights from Multiparametric MRI.

Obesity is a complex, chronic condition influenced by sex and associated with alterations in brain microstructure, which can be non-invasively assessed using magnetic resonance imaging (MRI) [1]. While obesity has been linked to an increased risk of several cancer types [2], its specific role in the progression of brain tumors—particularly glioblastoma (GBM), the most aggressive primary brain tumor in adults—remains unclear. The aim of this study is to investigate MRI biomarkers that reflect the impact of high-fat diet (HFD) exposure at 10 and 20 weeks on GBM characteristics in a preclinical mouse model, while also assessing potential sex-dependent differences.

Adult C57BL/6 mice were randomly assigned to one of four groups based on diet type and duration: high-fat diet (HFD, 60% fat) or standard diet (SD), for either 10 weeks or 20 weeks (around 9 mice per sex, diet and diet duration group). Following the respective dietary period, GBM was induced in all animals via stereotactic injection of 10⁵ GL261 cells into the brain parenchyma. GBM development was followed-up by T2W MRI on a 7T system. Once tumor volume reached approximately 70 mm³, a multiparametric MRI protocol was conducted, including T2 and T2* mapping, magnetization transfer ratio (MTR), and diffusion tensor imaging (DTI). Parametric maps were generated with Resomapper, a custom-made Python toolkit, and four regions of interest: tumor core (TC), tumor periphery (TP), peritumoral zone (PZ), whole tumor (WT) and contralateral apparently healthy brain (HB) were manually segmented and quantified using ImageJ. Linear mixed effects models were used with R to test for the effect of area, diet, diet duration and sex and the interactions between them. Post-hoc tests were performed in case any of these were found, using FDR correction for multiple comparisons.

In all parametric maps, expected differences between regions of interest were observed. The HB area showed higher MTR and fractional anisotropy (FA) than the tumoral areas, and oppositely, higher values of T2, mean, radial and axial diffusivity (MD, RD, AD) were found in the tumor than in HB. T2* was more homogeneous, but slightly higher in the HB (Fig. 1). Regarding DTI parameters, in MD a significant effect of the interaction Area:Diet:Duration (p<0.05) was observed. No significant differences between diets or timepoints were directly found, but differences between areas vary depending on the diet group. Particularly, in the 10 weeks HFD group, regardless of sex, TP showed a significant difference with the TC that does not appear in other groups that even showed the opposite tendency (Fig. 2). The results in RD are similar to these. In AD only a Sex:Area effect was observed (p<0.05). Males tended to have higher AD values than females across all brain areas, specifically in the HB area, but differences were not statistically significant. Similarly, in FA some effects including sex were found but do not translate into significant group differences. T2 results showed many significant effects, including a strong effect of the Sex:Diet:Duration interaction (p<0.001) and also of Area:Diet:Weeks (p<0.05). At 10 weeks, there is a significant difference between diets in the WT area, as well as in the TP, but only in females. Specifically, tumor of HFD females had higher T2 values than the corresponding controls. At 20 weeks, this difference disappeared in the females but appeared in males. Also, a difference between diets in the HB area was observed only in males, being the opposite at 10 weeks than at 20 weeks: T2 values were higher in HB of the SD mice at the early stage and higher in HFD mice at 20 weeks of diet (Fig. 3). In T2* and MTR some significant effects including diet type and duration were found, but do not translate into significant differences between groups.

First of all, differences in all parameters between the HB and tumoral areas are the expected, indicating presence of edema and haemorrhage in all tumor areas, and also slight edema in the PZ [3]. The most interesting insights come from MD and T2. MD suggests that in the 10-weeks HFD mice the edema is more concentrated in the TP respect the TC, which does not happen in other groups. Moreover, the T2 results indicate that the evolution with obesity stage of the water content of the tumor happens differently between sexes, and in the case of males also of the HB area, which might be affected by the tumor differently. Further work is currently being performed to validate these results with immunochemistry markers of neuroinflammation and proliferation, as well as 1H HRMAS spectroscopy.

This work characterizes a murine model of GBM and obesity comorbidity, revealing that tumor characteristics and its effects on the rest of the brain are influenced by sex, diet type, and diet duration, despite numerous confounding factors. The immunochemistry and metabolomic spectroscopy assays will help understand the underlying mechanisms of these MRI results.
Raquel GONZÁLEZ-ALDAY, Nuria ARIAS-RAMOS, Blanca LIZARBE, Pilar LÓPEZ-LARRUBIA (Madrid, Spain)
14:00 - 15:30 #45869 - PG398 Investigating the dosimetric impact of gynecological brachytherapy applicator reconstruction on T2-weighted and T1-weighted MRI images versus CT images, and quantifying potential benefits of reconstructing on T1- versus T2- weighted images.
PG398 Investigating the dosimetric impact of gynecological brachytherapy applicator reconstruction on T2-weighted and T1-weighted MRI images versus CT images, and quantifying potential benefits of reconstructing on T1- versus T2- weighted images.

Brachytherapy (BT) for gynecological cancer treatment planning traditionally employs CT images for applicator and catheter reconstruction, and MRI imaging for organ and target contouring. Many centers now employ MRI-only BT planning. Reconstructing on MRI images poses challenges as applicators and catheters are more difficult to visualize on MRI than CT, and inherent MRI distortions can lead to dosimetric effects of 2-7% per mm of displacement. This research retrospectively assessed the dosimetric differences for gynecological brachytherapy treatment plans using applicators reconstructed on CT versus MRI images. Images from two MRI pulse sequences were evaluated: a T2-weighted-2D-PROPELLER and a T1-weighted-3D-LAVA-FLEX sequence.

The study included 12 cervical cancer patients undergoing three fractions each of BT with a Venezia (Elekta) applicator, either with or without catheters. Images from each implant were acquired on a 1.5 Tesla Avanto fit GE scanner and a Philips Big Bore Radiation Therapy CT scanner. The MRI scans consisted of a T2-2D-PROPELLER sequence and a T1-3D-LAVA-FLEX sequence. The MRI images were oriented in the plane of the tandem to minimize distortions.; thus, MIM (Medical Image Merge, version 7.2.8) was employed for reorientation. The Oncentra Treatment Planning System (Elekta, version 4.6.2) was used to reconstruct the applicators and catheters on each CT or MRI image. A 3D dose grid was calculated in Oncentra for each MRI or CT reconstruction using the dwell times and dwell positions from the clinical treatment plan. A gamma index analysis was employed to compare the dose maps between the reconstructions done on CT and MRI images, using a passing rate of 90% with a 3%/2mm dose difference/distance to agreement, and 10% maximum dose thresholding. Average gamma results were obtained for the T2- and T1-weighted images. A Wilcoxon signed ranked test was completed (significance level of 0.05, two-tailed) to assess if measured distortions using the T2-2D-PROPELLER versus the T1-3D-LAVA FLEX reconstruction are significantly different. Moreover, we investigated if the number of catheters affected gamma pass rates. A Wilcoxon rank-sum test was used to assess if one sequence outperformed the other for each number of catheters.

In some cases, the MRI sequences being investigated were not completed due to logistical issues. These cases were removed from the study. The T2- and T1-weighted images from two different studies were not included due to image corruption issues. In total, 27 T2-weighted images and 27 T1-weighted images were included. Figure 1 displays the reconstruction in example CT, T2-weighted, and T1-weighted images for a patient. For the Wilcoxon signed rank test comparing gamma results obtained from T2-weighted images to T1-weighted images, 26 total samples were included since the unusable images mentioned above were from different cases. Of these cases, 19 included catheters and the rest were applicator only. The average gamma result over all T2- and T1-weighted image reconstructions were 96.1 ± 2.8% and 96.6 ± 3.1%, respectively. Minimum gamma results were 90.2% and 90.5% for T2- and T1-weighted images, respectively. Figure 2 displays the skew of gamma pass rates for the T2- and T1-weighted images. Figure 3 reveals the gamma analysis results for T2-2D-PROPELLER and T1-3D-LAVA-Flex reconstructions versus the number of catheters. The Wilcoxon tests indicated there was no significant difference between T2- and T1-weighted reconstructions overall, or for 0 to 5 catheters. However, T1-3D-LAVA-FLEX significantly outperformed T2-2D-PROPELLER for cases with 6 catheters.

Figure 1 reveals that the T2-PROPELLER and T1-3D-LAVA-FLEX MRI images are of sufficient quality for reconstruction and contour delineation. All images passed the gamma index criterion of 90%. The results illustrate that there isn’t a significant difference between dose maps obtained from applicator reconstructions on T2-2D-PROPELLER and T1-3D-LAVA-FLEX MRI images compared to CT images. However, as seen in Figure 2, reconstructions done on T1-3D-LAVA-FLEX are skewed towards higher gamma rates compared to those done on T2-2D-PROPELLER. Notably, Figure 3 reveals that the mean T2-2D-PROPELLER minus T1-3D-LAVA-Flex gamma differential is within the standard deviation of the gamma pass rates (~ 3%) when 0 to 4 catheters are reconstructed. As catheter number increases to 5 or 6, T1-3D-LAVA-Flex reconstructions perform superiorly to T2-2D-PROPELLER reconstructions. T1-weighted images significantly outperform T2-weighted images for 6 catheters. These results suggest that T1-weighted images may be beneficial for image reconstruction, particularly if using more catheters.

T2-2D-PROPELLER and T1-3D-LAVA-FLEX MRI images are safe and effective for MRI-only gyne bracytherapy. T1-weighted images may offer benefits for reconstructions of 6 catheters or more.
Clara J FALLONE (Calgary, Canada), Matthew J FRICK
14:00 - 15:30 #47297 - PG399 Intraoperative arterial spin labeling in pediatric posterior fossa brain tumors – methodological implications.
PG399 Intraoperative arterial spin labeling in pediatric posterior fossa brain tumors – methodological implications.

Central nervous system tumors are the most common solid tumors in children, with about half arising in the posterior fossa [1,2]. Following surgery, approximately 25% of children with posterior fossa tumors develop cerebellar mutism syndrome (CMS) - a condition marked by delayed-onset speech, motor, and emotional disturbances typically 24-48 hours postoperatively [3,4]. Early identification of anatomical or functional changes, such as cerebral blood flow (CBF), is critical for understanding the pathophysiology of CMS. Intraoperative MRI provides a unique opportunity for monitoring of CBF during surgery. Arterial spin labeling (ASL) is a non-invasive MRI technique used to quantify CBF and is implemented during intraoperative MRI procedures at our center. However, CBF measurements can be influenced by various factors, including anesthesia, patient positioning, and MR acquisition parameters. To examine the methodological implications for interpreting intraoperative CBF values, we compared ASL scans acquired during surgery to those obtained the day prior in children with posterior fossa tumors.

Study design Six patients (2m/4f; age: 6.7±4.9 years) who underwent surgical resection for posterior fossa tumors were included. Written informed consent was obtained. Images were acquired using a 3-Tesla MRI scanner (Ingenia ElitionX, Philips Healthcare). Preoperative scans (timepoint 1) were obtained prior to surgery (2.8±2.7 days), using a 32-channel head receive coil with the patient positioned in supine position. Intraoperative scans (timepoint 2) were conducted in the operating room (prior to craniotomy), with patients positioned in surgical prone position, secured in a head clamp, and scanned using two single-loop RF coils to accommodate the intraoperative setting (Figure 1). ASL acquisition Pseudo-continuous ASL scan protocols were consistent across both timepoints, utilizing a 3D GRASE sequence with a labeling duration of 1800 ms and a post-labeling delay of 1800 ms. Imaging parameters were as follows: 8 dynamic scans; 4 background suppression pulses; matrix=64x64x23; FOV=240x240x161 mm3; acquired voxel size=3.75x3.75x7.0 mm3; TE=13ms; flip angle=90°. Repetition time (TR) differed between the two timepoints, which was 4280 ms at timepoint 1 and 4600 ms at timepoint 2. Image processing Quantitative CBF maps were generated using established recommendations [5]. The Bayesian Inference for Arterial Spin Labeling (BASIL) toolbox [6] was used to compute CBF values (mL/100 g/min). Inversion efficiency was set to 0.69 and T1 of blood was adjusted using patient-specific hematocrit values [7]. Adaptive spatial regularization and motion correction were applied, and voxel-wise calibration using M0 images was performed. To extract CBF values in cerebral gray matter (GM), tissue segmentation was performed on T1-weighted images using the FAST toolbox in FSL. GM maps were subsequently registered to native ASL space. Mean CBF values for cerebral GM were computed, and paired t-tests compared the mean cerebral GM CBF values between timepoint 1 and timepoint 2.

CBF maps for two patients are presented in Figure 2, illustrating systematic differences in perfusion. Quantitative analysis revealed that mean CBF values in the cerebral GM at timepoint 1 (50.16±26.11) were significantly higher than those at timepoint 2 (14.40±5.76) (p=0.01; Figure 3). Notably, this pattern of decreased CBF was consistent across patients.

In children with posterior fossa tumors, intraoperative ASL shows significantly lower CBF values compared to measurements obtained prior to surgery. This difference may arise from factors such as patient positioning (supine vs. prone). Studies in healthy adults have shown no significant CBF differences across these positions, except for a trend toward slightly lower CBF in prone position [8]. Similar comparisons have not been conducted in children. Intraoperative ASL imaging is limited by image acquisition constraints, including alignment along the anterior commissure–posterior commissure line, which may hinder the labeling slab from being perpendicular to the arteries, particularly when patients are in prone position. Additionally, due to time constraints, angiography is not feasible, further limiting accurate positioning of the labeling slab. These limitations reduce inversion efficiency, potentially leading to underestimated CBF values. These constraints complicate longitudinal CBF comparisons. Individual measurement of inversion efficiency, such as through phase-contrast velocity MRI [9], may help mitigate these effects. Alternatively, relative CBF maps can be used, although this will not preserve global CBF changes.

In children with posterior fossa tumors, intraoperative CBF values are significantly lower than preoperative values, potentially making comparison of absolute CBF measurements less reliable. Methodological factors, especially inversion efficiency, may contribute to the observed CBF differences.
Iris OBDEIJN (Utrecht, The Netherlands), Rick BRANDSMA, Thomas LINDNER, Pien JELLEMA, Eelco HOVING, Marita PARTANEN
14:00 - 15:30 #45916 - PG400 Voxel-Wise Assessment of Tumor Hypoxia in a Murine Pancreatic Cancer Model Using TOLD-MRI and Histological Correlation.
PG400 Voxel-Wise Assessment of Tumor Hypoxia in a Murine Pancreatic Cancer Model Using TOLD-MRI and Histological Correlation.

Pancreatic cancer is one of the most aggressive cancers and tumors are characterized by hypoxia [1]. Hypoxia induces numerous adaptive cellular responses that contribute to tumour resistance to radiotherapy and certain drugs, and is a marker of aggressiveness [2]. To noninvasively map tumor hypoxia, several teams have explored MRI-based approaches, particularly Tissue Oxygen Level-Dependent (TOLD) contrast that uses oxygen as a contrast agent [3,4]. In this work, we attemp and validate by correlate on voxel wise with IHC marker CAIX. The aim of this study was to assess tumour hypoxia using TOLD contrast in mice subcutaneously grafted with pancreatic tumours, and to validate the method by voxel-wise correlation with reference histological imaging.

Two pancreatic cancer cell lines, AsPC1 and SW1990, were subcutaneously injected into the flanks of five mice per group. Once tumors reached 500 mm³, mice were anesthetized for MRI acquisition using a 9.4 T preclinical scanner. The center of each tumor was marked on the skin and overlaid with a water-filled tube to define the imaging plane (Fig. 1). The MRI protocol included a high-resolution T2w sequence, DW-MRI, and an inversion recovery fast spin echo multislice (IR-FSEMS) sequence. The IR-FSEMS sequence was acquired twice during air and twice during oxygen breathing for TOLD measurements. For TOLD analysis, R1 maps were generated by fitting IR-FSEMS data acquired under air (R1_air) and oxygen (R1_O2) conditions, and %∆R1 maps were computed as %∆R1=(mean(R1_O2) – mean(R1_air))/mean(R1_air). ADC maps were extracted from DW-MR images. Following MR scans, mice were euthanized, and tumors were excised and sectioned parallel to the imaging plane (Fig. 1). From each tumor, six 2 µm-thick histological sections were obtained at 150 µm intervals to capture the full histological information corresponding to the MRI slice thickness. Slides were stained with CAIX IHC, a marker of hypoxia, and a threshold-based segmentation approach was applied using QuPath to identify hypoxic pixels based on positive staining. The resulting CAIX-classified images were interpolated to the MR resolution, generating hypoxic fraction maps and then registered to the MR images using manual affine and automatic non-rigid registrations. Hypoxic pixels were identified on %∆R1 and CAIX fraction maps using the following thresholds: %∆R1 ≤ 0 and CAIX fraction >0.15.; all other pixels were classified as normoxic.

High ADC values were used to identify necrotic regions, which were excluded from the hypoxic pixel classification. Hypoxic segmentation maps derived from TOLD imaging were compared on a pixel-wise basis with those obtained from CAIX IHC. Evaluation maps were generated to assess the accuracy of TOLD-based classifications, distinguishing correctly identified normoxic and hypoxic pixels from misclassified ones. Figure 2 presents TOLD- (%∆R1) and CAIX- based segmentation maps alongside the corresponding evaluation maps for two tumors from each cell line (AsPC1 and SW1990). Figure 3a presents the percentage of pixels from the evaluation maps, indicating the proportion of correctly and incorrectly classified hypoxic and normoxic pixels based on TOLD imaging, across both cell lines and all tumours. Figure 3b displays the number of pixels identified as hypoxic or normoxic by the TOLD-based classification compared to the reference classification derived from CAIX-stained histological images.

In both MRI and histological assessments, the SW1990 cell line produced more homogeneous tumors, with a greater proportion of normoxic pixels, compared to AsPC1 tumors, which exhibited a higher prevalence of hypoxic areas. AsPc1 tumors displayed increased heterogeneity, with a more balanced distribution of hypoxic and normoxic pixels. This balance in AsPC1 tumors contributed to a higher classification error for TOLD imaging (51%) relative to SW1990 (29%), resulting in an overall error rate of 36%. Furthermore, the distribution of pixel counts across classification groups was consistent between TOLD and CAIX evaluations.

This study successfully established a workflow for validating an MRI-based method against histological reference images on a voxel-by-voxel basis, despite a substantial difference in resolution (0.46x0.46x2 µm3 vs 250x250x1000 µm3). TOLD contrast proved effective in assessing hypoxia in subcutaneously grafted pancreatic tumors in mice, showing a strong correlation with histological findings. This approach enables the evaluation of therapeutic efficacy in pancreatic cancer by measuring hypoxia, providing a valuable tool for future drug efficacy studies.
Marion TARDIEU (Montpellier), Maïda CARDOSO, Tristan MANGEAT, Christophe GOZE-BAC, Bruno ROBERT, Véronique GARAMBOIS, Stéphanie NOUGARET, Christel LARBOURET
14:00 - 15:30 #47943 - PG401 Voxel-wise confidence range of DCE-MRI in breast cancer: A Monte Carlo pilot investigation of extended Tofts models.
PG401 Voxel-wise confidence range of DCE-MRI in breast cancer: A Monte Carlo pilot investigation of extended Tofts models.

Pharmacokinetic (PK) models, a quantitative method of DCE-MRI to offer quantitative physiological markers of plasma volume fraction (vp), extravascular extracellular space fraction (ve), and permeability–surface area product (PS), have been employed to facilitate tumour stratification and treatment planning [1–3]. Extended Tofts Models (ETM), a category of PK models, is consisted of Fast Exchange Limit (FXL) and No Exchange Limit (NXL) approaches with proven utility in specific clinical scenarios, however the suitability for breast cancer imaging is yet to be established. We therefore set out to investigate the suitability of FXL and NXL approaches for breast cancer imaging using Monte Carlo simulation, and to explore the determinants for voxel wise confidence range.

We hence acquired DCE-MRI from a patient with invasive ductal carcinoma and conducted FXL and NXL analysis, and numerical simulation to derive voxel wise coefficient of variation (CV), with study design shown in Figure 1. The study was approved by the London Research Ethics Committee (Identifier: 17/LO/1777) and registered as a clinical trial [NCT03501394]. Imaging Experiment: DCE-MRI data were acquired on a 3T MRI scanner (Achieva TX, Philips Healthcare, Best, Netherlands), using a 3D T1-weighted spoiled gradient echo (SPGR) sequence, with a repetition time (TR) of 3.8 ms, echo time (TE) of 2.3 ms, flip angle of 12˚, voxel size of 1.0 × 1.0 × 1.5 mm³, and 29 dynamics. Image analysis was conducted using MRIcron (University of South Carolina, USA), with rigid-body motion correction applied. Maps of vp, PS, ve were computed separately for FXL and NXL analysis using SEPAL algorithm [4], with model T1 of 1.3 s [5], r₁ relaxivity of 5.9 s⁻¹·mM⁻¹, r₂ relaxivity of 17.5 s⁻¹·mM⁻¹ [6] and a population-averaged arterial input function (AIF) [7]. Numerical Simulation: The perfect signal for a voxel was generated using corresponding experimentally derived vp, PS, ve from FXL analysis. The baseline signal was computed as the average of the corresponding first 4 time points, and subsequently the time course of each voxel was normalised as the percentage difference of the baseline signal. The experimentally derived SNR of the same voxel from FXL analysis was employed to generate Gaussian-distributed noise and added to the perfect signal to simulate the realistic signal. The realistic signal was analysed using the FXL approach to yield simulation derived vp, PS, ve. The noise generation and fitting were repeated 100 times to create 100 sets of outputs and subsequently the mean, standard deviation and CV were computed. Maps of mean, standard deviation and CV for vp, PS, ve were obtained by iterating the simulation through all the voxels within the tumour. Subsequently, the maps were computed for NXL using experimentally derived vp, PS, ve and SNR and NXL analysis for fitting. Statistical Analysis: All statistical tests were conducted using SPSS (Release 29.0, SPSS Inc., Cincinnati, OH, USA). Wilcoxon signed-rank paired tests were performed to evaluate the differences in CV between FXL and NXL analysis. Spearman’s correlations tests were performed for CV against SNR and mean values.

There is no significant difference in vp, PS, ve between FXL and NXL analysis, and all the statistical findings can be found in Table 1.There was a significant difference in CV of vp (p < 0.001, Figure 3A) between FXL (0.0107 ± 0.1213) and NXL (0.0111 ± 0.1227). There was a significant difference in CV of PS (p < 0.001, Figure 3A) between FXL (0.0032 ± 0.1159) and NXL (0.0146 ± 0.2253). There was a significant difference in CV of ve (p < 0.001,Figure 3A) between FXL (0.0064 ± 0.0485) and NXL (0.0181 ± 0.1144). There was a significant negative correlation between CV of vp (p < 0.001), PS (p < 0.001), ve (p < 0.001) from FXL against SNR (Figure 3B). There was also a significant negative correlation between CV of vp (p < 0.001), PS (p < 0.001), ve (p < 0.001) from FXL against corresponding mean value (Table 1).

Although the mean PK model outputs showed no significant difference between FXL and NXL models with reasonable number of instances, the CV of FXL is significantly lower than NXL on all the output parameters, indicating FXL as the preferred model for measurement error consideration. Strong negative correlations between CV and both SNR and central parameter values indicate that signal quality and parameter magnitude jointly influence uncertainty. These findings highlight the importance of model choice and SNR-aware interpretation in voxel-level DCE-MRI analysis.

Voxel wise Monte Carlo simulations enable spatially resolved confidence range quantification of DCE-MRI in breast cancer. The FXL model showed lower variability compared to NXL model.
Rachaita PODDER (Newcastle Upon Tyne, United Kingdom), Sai Man CHEUNG, Kangwa NKONDE, Andrew BLAMIRE, Jiabao HE
14:00 - 15:30 #47909 - PG402 Hypoxia-Targeted BOLD MRI For Differentiating True Progression From Pseudoprogression/ Radionecrosis In Glioblastoma: A Pilot Study.
PG402 Hypoxia-Targeted BOLD MRI For Differentiating True Progression From Pseudoprogression/ Radionecrosis In Glioblastoma: A Pilot Study.

Distinguishing true glioblastoma progression/recurrence from treatment-related pseudoprogression/radionecrosis is a clinical challenge.[1] Conventional MRI routinely cannot differentiate between these entities, resulting in a risk of overtreatment or delay of necessary interventions.[2] Hypoxia targeted blood oxygen level-dependent (BOLD) MRI is a novel imaging technique that may allow for enhanced characterization of tumor tissue based on underlying vascular features and oxygenation metabolism. In this study we prospectively aim to test the hypothesis that the information provided by hypoxia-targeted BOLD MRI may help differentiate between tumor progression/recurrence and treatment effect changes.

Patients with radiographically suspected glioblastoma progression/recurrence were included to undergo a hypoxia targeted BOLD MRI. A computer-controlled gas blender (RespirAct) was used to induce transient standardized isocapnic hypoxia in the lungs. A T2* weighted gradient-echo (GE) echo-planar imaging (EPI) sequence was used to acquire the imaging under controlled oxygen modulation. A custom Matlab script and SPM were used for preprocessing and analysis of the images. The blood oxygenation level-dependent (BOLD) response of tumor regions was assessed and compared to standard contrast-enhanced (CE)-T1 and FLAIR sequences. The initial tumor board decision was extracted for each case of radiographically suspected progression. It was categorized into “progression/recurrence” and “pseudoprogression/treatment related changes”.

Six patients with radiographically suspected progression were included. Initial multidisciplinary discussion classified four as “progression” and two as “pseudoprogression”. In the progression group, contrast-enhancing regions showed consistent BOLD signal decrease in response to hypoxia. In pseudoprogression, larger areas of non-responsive tissue were observed. These preliminary findings suggest distinct BOLD signal patterns between the two entities.

This pilot analysis suggests that hypoxia-modulated BOLD MRI may differentiate progression from treatment-related changes based on differential response to hypoxic modulation during BOLD imaging underlying different hemodynamic and oxygenation features. While the sample is small, this approach builds on earlier CO₂-based BOLD imaging studies in radiation necrosis, though the underlying physiological mechanisms are different.[3] 18F-(fluoroethyl)-l-tyrosine positron emission tomography (FET-PET) is the current gold standard to detect progression.[4] Ongoing recruitment and planned correlation with FET-PET imaging and clinical follow-up will allow for more definitive assessment of diagnostic utility. The combination of hypoxia-targeted BOLD-MRI with PET and perfusion techniques bears potential to further complement radiological follow-up in treated glioblastoma patients. The included patients will be longitudinally followed to determine which lesions prove to be true progression.

Our initial observations indicate that hypoxia-targeted BOLD MRI may constitute an additional imaging biomarker for distinguishing true progression from pseudoprogression/radionecrosis in a multimodal imaging setting. Additional studies are necessary to evaluate BOLD responses in pseudoprogression cases. This strategy may enhance recurrence evaluation, resulting in more accurate future imaging of gliomas.
Tristan SCHMIDLECHNER, Natalia CANTAVELLA FRANCH, Vittorio STUMPO (Zurich, Switzerland), Jacopo BELLOMO, Christiaan Hendrik Bas VAN NIFTRIK, Martina SEBÖK, Michael WELLER, Andrea BINK, Zsolt KULCSAR, Luca REGLI, Jorn FIERSTRA
14:00 - 15:30 #47299 - PG403 Conventional MR spectroscopy sequences combined with machine learning allow distinguishing between IDH mutation and grade in astrocytomas.
PG403 Conventional MR spectroscopy sequences combined with machine learning allow distinguishing between IDH mutation and grade in astrocytomas.

Accurate grading and identification of IDH status in astrocytomas are essential for guiding therapeutic strategies and predicting patient prognosis. Their 2021 WHO classification emphasizes the importance of molecular markers, particularly IDH status, in tumor characterization [1]. Considering this, further investigation is needed to explore non-invasive diagnostic approaches. On the other hand, since 2012 when specific sequences were developed to detect the 2-hydroxyglutarate metabolite [2,3] conventional MRS sequences are not regarded as an option to detect the IDH mutation in gliomas. This study aims to re-evaluate the potential of magnetic resonance spectroscopy (MRS) in determining IDH status (mt: IDH mutated, wt: IDH wild type) and tumor grade (2, 3, or 4) by analyzing metabolite patterns across different astrocytoma subtypes, under the assumption that the effects of mutation and grade on the metabolic profile will affect enough the whole spectral pattern to allow for non-invasive discrimination.

The study utilized Single Voxel (SV) MRS data collected at Hospital de Bellvitge with 1.5T Philips Ingenia and Intera scanners in Spain. Five classification tasks were performed on Short Echo (SE, 30 ms), Long Echo (LE, 136 ms), and concatenated SE+LE spectra. Sequential forward feature selection and linear discriminant analysis were used to identify features to distinguish between: 1/Astrocitoma-IDH-mt-grade-2 (A2-mt) from Astrocitoma-IDH-NEC-grade-2 (A2-wt), 2/Astrocitoma-IDH-mt-grade-3 (A3-mt) from Astrocitoma-IDH-NEC-grade-3 (A3-wt), 3/A2+A3-wt from A2+A3+ Astrocitoma-IDH-mt-grade-4 (A4-mt), 4/A2 from A3, and 5/ A2+3 from A4.Classifiers were evaluated with area under the curve (AUC) and Balanced Error Rate (BER). The best classifier was defined by the smallest BER in the training phase.

After application of inclusion criteria, there were 71 cases with SV MRS available for analysis at SE (15 A2-mt, 12 A2-wt, 20 A3-mt, 13 A3-wt and 11 A4-mt) and 69 cases at LE (14 A2-mt, 13 A2-wt, 18 A3-mt, 13 A3-wt and 11 A4-mt). Recurring discriminative spectral features include creatine, choline and lipids at SE and lactate and Glx, at LE which can be seen on the mean spectra (not shown). ). For the first question SE, and for the other questions the combined echo time, yielded the best classifiers. Notably, all AUC values for the best echo are quite high 0.938, 0.933, 0.834, 0.849 and 0.870 for the 5 questions, respectively.

Histologically verified low-grade gliomas can be identified non-invasively, prior to surgery, with a conventional magnetic resonance imaging exam, due to their anatomical and contrast uptake characteristics. However, it is not as easy to distinguish between grades or IDH status. For this reason, a biopsy is needed, being performed before or during the removal of the tumour, in order to characterise the particular type of glioma.The discovery of molecular biomarkers of favourable prognosis in glioma subtypes, such as the IDH mutation was taken into account in the 2021 revision of the WHO classification of brain tumors [4].

These findings support our claim that IDH status can be successfully determined for A2 and A3, while A2 can be differentiated from higher grades of astrocytoma without needing specialized sequences [5].
Lili TOTH (Spain, Spain), Carles MAJÓS, Albert PONS-ESCODA, Carles ARÚS, Margarida JULIÀ-SAPÉ
14:00 - 15:30 #47396 - PG404 Stereotactic radiosurgery-induced changes in brain metastasis patients detected within two weeks after therapy using multi-parametric qMRI.
PG404 Stereotactic radiosurgery-induced changes in brain metastasis patients detected within two weeks after therapy using multi-parametric qMRI.

Brain metastases (BM) represent the most common malignant brain tumors in adults[1]. To obtain local control, neurosurgery and stereotactic radiosurgery (SRS) are competitive as well as complementary approaches that are further combined with systemic therapy[2]. Preoperative SRS offers the advantage of more precise target volume definition and reduces the risk of tumor spread into the cerebral spinal fluid space at the time of surgery[3]. Several MRI approaches have been taken to assess BM treatment efficacy, including synthetic MRI, quantitative MRI (qMRI), radiomics, magnetic resonance spectroscopy (MRS), and perfusion imaging[4–10]. With regard to SRS, treatment response is generally evaluated weeks after end of the treatment course[11]. For preoperative SRS, the availability of robust Quantitative Imaging Biomarkers (QIB) before surgery would be beneficial to assess treatment outcome and possible complications such as radiation necrosis on an individual patient basis. In this explorative study, we focus on early changes in conventional MRI contrast, which can be established from difference images calculated from pre-SRS and post-SRS MRI data. Image contrast in qualitative MRI-data (weighted-images) might be affected by hardware calibration, which may cause a bias in the difference images. This can be avoided using a quantitative MRI protocol (qMRI). Therefore, we used both, difference images from weighted MRI as well as qMRI to evaluate changes in BM following pre-operative SRS. In addition, we explored whether changes in automatic tumor segmentation mask volumes are consistent with the changes observed in the qMRI difference maps.

In vivo measurements were performed on six BM patients in two sessions (pre-SRS, post-SRS). The pre-SRS session was performed for SRS planning. The post-SRS session was performed within two weeks after SRS but prior to the surgical excision of symptomatic metastases. The measurements were carried out using a whole-body 3T MR Scanner (MAGNETOM Prisma (VE11C) or MAGNETOM Skyra (VE11C), Siemens Healthineers, Erlangen, Germany). In addition to the standardized Brain Tumor Imaging protocol (BTIP) [12], qMRI measurements were performed with a recently published vendor-based protocol[13]. Compared to the published protocol, the resolution was increased providing PD, T1, T2*, and QSM maps at 1mm isotropic. The planned radiation dose profile was later registered to the qMRI image space using FSL[14]. The BraTS-Toolkit was used to segment edema (OE), necrotic/cystic region (NE), and enhancing tumor (CE) masks. qMRI difference maps were computed by co-registering pre- and post-SRS qMRI maps, and calculating voxel-wise differences. For the regions WM, GM, NE, OE and CE, correlations were computed between the mean dose and the qMRI differences (post-SRS – pre-SRS). Fig. 1 shows an overview of the study and obtained MR data.

CE mask volumes increased for the majority of patients. With regard to OE mask volumes, 50% decreased and 50% increased, independent of glucocorticoid dosage between pre- and post-SRS MRI. These volume changes corresponded to the changes visible in the qMRI difference maps. qMRI changes did not significantly correlate with radiation dose. Figure 2 demonstrates differing changes in tumor segmentation volumes for two patients. As seen in Figure 3, changes in OE differ between patients, with some showing a decrease in edema and some showing an increase after SRS. Figure 4 demonstrates the group level box-plots of the mean qMRI difference values for the different tissue classes. Paired t-tests revealed no significant differences between WM+GM and NE, CE and OE classes.

While differences between normalized weighted-images revealed similar changes as for qMRI data for some subjects, it is not always possible to correct for all the transmitter and receiver field variations in the pre-RT and post-RT scans. qMRI data is preferred as QIB, as it ideally is independent of scanner- and session-related discrepancies. BRATs segmentations revealed variable changes in NE, CE and OE volumes across patients. These volume changes also correspond to the changes visible in the qMRI difference maps. The qMRI changes did not significantly correlate with radiation dose or with the cortisone-therapy dose, which implies that the observable change in the parameters is probably not just dose-dependent or cortisone-therapy dependent, but might signify individual tumor response to SRS. The different effects of SRS across patients may have predictive value for treatment outcome and possible complications such as radiation necrosis.

These results demonstrate that changes in qualitative and quantitative MR scans of BM patients are detectable even within two weeks after SRS.
Dennis C. THOMAS (Frankfurt am Main, Germany), Svenja KLINSING, Mariem GHAZOUANI, Anna-Luisa LUGER, Seyma ALCICEK, Andrei MANZHURTSEV, Robert WOLFF, Marcus CZABANKA, Joachim P. STEINBACH, Ulrich PILATUS, Elke HATTINGEN, Pia S. ZEINER, Katharina J. WENGER
14:00 - 15:30 #47659 - PG405 Lactate, glutathione and GABA measurements in metastasis using MEGA-sLASER at 3T.
PG405 Lactate, glutathione and GABA measurements in metastasis using MEGA-sLASER at 3T.

Brain metastases (BM) are the most common malignant brain tumors in adults [1]. The therapeutic response to immune and targeted therapies remains unpredictable, however, reliable biomarkers could improve predictive accuracy. Recent advances highlight cerebrospinal fluid (CSF) profiling as a minimally invasive method to gain insights into the tumor microenvironment. Non-invasive metabolic imaging using MRS offers the potential to locally examine the tumor metabolism in vivo. In this study, edited MRS combined with qMRI is used to accurately measure absolute concentrations of lactate (Lac) not contaminated by lipids, glutathione (GSH) and gamma-aminobutyric acid (GABA) in BM. To our knowledge, for the first time the relationship between MRS-detectable Lac concentrations in BM and the Lac concentrations in CSF are analyzed.

Participants: 12 patients with BM: 4 with non-small-cell lung cancer, 3 with breast cancer, 2 with clear renal cell carcinoma, 2 with small-cell lung cancer and 1 with melanoma. Data were acquired using a 20-channel phased-array head coil on a 3T Siemens Prisma. Diagnostic imaging (3D T1w MPRAGE, 2D T2w, 3D FLAIR, 12 min) was performed, followed by MRS (15 min) and qMRI (8 min). Lumbar puncture was performed within 24 hours of MRI. MRS was acquired in the BM area (Fig. 1A) and in the contralateral normal appearing brain tissue (CL) (Fig. 1B). For MRS, MEGA-sLASER pulse sequence [2] was used with TR = 2 s and TE = 80 ms. The 90 Hz frequency selective editing pulses were applied at frequencies δLac/GSH = 4.56 ppm, δGABA = 1.9 ppm, δOFF = 7.5 ppm to acquire 3x64 ONGABA, ONGSH/Lac, and OFFAll acquisitions, respectively. 3 unsuppressed water spectra were also acquired. Voxels of 20x20x20 mm3 were used in 8 patients, while 25x25x25 mm3 voxels were used in 4 patients with larger BM. For the qMRI, a vendor-based protocol (Thomas et. al [3]) was used to obtain PD and T1 maps. T2 maps were estimated from the T2w: 1) T2w were corrected for receiver field inhomogeneities in SPM [4]; 2) from the corrected T2w and PD map, the PDw was synthesized (sPDw) considering the mean WM T2 = 80 ms [5]; 3) T2 map was computed: T2map = -TE/log(T2w_biascorr/sPDw) MRS preprocessing was performed in Gannet [6] (MATLAB). Fitting and water-referenced quantification were performed in LCModel [7] using appropriate basis sets. Absolute concentrations were quantified using the Gasparovich et. al. method [8], water relaxation correction was performed using voxel-wise water concentration, T1 and T2 values calculated from the PD, T1 and T2 maps, respectively, using the in-house MATLAB code. For metabolite relaxation correction, literature T1 and T2 values were used. Considering that the tNAA signal originates from normal brain tissue only, a PVfactor was calculated accounting for the partial volume (PV) of the BM to determine the BM’s Lac concentration. PVfactor = (tNAACL – tNAABM)/tNAACL

Examples of the spectra acquired in one patient are shown in figure 2. For the BM, mean (SD) of the Cr SNR and the linewidth (LW) were 18.9 (5.9) and 5.1 (1.4) Hz, respectively. For the CL, SNR was 25.2 (9.5) and LW was 5.3 (1.4) Hz. High consistency was observed between the CL spectra. The water suppression factor was always >99%. PV-corrected Lac concentration was 7.5 (8.2) mM. Figure 3A shows the fitting quality of the Lac signal (without macromolecules), which was significantly better in the BM compared to CL. No correlation was observed between the MRS Lac levels and the CSF Lac level (figure 3B). The GABA and GSH concentrations were lower in metastasis compared to the CL (figure 4).

In this study, MEGA-sLASER pulse sequence allowed to reduce lipid contamination of the Lac signal, providing high-quality spectra for Lac measurements. Furthermore, it allowed to get GABA, and GSH concentrations in BM, even with voxel sizes as small as 8 ml. The use of qMRI provided water relaxation parameters, which significantly impact metabolite quantification in lesions [9], including BM. The absence of a correlation between MRS-derived BM Lac and lumbar-puncture derived CSF Lac could be due to the different sources of these parameters. MRS lactate reflects localized intra- or peritumoral metabolism, indicating hypoxia, altered glycolysis, and inflammatory changes [10]. In contrast, CSF Lac may remain near-normal even in the presence of highly glycolytic parenchymal BM, especially if there is no leptomeningeal involvement. The reduced concentrations of GABA and GSH in the BM regions most probably indicate the loss of normal cerebral tissue. Data acquisition and processing are ongoing. To improve corrections for the PV effects by more accurately estimating the tissue type fractions within the voxel, BraTS [11] will be performed.

MEGA-sLASER combined with qMRI enables reliable Lac measurement in brain metastases. Voxel size limitations require partial volume effects correction. Yet, no correlation with CSF Lac was observed highlighting distinct metabolic sources.
Andrei MANZHURTSEV (Frankfurt/Main, Germany), Svenja KLINSING, Seyma ALCICEK, Dennis C. THOMAS, Anna-Luisa LUGER, Ulrich PILATUS, Katharina J. WEBER, Joachim P. STEINBACH, Elke HATTINGEN, Pia S. ZEINER, Katharina J. WENGER
14:00 - 15:30 #47852 - PG406 Evaluation of quantitative serial MRI of glioblastoma patients treated with immunotherapy.
PG406 Evaluation of quantitative serial MRI of glioblastoma patients treated with immunotherapy.

The use of immunotherapy in patients with brain tumours has been challenging. The immunotherapy response assessment for neuro-oncology (iRANO) criteria [1] were proposed to address challenges of immunotherapy, but require multiple visits, and often fail to distinguish between progression, pseudoprogression and treatment related enhancement. This work aimed to evaluate serial quantitative MRI biomarkers [2] in patients with glioblastoma (GBM) who received immunotherapy in order to characterise early treatment response.

Eight GBM patients who received immunotherapy on a phase one clinical trial were assessed retrospectively. Each patient had an MRI examination at baseline and multiple post-treatment visits (range 2-6, depending on their evolution whilst on treatment). Cohort demographics are presented in Figure 1. MRI data were acquired between September 2019 and April 2024 using a clinical standard brain protocol including pre- and post-contrast T1w and diffusion-weighted imaging (DWI). Two scanners were employed in the study (1.5T Siemens, 6/8 patients for all of their visits; 3T Philips, 1/8 patients for all of their visits; one patient moved between scanners due to a system upgrade). Three volumes of interest (VOIs) were delineated on the POST-contrast T1w and DWI acquisitions (Figure 1): VOI 1 and VOI 2 delineated the tumoral volumes on T1w and Apparent Diffusion Coefficient (ADC) images, respectively; VOI 3 (drawn on ADC map) included tumour and any surrounding abnormal tissue (e.g. oedema). All delineation was performed in Osirix [3]. The T1w resolution (1x1x1 mm3) was resampled to DWI (1.8x1.8x5 mm3), to allow copying of VOI 1 drawn on POST-contrast T1w data to ADC map. Enhancement fraction (EF) maps were calculated: EF=(POST-PRE)/ (POST+PRE). Median values of EF and ADC were reported for each patient at each visit; volumes of each type of delineation were also recorded. Histograms were used to demonstrate serial changes of EF and ADC. Response was evaluated using iRANO criteria.

Figure 1 depicts the baseline images for all patients (ADC, PRE and POST T1w) demonstrating the tumour heterogeneity of the cohort. Two patients (4 and 7) started the treatment after surgery. A common characteristic of the remaining 6/8 patients is the extended oedema tissue surrounding the tumour (Figure 1). Best response for iRANO is shown for all patients. Overall, 5/8 patients demonstrated a rapid increase of tumoral volume (Figure 4) suggesting no response to treatment. These patients (3 to 7) stayed on treatment for shorter periods (58-201 days) than the responding patients (425-679 days). Large changes of serial ADCs of tumour (VOI2) were experienced by three patients (2, 7 and 8) (Figures 2 and 4 ). Patient 4 also experienced large changes of ADC (Figure 4), but such changes were considered less reliable due to the reduced size of the tumour. Patient 2 (orange line in Figure 4, CR by iRANO) showed a tumour ADC increase for several post-treatment visits (Figure 3) corroborated with stable tumoral volumes (Figure 4) suggesting a good response. At the same timepoints, EF has the largest increase suggesting non-response, which, based on the ADC changes, may be considered pseudo-progression. Until visit 6, patient 8 (grey line in Figure 4, SD by iRANO) demonstrated increased ADC and stable EF and tumour volume, suggesting continuous good response. At visit 6, a large increase in tumour volume and an ADC decrease were observed, indicating non response. This change of treatment response is weakly suggested by the EF biomarker (showing a very small increase). Patient 7 (pink line, PD by iRANO) demonstrated an example of a non-responder with large decrease in ADC and small increase in EF after treatment. (Figures 3 and 4). Over the whole cohort, the serial ADCs of VOI3 (tumour+oedema) experienced smaller change than that of ADCs of VOI2 (tumour).

This descriptive study is limited by the small number of patients, the tumour heterogeneity and the use of two scanners during the trial. Despite these limitations, the ADC biomarker was a better predictor of treatment response than EF in both responders and non-responders. The ADC biomarker was able to identify pseudoprogression for the first two post-treatment visits of patient 2, which was confirmed histologically. Moreover, the early increase in ADC observed for the best responder (patient 2) might suggest ADC as a promising biomarker for early treatment response assessment. This study highlights the need to include quantitative MRI markers in treatment trials in order to prospectively evaluate which are the most informative.

In this descriptive study, ADC biomarker showed promising results in characterising treatment response for patients with GBM above tumour volume and enhancement fraction alone and should be characterised further in a larger cohort of immunotherapy clinical trials.
Mihaela RATA (London, United Kingdom), Philip BENJAMIN, Matthew BLACKLEDGE, Diogo SILVA, Georgina HOPKINSON, Nina TUNARIU, Jessica WINFIELD, Juanita LOPEZ
14:00 - 15:30 #46951 - PG407 The Role of Diffusion-Weighted Imaging in Differentiating Pseudoprogression from Progression in Glioblastomas.
PG407 The Role of Diffusion-Weighted Imaging in Differentiating Pseudoprogression from Progression in Glioblastomas.

Glioblastoma (GBM) is the most common and aggressive primary brain tumor in adults, with a survival rate of 9–18 months [1]. Following treatment, patients may present with either true tumor progression (TP) or pseudoprogression (PsP), a treatment-related effect. Differentiating between TP and PsP is critical for appropriate clinical decision-making[1–3]. While conventional magnetic resonance imaging (MRI) plays a crucial role in brain tumor assessment, it is limited in distinguishing TP from PsP based solely on morphological imaging. Advanced techniques, such as diffusion-weighted imaging (DWI), offer additional information that may aid in this differentiation[2, 4, 5].

This retrospective study evaluated 49 patients diagnosed with GBM who underwent therapy and follow-up MRI scans. On apparent diffusion coefficient (ADC) maps, three regions of interest (ROIs) were drawn on the largest lesion area visible on contrast-enhanced T1-weighted images, and three ROIs were placed in the contralateral normal-appearing white matter. From each ROI, ADC mean (ADCmean), maximum (ADCmax), and minimum (ADCmin) values were extracted. Subsequently, ratios of ADC values between lesion and normal tissue (rADCmean, rADCmax, rADCmin) were calculated.

Patients with TP showed lower ADC values compared to those with PsP. ADCmean, ADCmin, ADCmax, rADCmean, and rADCmax values were significantly different between the TP and PsP groups, while rADCmin did not show significant differences. White matter ADC values were significantly lower than lesion values but did not differ between TP and PsP groups. No significant differences were observed among the three lesion ROIs for ADC metrics within each group. In the white matter, all ADC metrics for the TP group and ADCmax and ADCmean for the PsP group were consistent across ROIs, except for ADCmin in PsP patients. ADCmax (AUC = 88.9%) and rADCmax emerged as the best metrics for distinguishing TP from PsP, with respective cut-off values of 1.822 × 10⁻³ mm²/s and 2.141. Both metrics achieved 83.3% sensitivity, 100% specificity, and 85.4% accuracy.

Our findings highlight that DWI-derived ADC metrics, particularly ADCmax and rADCmax, are valuable biomarkers for differentiating TP from PsP. The significant differences in ADC values reflect underlying pathophysiological variations between true tumor growth and treatment-related changes[2, 4–6]. The high specificity and diagnostic accuracy demonstrated by ADCmax and rADCmax underscore the clinical potential of incorporating DWI analysis into routine GBM follow-up imaging protocols.

DWI provides significant added value in the post-therapy differentiation between TP and PsP in GBM patients. ADC metrics, especially ADCmax and rADCmax, show strong diagnostic performance and can support more accurate clinical decision-making.
Freitas DAVIDE (Porto, Portugal), Nuno ADUBEIRO, Luísa NOGUEIRA, Inês OLÍMPIO
14:00 - 15:30 #47824 - PG408 Multiscale Tumor Characterization Using Diffusion MRI at 7T and 11.7T.
PG408 Multiscale Tumor Characterization Using Diffusion MRI at 7T and 11.7T.

Ultra-high-field magnetic resonance imaging (MRI) provides enhanced spatial resolution and tissue contrast, offering new opportunities for detailed tumor characterization [1]. However, current clinical MRI techniques often fail to reflect the heterogeneous nature of tumor tissue, limiting microstructural assessment [2]. Frequency-dependent multidimensional diffusion-relaxation correlation MRI (ωMDR-MRI) offers a novel framework to resolve sub-voxel features and characterize complex cellular environments. Recent nonparametric metrics further enable consistent assessment of tumor regions across scans and field strengths [3]. This study utilizes ωMDR-MRI at high resolution to improve detection of tissue anisotropy and microstructural features in gliomas, aiming to enhance both surgical precision and broader treatment planning.

A 74-year-old male glioma patient (WHO grade 4, IDH wildtype) was scanned preoperatively with a 1.5T Siemens MRI scanner. Whole tumor, contrast-enhancing tumor, and necrotic regions were segmented using 3DSlicer [4] from pre- and post-contrast T1-weighted MRI (TR = 2000 ms, TE = 2.69 ms, voxel matrix = 256 × 256 × 176, voxel size = 0.9766 × 0.9766 × 1 mm³), as shown in Figure 1A. Segmented voxels were z-score normalized, and histogram properties were analyzed for comparison. For visualization, the patient received Gliolan preoperatively. Following resection (Figure 1B), ex vivo scans were acquired at 7T and 11.7T using Bruker MRI systems, with parameters in Table 1. Among the nonparametric maps derivable from ωMDR-MRI, squared normalized anisotropy was used due to its normalized formulation, enabling robust comparison across field strengths. It was calculated as the squared difference between parallel and perpendicular diffusivities, normalized by their sum, quantifying microscopic diffusion anisotropy from the frequency-dependent diffusion tensor. Five anatomically relevant ROIs were manually defined on ex vivo T1-weighted images: supramarginal zone of white matter (red), supramarginal zone of gray matter (green), tumor border (blue), and tumor regions (purple and yellow). Each ROI was co-registered via affine transformation (ANTs [5]) onto the anisotropy maps from both 7T and 11.7T (Figure 1C). Voxel-level comparisons between field strengths were performed using Wilcoxon signed-rank test with Dunn’s posthoc test. Within-field ROI comparisons were made using the Friedman test followed by pairwise Wilcoxon tests. Kernel density estimation (KDE) visualized signal distributions to highlight differences in central tendency and shape.

Signal intensities from preoperative T1-weighted MRI showed statistical differences across tumor regions (Table 2A). Enhancing tumor areas had the highest mean intensities, followed by whole tumor and necrosis. The whole tumor showed the highest skewness, suggesting heterogeneity, while enhancing and necrotic areas showed lower skewness, indicating more balanced distributions. Pixel intensities in white matter, gray matter, and tumor regions differed significantly between 7T and 11.7T (p<0.01) and within each field strength (p<0.01) (Table 2B). No significant difference was observed between the tumor border and tumor regions at 7T; however, at 11.7T, the border region had significantly lower anisotropy (p<0.01). Signal intensities generally decreased at 11.7T (Figure 2). In white matter, distributions became more symmetric and less flat, suggesting improved homogeneity. Gray matter showed increased skewness and kurtosis, indicating higher variability. The tumor border showed flatter, more asymmetric distributions, suggesting structural heterogeneity. In tumor regions, increased positive skewness at 11.7T pointed to better detection of intratumoral complexity.

We found increased homogeneity in white matter, higher signal variability in gray matter, and clearer structural heterogeneity in the tumor border region at 11.7T. These results highlight the improved sensitivity of ultra-high-field imaging to microstructural features. The tumor region’s positively skewed distribution supports better detection of intratumoral complexity at higher field strengths. Additionally, while 7T did not differentiate between the border and tumor regions in terms of anisotropy, 11.7T revealed significantly lower anisotropy in the border zone, suggesting increased sensitivity to peritumoral heterogeneity. These findings emphasize the potential of ultra-high-field imaging to enhance tissue characterization in challenging regions. Future steps of this multiscale study will include microscopy image integration to assess cellular and subcellular structures, offering a refined understanding of the tumor microenvironments.

This study demonstrates that ultra-high-field MRI at 11.7T provides improved sensitivity to tumor tissue microstructure and may support more accurate diagnosis and treatment planning in gliomas.
Buse BUZ-YALUG (Espoo, Finland), Omar NARVAEZ, Minna NIITTYKOSKI, Ville LEINONEN, Susanna RANTALA, Jussi TOHKA, Alejandra SIERRA
14:00 - 15:30 #46035 - PG409 Probing tumor microstructure in soft-tissue sarcomas using quantitative MRI combined with image-guided biopsy and digital pathology.
PG409 Probing tumor microstructure in soft-tissue sarcomas using quantitative MRI combined with image-guided biopsy and digital pathology.

Soft-tissue sarcomas (STS) are rare tumors with significant inter- and intra-tumor heterogeneity. Consequently, there is a need for imaging methods to guide biopsy[1], targeting heterogeneous components, and for evaluation of novel therapies. MRI enables quantitative assessment of tumors but better understanding of the link between quantitative MRI and tumor microstructure is required. Developments in image-guided biopsy[2] provide an opportunity to target biopsy sites using robotic guidance combined with quantitative MRI, while advances in digital pathology including multiplex immune-fluorescence (mIF) enable rapid characterization and quantification of cells in biopsy samples[3]; combining these techniques provides an opportunity to evaluate quantitative MRI parameters and corresponding tumor microstructure. The aims of this study are (a) develop a workflow combining image-guided biopsy with digital pathology in STS; (b) use this methodology to evaluate correlation between apparent diffusion coefficient (ADC) and numbers of cells, and between enhancement fraction (EF) and endothelial cells.

Patients were recruited at one centre as part of a prospective study[2] with written consent for use of tissue samples. Patients underwent an MRI examination before biopsy (1.5T MAGNETOM Sola, Siemens Healthineers, Forchheim, Germany) described in Fig.1. Antibodies were optimized for immunohistochemistry (IHC), multiplex positions and validated with single-plex IF (Opal TSA system, Akoya). Controls were used for IHC and IF optimizations. Two panels of mIF were optimized. Panel A was used to identify tumor cells, T-cells and B-cells. Panel B was used to identify macrophages, endothelial cells and cancer-associated fibroblasts (CAFs). Panels are described in Fig.2. Whole-slide images were generated using a Leica Bond autostainer and mIF images were acquired using a PhenoImagerHT (Akoya). Image analysis was done using HALO image software (IndincaLabs). Panels A and B were analysed for each biopsy sample to output the total number of cells and number of tumor cells, tumor-infiltrating lymphocytes (TILs=T-cells+B-cells), macrophages, endothelial cells and CAFs per unit area. Correlation between cell types was assessed using Pearson correlation coefficient. Correlation between ADC or EF and number of cells per unit area was assessed initially using Pearson correlation coefficients across all samples. Further analysis used a linear mixed effects model to evaluate the effect of each cell type on ADC, with number of cells per unit area as fixed effects (after log transformation and normalization) and patients as a random effect (fitlme, Matlab2021a). The variance partition coefficient (VPC) was used to assess inter-patient variation in ADC[4].

32 biopsy samples from 11 patients (2-3 samples per patient) were included. Median ADC across all samples was 1570x10-6mm2/s (range (656-2830)x10-6mm2/s). Median/range of each cell type are shown in Fig.3. Correlation between number of each cell type per unit area was weak-moderate (r=0.2-0.6) except between macrophages and CAFs, which were strongly correlated (r=0.7). ADC showed negative correlation with total number of cells per unit area and negative correlation with number of tumor cells, macrophages and CAFs per unit area; correlation between ADC and TILs or endothelial cells was weak (Fig.3). Mixed effects modelling included tumor cells, macrophages and CAFs (excluding TILs and endothelial cells). Number of CAFs per unit area had a significant effect on ADC (p=0.01) but numbers of macrophages and tumor cells did not have significant effects (p=0.7, p=0.9). VPC was <0.1. No correlation was observed between EF and number of endothelial cells per unit area (Fig.4).

This study demonstrated a workflow combining quantitative MRI, image-guided biopsy and digital pathology for validation of imaging biomarkers and investigation of tumor heterogeneity. Correlation between ADC and total number of cells per unit area confirms that ADC is inversely related to cellularity in STS. However, the significant effect of CAFs on ADC in the mixed effects model shows that interpretation of ADC estimates depends on tumor stroma, not solely on tumor cells. The small VPC suggests inter-patient variation is small compared with total variation across all samples. The absence of correlation between EF and endothelial cells is consistent with previous studies[5] suggesting that enhancement depends on the function of the tumor vasculature rather than presence of vessels. A limitation of the study was the small sample size. It was not possible to analyse subtypes separately as 9/11 tumors were liposarcomas; future studies will investigate other subtypes.

ADC is correlated with total number of cells per unit area but the number of CAFs per unit area is also significant indicating the importance of stroma in STS. This study demonstrates a workflow combining quantitative MRI and image-guided biopsy with digital pathology in STS.
Jessica M WINFIELD (London, United Kingdom), Edward W JOHNSTON, Amani ARTHUR, Geoff CHARLES-EDWARDS, Paul HUANG, Robin L JONES, Manuel SALTO-TELLEZ, Khin THWAY, Brandon WHITCHER, Tom LUND, Christina MESSIOU
14:00 - 15:30 #47053 - PG410 Multi-regional, automatic and volumetric temperature regulation during in vivo MRI-guided laser-induced thermotherapy (MRg-LITT).
PG410 Multi-regional, automatic and volumetric temperature regulation during in vivo MRI-guided laser-induced thermotherapy (MRg-LITT).

Mini-invasive MR-guided Laser Interstitial Thermal Therapy (LITT) is used to treat tumors in various organs (brain [1], liver [2], prostate [3]) using one or more optical fibers [4–6]. However, clinical procedures often rely on predetermined laser power and exposure time, which can lead to the target area being over- or under-heated. A multi-probe laser device is presented, whose output power is automatically regulated in real-time from MR-temperature maps to force tissue temperature to follow a predefined desired temperature-time profile.

LITT device: A prototype multichannel LITT system (Alphanov, France) was connected to three independent optical fibers (400 µm diameter), each terminated by a diffuser tip (2 cm length, 1.8 mm diameter). Fibers were inserted into the leg muscle of an anaesthetized pig (~35 kg, ethics approved), forming a triangle with ~5 mm spacing. Each fiber was independently connected to a 976-nm laser diode that was controllable and interfaced with the thermometry pipeline [7]. MR-Imaging workflow: The procedure was performed on a 1.5 T clinical scanner (Avanto, Siemens, Germany) using a 4-channel surface coil placed above the leg and two elements embedded into the MRI bed coil) for signal reception. The acquisition protocol included: (1) anatomical imaging for probe positioning, (2) real-time MR thermometry during treatment, and (3) post-ablation assessment. Anatomical scans were acquired using a 3D MPRAGE (TI=1100 ms, TE=3.3 ms, TR=2000 ms, FA=15°, voxel size: 1.17×1.17×1 mm, FOV: 300×253×120 mm), before and after probe insertion into the muscle. A stack of 10 slices was positioned over the probe tips to perform PRFS-based MR-thermometry [8]. Phase images were acquired at 1 Hz using a single-shot EPI [9] (TE=21 ms, TR=1000 ms, FA=50°, voxel size: 1.56×1.56×3 mm, GRAPPA=2, partial Fourier=6/8, bandwidth=1150 Hz, FOV: 200×200 mm). Thermal maps were computed in real time and displayed on the fly ( Certis Therapeutics software). After completion of the thermal treatment, non-perfused volumes were visualized from 3D T1-weighted images (TE=2.16 ms, TR=4.49 ms, FA=10°, voxel size: 1.19×1.19×1.2 mm, FOV: 308×380×120 mm) acquired one minute after intravenous injection of gadoteric acid injection (0.5 mmol/kg). Regulation algorithm: The regulation algorithm was implemented in Gadgetron to automatically control heat deposition in real-time in several Regions of Interest (ROIs) centered on each laser. Input parameters: (1) the temperature-time profiles defined for (2) each ROIs (3x3x10 pixels each) positioned around each diffuser, (3) tissue thermal parameters (absorption and thermal diffusivity) determined from a calibration step, and (4) the heating pattern of each laser source. A PID controller combined with the Bio-Heat Transfer Equation was implemented [10]. At each acquired temperature stack [11], the power of each source was updated. Calibration step: Before temperature regulation, a constant power of 6 W was sequentially applied under MR-thermometry monitoring during 30 s on each diode, interleaved with a cooling period of 50 s, and the hottest voxel in temperature maps associated to each fiber was automatically detected and served as input for automatic ROI positioning. The temperature fitting method based on the BHTE equation was used to estimate the absorption and thermal diffusivity (D) [10], as well as the source function Si [11].

Figure 1 shows an example of 3D scan performed after inserting the laser probes into the muscle. The stack of slices for MR-thermometry is indicated by blue rectangles. Figure 2 shows examples of automatic temperature regulation with (Top) an identical target heating profile applied to the 3 ROIs (+30°C, 275 s); and (Bottom) different heating profiles applied on 2 ROis: a single plateau (+25°C, 180 s) applied on the first ROI, and 2 plateaus of +15°C and +30°C on the second ROI, both lasting 60 s. Table 1 summarizes metrics to evaluate the regulation algorithm performances. For both experiments and all ROIs, the mean ± std of the difference between target and measured temperatures remained below 0.3 ± 1.7 °C. Figure 3 shows the temperature and thermal dose images for all slices, illustrating the possibility to modulate the size and shape of the treated volume.

The MR-thermometry based automatic regulation is precise enough to force the temperature to follow predefined profiles during multi-probe LITT.

This multi-region control of heat deposition enables conformable therapy and may prevent overheating of critical structures in order to increase MRI-controlled treatment efficiency and safety.
Manon DESCLIDES (Bordeaux), Valéry OZENNE, Pierre BOUR, Thibaut FALLER, Guillaume MACHINET, Christophe PIERRE, Julie CARCREFF, Stéphane CHEMOUNY, Bruno QUESSON
Poster hall
15:30 TIME FOR A BREAK - Coffee and refreshments will be available at the cash bar.
15:40

"Friday 10 October"

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A25
15:40 - 17:10

FT2 Oral - Brain Connectivity, Structure, and Biomarkers

Chairpersons: Lennart BEDARF (PhD Student) (Chairperson, Basel, Switzerland), Wafaa ZAARAOUI (Chairperson, Marseille, France)
15:40 - 15:50 #45997 - PG022 Structural Brain Pathways Linking White Matter Hyperintensities to Pain Sensitivity in the Rotterdam Study.
PG022 Structural Brain Pathways Linking White Matter Hyperintensities to Pain Sensitivity in the Rotterdam Study.

Despite affecting one in five European adults and ranking as the top cause of disability [1], chronic pain (CP) severity often poorly correlates with tissue damage, pointing to central neuroplastic mechanisms. While prior studies have reported associations between structural brain changes—particularly in white matter—and pain [2], the causal pathway from white matter change to altered pain perception remains unclear. Here, we test whether white matter hyperintensities (WMH) alter pain sensitivity by disrupting tract microstructure and inducing cortical atrophy in connected regions (Figure 1).

We analyzed data from 1,447 participants (mean age 73 ± 6 years), in the Rotterdam Study, a large population-based cohort in the Netherlands. Pain sensitivity was assessed using the cold pressor test (CPT), where participants submerged their hand in 3°C water for as long as tolerable, up to a maximum of 120 seconds (Figure 2). This provided a quantitative measure of individual pain sensitivity. Available brain MRI data included T1-weighted structural images, fluid-attenuated inversion recovery (FLAIR) sequences, and diffusion tensor imaging (DTI). Cortical volume was derived from the T1-weighted images using FreeSurfer. DTI data were preprocessed using the FSL pipeline [3] to derive fractional anisotropy (FA) and mean diffusivity (MD), and to generate a tractography-based template defining 27 major white matter tracts. We calculated mean FA and mean MD values within each predefined tract. Segmented WMH volumes, obtained using the PGS pipeline [4]—a trained deep learning-based approach—were then mapped onto the predefined tracts. We conducted tract-wise regression analyses to examine associations between WMH burden, DTI metrics, cortical volume, and CPT performance. Mediation analyses were performed to identify indirect pathways linking WMH to altered pain sensitivity through DTI or cortical changes. Covariates included age, sex and intracranial volume.

Among the 1,447 participants, 404 reached the maximum test duration of 120 seconds, while 1,043 withdrew their hand earlier. Among those who withdrew early, the mean CPT duration was 34.5 ± 23.0 seconds (Figure 2). WMH were detected in 20 out of the 27 predefined tracts. Regression analysis showed higher WMH burden within all these 20 tracts was significantly associated with reduced FA values (Figure 3). Lower FA was further linked to greater pain sensitivity, particularly in the left anterior thalamic radiation (ATR_L) tract (multiple testing corrected p < 0.004) and the right medial lemniscus (ML_R) tract (multiple testing corrected p < 0.030) (Figure 4). In addition, higher WMH burden in the ATR_L tract was directly associated with higher pain sensitivity (multiple testing correction p<0.006) (Figure 4). Mediation analysis confirmed that 78% of the effect of WMH in the ATR_L tract on pain perception was mediated by FA reduction in the same tract (average causal mediated effect (ACME) p < 2e-16), while the direct effect was not statistically significant (average direct effects (ADE) p = 0.630). Mediation analysis further supported a second pathway: WMH in the left corticospinal tract (CST_L) → cortical degeneration in the left postcentral gyrus → increased pain sensitivity, where 14% of the total effect mediated through cortical degeneration (ACME p<0.008), while the direct effect was not statistically significant (ADE p = 0.122).

These results are the first to map tract-specific WMH impacts on pain sensitivity in a population cohort. Our findings suggest that WMH contribute to increased pain sensitivity through two mechanisms: disruption of white matter tracts and degeneration of cortical regions connected to these tracts. The ATR tract is known to be involved in cognitive, emotional and executive functions, whereas the CST is associated with sensory-motor integration and feedback. They appear particularly susceptible to WMH-related changes that alter pain processing. Our findings are further supported by previous studies that have identified these tracts in the context of pain and sensory. For example, lower FA in the ATR tract has been reported in individuals with interstitial cystitis/bladder pain syndrome, a chronic pain condition [5]. In addition, the postcentral gyrus, which is connected to CST, is known to be directly involved in processing touch sensations [6]. These existing findings align with our observations of pain sensitivity associated with WMH burden in sensory pathways. Together, our results support the notion that vascular pathology in white matter may influence central pain perception through tract-specific mechanisms, highlighting potential targets for future research and clinical intervention.

Our findings contribute to a more detailed understanding of the neurobiological mechanisms underlying pain and offer a structural framework for future multi-cohort studies and collaborative meta-analytic investigations.
Xianjing LIU (ROTTERDAM, The Netherlands), Lieke KUIPER, Torgil VANGBERG, Meike VERNOOIJ, Christopher NIELSEN, Joyce VAN MEURS, Gennady ROSHCHUPKIN
15:50 - 16:00 #47958 - PG023 Toward direct Mapping of the Human Pallido-Subthalamic Pathway In Vivo at 3T.
PG023 Toward direct Mapping of the Human Pallido-Subthalamic Pathway In Vivo at 3T.

The subthalamic nucleus (STN) is a key integrative hub of basal ganglia circuits (Nambu 2011; Hamani 2004). However, the direct connection from the globus pallidus externus (GPe) to the STN – the pallido-subthalamic pathway – remains poorly characterized in humans. Ex vivo 11.7T diffusion MRI and histology have revealed a complex, topographically organized projection along this pathway, but mapping it in vivo at 3T is challenging due to lower spatial resolution and crossing fibers in the subthalamic region (Coenen 2022). Here, we leverage ex vivo findings to guide in vivo 3T tractography. We acquired diffusion MRI data from four healthy human subjects at 3T to test whether the ex vivo connectivity pattern can be reproduced in vivo. The ultimate goal is to enable direct in vivo mapping of the pallido-subthalamic tract, which could inform clinical interventions such as deep brain stimulation (DBS).

Four healthy volunteers were scanned on a 3T CIMA.X (Siemens Healthineers) equipped with ultra‑intense Gemini gradients (Gmax = 200 mT m⁻¹, slew = 200 T m⁻¹ s⁻¹) and a 64‑channel head coil (CENIR, Paris). The protocol combined a 3‑D T1‑weighted M2PRAGE and a multi‑shell diffusion acquisition using the CMRR multiband 2‑D EPI sequence (TE = 53 ms, TR = 2600 ms, multiband = 4, iPAT = 2, partial‑Fourier = 6/8, flip = 90°, EPI factor = 104). Diffusion sampling comprised 5 b0, 65b = 1500, 65 b = 3000, 40 b = 4000, 40 b = 6000 s mm⁻² voxel size = 1.5 mm³; this DWI sequence duration was 10 min 08s and it was repeated twice with a reversed phase encoded direction . For comparison, a post‑mortem female brain (78 y) was immersion‑fixed in 4 % PFA (8 d, 4 °C) and imaged on an 11.7 T Bruker BioSpec (72 mm transceiver). A T2* (110 µm) and a multi‑shell diffusion scan (7 b = 1000, 29 b = 4000, 64 b = 10000 s mm⁻², 0.22 mm³; TR/TE = 250/25.2 ms; 61 h) were acquired. All diffusion data underwent denoising, Gibbs‑ringing removal, distortion/motion/eddy correction (Topup & Eddy, FSL) and bias‑field correction; NORDIC‑PCA was additionally applied to the 3 T data (Moeller 2021). Multi‑shell multi‑tissue CSD produced fibre‑orientation densities. Probabilistic tractography (MRtrix3 iFOD2; FA > 0.07; length 1.1–25 mm) was seeded bidirectionally in the GPe; streamlines entering the internal capsule were excluded. Resulting tracts were classified into limbic, associative and sensorimotor subdivisions using a histology‑derived GPe atlas (Bardinet 2009) and mapped to their corresponding STN territories (Tournier 2019).

In all four subjects, tractography delineated an ascending pallido-subthalamic tract from the GPe to the STN (bypassing the GPi), consistent with ex vivo anatomy. The STN projections were organized similarly in vivo and ex vivo: limbic fibers terminated in anterior STN, motor fibers in posterior-ventral STN, and associative fibers in central STN. The ex vivo data showed only a slightly broader sensorimotor termination area, attributable to its higher resolution. Fiber orientation density (FOD) analysis confirmed pronounced crossing-fiber configurations where the pathway traverses the internal capsule. Multi-shell tractography resolved these crossings, enabling clear identification of the pathway within the dense internal capsule. The agreement between in vivo and ex vivo patterns across subjects demonstrates the feasibility of mapping this pathway in vivo at 3T.

This study provides the first in vivo visualization of the human pallido-subthalamic pathway on a 3T MRI. Our tractography reproduced the limbic, associative, and sensorimotor segregation of GPe–STN fibers previously seen only ex vivo. These results show that advanced diffusion MRI at 3T can map small, complex subcortical tracts in vivo (Coenen 2022). The close correspondence between in vivo and ex vivo connectivity patterns indicates that the STN’s functional territories are preserved in vivo. Minor differences, such as a slightly larger sensorimotor territory ex vivo, likely reflect the ultra-high resolution and absence of motion in the postmortem data. By showing that a 3T scan can resolve this pathway, we lay groundwork for clinical translation. In neurosurgical planning, patient-specific tractography of the pallido-subthalamic pathway could enhance DBS targeting by revealing individual fiber anatomy. Future studies in patients (e.g., Parkinson’s disease) should examine how variations in this pathway relate to symptoms and treatment outcomes.

We mapped the pallido-subthalamic tract in vivo at 3T, replicating the three-part (limbic, associative, motor) projection pattern observed ex vivo. Despite the lower resolution of in vivo imaging, the key features of this pathway were identifiable in all subjects. This demonstrates that high-quality diffusion MRI at 3T can visualize detailed subcortical connections in living humans, potentially improving precision in neurosurgical targeting and therapy for basal ganglia disorders.
Nicolas TEMPIER (Paris), Mélanie DIDIER, Christophe DESTRIEUX, Mathieu SANTIN, Chantal FRANÇOIS, Carine KARACHI, Eric BARDINET
16:00 - 16:10 #46451 - PG024 Detailed Investigation of the IhMT Anisotropy in Ex Vivo Spinal Cord Under Sample Reorientation.
PG024 Detailed Investigation of the IhMT Anisotropy in Ex Vivo Spinal Cord Under Sample Reorientation.

Magnetization transfer (MT) and inhomogeneous MT (ihMT) are sensitive to motion-restricted macromolecules associated with residual dipolar couplings (RDCs) and have been extensively exploited to probe myelin-lipid bilayers of white matter (WM) tracts [1,2]. RDCs between ‘non-aqueous’ protons in an approximately cylindrical arrangement, such as WM fibers, are intrinsically anisotropic and have the potential to significantly modulate (ih)MT contrast in in vivo MRI. In previous work, Pampel et al. were able to interpret the anisotropy of MT using a cylindrical fiber model [2]. Recent studies investigating the orientation dependence of ihMT in model systems [1], and in WM in vivo [3-5] and ex vivo [6,7] have yielded conflicting observations. IhMT anisotropy effects have been shown to be dependent on offset frequencies (ΔRF) in ex vivo spinal cord, consistent with changes in the cylindrical absorption lineshape [6,7]. A full explanation of anisotropy effects remains elusive, given the multiple potentially orientation-dependent parameters, their mutual correlations, and the scope of experimental datasets required for detailed analysis. To address this research gap, measurements were performed on ex vivo spinal cord with a randomised variation of the fiber-to-field angle (θFB) to reveal the 'true' anisotropy of ihMT.

A white matter section was extracted from fixated porcine spinal cord (post-mortem interval of 2-3 hours), washed in PBS, and placed in a 5-mm NMR tube (filled with Fomblin). MR measurements were conducted at 3T (MAGNETOM Sykrafit) using a custom-made TxRx Helmholtz coil at ~35-36°C [8]. Acquisitions were performed with a 1D CPMG readout (0.483 mm nominal resolution, 80 echoes, echo-spacing 4 ms, 200 μs composite refocusing pulse) following a rectangular pulse (20 μs), allowing for future planned ‘four-pool’ model analyses [9, 10]. Here, the focus is limited to the intensity of the first echo as well as on the ihMT-related experiments (acquired after a train of 2-ms Gaussian pulses, NRF=300), including: (I) ‘ihMT sets’: no MT preparation (MToff), single-sided (MT+, MT–) and dual-sided irradiation with alternating offset (MTalt) or cosine-modulated pulse (MTcos) for different offsets (ΔRF), (II) z-spectra acquisitions including (MT+, MT–, MTalt, MTcos). A central ROI (11 voxels) was selected for the analysis. By not accounting for the multi-exponential ‘T2-decay (due to the presence of myelin water and intra/extracellular water)’, the analysis can be restricted to a single ‘aqueous’ compartment - to a first approximation. A two-pool model (2PM) with a dipolar reservoir is used to keep the simultaneous fit (using custom routines [2,11,12]) of the z-spectra (for ΔRF >2 kHz, 1716 data points for 10+1 orientations) as simple as possible, focusing on the ability of the proposed ‘fiber model’ to explain the ihMT anisotropy.

The model-free analysis of the z-spectra (Fig. 1) shows (indirectly) the orientation-dependent lineshape changes of the non-aqueous pool. An unambiguous orientation dependence was observed for ihMT ratios, with remarkably strong orientation-dependent variations and strikingly different trends as a function of θFB observed for different ΔRF, e.g., for θFB= 0° max for ΔRF<15 kHz vs. min for ΔRF≥20 kHz (Fig. 2). Thus, statements about ‘higher ihMTR in fibers running parallel to B0’ [3,4] apply only to certain experimental conditions (e.g., ΔRF < 15 kHz here). Further insight into the anisotropy of (ih)MT can be obtained by the degree of anisotropy for each offset ΔRF (Fig. 3). A novel finding is the ‘pattern’ with two maxima for ihMTR anisotropy (Fig. 3B). Model 1 used a set of 7 isotropic parameters with a fit of T2B as a function of θFB, equipped with a super-Lorentzian lineshape (Fig. 4A-C). The general trend of the experimentally observed ihMTR anisotropy could be reproduced, suggesting that most of the orientation dependence for (ih)MT is related to changes in the absorption lineshape although other spin system parameters may also show anisotropy [12]. In model 2, the number of fit parameters is reduced by more than half, while the orientation dependence of the lineshape is derived from the ‘cylinder model’ for a single axon, resulting in a qualitative agreement of ihMTR anisotropy with the experimental trend (Fig. 4D-F). The overestimated anisotropy effect of model 2 is somewhat to be expected, as fiber dispersion effects have not yet been considered.

A strong dependence of ihMTR(θFB) on ΔRF could undoubtedly be confirmed in fixed spinal cord as a model for highly ordered WM tracts. The novel finding of a characteristic ‘pattern’ of ihMTR anisotropy with two distinct maxima for different offsets will provide a benchmark for future model evaluation. Initial results obtained from a simple 2PM with a ‘cylindrical lineshape’ are in qualitative agreement, indicating the potential to derive unbiased ihMT-related metrics when accounting for θFB, e.g. by combining ihMT and and DWI experiments.
Niklas WALLSTEIN (Marseille), André PAMPEL, Guillaume DUHAMEL, Roland MÜLLER, Carsten JÄGER, Harald E. MÖLLER, Olivier M. GIRARD
16:10 - 16:20 #46774 - PG025 Interpretable Machine Learning Model for Characterizing Magnetic Susceptibility-based Biomarkers in First Episode Psychosis.
PG025 Interpretable Machine Learning Model for Characterizing Magnetic Susceptibility-based Biomarkers in First Episode Psychosis.

Recent publications highlighted the changes in brain iron concentrations with a co-factor in dopamine pathways in psychosis patients (1). Insights about the quantification of iron concentrations in the brain are now available through effective transverse relaxation rate (R2*) and quantitative susceptibility mapping (QSM), calculated from multi-echo gradient-echo (GRE) sequences (2). As iron is the cofactor in neurotransmitter biosynthesis, the Grey Matter (GM) nuclei functions are susceptible to changes in iron concentration. Considering the limited number of dopamine pathways (nigrostriatal and tuberoinfundibular pathways) retrieved from the QSM image, it is possible to refine disease monitoring and improve patient risk stratification (3). The present study aims to pinpoint potential predictive biomarkers derived from QSM and R2* for individuals experiencing first-episode psychosis (FEP), along with their response to antipsychotic treatment.

3D multi-echo GRE and T1-weighted FLAIR of 52 healthy volunteers (HV) and 78 FEP patients (52 RS and 24 TRS) were acquired in a 3T Philips Ingenia MRI scanner. QSM reconstruction was performed as in (4) using Variable Sophisticated Harmonic Artifact Reduction for Phase data (vSHARP) (5) and FAst nonlinear Susceptibility Inversion (FANSI) toolbox (6). Images were registered and normalized to an NMI space. Twenty-two regions of interest (ROI) of deep GM and subcortical brain nuclei were segmented using the Multicontrast PD25 version 2019 (7). We calculated each ROI's mean QSM and R2* values, as shown in Figure 1. This study developed two machine learning models to analyze brain regions with QSM and R2* values, distinguishing between HV and FEP patients, responders (RS), and treatment-resistant (TRS) patients. The models were built using Python and employed RF with Sequential Forward Selection (SFS) for feature selection, hyperparameter optimization through grid search, and 10-fold cross-validation. SHAP values were used for model interpretation, revealing feature importance (8).

The classification results for the HV vs. FEP classification (Figure 2), four features—right nucleus accumbens R2*, left amygdala R2*, left nucleus accumbens R2*, and right thalamus QSM—yielded an accuracy of 76.48 ± 10.73%. For RS vs. TRS, four features—right hippocampus R2*, left caudate R2*, left putamen R2*, and left amygdala QSM—achieved 76.43 ± 12.57% accuracy. After applying feature selection, treeSHAP analysis was conducted to identify the most important predictors in the model, shown in Figure 3. The SHAP summary plots showed that the key features for HV vs. FEP classification were right nucleus accumbens R2*, left amygdala R2*, left nucleus accumbens R2*, and right thalamus QSM. For RS vs. TRS, the important features were left amygdala QSM, right hippocampus R2*, left caudate R2*, and left putamen R2*. Both classifications use similar features, leading to confusion between classes. The SHAP values indicate the contribution of each feature to the model's predictions, with lower right nucleus accumbens R2* values increasing the likelihood of being classified as FEP, while higher left amygdala R2* values favor HV classification. Figure 4 presents the brain areas found as disease predictors by treeSHAP per map and classification problem.

This study identified the most relevant QSM and R2* features for predicting First-Episode Psychosis (FEP) and treatment response using Random Forest (RF) models. Two classification problems were addressed: HV vs. FEP and RS vs. TRS. Feature selection reduced the number of input variables while maintaining model performance, achieving accuracies of 76.48% for HV vs. FEP and 76.43% for RS vs. TRS. SHAP analysis was used for global and local interpretability, revealing the top predictive features, including the right nucleus accumbens R2* and left amygdala QSM. The study emphasized the complementary nature of QSM and R2* in understanding tissue magnetic properties, particularly regarding brain iron content linked to schizophrenia. Despite some limitations, such as small sample sizes and the use of classical ML algorithms, the findings support the relevance of iron-sensitive imaging features in the context of psychosis.

The study demonstrated the potential of QSM and R2* imaging biomarkers for early detection of treatment-resistant schizophrenia, which could help improve clinical outcomes. Future research will explore advanced deep-learning methods and larger datasets to enhance classification performance and model generalizability.
Pamela FRANCO, Cristian MONTALBA (Santiago, Chile), Raúl CAULIER-CISTERNA, Carlos MILOVIC, Alfonso GONZÁLEZ, Juan Pablo RAMIREZ-MAHALUF, Juan UNDURRAGA, Rodrigo SALAS, Nicolás CROSSLEY, Cristian TEJOS, Sergio URIBE
16:20 - 16:30 #47675 - PG026 Validation of fetal brain 3D slice-to-volume registration (SVR) in detecting the cause of antenatal ventriculomegaly confirmed by neonatal scan.
PG026 Validation of fetal brain 3D slice-to-volume registration (SVR) in detecting the cause of antenatal ventriculomegaly confirmed by neonatal scan.

Detecting subtle anatomical abnormalities in fetal brain MRI is particularly challenging due to motion artefacts and the limited spatial resolution of 2D slices[1]. Motion artefacts caused by fetal movement and maternal breathing can result in inconclusive or inaccurate antenatal diagnoses, leading to unnecessary stress to patients and termination of pregnancy[2]. To address these limitations, slice-to-volume registration (SVR) software has recently been developed. SVR aligns multiple 2D MRI slices into a single, high-resolution 3DSVR[3]. The reconstructed 3DSVR can be reoriented in any plane via multiplanar reconstruction (MPR), thus improving diagnostic accuracy and confidence[2]. To date, validation studies have focused mainly on comparing biometrical measurements and radiological assessment between 2D and 3DSVR, showing the superiority of 3DSVR[4,5]. However, there is a lack of studies confirming pathological findings on postnatal imaging and/or outcomes. This study seeks to address this gap by investigating the effectiveness of 3DSVR, compared with 2D, for identifying anatomical abnormalities in fetal MRI and assessing its impact on image quality in a cohort of fetuses diagnosed with antenatal ventriculomegaly confirmed postnatally.

Subjects: A cross-sectional study was conducted with 20 pregnant participants diagnosed antenatally with ventriculomegaly. All had both fetal and neonatal MRI scans available. Median gestational age(GA)at fetal MRI was 28w+2d (21w+1d/33w+3d); neonatal MRI was performed at median corrected GA of 38w+1d (32w+5d/42w). Acquisition Protocols: Fetal and neonatal MRI was acquired using standard clinical protocols. Fetal imaging was performed using 1.5T Siemens. All fetuses underwent T2-weighted HASTE (half Fourier single-shot fast spin echo) with the following parameters: FOV= 320x320mm, voxel size= 1x1mm, slice thickness=3.5mm, gap= 0.125mm, TR/TE=1170ms, ip angel=90/110 (excitation/refocus) in 3 anatomical planes (15 2D stacks on average, range 8-31).Neonatal imaging was performed on 3 T Philips: Achieva-dStream: 3DMPRAGE T1 weighted images: FOV: 210x160x120mm, voxel size: 1x1x1mm, TR/TE 17ms/4.1ms, TI 1465ms. 3DSVR processing: 2DT2w HASTE stacks were reconstructed into 3D high-resolution volumes using NiftyMIC software (v0.8)[5]. Stacks with severe motion artefacts were visually identified and excluded. On average, 12 2D stacks were used (range 7-25). After reconstruction, NIFTI 3DSVR data were converted to DICOM and uploaded to a Philips Carestream workstation, identical to the local PACS workstation, for the assessment. Analysis: - Ventriculomegaly was assessed by a neuroradiology consultant and trainee with over 15 and 4 years of experience, respectively, using fetal 2D T2-weighted HASTE, fetal 3DSVR, and confirmed with 3D T1 neonatal scans. - The visibility of 11 brain structures was evaluated using a 3-point scale: 0(not visible), 1(partially visible), and 2(clearly visible). The structures assessed included the posterior limb of the internal capsule (PLIC), pituitary stalk, optic nerves, olfactory bulbs, hippocampi, cortical grey-white matter differentiation, cortical folding, brainstem, deep grey-white matter contrast, and white matter lamination. - Image quality was assessed by scoring the signal-to-noise ratio (SNR) on a 3-point scale: 0 (poor), 1 (medium), 2 (good). Motion artefacts were rated as 0 (no motion), 1 (mild motion), and 2 (severe motion). The Wilcoxon signed-rank test was used for statistical analysis.

Of 20 subjects, eight had aqueduct stenosis identified on neonatal MRI. This was conclusively confirmed on 3/8 and 8/8 on 2D and 3DSVR, respectively, on fetal scans (Fig 1). There were no differences in image findings for the remaining ventriculomegaly diagnoses. Fetal 3DSVR achieved higher visibility scores in 6 of the 11 rated brain structures (Fig 2). The statistically significant difference in mean score between 2D/3D was in PLIC (0.65vs1.85, p<0.001), Sylvian aqueduct (1.05vs1.9, p<0.001), olfactory bulbs (0.90vs1.70, p<0.01) and deep grey-white matter contrast (0.9vs1.9, p<0.01). Optic nerves and pituitary stalk showed no difference. The hippocampi, brainstem, and cortical folding were similar (Fig 3). Fetal 3DSVR outperformed 2D in image quality assessment. SNR improved 35% of fetal scans (7/20) and motion artefacts were reduced in 25% of fetal scans (5/20)(Fig 4).

On the antenatal ventriculomegaly cohort, fetal 3DSVR has demonstrated potential for enhancing the diagnosis of aqueduct stenosis by providing better visualisation and improved image quality in fetal brain MRI. Furthermore, the diagnosis was in agreement with neonatal ground-truth scans.

This study offers evidence for integrating 3DSVR into clinical practice for antenatal assessment of ventriculomegaly and its use in clinical management. Future studies will expand on this work by validating 3DSVR in other fetal brain pathologies, further establishing its utility across various structural abnormalities.
Weaam HAMED (London, United Kingdom), Latha SRINIVASAN, Giles KENDALL, Leigh DYET, Donald PEEBLES, Anna L DAVID, Kelly Pegoretti BARUTEAU, Magdalena SOKOLSKA
16:30 - 16:40 #47933 - PG027 Reduced cerebral glucose metabolism in a mouse model of early-stage Alzheimer's disease detected by dynamic MR spectroscopy.
PG027 Reduced cerebral glucose metabolism in a mouse model of early-stage Alzheimer's disease detected by dynamic MR spectroscopy.

Alzheimer’s disease (AD) in humans and mouse models is characterized by decreased glucose uptake in the brain, according to FDG-PET studies[1]. In contrast, some FDG-PET investigations report no or increased FDG uptake both in human AD [2] and in mouse models [3,4]. This apparently hypermetabolic state occurs in the early-phase of AD, i.e. in mild cognitive impairment and young AD model mice [2,3,4,5,6]. To understand these discrepancies, additional methods dedicated to the in vivo assessment of glucose metabolism are needed. Deuterium MR Spectroscopy (DMS) and Imaging (DMI) using deuterated compounds have emerged as alternatives to FDG-PET[7,8,9]. These methods not only allow monitoring the uptake of glucose, but also absolute quantification and direct assessment of downstream metabolic conversions. This study aims to investigate glucose metabolism by dynamic DMS in the brain of an early-stage disease model, the APP/PS1 mouse at 6 months of age, which was shown to have increased FDG uptake [3,6].

We investigated 7 APPS/PS1 mice and 6 wild-type (WT) littermates (6 months old, weighting ~30 gram). Animals were anesthetized with isoflurane (in O2/air) and maintained at 37°C. Experiments were performed at 11.7T (BioSpec, Bruker BioSpin). Mice were positioned prone inside a volume 1H coil for background imaging and shimming. A custom-built 2H surface coil (12mm Ø; 76.8MHz) was positioned on the mouse head (Fig. 1). Baseline pulse-acquire 2H MR spectra were collected with TR=500ms and 300 averages (acquisition time 2:30 min). Next, the mice were infused in a tail vein with a 2 s bolus of 1.3g/kg deuterated glucose in saline. Subsequently 36 consecutive 2H spectra were collected for 90 mins. For postprocessing jMRUI 6.0 was used applying 2Hz line broadening and frequency alignment. The signals of deuterated water (HOD), glucose (Gluc), glutamine/glutamate (Glx), and lactate (Lac) were fitted with a Lorentzian line shape using AMARES [10]. Tissue concentrations of 2H metabolites were determined referenced to the natural abundance of HOD at baseline (13.7mM). For each mouse, metabolite concentrations were averaged from 10-60 min to calculate group averages for APP/PS1 and WT mice. The cerebral metabolic rate of glucose consumption (CMRgl) and TCA flux (Vtca) were determined from the dynamic 2H glucose, lactate and Glx data applying a one-compartment model (Cwave software [11]). Blood glucose levels and fractional enrichment as input functions were obtained from blood samples.

In 2H MR spectra of WT and APP/PS1 mice, recorded immediately after application of deuterated glucose, a glucose 2H signal became visible next to the natural abundant 2H signal of HOD (Fig. 2). Shortly thereafter a combined signal for glutamine/glutamate and a signal for lactate appeared, which increased together with the HOD signal. After about 20 min the signals of glucose and lactate started to decrease, while that of HOD continued to increase (Fig. 3). The glutamine/glutamate signal reached a quasi-plateau at about 40 min (Fig. 3). The tissue concentrations of HOD, 2H glucose and lactate in the brain reached higher levels in the APP/PS1 mice than in the WT mice. Between 10-60 minutes after 2H glucose application the average glucose concentration was 6.39±0.43 mM for APP/PS1 and 5.28±0.46 mM for WT (p=0.0011) and the average HOD concentration was 19.38±0.47 mM for APP/PS1 and 17.80±0.35 mM for WT (p=0.0001). The average lactate concentration was 0.76±0.05 mM for APP/PS1 and 0.64±0.05 mM for WT (p=0.0012). Kinetic analysis, fitting the 2H glucose, Glx and lactate data to a one-compartment model, yielded significantly lower CMRgl and Vtca for the APP/PS1 mice compared to WT mice (Fig.4). Finally, we found a significantly increased area of GFAP staining in the cortex. No Glut1 transporter area difference was found in the cortex and hippocampus.

In the brain of the APP/PS1 AD mouse model at 6 months of age, glucose levels are increased compared to WT in agreement with Dynamic glucose enhanced MRI studies [12]. The reduced CMRgl explains the increased glucose levels. Thus, in contrast to previous FDG-PET studies we find decreased glucose metabolism in an early-stage Alzheimer disease model APP/PS1. Compared to FDG-PET, DMS or DMI has the advantage that downstream metabolism can also be assessed. The transiently increased lactate may be associated with astrogliosis, increased microglia and inflammation in agreement with an increased GFAP area in the cortex. The kinetic analysis also revealed a decreased Vtca which would agree with early mitochondrial defects in this mouse AD model [13].

In this study we demonstrate the potential of dynamic DMS to assess glucose in the brain of an Alzheimer mouse model, which may overcome the ambiquities of FDG-PET examinations. DMS and DMI have been shown to be feasible in the human brain [12] and thus may serve as clinical imaging biomarker in AD.
Andor VELTIEN, Sjaak VAN ASTEN (Nijmegen, The Netherlands), Maximilian WIESMANN, Tom SCHEENEN, Amanda KILIAAN, Arend HEERSCHAP
16:40 - 16:50 #47788 - PG028 Hypoxia-Targeted BOLD-MRI Reveals a Distinct Glioblastoma Tissue Response Extending Beyond the Contrast-Enhancing Tumor Border.
PG028 Hypoxia-Targeted BOLD-MRI Reveals a Distinct Glioblastoma Tissue Response Extending Beyond the Contrast-Enhancing Tumor Border.

Glioblastoma is the deadliest primary brain tumor and is characterized by abnormal neurovascular features and brain tissue infiltration extending beyond the contrast-enhancing(CE) tumor core. Current MRI techniques are suboptimal to accurately appreciate non-enhancing tumor tissue and the extent of glioblastoma infiltration. In the present prospective cross-sectional study, we investigated whether a new imaging contrast based on standardized transient hypoxic targeting during blood oxygenation level-dependent(BOLD)-MRI could be exploited to visualize glioblastoma tumor tissue and provide new insight on the peritumoral non-CE area.

Between April 2022 and November 2024 patients with radiological diagnosis of brain tumors were prospectively offered to undergo a BOLD-MRI during a standardized isocapnic double hypoxic protocol. %BOLD signal change, contrast-to-noise ratio(CNR), Rsquared and Lag were calculated voxel-wise in volumes of interest(VOI) using in-house written Matlab scripts after SPM preprocessing. Statistical analysis included comparison of calculated variables in tumor VOIs against contralateral flipped masks and of tumor VOI among each other and with healthy tissue. Color-coded overlay maps were produced for qualitative analysis.

Twenty-six adult patients with newly diagnosed untreated glioblastoma were included (mean age 64.8 +/- 10 years, 20 male). Upon hypoxic stimulation, CE tissue displayed stronger negative %BOLD change and higher CNR with respect to contralateral flipped masks as well as higher Rsquared (all p<0.001) and longer lag (p=0.002). CE tissue was significantly different from GM for all parameters while from WM, edema and necrosis only for %BOLD signal change and CNR. Abnormal hypoxia-BOLD response extended to some non-CE FLAIR hyperintense peritumoral tissue in several subjects.

In the present study we demonstrate that controlled hypoxic modulation during BOLD imaging robustly induces a tumor tissue contrast in patients with newly diagnosed glioblastoma. In particular, transient isocapnic hypoxia results in disproportionately stronger negative BOLD signal changes in CE tumor tissue, whereas healthy tissue, necrosis, and edema display a more modest response. Of note, while CE tumor’s response is to some extent heterogenous, evident signal change alterations extend in the FLAIR hyperintensity beyond CE tumor core in several of the included patients. According to the present understanding of the BOLD model, the potentiated negative signal response observed in glioblastoma CE tissue is to result from a higher, disproportionate, relative increase in local deoxyhemoglobin concentration upon hypoxic stimulation as compared to healthy one. This is likely to derive from a combination of higher CBV (stronger susceptibility effect during desaturation of higher blood volume), high resting CBF in absence of compensation to the stimulus (none to minimal vasodilation in isocapnic conditions, coupled to underlying inefficient autoregulation and impaired cerebrovascular reactivity i.e. CVR), inefficient modulation of oxygen extraction fraction(OEF) - and inability to adjust to changes in oxygen availability to restore metabolic equilibrium - and local aberrant anaerobic hypermetabolism. Our findings, complementing previous studies employing hypercapnic stimulus to explore tumoral and peritumoral CVR support the hypothesis that glioma-induced NVU, uncontrolled electrical activation, repetitive transient local hypoperfusion and hypoxia-driven aberrant vascular remodeling create a pathophysiological state of "dysfunctional hyperemia." In particular, we hypothesize that the physiological local transient functional hyperemic status whereby blood flow recruitment exceeds metabolic demand in healthy tissue is instead constitutively “active” at baseline state in glioblastoma due to hypoxia-induced neovascular features, abnormal electrical activation and synaptic integration of glioma cells into neural circuits as well as deranged local hypermetabolic changes, local shunting and dysfunctional oxygen processing. These neurovascular alterations would then contribute to result in a relatively higher local increase in deoxyhemoglobin during transient hypoxia in tumor tissue as compared with healthy one. Moreover, our preliminary findings suggest that, as abnormal BOLD response to hypoxia extends into specific non-CE peritumoral regions, this imaging contrast may provide critical insights into vascular changes preceding BBB breakdown, thus unmasking dysfunctional hyperemia and delineating tumor infiltration margins at an earlier stage than what appreciated with T1-CE MRI.

Transient hypoxia induces a strong negative BOLD signal response with excellent model fit in glioblastoma tissue extending to some peritumoral area. As neurovascular alterations in peritumoral tissue precede blood brain barrier disruption, hypoxia-targeted BOLD-MRI may better depict glioblastoma infiltration beyond the CE tumor core.
Vittorio STUMPO (Zurich, Switzerland), Jacopo BELLOMO, Christian Hendrik Bas VAN NIFTRIK, Martina SEBÖK, Tristan SCHMIDLECHNER, Natalia CANTAVELLA FRANCH, Andrea BINK, Micheal WELLER, Zsolt KULCSAR, Luca REGLI, Jorn FIERSTRA
16:50 - 17:00 #47779 - PG029 Exploring intracellular environment in low-grade gliomas by diffusion-weighted MRS and APTw imaging at 3T.
PG029 Exploring intracellular environment in low-grade gliomas by diffusion-weighted MRS and APTw imaging at 3T.

Gliomas are aggressive primary brain tumors classified by IDH mutation and 1p/19q codeletion status: oligodendrogliomas (IDH-mutant, codeleted), astrocytomas (IDH-mutant, non-codeleted), and glioblastomas (IDH-wildtype)[1]. Diffusion MRI has been widely used to assess glioma microstructure and aggressiveness[2], but water diffusion reflects all tissue compartments, limiting specificity. Diffusion-weighted MR spectroscopy (dMRS) overcomes this by probing intracellular metabolite diffusion[3]. Reduced diffusion of neuronal tNAA reflects axonal degeneration[4], while increased diffusion of glial markers tCr and tCho suggests hypertrophy[5]. Amide Proton Transfer weighted (APTw) imaging, sensitive to mobile proteins, has also shown potential to differentiate IDH-mutant from wildtype gliomas[6]. In this study, we compared dMRS and APTw measures in gliomas versus healthy tissue, and between oligodendrogliomas and astrocytomas. We hypothesized greater diffusion of glial metabolites and higher APTw signal in astrocytomas, consistent with their distinct cellular morphology and greater aggressiveness.

Spectra were acquired with a single-voxel diffusion-weighted semi-LASER[7] sequence (TE/TR=120ms/3 cardiac cycles) at 3T (Siemens PRISMA). Two VOIs were located respectively within the tumor and in the contralateral tissue. Water suppression was performed with VAPOR and B0 shimming using FASTESTMAP[8]. Diffusion weighting was applied in three orthogonal directions with b ~ 3000 s/mm2 (16 averages per condition). Phase and frequency corrections on individual scans were performed before summation. Averaged spectra per diffusion condition were fitted with LCModel[9]. tCho, tCr and tNAA apparent diffusion coefficients (ADCs) were estimated from signal decays induced by the diffusion weighting, averaged on the 3 directions. Data were acquired with B1 levels of 2 µT and 0.6 µT (saturation time: 2s, duty cycles: 90% and 50%)[10,11]. Frequency offsets varied from -6 to +6 ppm with increments of 0.5 ppm. Data processing was performed using Olea Sphere 3.0. Fluid-suppressed APTw maps were computed at amide offset frequency (3.5 ppm). Median Amide values were computed in the two VOIs. Differences between healthy and glioma tissue were assessed using paired t-tests. Differences between gliomas subtypes were assessed with Welch’s t-tests.

In vivo diffusion-weighted spectra are shown in Figure 1 together with FLAIR and amide maps in one patient. tCho and tCr ADCs were significantly higher in glioma than contralateral tissue (p=0.016 for both, Figure 2a). The ADC of tCr was significantly higher in astrocytomas (p= 0.045), but no other metabolites showed significant results in oligodendrogliomas (Figure 2b). Mean values of tCho and tCr ADCs were higher in astrocytomas than oligodendrogliomas, while the opposite trend was observed for tNAA ADC, however, these differences were far from statistical significance (Figure 2c). Amide signal was significantly higher in high grade gliomas compared to lower grades. No differences in amide signal were observed between astrocytomas and oligodendrogliomas (Figure 3). Weak negative correlations were observed between amide signal and metabolite ADCs in oligodendrogliomas (Figure 4).

Elevated tCr and tCho ADCs in gliomas vs contralateral tissue were consistent with two previous studies[12,13] performed in small cohorts of tumors and likely reflect the larger size of glioma cells compared to healthy cells, possibly combined with activated glia of the tumor microenvironment. The decreased tNAA ADC in astrocytomas may suggest a more severe axonal damage in this glioma subtype, compatible with their worse prognosis. Because metabolite intracellular diffusion should depend on both cellular morphology and intracellular properties such as viscosity and molecular crowding, we compared dMRS results with APTw measures in the same patients. tCr and tCho ADCs were increased despite the significant and expected increase in amide signal in tumor vs healthy tissue, and ADCs only weakly correlated with amide signal in oligodendrogliomas. These results suggest that protein accumulation in tumor may occur in different compartments (e.g. nuclei and mitochondria) than metabolite diffusion (cytosol and fibers).

We explored tumor intracellular environment in a very homogeneous cohort of patients with low-grade gliomas by combining dMRS and APTw. Changes in dMRS metrics likely reflected the different morphology of glioma cells compared to healthy cells. More advanced acquisitions and modeling of dMRS data are needed to differentiate between oligodendrogliomas and astrocytomas based on their different microstructural properties.
Capucine CADIN (Paris), Stefano CASAGRANDA, Lucia NICHELLI, Bertrand MATHON, Marc SANSON, Stéphane LEHÉRICY, Małgorzata MARJAŃSKA, Francesca BRANZOLI
17:00 - 17:10 #47701 - PG030 Impact of Sweetened Milk on Teriflunomide Treatment in a Multiple Sclerosis Mouse Model: Disease Progression and Drug Reporting using Fluorine-19 MR.
PG030 Impact of Sweetened Milk on Teriflunomide Treatment in a Multiple Sclerosis Mouse Model: Disease Progression and Drug Reporting using Fluorine-19 MR.

Multiple sclerosis (MS) is a chronic autoimmune disease characterized by inflammation and neurodegeneration in the central nervous system (CNS) [1]. Experimental autoimmune encephalomyelitis (EAE) in SJL/J mice is a widely used animal model that replicates key features of relapsing-remitting MS (RRMS), enabling the evaluation of therapeutic interventions and drug delivery strategies. The pharmacokinetics, including bioavailability, of drugs of MS like teriflunomide (TF) may be influenced by the choice of delivery vehicle[2-4]. Recent advances in voluntary micropipette-guided drug administration (MDA) using palatable carriers, like sweetened milk (SM) and sucrose plus carboxymethylcellulose (SCMC), present promising alternatives to traditional dosing methods using forced gavage [5, 6]. As refinement, this approach improves animal welfare, aligning with 3R principles and minimizing stress-induced experimental variability. In this study, we administered TF using voluntary MDA in EAE mice, using either SM or SCMC as delivery medium. We aimed to evaluate whether this delivery approach could ensure consistent intake while supporting hepatic accumulation and potential central nervous system (CNS) penetration of TF. We used ¹⁹F MR methods and high-performance liquid chromatography-mass spectrometry (HPLC-MS) to study TF MR properties and biodistribution [7].

EAE was induced in 24 female SJL/J mice via subcutaneous immunization with proteolipid protein peptide (PLP139-151) and assigned into vehicle and TF-treated groups (n = 6 per group). TF (30 mg/kg/day) was administered in either SM or SCMC, over 21 days. Body weight and clinical EAE score were recorded daily throughout the study. At the end of the experiment, tissues (serum, brain, liver) were collected for ex vivo HPLC-MS and MR measurements. Ex vivo HPLC-MS tissue measurements and analysis for assessing the TF concentrations are done by Lipidomix GmbH. Excised liver and brain samples were fixed in 4% paraformaldehyde (PFA) and embedded in 2% agarose within 5 mL tubes for MR measurements using a Bruker 9.4 T MR system equipped with a ¹⁹F cryogenically cooled probe (¹⁹F CRP) and a 1H RF coil. Post-processing and statistical analyses were performed in MATLAB 2023b and R Studio.

Mice treated with TF in SM (SM_TF group) exhibited no significant differences in disease incidence or overall severity compared to the SM groups (p > 0.05; Fig. 1a–b). In contrast, administration of TF in SCMC markedly reduced disease severity, particularly between days 11 and 17 post-immunization (p < 0.05; Fig. 1a). Mice in the SCMC group began to show symptoms on day 9, and reached to peak on day 12 (Fig. 1 b). In the SCMC_TF group, we observed significantly reduced disease severity and delayed onset (p< 0.01; Fig. 1a–b). Ex vivo HPLC-MS tissue analysis of the TF_SM group revealed, TF concentration levels in serum, liver, and brain consistent with previously reported findings (Table 1) [3]. The highest concentrations were observed in serum (78.24 ± 18.61 µg/g), followed by liver (64.11 ± 20.48 µg/g). TF levels in the brain were minimal (0.94 ± 0.52 µg/g). ¹⁹F MR spectroscopy of the TF_SM group (Fig. 2a) showed a TF signal peak at a chemical shift of -61 ppm in liver, in agreement with previous reports [3]. No detectable ¹⁹F MR signals were observed in the brain. ¹⁹F MR phantom experiments indicate that SM reduces the T2 of TF when compared to SCMC (Fig.3).

This study demonstrates that TF treatment is markedly influenced by the choice of MDA medium. In sweetened milk, TF failed to reduce the disease severity of EAE, indicating that milk protein might interfere with the pharmacological properties of the drug. This outcome is consistent with the observed tissue-selective distribution pattern, in which TF preferentially accumulated in the liver. Both HPLC-MS and ¹⁹F MR spectroscopy confirmed low TF in the brain. One plausible explanation is that TF binds to milk proteins, thereby impairing its anti-inflammatory activity in lymphoid tissue. ¹⁹F MR relaxation experiments indicating a T2 shortening of TF in SM, suggest that milk protein might bind to TF also during in vivo applications, even though TF is mostly bound to serum proteins in the bloodstream. These findings underscore the critical role of the administration vehicle in modulating drug biodistribution and efficacy, particularly in the context of neuroinflammatory diseases.

Our findings demonstrate that the therapeutic efficacy of teriflunomide is strongly dependent on the choice of administration medium. While TF dissolved in sweetened milk failed to reduce EAE severity, TF administered in SCMC significantly reduced clinical symptoms. Further pharmacological investigations are needed to confirm these findings and to optimize TF delivery strategies for neuroinflammatory conditions.
Xiang HU (Berlin, Germany), Nandita SAHA, Yinhao CHEN, Jason M.MILLWARD, Michael ROTHE, Marc NAZARÉ, Friedemann PAUL, Thoralf NIENDORF, Sonia WAICZIES
Auditorium 900

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15:40 - 17:10

ET1-1 - Practical Statistics

Chairpersons: Roy HAAST (PhD) (Chairperson, Marseille, France), Andrada IANUS (Chairperson, London, United Kingdom)
ET1: Cycle of Research
15:40 - 17:10 AI as an Augmentation of Statistical Analysis in MRI: A Bridge Between Classical and Modern Approaches. Maria Celeste BONACCI (Keynote Speaker, Catanzaro, Italy)
15:40 - 17:10 Traditional and advanced statistics. Ludovica GRIFFANTI (Keynote Speaker, Oxford, UK, United Kingdom)
Salle Major

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FT1 LT - Technological synergies in AI for MRI
Segmentation, reconstruction, and prediction

Chairpersons: Marco CASTELLARO (Assistant Professor) (Chairperson, Padova, Italy), Jessica WINFIELD (PhD) (Chairperson, London, United Kingdom)
15:40 - 15:42 #47752 - PG187 Automatic segmentation and iron overload detection of myocardium from dark-blood T2* magnetic resonance images.
PG187 Automatic segmentation and iron overload detection of myocardium from dark-blood T2* magnetic resonance images.

Myocardial iron overload is commonly evaluated using T2* mapping from dark-blood cardiac magnetic resonance imaging [1-4]. Iron accumulation shortens T2* relaxation times, with a cut-off value of 20 ms at 1.5 T indicating pathological overload and an increased risk of cardiac dysfunction [5]. An accurate quantification requires manual segmentation of the myocardium, a time-consuming process prone to inter and intra-operator variability. To date, there’s a lack of a gold standard for both global and segmental myocardial T2* segmentation and several approaches based on both computer vision and deep learning have been applied [6-9]. Convolutional neural networks (CNNs) [10] can offer a promising solution for automating global and segmental T2* analysis. This study aims to develop and validate a CNN-based method for automatic segmentation of T2* dark-blood MR images, and to test its ability to detect myocardial iron-overload.

Three parallel short-axis slices of the left ventricle (basal, mid-ventricular and distal) were acquired with dark blood Multi-Echo Gradient Echo sequences at 1.5 T. Segmentations were manually delineated by an expert radiologist. Both antero-septal and infero-septal junctions of the inter-ventricular septum were identified to divide the myocardium into 16 equiangular segments, according to the American Heart Association (AHA) model [11]. Two segmentation tasks were considered: a global segmentation, distinguishing myocardium from background at the pixel level, and a segmental segmentation, assigning each myocardial pixel to one of 16 anatomical segments or to the background. The dataset provided is composed by 102 subjects, divided into 50 healthy subjects and 52 patients affected by pathologies such as hemochromatosis and thalassemia. The data was split into a training (N=77), and a test (N=25) sets. We selected two deep learning networks for our model to enhance robustness: 3D nnU-Net [12] and 3D U-Mamba_bot [13]. A 5-fold cross-validation training strategy was employed on the training set to optimize model performance. In each fold, the best-performing model was selected to generate segmentation predictions, that were then ensembled using STAPLE [14] algorithm (Fig.1 and Fig. 2). The performance of the model was assessed by using the Dice Similarity Coefficient (DSC) and the 95th percentile Hausdorff Distance (HD95). For clinical validation, T2* values were estimated in each segment using a mono-exponential model with a ROI-based approach [15]. Automated segmentations were compared against ground-truth contours on the test set to quantify agreement in T2* measurements.

Using a 5-fold cross-validation, nnU-Net outperformed U-Mamba_bot in segmental segmentation, ranking best in 4 folds over 5. In global segmentation, nnU-Net achieved superior results in only 2 folds. Evaluation on the test set demonstrated a good agreement between manual and automated segmentations produced by the proposed algorithm for both tasks (Table 1). For segmentation overlap, the mean DSC was 0.819 ± 0.090 in the global approach and 0.738 ± 0.132 in the segmental approach. Regarding boundary accuracy, HD95 index was 2.000 ± 1.060 for global segmentation and 3.188 ± 2.573 for segmental segmentation. Average Pearson’s correlation of T2* values across the test set was 0.88±0.10. In the iron-overload classification task, the model achieved an accuracy of 0.88 in correctly identifying each of the 25 test subjects as either healthy or affected by iron overload, confirming the robustness and reliability of its predictive performance (Fig. 3).

The proposed method can provide fully automated segmentation of dark-blood T2* images. Global myocardium segmentation achieved a better performance than segmental subdivision, since multi-class segmentation with a limited dataset dimension could be more challenging than binary global segmentation. In the segmental analysis, slightly lower performance was observed in the apical slice, likely due to increased noise and reduced image quality in that region. High segmentation accuracy was achieved in the mid-ventricular septum (segments 8 and 9), supporting the hypothesis that this area is less affected by artifacts [15]. From a clinical perspective, a key finding of our study is that average segmental T2* values estimated by our approach closely matched those obtained by expert radiologists as demonstrated by the achieved correlation. Misclassifications occurred for T2* values near the 20 ms cut-off, which lead to incorrect classification of iron overload.

The proposed method provided good agreement with expert segmentations in both global and segmental myocardial segmentation. Furthermore, its performance in detecting myocardial iron overload is highly promising. These results lay the foundation for developing an advanced and fully automated pipeline for cardiac iron overload quantification, offering improved speed, reproducibility, and clinical applicability.
Ambra CHECCHETTO (Padova, Italy), Amalia LUPI, Giada BUSINARO, Simone PERRA, Alessandro GIUPPONI, Valentina VISANI, Alessia PEPE, Marco CASTELLARO
15:42 - 15:44 #45983 - PG188 A robust multi-network deep learning pipeline for automatic rectal cancer and mesorectum segmentation.
PG188 A robust multi-network deep learning pipeline for automatic rectal cancer and mesorectum segmentation.

Locally advanced rectal cancer (LARC) is a major cause of cancer-related morbidity and mortality [1] and accurate segmentation of the tumor and mesorectum on MRI is critical for treatment planning and therapy assessment [2,3]. Manual segmentation, however, is labor-intensive and prone to variability [4]. While deep learning methods have shown promise, most studies rely on single-scanner datasets or standardized protocols, limiting generalizability [5-9]. This study presents a robust deep learning pipeline for automatic segmentation of rectal tumors and mesorectum on T2-weighted MRI, trained and tested on a heterogeneous multi-scanner dataset. Data augmentation simulating typical MRI artifacts was applied, and final predictions were generated through an ensemble of segmentation models.

This study involved 141 patients (age: 61.6 ± 12.8 years; range: 27–87; M/F: 84/57) with LARC, imaged with axial T2-weighted MRI before neoadjuvant therapy. MRI scans were acquired across 17 different scanners (129 subjects at 1.5T and 12 subjects at 3T) from multiple institutions, introducing substantial variability in contrast, resolution, acquisition parameters and imaging protocols. This heterogeneity, along with anatomical variability of the rectal cancer and mesorectum, reflects real-world conditions and poses additional challenges for segmentation. Expert radiologists manually delineated both structures using 3D Slicer [10] (see Fig. 1 for examples of manual segmentations and variability in tumor shape). The dataset was split into training (113 subjects) and testing (28 subjects) sets, maintaining scanner diversity by including at least one case from each scanner in the test set. Notably, 5 of the 17 MRI scanners contributed only one subject each to the entire dataset and these were all included in the test set to assess the model’s ability to generalize to previously unseen scanners. Three different 3D network architectures were applied: nnU-Net [11], U-MambaBot [12] and Swin-UNETR [13]. Each model was trained using 5-fold cross-validation with identical splits. Training was conducted both with the standard nnU-Net data augmentation and with an extended scheme including TorchIO [14] and GIN-based [15] transforms to simulate typical MRI artifacts such as motion, ghosting, and bias field inhomogeneities. Two ensemble strategies were evaluated. In the first, the five fold-based predictions of each architecture were combined, and the resulting three outputs were further aggregated using STAPLE [16]. In the second, for each fold, the model with the highest validation Dice score across architectures was selected, and its prediction on the test set was used for final aggregation (see Fig. 2 for a schematic overview of the training and testing pipeline of this latter approach). Final segmentation performance was assessed on the test set using the Dice Similarity Coefficient (DSC) and the 95th percentile Hausdorff Distance (HD95), considering both rectal cancer and mesorectum.

Four ensembling strategies were evaluated, differing in whether predictions were aggregated per architecture or per fold, and whether advanced MRI-specific data augmentation was applied. The best performance was achieved with the fold-wise ensembling strategy combined with extended data augmentation, resulting in a mean DSC of 0.706±0.132 and HD95 of 22.567±27.254 mm for the rectal cancer, and a mean DSC of 0.756±0.121 and HD95 of 9.677±6.119 mm for the mesorectum. Across all configurations, both data augmentation and ensembling consistently improved segmentation quality. All detailed results are reported in Table 3. Fig. 4 provides a qualitative example of model predictions compared to ground truth annotations, using the best-performing configuration.

This study confirms the benefit of combining ensemble learning with MRI-specific data augmentation to enhance segmentation of rectal cancer and mesorectum on T2-weighted MRI. Augmentations simulating real-world artifacts improved both DSC and HD95, indicating greater robustness. Among the ensemble strategies, selecting the best-performing model per fold outperformed architecture-wise aggregation, likely due to improved exploitation of model diversity. Notably, Swin-UNETR was never selected in this setting, potentially as a result of the limited training data per fold, which may hinder transformer-based models known to require larger datasets [17-19].

This study highlights the effectiveness of integrating diverse 3D architectures, artifact-specific data augmentation and ensembling strategies for robust segmentation of rectal cancer and mesorectum on heterogeneous MRI. The use of a multi-scanner dataset improved generalizability, while STAPLE-based ensembling and advanced augmentations enhanced performance. Future efforts should focus on expanding data diversity, exploring additional imaging modalities and validating transformer-based models on larger cohorts to assess their full potential in clinical settings.
Simone PERRA (Padova, Italy), Filippo CRIMÌ, Valentina VISANI, Niccolò SION, Matteo PREZIOSO, Francesco CELOTTO, Claudio COCO, Giuditta CHILOIRO, Marco SCARPA, Emilio QUAIA, Simona DEIDDA, Gaya SPOLVERATO, Marco CASTELLARO
15:44 - 15:46 #47555 - PG189 Open-source multi-resolution graph cut algorithm for dual-echo water-fat separation.
PG189 Open-source multi-resolution graph cut algorithm for dual-echo water-fat separation.

Chemical shift-encoded water-fat separation is widely used for fat suppression and fat quantification in various anatomies. Dual-echo water-fat separation techniques allow efficient fat suppression, particularly in time-critical applications such as breath-hold acquisitions. Methods have been proposed that do not constrain the acquired echoes to in-phase and out-of-phase echo times allowing flexible echo timing [1-3]. Such methods usually exploit spatial neighborhood information to estimate a field or phasor map, similar to water-fat separation algorithms that require more than two echoes. However, the availability of open-source dual-echo water-fat separation techniques is still limited. Previously, a multi-resolution graph cut algorithm was introduced for water-fat(-silicone) separation using more than two-echoes [4]. The algorithm demonstrated robust water-fat separation in the presence of B0 inhomogeneities with efficient processing times [4]. Building on this framework, this work presents an open-source dual-echo water-fat separation method based on a multi-resolution graph cut algorithm. The proposed method is designed to achieve robust water-fat separation in the presence of low SNR and large B0 inhomogeneities.

The proposed dual-echo water-fat separation algorithm applied a water-fat signal model neglecting T2* decay and assuming a common initial phase for the water and fat species [3]. The phase difference between the first and second echo represents the phasor map and is proportional to the underlying field map after appropriate correction. First, two possible phasor solutions were estimated corresponding to the real and the water-fat-swapped solution [3]. Second, the proposed multi-resolution graph cut algorithm was applied to estimate an unwrapped phasor map from two possible phasor solutions constraining the smoothness of the phasor map. Four different graph cuts with different spatial resolutions were performed to successively increase the spatial resolution of the phasor map (Fig.1). Third, water and fat images were estimated via matrix multiplication using the estimated phasor map [3]. The implementation is publicly available (https://github.com/BMRRgroup/2echo-WaterFat-hmrGC), and the examples presented in this study will be included in the repository. The algorithm requires as input the complex-valued signal at both echo times, a signal mask, and acquisition parameters such as echo times, field strength, and a predefined fat model. Evaluation included a numerical simulation and in vivo datasets. The proposed multi-resolution approach was compared with a single-resolution graph cut used in the estimation of the unwrapped phasor map. A numerical Shepp–Logan phantom with varying fat fractions, linear field map and similar echo times compared to the in vivo scan was forward simulated at SNR of 10 and 100. In addition, the water–fat separation method was applied to 3D abdominal datasets with large field-of-view (FOV) coverage. The in vivo data were acquired at 3T (Ingenia Elition X, Philips Healthcare) using a free-breathing simultaneous water T1 and T2 mapping acquisition (2.5 mm isotropic resolution, FOV = 350 x 252.8 x 350 mm^3, TE = [1.0, 2.1] ms, TR = 3.4 ms), and water–fat separation was performed on the first subspace coefficient obtained after image reconstruction [5]. Water-fat separation employed a 9-peak in vivo fat model throughout the study [6,7].

Fig. 2 shows water and fat images and the field-map at SNR of 10 and 100, comparing the proposed multi-resolution and singe-resolution algorithms. Fig. 3 presents in vivo results for a large-FOV abdominal scan with a smoother field-map for the multi-resolution method, particularly at tissue boundaries. Fig. 4 shows additional volunteer data, demonstrating robust separation in the presence of large B0 inhomogeneities at the edge of the FOV.

Results demonstrated the robust performance of the multi-resolution approach in the presence of low SNR for a numerical simulation and strong B0 inhomogeneities for a large-FOV abdominal scan. In comparison to the single-resolution approach, the multi-resolution graph cut algorithm is particularly well suited for the dual-echo water-fat separation problem due to incorrect phasor estimation in voxels with low SNR or at tissue boundaries.

A dual-echo multi-resolution graph-cut algorithm was developed that is applicable at low SNR and in the presence of large B0 inhomogeneities. The algorithm is publicly available on Github.
Jonathan STELTER (Munich, Germany), Christof BOEHM, Dimitrios C. KARAMPINOS
15:46 - 15:48 #45708 - PG190 Comparison of Manual and Automated Segmentation of Human Articular Cartilage from 3D-MR Images: Influence of Field Strength and Knee Position.
PG190 Comparison of Manual and Automated Segmentation of Human Articular Cartilage from 3D-MR Images: Influence of Field Strength and Knee Position.

Accurate segmentation of articular cartilage is essential for assessing joint health and detecting early degenerative changes. While manual segmentation from high-resolution 3D-MRI offers precise anatomical detail, it is time-consuming and subject to inter-operator variability. Automated provide faster, standardized segmentation but may vary in performance depending on imaging conditions [1]. This study compares high-quality manual segmentation of human knee articular cartilage with automated segmentation by MRChondralHealth 4.1 (Siemens Healthineers), using 3D-MRI datasets (DESS- double echo steady state sequence) acquired at two magnetic field strengths (3T and 7T) and two knee positions (flexed and extended), to evaluate the influence of these variables on the segmentation accuracy and consistency.

Five volunteers were scanned at two whole body MRI scanners: 3T Prisma-Fit and 7T Investigational scanner (both Siemens Healthineers). Each subject was scanned twice: in fully extended knee position and in the knee flexion measured from long femoaral and tibial axis (22.5° in average) using 3D-DESS (double-echo steady state) sequence. Each dataset was segmented with two different methods: fully automated CAN3D-based segmentation [2] (MR ChondralHealth 4.1, Siemens Healthineers) and manual segmentation performed by an experienced medical doctor resulting in four cartilage labels (“patella”, “femur”, “lateral and medial tibia”) and one concatenated label (“all”). Three parameters were used to quantify the difference between manual and automated segmentation between field strength and knee positions, namely Dice coefficient (measures the overlap between two binary segmentation masks), Jaccard coefficient (quantifies the similarity between two sets by dividing the size of their intersection by the size of their union) and Hausdorff distance (measures the maximum distance from a point in one boundary set to the nearest point in the other boundary set). The differences of the means were compared using Student t-test, p-value lower than 0.05 was considered statistically significant.

Comparison between manual and automated segmentation across magnetic field strengths revealed statistically significant differences, particularly favoring 3T over 7T imaging in terms of segmentation agreement. At 3T, the mean Dice coefficient across all cartilage regions was 0.84 ± 0.04, compared to 0.82 ± 0.04 at 7T (p = 0.02), with similar trends observed in the Jaccard index and Hausdorff distance. Notably, the Hausdorff distance showed a large discrepancy (100.95 ± 15.61 mm at 3T vs. 32.89 ± 46.35 mm at 7T, p < 0.001), suggesting greater boundary alignment issues at higher field strength. Region-wise, the femur and tibia (lateral) showed the most significant field strength-dependent differences, highlighting variability in segmentation robustness across anatomical regions. In contrast, comparisons between flexed and extended knee positions showed minimal statistically significant differences. Across all regions, Dice scores were similar (0.85 ± 0.03 for extended vs. 0.83 ± 0.09 for flexed, p = 0.12), and only the Hausdorff distance for the lateral tibia showed a significant difference (p < 0.001).

This study highlights notable discrepancies between manual and automated segmentation of articular cartilage when comparing images acquired at different magnetic field strengths. The results demonstrated statistically significant differences in segmentation accuracy metrics (Dice, Jaccard, Hausdorff distance) between 3T and 7T datasets, particularly for automated segmentations generated by MRChondralHealth 4.1. These differences may be attributed to variations in image resolution, contrast, and noise characteristics inherent to different field strengths, which can influence the performance of automated algorithms. In contrast, only minimal differences were observed between flexed and extended knee positions. This suggests that joint positioning has a relatively limited impact on the segmentation performance of both manual and automated methods, at least within the constraints of the current imaging protocols. These findings underscore the importance of field strength consideration in both clinical and research applications of automated cartilage segmentation tools. While manual segmentation remains more consistent across imaging conditions, its time-intensive nature makes automation desirable—highlighting the need for field strength-adaptive or more generalized segmentation algorithms.

Significant differences were found between manual and automated segmentation results when comparing MRI scans at 3T versus 7T, whereas knee position (flexed vs. extended) had minimal effect. These results emphasize the sensitivity of automated segmentation tools to variations in MRI field strength and the need for further optimization of such tools for reliable application across diverse imaging conditions.
Vladimir JURAS (Vienna, Austria), Veronika JANACOVA, Markus SCHREINER, Karin UNTERBERGER, Diana SITARCIKOVA, Pavol SZOMOLANYI, Esther RAITHEL, Gregor KOERZDOERFER, Siegfried TRATTNIG
15:48 - 15:50 #47882 - PG191 A Transformer Based Approach to Multi-modal Brain Tumor Segmentation with Arbitrary Missing Modalities.
PG191 A Transformer Based Approach to Multi-modal Brain Tumor Segmentation with Arbitrary Missing Modalities.

Follow-up of brain tumor treatment benefits from segmentation in Magnetic Resonance (MR) Images. However, manual segmentation of brain tumors is time consuming and labor-intensive. State-of-the-art automated brain tumor segmentation techniques typically rely on multiple magnetic resonance imaging (MRI) modalities, which, in practice, may not always be acquired in clinical settings. Moreover, contrast injections that are necessary to acquire gadolinium enhanced T1-weighted images, are contraindicated in certain patients (for example, patients with severe kidney failure) [1]. Therefore, developing more resilient deep learning segmentation models capable of handling cases with one or more missing modalities would be highly beneficial. Current leading methodologies addressing the missing modality challenge employ various strategies, such as training a separate model for each missing condition or leveraging fully available data during training while masking inputs to simulate missing modalities [2]. In this work, we introduce a novel transformer-based architecture [3] that integrates the available multi-modal features. The key advantage of our approach lies in its unified design, allowing it to process a variable number of inputs. The proposed method demonstrates competitive performance against state-of-the-art approaches in 2D whole tumor segmentation on publicly available Brain Tumor Segmentation Challenge (2021) data [4].

Three incremental methodologies were implemented and tested on the BraTS 2021 dataset [4], which consists of 4 co-registered MRI volumes of 1251 patients: native T1-weighted (T1), post-contrast T1-weighted (T1Gd), T2-weighted (T2), and fluid attenuated inversion recovery (T2-Flair); and respective ground truth (GT) segmentations validated by experienced radiologists: GD-enhancing tumor (ET), peritumoral edematous tissue (ED), and necrotic tumor core (NCR). All volumes were normalized and converted into 2D 128 x 128 axial slices. The GT labels were converted into 3 mutually inclusive regions that better represent the clinical application task: whole tumor (WT = ET + ED + NCR), tumor core (TC = ED + NCR) and enhanced tumor (ET, same as provided label) [5]. First, a baseline U-Net architecture, that requires all 4 modalities (4 channel inputs), was implemented as in [6] and adapted for 2D segmentation. As an intermediate step to address missing modalities, a modality dropout (ModDrop) [7] strategy was integrated into the baseline, by randomly dropping up to 3 modalities during training with a fixed probability. Our proposed approach (ModVit, Figure 1) integrates the previous methods with 2 major modifications: a single channel shared encoder that processes 1 available modality at a time as in [8] and a vision transformer [3] based bottleneck. The U-Net was trained with 4 modalities and tested in both full and missing modality conditions. ModDrop and ModVit were trained and tested with missing modality conditions, each modality was dropped with a fixed probability of 0.3 for each sample during training. The Dice loss was used as the minimization criterion and the Dice similarity coefficient as the main evaluation metric.

In Table 1, Dice similarity scores are presented for the 3 tumor regions and 3 models tested in all possible missing modality configurations (i.e. fixed configuration repeated for every test sample). In the last test condition, a random configuration was attributed to each sample. In Figure 2, a qualitative comparison between the GT and model segmentations for U-Net and ModVit are presented for 2 axial slices, given a specific modality configuration (T1Gd and T2-Flair missing). Both quantitative and qualitative results show that ModVit is resilient to missing modality conditions, in contrast to U-Net.

Despite achieving state-of-the-art Dice scores with 4 modalities, U-Net shows noticeably degraded performance in ET and WT segmentation with missing T1Gd and/or T2-Flair, which contain important information for the delineation of these regions by radiologists. This is also supported by the poor quality of segmentations in Figure 2. In ModDrop, randomly dropping modalities during training creates a regularization effect and constitutes a simple but effective method for making a network more robust to missing modalities, without changing its architecture. While the improvement of ModVit over ModDrop is incremental, it has the main advantage of accepting variable sized inputs and avoids mixing zeroed inputs with relevant data in the first layers, performing the feature integration only between available features in the bottleneck stage instead.

In this work, we presented a flexible framework that addresses the missing modality problem, by integrating the variable sequence length processing capability of the transformer architecture, into an existing and validated methodology of automated brain tumor segmentation.
Marc GOLUB (Lisbon, Portugal), Rita G. NUNES, Carlos SANTIAGO, Jacinto C. NASCIMENTO
15:50 - 15:52 #47591 - PG192 Machine Learning-Based IDH Mutational Subgroup Classification in Gliomas Using Cerebral Blood Flow and BBB-ASL Exchange Times.
PG192 Machine Learning-Based IDH Mutational Subgroup Classification in Gliomas Using Cerebral Blood Flow and BBB-ASL Exchange Times.

Gliomas are the most common primary neoplasms in adults, and accurate histopathological grading and subtyping are essential for optimal treatment planning [1]. A key factor in glioma subtyping is isocitrate dehydrogenase (IDH) gene mutations [2]. Blood-brain barrier (BBB) breakdown is frequently observed in IDH-wildtype (IDH-wt) gliomas and brain metastases and is typically measured by assessing leakage of a gadolinium-based contrast agent on T1-weighted (T1w) MRI [3]. However, subtle changes in BBB integrity may be missed by conventional contrast-enhanced T1w MRI due to the higher molecular weight of the contrast agents [4]. The blood-brain barrier arterial spin labeling (BBB-ASL) technique provides a non-invasive alternative for detecting a broader range of BBB disruptions [5]. A previous study has demonstrated the feasibility of using BBB-ASL to identify IDH mutation status in gliomas based on cerebral blood flow (CBF) or exchange time (Tex) [6]. The current study improves this approach by jointly employing CBF and Tex using machine learning algorithms.

Twenty-five histopathologically proven gliomas (15 glioblastomas (IDH-wt), 10 astrocytomas (IDH mutant (IDH-mut)), M:F= 14:11, mean age= 53.6±14 years) were scanned on a clinical 3T MRI scanner (MAGNETOM Prisma, Siemens Healthineers, Erlangen, Germany) with a 32-channel head coil. A 3D TSE SPACE sequence (TR= 600 ms, TE= 12 ms, slice thickness= 0.8 mm, in-plane resolution= 0.4x0.4 mm2) was used to acquire pre- and post-contrast T1w MRI. FLAIR images were acquired using a 2D TSE sequence (TR= 9000 ms, TE= 92 ms, TI= 2400 ms, slice thickness= 3 mm, in-plane resolution= 0.7x0.7 mm2, spacing between slices= 3.6 mm). A combination of single-TE and multi-TE time-encoded pseudo-continuous ASL (pCASL) sequences was acquired with a 3D GRASE readout, implemented using gammaSTAR (details in Table 1) [7]. CBF and Tex were estimated using ExploreASL [8] with the two-compartment model implemented in FSL-FABBER [9]. Post-contrast T1w and FLAIR images underwent bias field correction (FSL FAST[10]) and skull stripping (FSL BET [11]). Whole tumor and necrosis regions were segmented using FLAIR and post-contrast T1w MRI in 3D Slicer [12]. Normal-appearing gray matter (NAGM) segmentations were performed on pre-contrast T1w MRI for the contralateral hemisphere using SPM12 [13]. Segmented masks were registered to CBF maps using SPM12. Regional T2 values were obtained by fitting multi-TE control images from the Hadamard-4 PCASL to a mono-exponential decay using a non-linear optimizer in MATLAB, minimizing the least square error [14]: S_{i}=S_{0}e^{-\frac{TE_{i}}{T2}}, i=[1:8] (1) where S_{i} represents the i-th TE (TE_{i}) of the control images and S_{0} denotes the transverse magnetization signal. T2 and S_{0} were estimated simultaneously. Patient-specific T2 values were then used to calculate corrected CBF (CBF_corr) and Tex (Tex_corr) maps. Finally, relative CBF_corr (rCBF_corr) and relative Tex_corr (rTex_corr) maps were generated by normalizing respective maps with the median T2-corrected values in NAGM. To classify IDH-wt and IDH-mut tumors, eight histogram-based features—mean, median, standard deviation, 10th and 90th percentiles, skewness, kurtosis, and energy—were extracted from the rCBF_corr and rTex_corr maps. SHAP analysis was used to identify the top 10 among the total 16 features. Random forest, support vector machine (SVM), k-nearest neighbors (kNN), XG Boost, and naive Bayes classifiers were trained, and model performances were evaluated using three-fold cross-validation.

Figure 1 shows rCBF_corr and rTex_corr maps for IDH-mut and IDH-wt patients. kNN performed best (accuracy: 0.833 ± 0.118, AUC: 0.859 ± 0.109), followed by random forest and XGBoost (accuracy: 0.759 ± 0.103 for both) with lower AUCs. SVM had lower accuracy (0.718 ± 0.066) but a strong AUC (0.827 ± 0.161) (Table 2). Overall, kNN outperformed the other models in terms of accuracy and AUC, making it the most effective model for this classification task. Figure 2 displays a) the SHAP summary plot and b) the kNN ROC curve.

The machine learning analysis demonstrated that the kNN model outperformed all other classifiers across all performance metrics in distinguishing IDH-wt from IDH-mut gliomas. In addition to its superior classification performance, kNN was also among the fastest models, indicating both efficiency and robustness in this application. The complementary value of perfusion and exchange time metrics was evident, highlighting especially the exchange times as a promising imaging biomarker. SHAP analysis identified rTex_corr Energy and rCBF_corr Energy as the most important features. Although these results are encouraging, further validation is needed on larger datasets to confirm clinical applicability.

Our findings support the potential of combining rCBF and rTex metrics with machine learning to improve non-invasive IDH mutation status prediction in gliomas.
Gülce TURHAN (Üsküdar, Turkey), Ayse Irem CETIN, Omer Yasin CUR, Beatriz E. PADRELA, Amnah MAHROO, Simon KONSTANDIN, Daniel Christopher HOINKISS, Nora-Josefin BREUTIGAM, Henk-Jan MUTSAERTS, Ayca ERSEN DANYELI, Koray OZDUMAN, Klaus EICKEL, Vera KEIL, Matthias GÜNTHER, Jan PETR, Alp DINCER, Esin OZTURK-ISIK
15:52 - 15:54 #47751 - PG193 Masked Auto-Encoders for Classification of Concussion using Imbalanced rs-fMRI Data.
PG193 Masked Auto-Encoders for Classification of Concussion using Imbalanced rs-fMRI Data.

Concussions are brain injuries diagnosed on subjective symptom reporting, and do not by definition result in gross structural brain changes. [1] However, rather than structural imaging, functional imaging such as resting state functional magnetic resonance imaging (rs-fMRI) has shown promise as a tool for concussion diagnosis and monitoring. Yet there are multiple rs-fMRI metrics, and which ones are most discriminatory between concussion patients and healthy controls remains unknown. Deep learning models are becoming powerful tools for clinical decision making, but training these models assume class balance in the data. Unfortunately, medical data are often imbalanced for reasons such as privacy or rarity of conditions. This leads to biased models where higher accuracy is achieved by predicting the majority class because the samples are more likely to be from said majority class. This applies in concussion, where clinical cases are difficult to recruit and image while healthy control data (particularly from open sources) are abundant. We proposed adapting a two-stage training process consisting of 1) pre-training a masked auto encoder (MAE) using a subset of the majority class (e.g., controls) and 2) training on the remaining, more balanced set of samples, for classification of concussion. We also analyzed the importance of features to identify important regions of interest (ROIs) for concussion classification.

Pediatric patients (n=28, aged 9-17yrs) who had been diagnosed with a concussion (within the past 4-weeks of injury) by a clinical partner experienced in pediatric concussion management were scanned using a GE Healthcare 3T MRI. Participants were excluded if they had more severe brain injury or prior neurological history. Healthy control data (n=500) of age matched subjects were obtained from the ABIDE-II[2] repository and were screened for data quality (i.e. signal-to-noise ratio, percentage of outlier scans, and data smoothness), resulting in 379 matched healthy controls. Pre-processing was done using CONN 21a in MATLAB and functionalities of SPM12. The rs-fMRI data were functionally realigned and co-registered to the 3D T1-weighted anatomical data and warped into MNI space, slice-timing corrected, segmented and normalized, and spatially smoothed. Outlier detection was applied using SPM's Artifact Detection Tool and de-noising was applied using CONN's anatomical component-based noise correction. Temporal filtering was applied to remove frequencies outside of the 0.008-0.1Hz range. ROIs were then extracted using the Harvard-Oxford atlas, identifying 132 ROIs per subject. The data then had the following feature extraction methods applied to each ROI: mean, standard deviation, sample entropy[3], Lyapunov exponent[4], amplitude of low-frequency fluctuations (ALFF) and fractional ALFF(fALFF) [5] before being normalized. The MAE closely follows the methodology of He et al. [6] while adjusting for use to address class imbalance. The MAE was pre-trained using 300 healthy controls to recover the original input from a subset of an input’s features generated by randomly masking (i.e. removing) portions of the input. The MAE consisted of an encoder of 5 transformer layers and decoder of 2 linear layers. After pre-training, the decoder was replaced with linear layers and re-trained on the remaining 79 healthy controls and 22 concussion patients for classification. Parameters for the linear layers were found empirically. Model performance and feature importance were assessed using a test set of 15 healthy controls and 6 concussion patients. Feature importance was identified through an ablation method where an input feature (ROI value) of a sample was set to -1 (an impossible value) and given to the model for classification. The difference between model output was then calculated. This was repeated for every input feature in the sample and all samples in the test set. The absolute value of the ablation analysis output across the test set was summed and ranked. The input features which change the model output the most were deemed important features.

Figure 1 shows the output of the MAEs compared to the original input. Empirical classification results are detailed in Table 1 and show concussion classifiers trained with this method can have test accuracy up to 95.24% (sample entropy). ROIs deemed important for concussion classification include the vermis and cerebellar regions (Fig.2).

The issue of imbalanced data is often addressed with synthetic data or transfer learning. Both methods have limitations such as overfitting from oversampling or the lack of previously trained models being available. This method does not require synthetic data or models trained on other data and results show that this may be an alternative to address the imbalanced nature of medical data.

MAEs show promise for training a rs-fMRI based concussion classifier using imbalanced data, but more data is needed to solidify this finding.
Calvin ZHU (Hamilton, Canada), Bhanu SHARMA, Cameron NOWIKOW, Thomas DOYLE, Michael NOSEWORTHY
15:54 - 15:56 #45990 - PG194 Classification of Parkinson’s Disease Using Depthwise Separable 3D Convolutional Neural Network (DS-3DCNNs).
PG194 Classification of Parkinson’s Disease Using Depthwise Separable 3D Convolutional Neural Network (DS-3DCNNs).

Parkinson's Disease (PD) is a neurodegenerative disorder characterized by the degeneration of dopaminergic neurons in the substantia nigra, leading to motor and cognitive impairments [1]. Magnetic Resonance Imaging (MRI) plays a vital role in PD diagnosis by providing detailed soft tissue contrast and three-dimensional structural information [2]. Traditional PD diagnosis often relies on manual interpretation of MRI scans, which is subjective and time-consuming. Deep learning, particularly Convolutional Neural Networks (CNNs), offers an automated and systematic method for feature extraction from MRI data [3]. 3D CNNs offer significant advantages over 2D CNNs in processing volumetric MRI data, capturing both spatial dependencies and volumetric information. However, 3D CNNs also present challenges, such as high computational costs and memory demands, leading to extended training times and resource inefficiencies. Additionally, the large number of parameters increases the risk of overfitting, particularly with smaller datasets. To address these, we used depthwise separable convolutions (DS-CNNs), reducing parameters by 10-20%, improving efficiency and mitigating overfitting without sacrificing performance [4]. This makes 3D CNNs more feasible for high-dimensional medical imaging tasks, such as PD detection. While CNNs have shown success in detecting PD at later stages, research focusing on early-stage or prodromal PD detection remains limited. This study aims to address this gap by developing a deep learning-based system that incorporates the prodromal phase into the diagnostic pipeline. By leveraging DS-3DCNNs, this study seeks to enhance the diagnostic precision of early-stage PD detection, ultimately enabling more effective early interventions.

This study focuses on detecting Parkinson’s Disease (PD) and classifying MRI scans into three categories: healthy control, prodromal, and Parkinson’s Disease, using depthwise separable 3D convolutional neural networks (DS-3DCNNs). The methodology consists of four stages: MRI scan acquisition from the PPMI database, data preprocessing and registration, DS-3DCNN architecture, and performance evaluation. The DS-3DCNN architecture efficiently extracts spatial and volumetric features from high-dimensional MRI data, reducing computational cost without compromising performance. Each convolutional layer is followed by a ReLU activation and max-pooling to minimize overfitting. The final output layer uses softmax activation for classification into PD, healthy control, or prodromal stages. The model, with 3,094,115 parameters, was trained on 426 subjects from the PPMI dataset [5]. Image registration was performed using ANTsPy for spatial consistency. The method is detailed in Figure 1, and the architecture is shown in Figure 2.

The performance of the proposed 3D Convolutional Neural Network (3D CNN) model was evaluated using 5-fold cross-validation. The model demonstrated strong classification accuracy across three categories: Parkinson's Disease (PD), Healthy Control (NC), and Prodromal. The average accuracy was 91.0 ± 2.2%, with Split 3 achieving the highest accuracy of 93.45%. Split 3 also achieved a precision of 0.9420, recall of 0.9298, and an F1-score of 0.9284, with an ROC-AUC of 0.94, indicating strong discriminatory ability, as shown in Table 1. These results demonstrate consistent performance across all splits with low standard deviations. To further assess model interpretability, Grad-CAM was applied to visualize the regions of the MRI scans that most influenced classification decisions. For the PD class, activations were observed in key areas such as the basal ganglia and brainstem, which align with known PD pathology, as shown in Figure 3. In the Prodromal class, the model highlighted regions indicative of early neurodegenerative changes, supporting the model’s alignment with established neuroanatomical patterns of PD progression.

The results demonstrate that the DS-3DCNN model effectively classifies Parkinson’s Disease, healthy controls, and prodromal cases, achieving an accuracy of 91.0 ± 2.2% and precision of 0.922 ± 0.015. The model's ability to identify key regions associated with PD pathology, such as the basal ganglia and brainstem, enhances its clinical relevance. Despite challenges in early-stage detection, the model's strong performance underscores its potential for early intervention, supporting the integration of DS-3DCNNs into clinical diagnostic pipelines.

This study demonstrates the effectiveness of DS-3DCNNs in detecting Parkinson's Disease, particularly in the prodromal stage, using MRI scans. The model’s high accuracy and ability to identify biologically relevant regions offer promising implications for early diagnosis and intervention. Further validation and integration of this model could significantly improve early-stage PD detection and patient outcomes in clinical settings.
Muhammad ZUBAIR (Chieti, Italy), Matteo FERRANTE, Cosimo DEL GRATTA, Nicola TOSCHI
15:56 - 15:58 #47391 - PG195 Differentiation of parkinsonian syndromes based on multimodal MRI and 3D convolutional neural network.
PG195 Differentiation of parkinsonian syndromes based on multimodal MRI and 3D convolutional neural network.

Multiple system atrophy (MSA), a rare atypical parkinsonian syndrome, can prove challenging to differentiate from Parkinson’s disease (PD), especially at an early stage [1]. Combining MRI data and machine learning techniques has shown great potential in aiding differential diagnosis [2]. As a powerful tool for image analysis, convolutional neural networks (CNNs) enable the analysis of multidimensional images, such as MRI, offering an automatic and user-independent tool [3]. This study advances using a 3D CNN to distinguish patients with MSA from those with PD relying on multimodal, multicentric MRI data. CNN predictions were investigated by highlighting the most important regions and examining the characteristics of misclassified patients.

The patient cohort included patients with PD and patients with MSA presenting the cerebellar (MSA-C), parkinsonian (MSA-P), and mixed (MSA-PC) variants. We gathered MRI data from three sites of the French MSA reference center (Bordeaux, Paris, Toulouse) acquired with 3T MR scanners. For our multimodal pipeline, we considered the T1-weighted sequence, to compute gray matter density (GD) maps, and diffusion tensor imaging data, to compute mean diffusivity (MD) maps. All images were normalized in the MNI space with a 2×2×2 mm3 resolution. While GD maps give insights into macrostructural changes, e.g. atrophy, MD maps inform about the microstructural integrity of cerebral tissues. GD and MD maps were used as input individually or combined into a three-dimensional CNN architecture [4] to differentiate between PD and MSA or its variants. We trained the CNN with a 50-time repeated five-fold cross-validation on 80% of the dataset, the remaining used as a hold-out set for testing, considering three different data splits. We assessed performances with common evaluation metrics (sensitivity, accuracy, sensitivity) on the hold-out sets. To improve model interpretability, we (i) employed a visualization technique [5] to determine the most relevant regions for prediction, and (ii) examined the clinical and imaging characteristics of misclassified patients.

The patient population included 64 patients with PD and 92 patients with MSA, comprising 9 with MSA-PC, 33 with MSA-C, and 50 with MSA-P [2,6–9]. The CNN yielded the best accuracies using MD for the PD vs MSA-C/PC task (0.84±0.08), GD for the PD vs MSA-P task, and both GD-MD maps for the PD vs MSA (all variants) task (0.88±0.03). We observed a gap between sensitivity (performance on MSA patients) and specificity (performance on PD patients), the latter superior to the former (0.71-0.84 vs 0.75-0.99). Milder and fewer image alterations emerged for misclassified patients, who presented overall younger age and shorter disease duration. The visualization technique highlighted as relevant for CNN prediction, regions involved in the MSA pathophysiology, i.e. the cerebellum and putamen.

This study successfully differentiated MSA from PD patients using an MRI-based pipeline via a 3D CNN. While the monomodal approach gave insight into the informative content of a single MRI map (GD or MD), the bimodal approach (GD-MD) improved overall performance. This could be attributed to the complementary information from the two MRI maps, reinforcing the advantage of multimodality [10]. The most challenging task was PD vs MSA-P, whereas increased sensitivity was found for the others. A key requirement for AI in medical care is the need for transparency and elements of interpretability [11]. In this regard, we investigated CNN performance by exploring convolutional layer activations resulting in a visual interpretation. Interestingly, we found regions of interest in the differentiation of MSA from PD which were the most activated, thus supporting the CNN predictions. Albeit blind to clinical characteristics, the CNN seemed more prone to misclassify younger patients with a shorter disease duration. This warns about the necessity of developing automatic tools to distinguish early-stage data. Moreover, the analysis of misclassified patients from an image point of view showed that they were characterized by less severe and fewer alterations, hence the difficulty for the CNN to capture these subtler anomalies. Although promising, these findings come with some limitations. First, due to the rarity of the MSA, our study is burdened by data paucity. However, gathering multicentric data and keeping MRI parameters as homogenous as possible, represented a great effort and favored a fair disease heterogeneity. Second, disease confirmation can only be obtained post-mortem and is seldom available. Future work includes validating our approach using external data and extending to other parkinsonian syndromes.

This study marks the beginning of a comprehensive exploration of the potential of MRI combined with CNNs for differentiating parkinsonian syndromes. Our objective is to develop an image-based automated aid-to-diagnosis tool.
Giulia Maria MATTIA (Toulouse), Lydia CHOUGAR, Alexandra FOUBERT-SAMIER, Wassilios G. MEISSNER, Margherita FABBRI, Anne PAVY-LE TRAON, Olivier RASCOL, David GRABLI, Bertrand DEGOS, Nadya PYATIGORSKAYA, Alice FAUCHER, Marie VIDAILHET, Jean-Christophe CORVOL, Stéphane LEHÉRICY, Patrice PÉRAN
15:58 - 16:00 #47885 - PG196 Exploring Kolmogorov–Arnold Networks for 3D T1-weighted MRI-Based Brain Age Prediction.
PG196 Exploring Kolmogorov–Arnold Networks for 3D T1-weighted MRI-Based Brain Age Prediction.

Brain age prediction from T1-weighted MRI is a key biomarker of neurological health, sensitive to neurodegeneration [1-3] and brain development [4]. Convolutional Neural Networks (CNNs) have been widely adopted for this task, given their ability to extract spatial features from MRI scans [5–7]. However, Kolmogorov–Arnold Networks (KANs), inspired by the Kolmogorov–Arnold representation theorem, have recently demonstrated competitive or superior performance in various image-related tasks [8, 9]. KANs approximate complex functions more efficiently than conventional neural networks and have shown promise in classification, segmentation, and generative tasks. Here, we present the first application of KANs for 3D brain age prediction and compare their performance to standard CNNs.

We used T1-weighted MRI scans from three publicly available datasets: the Human Connectome Project [10], the Nathan Kline Institute - Rockland Sample [11], and the Cambridge Centre for Aging and Neuroscience [12]. The combined cohort included 2,129 participants (878 males and 1,250 females), ranging in age from 18 to 100 years. All images were linearly co-registered to MNI152 2009c standard space to ensure spatial alignment and a uniform input shape (193×229×193). To enhance model generalizability, we applied data augmentation, consisting of rotation (±40°) and translation (±10 pixels) [13]. Data were randomly split into training (64%), validation (16%), and test (20%) sets, stratified by age and sex. For cross-validation experiments, the training and validation sets were redefined in each fold. Mann-Whitney U tests confirmed no statistical differences in age or sex between training and test sets (p = 0.901) nor between training and validation sets across cross-validation folds (lowest p = 0.840). We evaluated: a baseline CNN [14], a convolutional KAN with a linear KAN output layer (KAN), and a hybrid CNN with a final linear KAN layer (CNN + KAN-Lin). Both CNN and hybrid models used 3×3×3 kernels and strides of 1 and 2 in the first convolutional layer. For memory efficiency, the KAN model was only tested at stride 2. All models were trained using MSE loss and the Adam optimizer (learning rate = 0.0001) for 1000 epochs, with validation every 50 epochs. The best models, those with the lowest validation loss, were assessed on the test set using Mean Absolute Error (MAE) and Pearson Correlation Coefficient (r). In cross-validation, performed only for stride-2 models, final predictions were obtained via median ensembling of the best-performing models from each fold.

As shown in Table 1, KAN model with stride 2 reduced MAE by 15.16% over the baseline CNN, while the hybrid CNN + KAN-Lin model with data augmentation (DA) improved MAE by 11.72%, offering the best trade-off between accuracy and computational load. Moreover, DA consistently improved generalization across models, improving the performance on unseen test data. Due to memory constraints and hybrid’s model efficiency, stride-1 evaluation excluded the KAN model. At stride 1, the hybrid model outperformed the CNN baseline by 5.77% with DA. However, the performance gain was smaller than with stride-2, likely because high-resolution input allowed CNN layer to extract finer features, reducing the added value of the KAN layer. Despite improvements, all models exhibited age bias (Figure 1): younger subjects’ ages were overestimated and older subjects’ underestimated. However, the hybrid model showed a smoother Predicted Age Difference (PAD) curve and improved accuracy for middle-aged individuals, though biases persisted at age extremes.

These findings suggest that KANs offer a promising alternative to CNNs for brain age prediction from 3D MRI. In particular, the hybrid CNN + KAN-Lin model emerged as the most efficient and accurate configuration, effectively combining CNNs’ spatial feature extraction with KANs’ expressive function approximation. Moreover, DA played a crucial role in enhancing model robustness. However, persistent age bias highlights the need for additional strategies such as post processing debiasing methods or regularization. The high computational demand of KANs remains a limitation for high-resolution inputs.

This study demonstrates, for the first time, the potential of KANs for brain age prediction from 3D MRI. A hybrid CNN + KAN-Lin architecture achieved the best compromise between predictive accuracy and computational feasibility, showing consistent generalization with data augmentation. While both models exhibited age-related bias, the hybrid approach produced smoother PAD distributions and better accuracy for mid-life age ranges. This synergy of CNNs and KANs opens a new direction for efficient, interpretable, and generalizable neuroimaging models. Future work will focus on mitigating age bias and scaling pure KANs for full-resolution inputs.
Alessandro GIUPPONI (Padova, Italy), Davide DE CRESCENZO, Marco PINAMONTI, Valentina VISANI, Manuela MORETTO, Alessandra BERTOLDO, Mattia VERONESE, Marco CASTELLARO
16:00 - 16:02 #46042 - PG197 Gestational Age Prediction with Transfer Learning and Pre-Trained CNNs Architectures using Fetal MRI Data.
PG197 Gestational Age Prediction with Transfer Learning and Pre-Trained CNNs Architectures using Fetal MRI Data.

Gestational age prediction is crucial in prenatal care, aiding in fetal development assessment and health risk evaluation. Traditional methods like ultrasound (US) are commonly used but can be inaccurate, especially when imaging quality is compromised by maternal obesity, fetal positioning, or low amniotic fluid levels [1]. US also has limitations in later pregnancy stages, with errors of up to 2–4 weeks. Recent advancements in medical imaging, particularly Fetal MRI, improve gestational age estimation. Fetal MRI provides superior resolution, enabling detailed visualization of fetal brain anatomy and myelination, essential for accurate predictions [2]. However, challenges such as rapid developmental changes, suboptimal signal-to-noise ratios, geometric distortions, and fetal motion affect image quality [3]. Additionally, inconsistencies in MRI protocols and operator expertise complicate interpretation. Deep learning, particularly Convolutional Neural Networks (CNNs), is a powerful tool for analyzing complex medical images. CNNs excel at extracting detailed features from large datasets, making them ideal for tasks like gestational age prediction from fetal MRI. Transfer learning, which fine-tunes pre-trained models on smaller datasets, addresses data limitations in medical imaging [4]. This study explores transfer learning with pre-trained CNN architectures to improve gestational age prediction, aiming to enhance accuracy and provide more reliable estimates.

This study used transfer learning with the VGG16 architecture to predict gestational age from fetal MRI scans. The dataset, sourced from ITAB, includes 261 studies with T2-weighted MRI sequences across axial, coronal, and sagittal planes. Preprocessing involved converting DICOM images to JPG, resizing them to 224x224 pixels, and converting grayscale to RGB. Data were segmented by anatomical plane, with key slices (1, 3, and 5) selected for optimal fetal brain representation. The VGG16 model was fine-tuned using transfer learning. Initially pre-trained on ImageNet, the model was adapted for gestational age prediction by replacing classification layers with regression output layers, as shown in Figure 1. Experiments included single-planar and multi-planar approaches. In the single-planar phase, models were trained on individual anatomical planes, while in the multi-planar phase, data from all three planes were combined. Attention mechanisms were incorporated to focus on the most relevant areas of the MRI scans. The transfer learning process adapts a pre-trained architecture to our task, leveraging features from ImageNet. The model is trained end-to-end to predict gestational age from fetal MRI scans [5].

We developed a pre-trained VGG16 network using transfer learning to improve gestational age prediction from fetal MRI scans. The dataset included MRI scans from axial, coronal, and sagittal planes, with slices of 1, 3, and 5 selected for optimal representation of key brain features. The VGG16 model was fine-tuned, and an attention mechanism was incorporated to enhance performance. Models were evaluated using R² scores and Mean Absolute Error (MAE) in days. As shown in Table 1, multi-planar configurations outperformed single-planar setups. Specifically, VGG16 demonstrated the best performance with 5-slice multi-planar input, achieving an R² score of 0.9461 and an MAE of 5.35 days, indicating strong predictive power. The attention mechanism further enhanced performance, reaching an R² score of 0.9581 and an MAE of 4.51 days, as shown in Table 1. These results confirm that the VGG16 architecture, especially with the attention-guided approach, is highly effective in predicting gestational age from fetal MRI scans, leveraging complementary anatomical information for more accurate predictions.

The results demonstrate the effectiveness of the VGG16 architecture, particularly with multi-planar data and attention mechanisms, in accurately predicting gestational age from fetal MRI scans. The model's performance significantly improved with the incorporation of multiple anatomical planes, showcasing the value of leveraging complementary features for accurate predictions. The attention-guided approach further enhanced performance, achieving the highest results of R² = 0.9581 and MAE = 4.51 days with the multi-planar attention mechanism, focusing on critical brain regions and increasing robustness.

The VGG16 model, enhanced with transfer learning and attention mechanisms, provides highly accurate gestational age predictions from fetal MRI scans. Multi-planar data integration significantly improves model performance, highlighting the importance of leveraging detailed anatomical information for precise predictions. These findings support the potential of deep learning techniques in advancing prenatal diagnostics and providing reliable clinical tools for gestational age estimation.
Muhammad ZUBAIR (Chieti, Italy), Massimo CAULO, Cosimo DEL GRATTA
16:02 - 16:04 #47624 - PG198 Predicting a Personalized Reference Model of Lung Dynamics from 3D MRI Using Deep Learning.
PG198 Predicting a Personalized Reference Model of Lung Dynamics from 3D MRI Using Deep Learning.

Clinical diagnosis often involves comparing patient data to reference models. In the case of lung dynamics, a generic model would offer limited clinical value given the high inter-subject variability. To address this, we propose generating a personalized dynamic reference that allows for more accurate and meaningful assessments. The present work aims to predict subject-specific volumetric lung deformations from binary masks. The resulting framework produces a personalized 4D reference to enable comparison with the patient's actual breathing dynamics.

The European project V|LF-Spiro3D aims to develop and validate free-breathing 3D MR spirometry, a technique originally introduced by Boucneau et al [1] to dynamically capture lung motion, characterize function, and map ventilation throughout the respiratory cycle. Unlike traditional spirometry, which uses forced expiration and yields only global measurements, 3D MR spirometry allows regional and local analysis under natural, free-breathing conditions. This work leverages 4D MRI scans acquired from 50 healthy volunteers under the V|LF-Spiro3D clinical protocols, including both supine and prone positions across 32 respiratory phases. The lungs are segmented using the pipeline developed by Barrau et al. [2]. The complete dataset comprises 224 images and is split 60%, 20%, 20% into training, validation, and test sets, with no subject overlap between sets. To capture both anatomical shape and spatio-temporal dependencies, we extended the deep learning architecture proposed by Vaurs et al. [3], which combines a 3D CNN encoder–decoder with an LSTM. The model (fig.1) includes skip connections from the first phase (end-expiration), and from the current phase (last frame of each sub-sequence). To enhance the original architecture, we refined it by incorporating additional components. First a skip connection from the sixteenth respiratory phase was added, typically corresponding to peak inspiration. This provides a direct structural reference for target lung expansion. In a separate approach, tidal volume (TV), defined as the volume difference between the first phase (end-expiration) and the phase of maximum expansion, was introduced into the latent space. This scalar aimed to replicate the information conveyed by the skip 15 image, while maintaining the goal of predicting the full respiratory cycle from a single input phase. Different configurations were evaluated to assess the contribution of each component, including A (skip 0+skip current), B (skip 0+skip 15), C (skip 0+skip current+TV), and D (skip 0+TV). Models were trained by optimizing the binary cross-entropy (BCE) loss which measures voxel-wise classification accuracy.

In addition to BCE, performance was evaluated using several metrics: relative volume error, to quantify differences in total lung volume between prediction and ground truth; Dice score to assess volumetric overlap; 95th percentile Hausdorff Distance (HD95) and Average Symmetric Surface Distance (ASSD) to assess surface accuracy. Among the four configurations, B performed best across all metrics (figs.2&3), followed by D with slightly lower scores. Configurations A and C performed worst, though C showed marginally better results, likely due to additional physiological information from TV. As expected, errors increased at phases farther from the skip phases, however, skip connections from the current phase did not improve performance. Fig.4 illustrates 3D predictions using B on a test sample for visual assessment.

Anchoring the network at both respiratory extremes significantly improved prediction accuracy. Incorporating TV enhanced personalization by capturing individual variability without requiring additional imaging, though slightly less accurate than with the peak-inspiration image, results remained satisfactory. In future work we will apply the model for patients suffering from chronic obstructive pulmonary disease (COPD) and asthma. The predicted dynamic will be compared to the patients’ actual respiratory motion to detect deviations that are potentially linked to disease-related abnormalities. Additional strategies will also be explored to improve temporal generalization, such as scheduled sampling, which gradually replaces ground-truth inputs with model predictions during the training phase. Furthermore, demographic data (height, weight, age, gender) will be incorporated to enhance the model's ability to capture subject specific characteristics. Finally, we will build upon the current model to develop an enhanced version that can operate on grayscale images, enabling a more detailed structural representation beyond binary masks.

The proposed framework achieves accurate prediction of full 4D lung shape dynamics from a single image at end expiration, with low volumetric and surface errors across healthy subjects. These results highlight the models’ strong potential as a patient-specific reference for identifying abnormal respiratory patterns.
Georges ABOU MRAD (orsay), Damien VAURS, Xavier MAITRE, Dima RODRIGUEZ
16:04 - 16:06 #47554 - PG199 Disentangled Forward-Distortion Network for Distortion Correction in EPI.
PG199 Disentangled Forward-Distortion Network for Distortion Correction in EPI.

Susceptibility-induced distortions in echo planar imaging (EPI) can severely deteriorate image quality, affecting the performance of diffusion-weighted imaging (DWI) and functional MRI where EPI is commonly used [1,2]. Classical methods use reverse phase-encoded (PE) EPI images to estimate an anatomically correct image together with an underlying off-resonance field [3]. However, these methods suffer from long computation times due to their iterative nature, making them impractical in clinical settings. Recent advancements have focused on deep learning methods to speed up EPI distortion correction [4-5]. We previously introduced an unsupervised forward-distortion network (FD-Net) that rapidly estimates a corrected image and a displacement field using a 2D U-Net [6]. The predicted image is then forward distorted in reversed-PE directions using the estimated field. Physics-driven data consistency is enforced between the forward-distorted images and the input images for unsupervised learning. Using a single U-Net encoder-decoder architecture for simultaneously estimating a corrected image and a field map can cause anatomical details to leak into the field map. In this work, we propose Disentangled Forward-Distortion Network (DFD-Net), featuring disentanglement units in the encoder that split feature maps into separate streams that feed two separate decoders for image and field prediction. DFD-Net significantly improves distortion-correction fidelity and field map accuracy compared to FD-Net, while delivering over 200-fold computational speedup over TOPUP.

Proposed DFD-Net: To prevent anatomical image details from leaking into the displacement field, the proposed DFD-Net features a disentanglement unit that splits selected feature maps into separate streams that feed two separate decoders (see Figure 1). In the disentanglement unit shown in Figure 1(c), each selected feature map is processed via reduced singular value decomposition (SVD). Assuming larger singular values contain the majority of the high-resolution anatomical details, the largest m singular values are assigned to the image prediction stream, and the remaining ones are assigned to the field prediction stream. Here, the tunable parameter m controls the amount of activation information channeled into the image versus the field streams. By providing each decoder with disentangled skip-connections and bottleneck features, the anatomical content is forced to remain in the predicted image and not contaminate the displacement field. Learning Procedures: We used randomly selected unprocessed DWI data from the Human Connectome Project’s 1200 Subjects Data Release [7]. A total of 24 subjects were selected, split as (12,4,8) subjects for (training, validation, testing). All b0 volumes were utilized, consisting of 111 slices, 168x144 image matrix, and 6 repetitions. We compared DFD-Net with (1) FD-Net and (2) a supervised baseline that is trained using TOPUP results. All models employed the same set of hyperparameters for fair comparison. Quantitative evaluations were performed on the corrected images and field maps using PSNR and SSIM metrics, taking TOPUP corrected images and field maps as reference.

For each volume, distortion correction took ~11 seconds for DFD-Net and ~4 seconds for FD-Net, compared to ~37 minutes for TOPUP. Therefore, DFD-Net provides over 200-fold speedup compared to TOPUP. First, we varied the number of singular values assigned to the image prediction stream at different resolution levels within the encoder. As shown in Figure 2, the accuracy of DFD-Net is more sensitive to the choice of singular values at the higher resolution levels. The quantitative assessments in Figure 3 show that DFD-Net provides 2.13 dB PSNR and 5.71% SSIM improvement in field quality and 0.44 dB PSNR and 1.46% SSIM improvement in image quality over FD-Net. In addition, DFD-Net outperforms the supervised baseline with 2.06 PSNR and 21.99% SSIM in image quality. Figure 4 shows example results, demonstrating the improved correction capability and field map fidelity of DFD-Net, especially in the posterior regions of the brain. Importantly, as seen in Figure 4(c), the anatomical details are less prevalent in the estimated field map from DFD-Net when compared to that of FD-Net, demonstrating the disentanglement capability of DFD-Net.

The disentanglement capability of the proposed DFD-Net provides significant improvements in both image quality and the field map by successfully preventing leakage of anatomical details into the field map. While the supervised baseline provides higher performance for field estimation, it does not generalize well in terms of image correction as it lacks physics-based data consistency.

In conclusion, the proposed DFD-Net effectively disentangles image features from the displacement field. It outperforms its predecessor FD-Net in terms of both distortion correction and field fidelity, while providing over 200-fold speedup over TOPUP.
Muhammed Hasan KAYAPINAR (Ankara, Turkey), Abdallah ZAID ALKILANI, Emine Ulku SARITAS
16:06 - 16:08 #47636 - PG200 Time-resolved volumetric speech MRI at 35 frames per second from a one-minute CMR-MOTUS protocol.
PG200 Time-resolved volumetric speech MRI at 35 frames per second from a one-minute CMR-MOTUS protocol.

Speech and related motion patterns are complex dynamic processes in which multiple muscle groups along the upper airways interact to enable vocalization. A clinical example of the importance of imaging speech is cleft palate patients, where MRI has been proposed to assess velopharyngeal function before and after surgery(1,2). However, the motion involved in speech is challenging to capture by MRI because it generally does not exhibit periodicity and involves non-coplanar motion of the muscles of interest(3,4). (1,2)For this reason, fast MRI sequences to image speech have been typically limited to fast 2D-acquisitions that target the mid-sagittal plane to study velopharyngeal closure and sound production. However, these 2D approaches fail to capture the relevant muscle dynamics/motion outside this plane such as the levator veli palatini muscle. 3D speech imaging approaches have been developed that use non-cartesian (spiral) readouts to volumetrically resolve speech at frame-rates up to 36 frames-per-second. However, these approaches either limit volumetric coverage and resolution, or necessitate a long scan (~10 minutes) during which subjects have to repeat the same phrase, creating practical problems (5–7). In this work, we show that time-resolved volumetric speech data at 35 frames-per-second and 2-mm isotropic resolution is feasible. Importantly, this is obtained from a one minute long CMR-MOTUS(8) scan implemented with a temporally incoherent pseudo random cartesian acquisition.

We used a pseudo random temporally incoherent Cartesian sampling pattern called PR4D(9,10). This sampling strategy aims to provide uniform coverage in a given time-window. This is achieved by traversing the ky-kz plane incoherently in both the angular and radial direction which yields a sampling pattern that’s a mix between a cartesian spiral and radial filling. We generated a PR4D sampling pattern for a scan with 36000 readout lines. Over the whole scan this yielded a practically fully-sampled k-space with a higher density in the center. An example of a single time-window is shown in Fig 1a while the sampling density is shown in Fig 1b. A healthy volunteer was scanned using a 3D balanced steady-state free precession (BSSFP) sequence that featured the aforementioned sampling pattern. Imaging parameters were as follows: voxel size = 2 x 2 x 2 mm3, field-of-view = 308 x 220 x 160 (192 with slice-oversampling) mm3 (FH x AP x RL), TR/TE = 2.9/1.43 ms and flip-angle = 50 degrees. During the scan the volunteer was instructed to repeat the days of the week in english. The scans were performed on a 1.5T MRI-scanner (Philips, Best) with a 17-channel head-and-neck receive coil. 20.000 readout lines were used to reconstruct images at a frame-rate of 35 frames-per-second which corresponded to 1 minute of scan time. The CMR-MOTUS framework was used to reconstruct the time-resolved data. The CMR-MOTUS reconstruction process alternates between image reconstruction step and motion field estimation step to obtain time-resolved images from highly undersampled 3D k-space data(8).

Fig 2a shows orthogonal views of single time frame. Here, different structures such as the tongue, velum, and the nasal and oral cavity can be distinguished. A time-series of 30 seconds of fig 2a can be found here: https://surfdrive.surf.nl/files/index.php/s/0iKwm3BUBLQTdPn/download . The volumetric acquisition allowed for the generation of surface renderings which can be seen in Fig 2b while a time-series of 30 seconds can be found in https://surfdrive.surf.nl/files/index.php/s/Fyhftj4o00dnXK5/download Figure 3 shows a mid-sagittal view and a profile-plot of tongue movement. The mid-sagittal view shows the deformation of the tongue during speech, which can also be observed the 1D projection. A banding artefact can be observed on the velum (blue arrow) which originated from off-resonance during the bssfp acquisition.

The presented acquisition scheme showed high spatiotemporal resolution (2 mm/35 fps) with a whole-head coverage. Compared to state-of-the-art(6), the main advantages of our approach is a short scan time of only 1 minute and a larger volumetric coverage which enables the complete visualization of all the surrounding musculature. The current sequence can still be optimized in terms of sampling and contrast. Currently, the sampling scheme in this work used default setting provided in Joshi et al(10). However, optimization of this sampling scheme in terms of sampling density might yield further improvements in SNR and temporal resolution. In addition, the BSSFP sequence was used to maximize SNR but yielded banding artefacts and low contrast between muscle and other soft-tissue. Alternatively, an RF-spoiled T1-weighted sequence could be used, which would yield more contrast between the tissues at the cost of SNR.

This work showed that whole-head time-resolved volumetric speech imaging at 35 fps and 2 mm isotropic resolution is feasible using a 1-minute scan.
Edwin VERSTEEG (Utrecht, The Netherlands), Thomas OLAUSSON, Narjes AHMADIAN, Aebele MINK VAN DER MOLEN, Dennis KLOMP, Cornelis VAN DEN BERG, Alessandro SBRIZZI
16:08 - 16:10 #47411 - PG201 Enhanced Spinal Cord Lesion Detection in Multiple Sclerosis Using White-M atter-Nulled 3D MPRAGE with Deep Learning Reconstruction.
PG201 Enhanced Spinal Cord Lesion Detection in Multiple Sclerosis Using White-M atter-Nulled 3D MPRAGE with Deep Learning Reconstruction.

Multiple sclerosis (MS) is a prevalent inflammatory disease affecting the central nervous system, with spinal cord lesions present in about 80% of cases (1). These lesions contribute to a range of disabling symptoms including sensory loss, motor weakness, and bladder dysfunction (1). Current spinal cord imaging techniques, such as 2D T2-weighted (T2w) and 2D Short Tau Inversion Recovery (STIR) sequences, are commonly used in accordance with the international guidelines (2) but often lack the sensitivity needed to detect all lesions, particularly in the cervical spine. This study evaluates the performance of 3D white-matter-nulled (WMn) magnetization-prepared rapid acquisition gradient echo (MPRAGE) imaging combined with a deep learning reconstruction (DLR) denoising method in improving lesion visibility and detection accuracy while keeping a short scan time.

In this prospective, single-center study approved by the national review board, thirty-eight patients with relapsing-remitting multiple sclerosis (RRMS) or clinically isolated syndrome (CIS) were recruited based on these inclusion criteria: 1) age over 18 years, 2) confirmed RRMS or CIS diagnosis per 2017 McDonald criteria (3), and 3) spinal cord symptoms developed within the last 6 months. MRI exams were conducted using a 3T scanner (Vantage Galan 3T/ZGO, Canon Medical Systems, Tochigi, Japan), involving two joint sessions: one focused on the cervicothoracic spine (C1 to T5-T6) and the other on the thoracolumbar spine (T6 to L2). For both segments, the following sequences were acquired: 2D T2w Fast Spin Echo (FSE), 2D STIR, 3D T1w MPRAGE, and a 3D WMn MPRAGE sequence, which was fine-tuned from an original sequence initially optimized for differentiating thalamic nuclei (4,5). The WMn technique uses an inversion pulse to null white matter longitudinal magnetization while preserving surrounding tissue signals. Due to its short inversion time (470 ms), compared to MPRAGE (950 ms), the 3D WMn sequence has inherently lower SNR, as there's less time for magnetization recovery before reaching steady state. To address this, we consistently applied a manufacturer-provided deep learning-based denoising method. Four neuroradiologists independently assessed lesions and artifacts from C1 to L2 in randomly ordered cases. Lesion detection confidence was rated as weak, moderate, or strong; artifacts were scored from none to major. A lesion was confirmed if at least 2 of 4 raters had moderate or strong confidence. Comparisons across sequences included: 1) total lesions per spine level, 2) artifact presence and severity, and 3) lesion contrast-to-noise ratio (CNR). Normality was tested with Shapiro-Wilk, and differences were evaluated using Mann-Whitney U tests (p < 0.05). Analyses were performed in R (v4.3.3).

Most lesions were located within the cervical spinal cord (C1–C5). However, a substantial number of thoracic lesions were also observed, accounting for 28% of all lesions detected from T6 to L2 using the 3D WMn sequence (Figure 1A). Compared to other sequences, the 3D WMn sequence significantly enhanced the detection of lesions across the entire spinal cord (Figure 1A), with particularly notable improvements in the cervicothoracic segment (Figure 1B). In this region, 3D WMn enabled the detection of 62% more lesions than the 2D T2-weighted sequence (p < 0.001), 47% more than 2D STIR (p < 0.05), and 50% more than 3D MPRAGE (p < 0.01). Similarly, in the thoracolumbar segment, 3D WMn outperformed the 2D T2-weighted sequence, identifying 53% more lesions (p < 0.05). It also detected 6% and 25% more lesions than 2D STIR and 3D MPRAGE, respectively, though these differences did not reach statistical significance (Figure 1B). Figure 2 illustrates the improved lesion delineation in the cervicothoracic region with the WMn sequence. Lesions appeared sharper and more clearly defined, including lesions (arrow) that were missed on the other sequences. The thoracolumbar images are illustrated in Figure 3 similarly showing superior lesion visualization with 3D WMn. One lesion (arrow) was uniquely detected using this sequence. It also illustrates the higher amount of artefacts with the 2D STIR which impaired lesion visibility despite favorable contrast. To better understand the improved detection with WMn, we also quantified both artifact prevalence and lesion CNR. The 3D WMn sequence exhibited significantly fewer artifacts than 2D STIR in both spinal segments (Figure 4A). Moreover, it provided a significantly higher lesion CNR than all three other sequences (Figure 4B).

3D WMn MPRAGE combined with DLR is a highly effective imaging technique for detecting spinal cord lesions in MS, offering superior sensitivity due to higher lesion contrast and fewer artifacts compared to conventional MRI sequences. These findings suggest that WMn could play a crucial role in the routine evaluation of spinal cord lesions in MS, potentially improving early diagnosis and treatment outcomes.
Fanny MUNSCH (Bordeaaux), Amaury RAVACHE, Takayuki YAMAMOTO, Bei ZHANG, Marion LACOSTE, Hikaru FUKUTOMI, Pauline BUISSONNIERE, Aurelie RUET, Jean-Christophe OUALLET, Thomas TOURDIAS, Vincent DOUSSET
16:10 - 16:12 #47658 - PG202 DL-QRAGE – Model-based Self-Supervised Physics-Informed Neural Reconstruction for Fast Quantitative MRI of Water Content, T1, T2* and Magnetic Susceptibility at 7T.
PG202 DL-QRAGE – Model-based Self-Supervised Physics-Informed Neural Reconstruction for Fast Quantitative MRI of Water Content, T1, T2* and Magnetic Susceptibility at 7T.

Clinical adoption of quantitative MRI (qMRI) is hindered by lengthy acquisition and reconstruction times. The QRAGE imaging sequence, a multi-echo MPnRAGE-like sequence, acquires over a hundred contrast images at varying inversion and echo times [1]. It produces quantitative parameter maps of water content, T1, T2*, and magnetic susceptibility, achieving full brain coverage with 1 mm isotropic resolution in an acquisition time of about 7 minutes. This efficiency is achieved through a high acceleration factor of R=32. The missing k-space information is then reconstructed jointly, leveraging prior knowledge of the spatiotemporal signal evolution. However, reconstruction times can extend to several hours, posing a significant obstacle to clinical adoption. Recent advancements in self-supervised deep learning (SSL) have shown promise in reducing MRI reconstruction times from hours to seconds while maintaining or even enhancing image quality [2]. However, existing SSL methods are tailored for conventional MRI and do not fully exploit the unique characteristics of qMRI.

To address this gap, DL-QRAGE is introduced, which integrates self-supervised deep learning with a physics-informed loss function specifically designed for the QRAGE sequence. The network architecture (Figure 1A) is based on the conventional SSL architecture. Unlike conventional SSL reconstruction, the QRAGE network processes multi-contrast data as both input and output and employs a large number of intermediate channels. Additionally, it uses complex-valued convolutions and ReLUs [3]. For network training (Figure 1B), the conventional SSL approach is employed by randomly dividing the k-space data into two disjoint sets. Similar to dual-domain learning [4], DL-QRAGE is run on both sets simultaneously with the same weights, predicting the data from the other set (k-space loss) while ensuring that the reconstructed images are similar (image-space loss). Furthermore, block-Hankel matrices are constructed from the reconstructed time series, and the sum of their nuclear norms is penalized to minimize the number of exponential terms in each voxel (physics-based loss). As an ablation experiment, the model is trained using only k-space loss, with k-space and physics-based loss, and with all three loss terms. DL-QRAGE is compared to a complex-valued SSL model [2], [3], where each contrast image is reconstructed individually using a different set of weights. Hereby, all SSL models together are approximately the same size as the DL-QRAGE model. DL-QRAGE is further compared to the conventional QRAGE reconstruction. All data were acquired using a commercial 7T scanner (MAGNETOM Terra, Siemens Healthineers, Erlangen, Germany). QRAGE training data were acquired from 4 healthy subjects with an acceleration factor of R=32. QRAGE inference data were acquired from 4 different healthy subjects using an acceleration factor of R=16 and were retrospectively undersampled to R=32. Model training and inference were performed at the Jülich Supercomputing Centre, using compute nodes equipped with 4x NVIDIA A100 GPUs. Parametric maps were computed from contrast images via non-linear fitting, and UNI images were created from virtual contrast images [5]. To quantitatively assess reconstruction quality, the mean absolute error is computed between SSL/DL-QRAGE and QRAGE with R=32/16 spokes, respectively.

Compared to QRAGE, SSL and DL-QRAGE significantly reduce reconstruction time from 6-8 hours to under 20 seconds. Contrast images and UNI images from all reconstruction methods are shown in Figure 2, while parametric maps are displayed in Figure 3. The mean absolute error for all methods is presented in Table 1 for contrast images, UNI images, and parametric maps. Clearly, DL-QRAGE consistently and significantly outperforms SSL. Incorporating the Hankel loss term (P) improves image quality in nearly all cases compared to using only k-space loss (K). Additionally, including image-space loss (I) yields the best results, with mean absolute errors often closer to the R=16 QRAGE reconstruction than the R=32 QRAGE reconstruction.

While DL-QRAGE inference is computationally efficient, training remains resource-intensive due to the model's large size and substantial GPU memory requirements. Additionally, the model is challenging to train and requires small learning rates to avoid instability. Consequently, training a single model currently takes several weeks and improving training efficiency remains a key challenge.

DL-QRAGE maintains QRAGE reconstruction quality while significantly reducing reconstruction time and computational resources. This efficiency enhances the clinical adoption of qMRI, enabling timely and accurate disease diagnosis and monitoring. By addressing a major bottleneck in advanced MRI techniques, DL-QRAGE highlights the potential of combining self-supervised deep learning with physics-informed loss functions to advance medical imaging technologies and patient care.
Markus ZIMMERMANN (Jülich, Germany), Felix LANDMEYER, Jörg FELDER, Jürgen DAMMERS, Sohel HERFF, N. Jon SHAH
16:12 - 16:14 #47571 - PG203 Self-supervised deep learning based spectrum denoising in hyperpolarized 13C mri.
PG203 Self-supervised deep learning based spectrum denoising in hyperpolarized 13C mri.

Hyperpolarized 13C MRI (HP MRI) enables metabolic imaging but struggles with low signal strength and noise susceptibility [1,2,3]. Traditional denoising techniques, such as Singular Vector Decomposition (SVD) improve data quality but often fail at low Signal-to-noise-ratio (SNR) and require specific user input [4]. To mitigate this, we implemented a self-supervised deep learning approach and compared its performance to SVD-based denoising [4,5].

We adapted a self-supervised UNet denoising technique for HP MRI that has shown promising results in Raman spectroscopy and has no need for ground-truth data during training [5]. Performance was compared to SVD through simulations and real-world acquisitions. Simulated HP MRI spectra were generated by modeling free induction decay (FID) with added Gaussian noise to assess denoising accuracy. Simulation of HP MRI Spectra: We evaluated denoising performance using simulated FID signals generated from predefined metabolite-like parameters. Two sets of simulation experiments were conducted: a single-peak scenario consisting of peak A and a two-peak scenario (peak A and B). In the first scenario, signals were generated with an initial amplitude of 1.0, a T2 decay constant of 0.10 seconds, and a frequency of 10 Hz. The second scenario included an additional second peak B (initial amplitude 0.30, T2 = 0.15 s, frequency 20 Hz). Time-domain signals of 256 samples were acquired uniformly over 1.28 s. To simulate longitudinal relaxation (T1), two successive acquisitions (TP 0 and TP 1) were generated with a spacing of TR = 0.20 s, using T1 values of 1.0 s and 0.8 s for peaks A and B, respectively. The second timepoint was only necessary for SVD-based denoising, which requires a multidimensional input dataset, whereas UNet processes spectra independently. Performance of both methods was assessed at the first timepoint. Complex Gaussian noise was added at three levels, corresponding to peak-SNR (pSNR) ranges of roughly 5–9 (low noise), 2–4 (medium noise), and 1–3 (high noise) to reflect a range of possible pSNR conditions found in experimental HP MRI data (Figure 1A, C). Spectra were obtained via Fast Fourier Transform masked to 0–100 Hz, and noise was quantified in a peak-free band (50–99 Hz). pSNR was computed as the mean amplitude over the peak and its adjacent frequencies (spanning the FWHM), divided by the standard deviation of the noise band. For each scenario, we generated 5 independent simulations per noise level, each followed by 5 denoising trials, resulting in 25 replicates per noise level. Real World Data: In vivo data from a healthy mouse brain were acquired on a 9.4 Tesla Bruker preclinical MR system equipped with an RF cryocoil combined with a 1H volume coil, (FID, axial slice, slice thickness: 5mm, acquisition bandwidth: 5000 Hz, number of spectral samples: 8192, repetitions: 24, repetition time: 5000ms, flip angle: 20°). The mouse was injected with hyperpolarized [1-13C]pyruvate produced by POLARIS, a new commercially available preclinical PHIP-based hyperpolarizer.

The self-supervised deep-learning-based approach achieved a visible reduction in noise compared to noisy data and SVD in single- and two-peak scenarios (Figure 1). These findings were consistent across different noise levels with high mean pSNR improvements in high and medium noise cases (Figure 2). In scenarios involving single peaks, UNet performed reliably at high and medium pSNR but experienced noticeable degradation at lower pSNR levels, eventually failing below a certain threshold. Additionally, the UNet demonstrated improved denoising performance in the multi-peak scenario when a second high pSNR peak was present compared to the single peak scenario at medium noise levels (Figure 3). Evaluation on in vivo UCSF datasets showcased that UNet visibly suppressed noise, while restoring low-amplitude peaks, such as alanine and bicarbonate, which were difficult to distinguish in the noisy spectra (Figure 4).

Compared to SVD-based denoising, the UNet approach demonstrated superior noise suppression. In addition to that, we observed an increased performance in low pSNR regions when high pSNR peak information was present. This is especially important for HP MRI, where metabolites exhibit varying peak intensities. Additionally, the proposed method is expandable, offering further potential for optimization, for example by including information from multiple repetitions.

The presented enhancements make this deep-learning-based denoising approach a strong candidate for HP MRI. Future work will optimize models, accelerate inference, and explore clinical integration.
Konstantin MÜLLER (Ulm, Germany), Tamara VASILKOVSKA, Xiao GAO, Meetu WADHWA, Galen REED, Myriam CHAUMEL, Renuka SRIRAM, Jeremy GORDON, Ilai SCHWARTZ, Michael GÖTZ, Pascal P.r. RUETTEN
16:14 - 16:16 #45694 - PG204 SEMAC Ripple Artifact Reduction using Wavelet Domain Filtering for MR Images of Total Hip Arthroplasty.
PG204 SEMAC Ripple Artifact Reduction using Wavelet Domain Filtering for MR Images of Total Hip Arthroplasty.

Slice encoding for metal artifact correction (SEMAC) is often used for MR imaging of total hip arthroplasty to reduce metal artifacts [1]. Spectral profile combination in image reconstruction can create ripple artifacts, impacting diagnoses near implants [2,3]. While slice/bin overlap can fix these artifacts, it substantially increases acquisition time and SAR [4]. Using a B_0-field map may reduce ripple artifacts but also extends acquisition time and can leave residual artifacts [5]. Both methods are impractical in clinical settings. To address this, we developed a wavelet domain filter (WD-Filter) to reduce artifacts retrospectively without prolonging acquisition time.

Wavelet Domain Filter: Ripple artifacts as they typically occur in SEMAC exhibit a specific distinct distribution in the frequency domain (~0.5-2.0 cm^(-1)) and have a wave-like pattern in the image domain [6]. The wavelet transform (WT) provides frequency and temporal resolution, capturing frequency and spatial information [7]. The Fejér-Korovkin wavelet family with 6 or 12 vanishing moments (fk6 or fk12) shows high absolute values in the detail coefficients for ripple artifacts. Within the ROI, containing a ripple artifact, the detail coefficients were nulled using a threshold level between 12% and 45% of the peak signal. The filtering process for ripple artifact reduction is illustrated in Figure 1A. Additionally, two decomposition levels are employed to address the visible ripple artifacts in the approximation plane. The filter algorithm was implemented in MATLAB R2023b (Mathworks, Natick, MA, USA). Patient Selection / MR Imaging: In a retrospective study we included 100 patients with primary hip implants to validate the potential of the WD-Filter. The images were obtained from two 1.5T MRI scanners (MAGNETOM Sola; MAGNETOM Avanto Fit; Siemens Healthineers AG, Forchheim, Germany) at Balgrist University Hospital, Zurich, Switzerland between December 2023 and June 2024. A 32-channel spine-coil combined with an 18-channel surface-coil was used, and images were acquired with a coronal compressed sensing-based STIR SEMAC sequence (TR/TE: 5000/37ms; voxel size: 1.0x1.0mm2; slices: 28; slice thickness: 3.5mm; SEMAC spectral encoding steps: 12 or 19) [8]. Image Analysis: Two musculoskeletal fellowship-trained radiologists (R1, R2) independently evaluated the ripple artifacts by comparing the ROI of the original images to the images with the WD-Filter. They assessed the intensity of ripple artifacts using a 4-point Likert scale (Likert-RA) with the following scores: 1 = none, 2 = mild, 3 = moderate, and 4 = severe (Figure 1B). Additionally, they measured the standard deviation in a ROI containing a ripple artifact (SD_ROI) before and after applying the WD-Filter. A 4-point Likert scale (Likert-IQ) was used to evaluate image quality improvement, with scores of 1 = poor, 2 = moderate, 3 = good, and 4 = excellent. Statistics: A p-value of less than 0.05 was considered statistically significant [9]. The inter-reader agreement for Likert-RA and Likert-IQ scores was assessed using kappa statistics (Cohen's κ) as reported by Landis and Koch [10].

Ripple artifacts were detected in 66 out of 100 patients. We applied the WD-Filter for a total of 250 ripple artifacts. The Likert-RA improved significantly when the WD-Filter was applied, with an ‘almost perfect’ inter-rater agreement, and there was a significant reduction of 19% in SD_ROI. The Likert-IQ improved significantly with an ‘almost perfect’ inter-rater agreement. The evaluation of both readers for Likert-RA, SD_ROI and Likert-IQ is summarized in Figure 2. In 59 (R1) and 56 (R2) instances, the original images, initially rated with a Likert-RA score of 4 (severe), were improved to a Likert-RA score of 1 (none) after applying the WD-Filter. Additionally, in 43 (R1) and 47 cases (R2), the original images, initially rated with a Likert-IQ score of 1 (poor), were enhanced to a Likert-IQ score of 4 (excellent). An example of these improvements in both Likert scales is shown in Figure 3. Furthermore, multiple ROIs in the WD-Filter could reduce more than one ripple artifact in one slice. Figure 4 illustrates an example of a significant improvement in the Likert-RA and Likert-IQ values for two ripple artifacts.

The WD-Filter effectively reduced ripple artifacts and significantly improved the overall image quality. However, in 6% of cases, images only achieved a 'moderate' image quality due to residual artifacts, indicating that the filter may not fully address certain shapes or orientations of ripple artifacts. Adjusting the filter threshold level or considering a different wavelet could mitigate this issue.

The proposed WD-Filter reduced ripple artifacts and enhanced image quality. The ability to apply the WD-Filter retrospectively on images makes it easy to implement without any need for MRI protocol changes or sequence modifications.
Jeanette Carmen DECK (Zurich, Switzerland), Sophia Samira GOLLER, Georg Wilhelm KAJDI, Constantin VON DEUSTER, Reto SUTTER
Espace Vieux-Port

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D25
15:40 - 17:10

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Salle 120

"Friday 10 October"

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E25
15:40 - 17:10

Medical Device Regulation
MDR: a challenge for MR researchers

15:40 - 16:00 Introduction to topic and current status. Christoph BOESCH (Prof.emeritus) (Keynote Speaker, Thun, Switzerland)
16:00 - 16:20 MDR or Non-MDR: examples of categorizations; Panel. Sven GRÖZINGER (Quality Management) (Keynote Speaker, Erlangen, Germany), Mark LADD (Keynote Speaker, Heidelberg, Germany), Christoph BOESCH (Prof.emeritus) (Keynote Speaker, Thun, Switzerland)
16:20 - 16:40 There is Hope! {How to Use Generative AI to draft your Regulatory Documents in MR-trials with non CE-marked components}. Johannes SLOTBOOM (Keynote Speaker, Bern, Switzerland)
16:40 - 16:45 Bridging Innovation and Regulation: MDR Insights from the Front Lines. Ludovic DE ROCHEFORT (CEO) (Keynote Speaker, Marseille, France)
16:45 - 16:50 License to coil: MDR for gradient hardware in the Netherlands. Chantal TAX (Associate Professor) (Keynote Speaker, Utrecht, The Netherlands), Jannie WIJNEN (Keynote Speaker, Utrecht, The Netherlands)
16:50 - 16:55 Using an MRI-compatible accelerometer for clinical studies: the French experience. Karyna ISAIEVA (research engineer) (Keynote Speaker, Nancy, France)
16:55 - 17:00 Experience in Germany: a partial view. Mark LADD (Keynote Speaker, Heidelberg, Germany)
17:00 - 17:10 Discussion and wrap up of session. Christoph BOESCH (Prof.emeritus) (Keynote Speaker, Thun, Switzerland)
Salle 76

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G25
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Poster 5
FT3 - Ultra-low & Ultra-high field | FT3 - Artifacts and imperfections | FT1 - Technologies for motion

15:40 - 17:10 #45946 - PG411 Open-source quality control procedures for low-field MRI.
PG411 Open-source quality control procedures for low-field MRI.

Quality control (QC) procedures in medical imaging are mandatory[1-3] to achieve reproducible results, which become even more important when the system hard- and software may change such as in open-source low field MRI developments of the OSI² ONE MRI scanner[4]. QC frameworks should be easy to employ, allow for longitudinal comparisons and should be sensitive to hardware, software and environmental changes. QC may differ between initial extensive protocols, fast protocols for routine QC and sophisticated protocols to target specific metrics. We here present a routine QC protocol which helps with the developments of a low field MRI system and comparability/reproducibility of different low-field MRI scanners and is sensitive to spatial as well as temporal system instabilities which may infer image quality.

Open-source QC procedures were implemented including a 3D printed “Hello World” phantom (deionized water with 1.5g/L CuSO4), a reproducible positioning system of the phantom and RF coil, pulse sequences and post-processing routines.[5, 6] Imaging was performed at the 47.5mT OSI2 ONE v1[4, 8] (PTB, Berlin, Germany) including RF coil load tuning (<-20dB) and static linear shimming with calibrated gradient offsets.[8] A 3D turbo-spin echo sequence was developed in PyPulseq[7], imaging parameters are given in Table 1. The read-out (RO) direction was along B0. Phantom data was acquired for 12 consecutive repetitions. Additionally, a volume without RF excitation was acquired for noise measurement. Images were reconstructed using 3D Fourier transformation. QC metrics were derived from a homogenous coronal slice using an eroded phantom mask. Image quality was assessed by spatial SNR (ratio of mean phantom signal and standard deviation of noise measurement) and temporal SNR (ratio of voxel-wise mean and standard deviation over repetitions). Spatial fidelity was assessed by signal uniformity inside the phantom (range normalized by mean). Larmor frequency drifts during repeated QA scans were assessed using the phantom position within the image (frequency offset causes image shift). In addition, Larmor frequency was measured before and after QC.

Figure 1 shows the experimental setup of the low-field MR scanner, including the positioning system to ensure iso-center positioning with high repeatability. Moreover, three planes of the phantom based on QC 3D-TSE sequence are shown. The coronal slice demonstrates the printed features of the phantom including axis asymmetry and a reference point on the right side. In Figure 2, the visual results of the quality control protocol are shown. The mean image indicated signal inhomogeneity along the RO direction while temporal variations were strongest at the phantom periphery (temporal SNR = 15.8). The automatically determined phantom center (blue) showed a slight off-center position (red). Two distinct electromagnetic interferences were visible in the scan, which increased the overall noise level (mean=6.1, std=3.5). Figure 3 presents QC metrics over repetitions. Spatial SNR (mean=19.5) decreased over time whereas signal uniformity (mean=39.3%) did not show a trend. An increasing off-center shift along the RO direction (0.18px/repetition) was measured but not along phase-encoding directions. The Larmor frequency was increased by 720 Hz after QC scans.

We present a QC protocol to monitor the performance of low-field MR systems. QC data can be collected frequently to assess the impact of hardware or software modifications or to optimize MR sequences. The phantom, positioning system, sequences, raw data and analysis pipeline are made available open-source.[5, 9] The QC analysis revealed an inhomogeneous signal distribution along the RO direction which could be due to the narrowband tuning of the RF coil. The linear regression revealed a shift of the phantom possibly due to Larmor frequency drifts induced by temperature changes. This is particularly relevant for signal averaging typically used to improve SNR in in-vivo imaging. The noise scan showed RF interferences which were also visible in the phantom data. As the MR scanner was operated outside an RF shielded room, the sources still need to be identified; SNR decreased across repetitions which could be due to a shifted Larmor frequency in conjunction with the narrowband tuning of the RF coil. A wideband tuning of the RF coil or an automatic coil matching/tuning to an updated Larmor frequency could resolve the issue.

In conclusion, our results demonstrated the importance of a QC protocol for low-field MR development. Based on a few metrics, we identified important system characteristics. In the future we will be able to track better the influence of system modifications or environmental changes on the system’s performance. Sharing not only the QC sequences but also the phantom design should facilitate QC comparisons across different systems and enlarge the library of available QC procedure for dedicated system performance monitoring.
Helge HERTHUM (Berlin, Germany), David SCHOTE, Ilia KULIKOV, Frintz JAN GREGOR, Tobias MOHR, Sebastian SCHACHEL, Christian ENGLER, Stefan HETZER, Christoph KOLBITSCH, Lukas WINTER
15:40 - 17:10 #45623 - PG412 Accelerated Combined caLculation of Ultra-high field Biases (CLUB) with Sandwich: 3D, fast, simultaneous mapping of B0 and B1+ inhomogeneities at 7T.
PG412 Accelerated Combined caLculation of Ultra-high field Biases (CLUB) with Sandwich: 3D, fast, simultaneous mapping of B0 and B1+ inhomogeneities at 7T.

While ultra-high field (UHF) MRI offers improved signal-to-noise ratio compared to lower field strengths [1], its inherently stronger B0 and B1+ field inhomogeneities can result in signal dropouts [2]. Although solutions, such as parallel transmission (pTx) [3], have been developed to mitigate these inhomogeneities, online mapping of B0 and channel-wise B1+ fields is often required. To reduce this additional scan time, a rapid 3D method, CLUB-Sandwich [4,5], was recently developed for simultaneous B0 and B1+ mapping at UHF, and deep learning (DL) image reconstructions were explored to accelerate B1+ mapping [6]. In this work, we investigate accelerating the CLUB-Sandwich sequence using a DL reconstruction to acquire accurate ΔB0 and multi-channel B1+ maps in under 10s.

Study Population and Image Acquisition Ten healthy volunteers (five female, age range=[25-41]y/o) were scanned at 7T (MAGNETOM Terra.X, Siemens Healthineers, Forchheim, Germany) with an 8Tx/32Rx head coil (Nova Medical, Wilmington, USA). For each subject, a 3D coil-cycled multi-channel fully sampled acquisition of relative B1+ maps followed by a fully sampled 3D CLUB-Sandwich research application sequence for simultaneous B0 and absolute B1+ mapping was acquired (see Fig.1 for sequence diagram and parameters). In 3 subjects, the CLUB-Sandwich sequence was also prospectively accelerated (R=4 and R=8) using Poisson disk undersampling [7]. An MP2RAGE sequence [8,9] was acquired as anatomical reference. Image Reconstruction and ΔB0 and B1+ Mapping The fully sampled datasets were retrospectively undersampled using Poisson disk masks with different accelerations (R=2, 4, 6, 8, 10, 12). Data were then reconstructed using two methods: a joint transmit low rank reconstruction algorithm (TxLR) [10,11] and a DL approach [12], which were compared to the fully sampled reference data. Reconstruction times were also compared to investigate feasibility of online implementation. The performance of the proposed DL approach was further validated on the prospectively acquired data. The TxLR method enables joint reconstruction of undersampled data using structured low-rank tensor completion [11]. To exploit redundancy across contrasts, pseudo-complementary masks were generated by modifying the seed of the Poisson disk generator, as optimized in previously validated methods [10]. The DL reconstruction, based on variational networks [13], reconstructs 3D images from undersampled k-space data through 6 iterations of data consistency updates and network-based image regularization. The model was pre-trained using 5000 pairs derived from fully-sampled 3D datasets from healthy subjects scanned at 1.5 and 3T, and fine-tuned for 7T using 1000 pairs [12]. ΔB0, absolute, and channel-wise B1+ maps were then computed from the reconstructed contrasts, following the same procedure reported in previous studies[5]. Image Analysis ΔB0 and B1+ accelerated maps from CLUB-Sandwich data were compared to the fully sampled reference by analyzing the volumetric root mean squared error (vRMSE) in brain tissues segmented from the MP2RAGE datasets using a research application software[9,14,15].

Fig.2 shows ΔB0 and absolute B1+ maps for a representative subject at a retrospective acceleration of R=8, reconstructed using both TxLR and DL algorithms. The corresponding differences to the fully sampled reference demonstrate similar vRMSE. TxLR exhibits oversmoothing in regions with stronger inhomogeneities, while the DL approach yields slightly noisier estimates. vRMSE values for retrospective data across all subjects as a function of R are shown in Fig.4. DL achieves comparable performance to TxLR for ΔB0, absolute and relative B1+ estimation. Although TxLR presents marginally better accuracy in all three cases, DL requires only 5s of reconstruction time compared to the 4 minutes required by the TxLR. Prospective DL acceleration results for an illustrative subject are shown in Fig.5. Across the 3 prospective datasets, vRMSE in the absolute maps were found to be 3.2±0.8 Hz and 2.0±0.8° for R=4, and 4.3±0.9 Hz and 2.8±0.9° for R=8, consistent with retrospective results.

The proposed DL reconstruction enables accurate acceleration of the CLUB-Sandwich method, offering rapid simultaneous ΔB0 and B1+ mapping with performance comparable to fully sampled data and previously validated techniques [10]. By reducing acquisition and reconstruction times to 9s and 5s, respectively, the approach supports real-time implementation at the scanner, enhancing efficiency of UHF workflows. Prospective results validate the ability to generate reliable B0 and B1+ maps in under 10s.

This work validates a DL reconstruction approach for accelerating inhomogeneity mapping at UHF, maintaining accuracy while reducing scan time. Future work will focus on demonstrating the reliability of the estimated maps for online in vivo pTx optimization at 7T and exploring the impact of a DL-based joint reconstruction across the acquired contrasts.
Natalia PATO MONTEMAYOR (Lausanne, Switzerland), Jocelyn PHILIPPE, James L. KENT, Aaron HESS, Antoine KLAUSER, Emilie SLEIGHT, Lina BACHA, Tommaso DI NOTO, Bénédicte MARÉCHAL, Patrick A. LIEBIG, Juergen HERRLER, Dominik NICKEL, Robin M. HEIDEMANN, Tobias KOBER, Jean-Philippe THIRAN, Tom HILBERT, Thomas YU, Gian Franco PIREDDA
15:40 - 17:10 #47639 - PG413 Spatial-spectral parallel transmission RF pulses design for adiabatic spin inversion.
PG413 Spatial-spectral parallel transmission RF pulses design for adiabatic spin inversion.

In NMR and MRI, adiabatic RF pulses – characterized by a linear RF frequency sweep – improve drastically tolerance to heterogeneous B0 and B1 fields over ordinary linear phase pulses [1]. Parallel transmission (pTx) is a recent evolution of the RF hardware of MRI where RF transmission is accomplished with an array of resonators driven independently over time [2]. Owning to Pauly’s concept where RF and MFG shape are applied in concert to control spatially the spin system’s excitation profile [3,4], pTx offers a practical (short excitations) low-SAR alternative to frequency sweeping. Nevertheless, Pauly’s spatial pulses on their own do not replace at all adiabatic pulses because they lose in general a clean spatially invariant spectral definition, a prerequisite in many applications, in particular, slice selection. Recently, a method to create 3D composite adiabatic pulses exploiting the full pTx capability of the system was described [5,6]. In essence, this method is a pTx variant of the spatial-spectral pule design concept [7]. They first choose the so-called parent pulse defining the desired spectral profile, e.g the hyperbolic-secant adiabatic (HS) pulse. Second, they compute a short 2D-selective pTx spatial pulse using the spatial domain method [8]. Third, they form a train of the latter pulse and modulate the RF amplitude of each Tx channel using the parent pulse’s RF shape. This technique was shown to enable B1 and B0 insensitive 3D-selective inversion in a short time. In this work, we revisit this approach with a HS parent pulse (bandwidth B) and a short (T=200us, BT<<1) non-selective pTx “modulating” pulse yielding here a uniform flip angle profile. We show that the composed pulse continues to behave like an HS (the parent shape) with the advantage that the modulating subpulse promotes the fulfillment of the adiabatic condition [1] uniformly across space. Under difficult experimental conditions – particularly, in this work the absence of circular symmetry in the Tx array arrangement – where static RF shimming [9,10] becomes inoperant to maintain the adiabaticity condition across the entire volume of interest, the proposed approach appears constructive, and potentially very useful.

Let w be the parent waveform and p=(g,v) be a candidate spatially uniform 1° non-selective spatial pTX pulse of duration τ (g is the B0 gradient shapes in x, y and z and v is the RF shapes on each TX channel), with g self-refocused (i.e. ∫g(t)dt=0). Let Cτ be the τ–periodic Dirac comb distribution. We define the product pulse as: W∶=(Cτ ∗ g, λ(Cτ w) ∗ v) (Eq. 1) with ∗ the convolution product and λ an adjustable positive RF scaling factor. We can show that this so-called product pTx pulse performs uniformly across space, and frequencies within the [-0.5/τ,0.5/τ] frequency band. We note that the ∫g dt =0 condition is important to ensure that the propagator of p [11] has a transverse rotation axis. An experimental validation of this pulse design approach was performed on a Magnetom 7T MRI (SC72, 8x1kW), using the home-made “Avanti2” 8Tx32Rx head coil prototype [12]. For the parent pulse, we used a 10-ms HS inversion pulse with β=5 and B=1kHz. Measurements were performed on 16 cm-diameter spherical phantom filled with agarose (εr=72, σ=0.8S/m). The B0 and B1+ measurements were performed using a multi-echo 3D GRE and an interferometric 2D SatTFL acquisition (5 mm isotropic resolution) [13]. The 8 B1+ profiles, the combine mode (CM) B1+ profile, and the RMS B1+ profile are displayed in Fig.1. A 1°, 200µs spatial subpulse was designed using fastGRAPE [14] (Fig.2a). Application of Eq.1 (λ adjusted to yield the same peak amplitude as the parent shape) produced the product pTx HS pulse shown in Fig.2b. Finally, a preliminary validation of this approach was performed with a 3D MP2RAGE acquisition (TR/TI1/TI22=3.3/0.83/2.5 s, FA1/FA2=4/2 deg).

The pTx modulating pulse yielded a flip angle normalized RMS error (NRMSE) of 16.2%. Retrospective flip angle simulations for the pTx modulating pulse, the CM-HS pulse (NRMSE = 17.3%, energy=8.7J), the product pTx HS pulse (NRMSE=5.2%, energy=9J) and two slice selective (3cm and 1cm slice thickness) derivatives of the latter are shown in Fig. 3. While the HS pulse fails to invert the magnetization in the regions indicated in Fig.1, the product pulse’s inversion efficiency is uniformly high across the entire object. Slice selection is feasible using the product pulse for the 3cm but not the 1cm case due to the 1/200us cutoff frequency, leading to slice replicas in 5cm interval in this case.

We have shown a methodology to exploit dynamic pTx to leverage the performance of the hyperbolic secant adiabatic pulse in the presence of heavily non-uniform B1 profiles. This strategy could be important for imaging at ultra-high fields were standing wave effect can hinder many applications [15,16].
Vincent GRAS (France), Natalia DUDYSHEVA, Franck MAUCONDUIT
15:40 - 17:10 #47030 - PG414 Experimental validation of a simulation model for minimizing eddy-current-induced fields in low-field MRI.
PG414 Experimental validation of a simulation model for minimizing eddy-current-induced fields in low-field MRI.

Low-field MRI systems are especially vulnerable to electromagnetic interference, reducing image quality and signal-to-noise ratio (SNR). Conductive shieldings mitigate these effects but also induce eddy currents that distort the magnetic field [1]. In portable MRI systems [2], these issues are amplified by operation in uncontrolled environments and the use of lightweight, low-cost structures. Understanding how surrounding metal affects the field in the field of view (FOV) is thus key for the design of mechanical structures in MRI scanners. This study presents a frequency-domain simulation framework, which we have validated with controlled experiments.

Eddy currents were studied using a frequency-domain FEM model in COMSOL. While time-domain simulations can reproduce realistic transient signals, they are computationally expensive. Some frequency-domain methods simulate multiple spectral components via Fourier decomposition of the gradient waveform [3] but require fine meshes to capture high frequencies [4]. Instead, we use a single fixed frequency, set as the inverse of the gradient fall time, to capture trends and enable fast parametric sweeps. While other approaches aim to generally reduce eddy current density in nearby conductors [5], ours targets B_eddy directly in the FOV and focuses exclusively on suppressing the relevant components, i.e. along B₀. This gives us an effective basis for optimization. The model was validated by placing the scanner magnet and gradient coils in an open environment, free from metallic structures. Aluminum plates in various shapes (solid and frame-like) were placed around to induce eddy currents in a controlled manner (Figure 1). To simplify comparison with simulations, the field was evaluated at the isocenter, where the gradient field is zero, so only eddy-induced fields are present. To replicate this condition, a one-loop circular RF coil (1 cm diameter) was used to confine the signal acquisition region and minimize spatial-integration effects. To measure the B_eddy, a 10 mT/m gradient pulse was applied, with a 400 µs ramp-down preceding signal acquisition. The field was retrieved from the phase difference between positive (ϕ+(t)) and negative (ϕ-(t)) gradient polarities [6]: B_eddy (t)=(1/γ) * d/dt ((ϕ+(t)-ϕ-(t))/2) Simulated values were compared to the value of the B_eddy curve just after the ramp down (t=0). Only the component along B₀ was considered in the simulations, as it is the only that affects the free-induction-decay (FID) signal. After validation, the model was extended to simulate the field across the FOV. Eddy-induced contributions were isolated by subtracting a baseline simulation, without metallic elements, from the ones including them. This enabled spatial mapping of B_eddy for identification of geometries that minimized eddy effects in the entire FOV.

Figure 2 shows numerical and experimental results for an aluminum plate displaced along the X-axis (Figure 1b). Simulations predicted the worst position at a 100 mm offset for the X-gradient and a doubling of the induced field when a second plate was added symmetrically (Figure 1c). For the Y-gradient, both simulations and experiments showed negligible effects. They also correctly predicted the worst case for the Z-gradient, with the plate at the center. Figure 3 shows the spatial variation of eddy currents across the FOV for two plates displaced along X in the Z-gradient case. Figure 4 shows the numerical results of the FOV-averaged B_eddy for that case.

Simulations with metallic plates displaced along different axes correctly predicted the worst positions, i.e. those that caused the strongest field perturbations at the magnet center. Simulated and measured values across different scenarios are repeatedly consistent up to a constant factor. This repeatability is the relevant metric to benchmark the performance of our approach, not its magnitude, as we simulate a continuous sinusoidal excitation rather than the applied trapezoidal pulse. Finally, extending the analysis to the full FOV is essential, since relying only on the central field may lead to the false conclusion that eddy currents cancel out. This can be observed in Figure 4 for the case of two plates, where the field is nulled only at the center.

A frequency-domain FEM model was validated experimentally for evaluating eddy currents in low-field MRI. In all cases, it identified which geometric configurations produced the strongest fields at the scanner center. Its computational efficiency enables rapid parametric studies. By extending the analysis across the full FOV, the method provides insight into how surrounding metallic components influence the B₀-oriented eddy fields, enabling design optimization explicitly aimed at preserving image quality.
Lorena VEGA-CID (Valencia, Spain), Marina FERNÁNDEZ GARCÍA, Jose BORREGUERO, Teresa GUALLART-NAVAL, Eduardo PALLÁS, Lucas SWISTUNOW, Jose Miguel ALGARÍN, Fernando GALVE, Joseba ALONSO
15:40 - 17:10 #45919 - PG415 Introducing a model for predicting acoustic energy in EPI and its correlation to ghost correction at 7T and 10.5T.
PG415 Introducing a model for predicting acoustic energy in EPI and its correlation to ghost correction at 7T and 10.5T.

Echo-Planar Imaging (EPI) is the workhorse of functional MRI. It drives the system aggressively, quickly alternating the currents through the gradient coils. Alternating gradients lead to mechanical vibrations due to the B0 magnetic field applying a Lorentz force. These vibrations produce the well-known MRI sounds, may cause ghosting artifacts, and possibly even mechanical failure. All these are exacerbated at ultra-high fields (as higher B0 means stronger Lorentz forces). New hardware designs aim to reduce vibrations[1-3], but in software, the current approach is to “forbid” certain frequencies, assuming a single driving frequency of one over twice the EPI’s echo-spacing (ESP). In practice, however, multiple audible frequencies arise. In this study, we present a model that predicts these frequencies and suggests that subtle timing changes — of TEs (in case of multi-echo acquisitions) or slices — can affect the acoustic spectrum and imaging ghosts. A procedure to estimate mechanical resonance “amplification” is built, thus estimating also the expected acoustic energy for a specific EPI scan. The combined model can be used to reduce the overall strain on the system. We also examine the correlation between the acoustic characteristics and the ghost correction, which improve our understanding and help to reduce ghost intensities[4-6]. The acoustic energy characteristics and the mechanical resonance “amplification” were studied for 7T and 10.5T scanners, demonstrating the ability to reduce acoustic energy and ghost intensity in both.

The analytic model presented here considers only the echo train readout gradients, modeling them as finite sinusoidal or trapezoidal echo-trains, split between N_"echo" TEs (when relevant) and N_"slice" slices. To assess the actual effect of timing-changes we implemented an EPI pulse sequence with a per-TR control of slice timing, on/off switching of specific gradients, and an option to shift the navigators timing. The estimation of the system’s “amplification” included the following key points: Audio recorded multiple scans with a range of ESPs and time between slices. Only the readout gradients during the echo trains were on, to best match the (trapezoid-based) model. Short echo-trains were used to achieve wider spectra. The “amplification” was calculated as a ratio between the actual FFT of the audio recording and the model spectrum. Phantoms were scanned on a 7T MRI (Terra, Siemens) with a Nova 1Tx/32Rx coil and on a 10.5T (Siemens) MRI with a 16Tx/80Rx head coil[7]. The same scans were tested in human scanning at 7T. Audio was recorded using OptiSLM 100 (OptoAcoustics) at 7T MRI and with Bruel and Kjaer Type 2237 SPLmeter at 10.5T.

Fig. 1A shows the acoustic spectrum squared predicted by the model. Here two ΔTE (timing between echoes) and ΔTslice (timing between slices) cases are shown – i) “arbitrary” (top) and ii) on the “2ESP-raster”, i.e. ΔTE and ΔTslice are multiples of 2ESP. Also shown are the factors whose product makes up the model: the single echo-train contribution (yellow), the multi-echo factor (purple), and the multi-slice factor (green). The waveform on the 2ESP-raster results in a dominant peak at 1/2ESP, instead of several peaks. Fig. 1B shows the estimated mechanical resonance “amplification” measured at 7T with a small surface coil and with the Nova coil, and at 10.5T with a head coil. Three high amplification zones are observed near the system “forbidden frequencies” zones (the Nova coil setup shows higher amplifications). The 7T and 10.5T amplification profiles display certain level of similarity, as expected, since the same gradient coil is employed in both. Fig.2 shows significant changes in the acoustic energy, measured and predicted, as a function of ΔTslice. Two cases are demonstrated - i) ESP=0.53 ms, useful for fast acquisitions, whose first harmonic falls in a high amplification zone, ii) ESP=1.26 ms, useful for high resolution, whose third harmonics falls in a high amplification zone. Fig. 3 shows acoustic energy and ghost intensity as function of navigator and slice timings. Fig. 4 shows sample of in-vivo results.

A model-based prediction of the acoustic frequencies in EPI was developed. The model predicts well the acoustic peak locations and shows similar trends of the energy changes as function of timing between slices. We built a method to characterize the mechanical resonance “amplification” of the system, examining it in 7T and 10.5T MRI. The results show that small timing changes (≲2·ESP, few ms) can have significant effects on acoustic energy by up to a factor of ~3 and on ghost level by up to a factor of ~5; exhibiting similar behavior at 7T and 10.5T. The ghost correction in both systems exhibit strong dependence on the timing from the previous acquisition and scan’s acoustic characteristics. Further study of the exact correlation between ghosts and acoustic spectra is required.
Amir SEGINER, Alexander BRATCH, Noam HAREL, Essa YACOUB, Rita SCHMIDT (Rehovot, Israel)
15:40 - 17:10 #47759 - PG416 Improving SNR in areas of high inhomogeneity in Ultra-Low Field MRI using Composite Refocusing Pulses.
PG416 Improving SNR in areas of high inhomogeneity in Ultra-Low Field MRI using Composite Refocusing Pulses.

Ultra-low field (ULF) magnetic resonance imaging (MRI) offers advantages over high field (HF) MRI, including increased accessibility, reduced costs, and portability [1]. However, since MRI signal scales with the magnetic field strength, ULF MRI inherently suffers from reduced signal-to-noise ratio (SNR) compared with HF scanners, thereby limiting its clinical application [2]. The low SNR is reduced further by two additional factors: (1) field strength inhomogeneity (ΔB₀) is significant due to the magnet design in ULF systems; (2) radio frequency (RF) field strength inhomogeneity (ΔB₁) where, for example, a 20% drop is observed at inferior regions of the brain near the edge of the coil. Composite refocusing pulses (CRPs), consist of a series of contiguous RF pulses with varying amplitudes and/or phases. CRPs have been employed in HF nuclear magnetic resonance (NMR) spectroscopy to mitigate issues related to ΔB₀ and ΔB₁, thereby improving SNR relative to that of simple square pulses. While CRPs have been used extensively in NMR spectroscopy, their use for in vivo imaging at HF has been restricted due to the high specific absorption rate (SAR) associated with these pulses. At ULF, however, SAR is substantially lower than at HF [3], enabling the potential application of CRPs for enhancing image quality. Here we consider the 3D Turbo Spin Echo (TSE) sequence - the most commonly used sequence in ULF MRI. Each of the three CRPs shown in Table 1 replaced the square refocusing pulses, and these were compared to square refocusing pulses to assess imaging in both phantom and in vivo scanning in the presence of ΔB₀ and ΔB₁.

Equipment: Data were acquired on a Multiwave MGNTQ 50mT [8] at CISC in Brighton, UK, and a custom-built 47mT scanner [9] at University of Leiden, NL, both equipped with Halbach permanent magnet arrays and using a solenoid head coil and a Kea2 Magritek spectrometer [10]. In vivo data was acquired on the MGNTQ system. ΔB₀: CRPs were implemented in a 1D spin echo pulse sequence, using a NiCl solution (12.5 mL, 10mM). To assess CRP performance in the presence of ΔB₀, off-resonance conditions were created by modulating the centre-frequency of the spectra in the range of ± 2.75kHz in increments of 0.050kHz. ΔB₁: To assess the effect of ΔB₁, refocusing pulse amplitudes were modulated from the experimentally-determined optimum for both square pulses and CRPs, in the range B₁/B₁ₒₚₜ=ζ =0.55 to ζ =1.45 in increments of ζ =0.01. The spin echo signal intensity was used to assess the performance of the CRPs compared to that of a square pulse using a solution of water and CuSO₄ of 200mL. In vivo ΔB₀: TSE data was collected on the brain of a 42-year-old female. The effect of CRPs was assessed by measuring SNR change, with respect to square refocusing pulses, in two regions-of-interest (ROIs) of low (Fig. 2; ROI1) and high (Fig. 2; ROI2) ΔB₀, respectively. ROIs were identified using a B₀ map (Fig. 2a) co-located with the TSE volumes . To assess overall signal intensity across the entire brain, whole-brain histograms were plotted for each CRP (Fig. 3). A brain extraction tool (BET) [11] with manual cleanup was used.

B₁ inhomogeneity: LF and LT exhibited greater insensitivity to ΔB₁ while SP showed little improvement over square (Fig 1a). B₀ inhomogeneity: In vivo, areas of low ΔB₀ (Fig 2a; ROI1, average ΔB₀ = -36Hz), LT and SP boost SNR by 13% and 11%, respectively, while LF shows a slight reduction in signal (Fig. 2c). In areas of high ΔB₀ (Fig 2a; ROI2, average ΔB₀=-1700 Hz), both LF and LT boost SNR by over 40% while SP has a smaller but notable improvement (Fig. 2c). The whole-brain histogram (Fig. 3) showed up to 18% increase in the histogram peak height for all CRPs, which suggests signal inhomogeneity is reduced across the entire brain, presumably due to improved ΔB₀ and ΔB₁ compensation. There was also a shift in the histogram position by 4% for LT, indicating a general increase in voxel intensity across the brain.

There was significant increase in signal up to 42% in areas of high ΔB₀ (ROI 2) where CRPs supplanted square refocusing pulses in a TSE sequence. LT showed the highest SNR increase in both ROI1 and ROI2 (Fig. 2) out of all refocusing pulses, evidenced by the corresponding shift of the whole brain histogram (Fig. 3). This increase could be partially due to LT SNR increase in areas of high ΔB₁. However, more experimentation is needed to fully disentangle the causal factors.

This work highlights the potential for boosting SNR in ULF MRI through the use of CRPs. There is a significant increase in SNR across the whole brain particularly in areas of high ΔB₀. LT showed the largest SNR increase of all refocusing pulses evaluated. This improvement is significant, as CRPs can be incorporated into any sequence which makes use of refocusing pulses and thus it offers the potential for improving the utility of ULF MRI. In future work we plan to investigate CRPs for use with surface coils, which exhibit higher levels of ΔB₁.
Finn AUBREY CONBOY (Brighton, United Kingdom), Samira BOUYAGOUB, Itamar RONEN, Ivor SIMPSON, Chloe NAJAC, Nicholas G DOWELL
15:40 - 17:10 #47951 - PG417 Optimization of tailored ptx spokes pulses for simultaneous multi-slice fmri with pypulseq at uhf.
PG417 Optimization of tailored ptx spokes pulses for simultaneous multi-slice fmri with pypulseq at uhf.

Ultra high-field MRI promises massive improvements in spatiotemporal resolution, but suffers from inherently inhomogeneous B₁⁺ fields. The adaptation of parallel transmit (pTx) technology has long been investigated as effective mitigation of both transmit and main field inhomogeneities. However, in order to leverage these benefits they must be implemented in modern sequences. Simultaneous multi-slice (SMS), or multi-band imaging has been a staple of functional imaging due to the reduced g-factor noise penalty at high acceleration factors. However, combining custom pTx pulse designs with vendor supplied sequences proves difficult due to several technical limitations. To address this issue, we recreate a vendor SMS GRE-EPI sequence in PyPulseq [1,2,3] and implement subject-tailored pTx spokes pulses.

The design of our pulses is based on the spatial domain method with small tip angle approximation [4], solving the magnitude least squares problem in 20 iterations [5]. The k-space trajectory is optimized by sampling a set of up to 10,000 spoke combinations, where the first positions are uniformly sampled from −10 m⁻¹ ≤ kₓᵧ ≤ 10 m⁻¹ and the last spoke is placed at the center of k-space. Pulse energy is controlled via Tikhonov regularization and the best pulse is selected based on minimum normalized root mean square error (nRMSE) of flip angle deviation. In order to enable fast online computation, large batches of spoke combinations are optimized in parallel on a modern GPU. Due to multi-band pulses being the complex sum of single-band pulses with a frequency offset, the optimization problems for each band may be viewed independently. However, if no regulation is applied, adjacent slices frequently exhibit different inhomogeneity patterns that do not align spatially, leading to zebra stripe artifacts in slice direction. To mitigate this problem, the input slab for the optimization is chosen slightly thicker than the actual excitation, leading to improved stability and continuity at the slab borders. A blipped-CAIPI [6] sequence with SMS factor 3 and CAIPI shift d_z = 1 was implemented in PyPulseq and the standard excitation pulse replaced by arbitrary pTx multi-band spokes pules. The bandwidth of multi-band pulses is rather high due to the frequency offset between the bands being explicitly encoded as phase evolution. As this may cause aliasing with the default RF raster time of 10 us, the Pulseq interpreter requires minimal modification to accept finer raster times, such as 2 us. Furthermore, the current version v1.5.0 does not officially support pTx pulses, but a convenient hack to the interpreter proposed by Dario Bosch simply adds the channel dimension to pulse waveforms. As the use of sequence labels in Siemens online reconstruction is vaguely documented at best, a 2D GRAPPA-based [7] offline reconstruction was developed to leverage the a priori information of the sequence such as the CAIPI pattern.

Simulations using a database of in vivo B₁⁺ and B₀ maps (n = 14) demonstrated significant improvements in excitation homogeneity with the proposed methods (Figure 1). Compared to CP mode (mean nRMSE = 23.6%), 2-spoke bipolar pTx pulses reduced flip angle error to 13.6% when optimized for 13 mm slabs with 33% overlap. Tailored RF shims and monopolar spokes achieved intermediate performance. Preliminary results from a single in vivo scan compare CP mode with a single spoke pTx pulse. We map the temporal variability by computing the voxel-wise standard error over nine repetitions after three dummy scans, as shown in Figure 2. While the error is consistent across slices in CP mode, the pTx pulses exhibit some positional dependency with regard to their stability.

Parallel transmission offers great advantages and may even be necessary at 9.4 T and beyond for anatomically or functionally demanding regions of interest. Yet technical challenges remain. Subject tailored pulses demand a significantly longer pipelines and may not be worthwhile compared to good universal pulses. The use of custom, open-source sequences however adds flexibility and reproducibility that is invaluable in our opinion. Furthermore, the sequence proved to be more performant that the vendor sequence with room for improvement by implementing ramp sampling, asymmetric spokes or fine-tuning dwell time and spoiling. To ensure compatibility, the aforementioned hacks need to be refined and implemented in the official Pulseq interpreter.

This work demonstrates the technical feasibility and performance advantages of using subject-specific, GPU-optimized pTx spokes pulses in a custom SMS GRE-EPI sequence at 9.4 T. While the method shows strong potential in both simulation and initial in vivo results, widespread deployment will require further development of the Pulseq framework and improved hardware interfacing. These efforts are critical for making fast UHF acquisition techniques reproducible, portable, and clinically relevant.
Tim HAIGIS (Tübingen, Germany), Dario BOSCH, Klaus SCHEFFLER
15:40 - 17:10 #47673 - PG418 Computational EM Simulation of Microscopic Graphene-Based Electrophysiology Probes at 7 Tesla MRI: Acceleration Using a Huygens' Box-Based Approach.
PG418 Computational EM Simulation of Microscopic Graphene-Based Electrophysiology Probes at 7 Tesla MRI: Acceleration Using a Huygens' Box-Based Approach.

Concurrent electrophysiological fMRI recordings are a powerful technique that simultaneously records electrical brain activity and hemodynamic changes, providing valuable insights into normal and pathological brain states. This multi-modal technique poses challenges, including metal-based artifacts from conventional probes that distort MRI images. Additionally, RF-induced heating in the vicinity of the electrophysiological recording components. New probes based on Graphene Solution-Gated Field-Effect Transistors (gFET) allow high-fidelity DC-coupled invasive brain signal recordings in rodents [Bonaccini Calia et al, 2022], but their suitability for the MR environment remains to be evaluated. Computational electromagnetic (EM) simulations are useful to evaluate the interactions between implants and the MRI fields. However, due to the microscopic (sub-micrometric) substructures of the gFET probes, the simulation times using standard techniques can be excessively lengthy (>1000 hours). Here we explore the use of a Huygens' Box (HB)-based approach to reduce computation times and improving spatial resolution compared to conventional methods [Neufeld et al, 2009].

EM simulations were performed using the finite-difference time-domain (FDTD) method on a Windows 11 PC (3.00GHz, 32GB RAM, Nvidia RTX 4090 GPU) using the aXware kernel on Sim4Life (V8.0, ZMT, Switzerland; http://www.zurichmedtech.com) in a 3-dimensional (3D) rodent model consisting of 68 tissues [Kainz et al, 2006]. • Simulation setup: 300 MHz of Gaussian excitation with a bandwidth of 625 MHz was used as the excitation source in both methods: (1) Multi-port (MP) method: Same excitation source in a two-port configuration, followed by impedance matching and combining the results in circular-polarized mode. (2) Huygens’ box (HB) method: Two-step process: The first simulation is performed with the RF coil excited in circular-polarized mode, generating fields in a rectangular region of interest: the HB. The second simulation uses the HB as a source with the 3D rodent model placed inside the HB; for comparison purposes simulations were performed with and without a probe; see Figure 1. • RF coil modelling: A quadrature birdcage RF coil is used, with each rung (width: 9.9 mm) containing a capacitor (13.8 pF) placed on the end rings (width: 11.5 mm) to resonate at 300 MHz; see Figure 1. • Probe modelling: The 3D probe models were generated from 2D drawings and exported to individual layers via Rhino (V8, Washington, DC, USA) and finally converted to multi-layered 3D model in Sim4Life; see Figure 2. • Estimated EM fields: Transmit RF field (B1+), mass-averaged, and peak spatial-averaged specific absorption rate (SAR) averaged over 0.01 g, 0.1 g, and 1 g tissue mass were calculated following IEC guidelines [IEC].

Table 1 shows the computational times for different simulation types and their respective grid sizes. Note the higher resolution and shorter simulation times for the HB method. The B1+-field distributions in the rodent model for MP and HB simulations were similar, with improved resolution for the latter; B1+ magnitudes in the vicinity of the probes were elevated by approximately 15–20%. Figure 3 shows the SAR distributions in the rodent model for the MP and HB simulations, revealing elevated SAR near the probe.

The HB approach enhances electromagnetic simulations by improving computational efficiency and enabling higher-resolution field calculations around probes and the rodent model. However, a limitation is the inability to apply RF coil matching in HB simulations as effectively as in multi-port simulations, introducing slight uncertainties. SAR elevation in the vicinity of the graphene-based probes is modest.

This study successfully demonstrates the estimation of EM interactions of graphene-based EEG probes within an MRI environment using the HB approach to accelerate simulations of these microscopic probes. Our simulations show that that the impact of the graphene-based probes on RF transmission and SAR deposition is modest. Further work is needed to optimize computational efficiency, conduct experimental verification using phantoms and evaluate the probe’s electrophysiological performance in the MRI environment.
Suchit KUMAR, Samuel FLAHERTY, Alejnadro LABASTIDA-RAMÍREZ, Anton GUIMERÀ BRUNET, Ben DICKIE, Kostas KOSTARELOS, Rob WYKES, Louis LEMIEUX (London, United Kingdom)
15:40 - 17:10 #47709 - PG419 Comparison of quality control pipeline for skeletal muscle energy metabolism assessed by 31P MRS in patients with muscle weakness at 3T and 7T.
PG419 Comparison of quality control pipeline for skeletal muscle energy metabolism assessed by 31P MRS in patients with muscle weakness at 3T and 7T.

Dynamic phosphorus magnetic resonance spectroscopy (31P MRS) is a noninvasive method for assessment of phosphorus metabolite levels, which reflect mitochondrial respiratory capacity (1,2). However, dynamic data analysis is often hindered by variability in data quality, influenced by patient characteristics and experimental setup. A recently proposed quality control (QC) pipeline developed by Naegel et al. (3, QCS_REF) introduced six key parameters to ensure reliable 31P MRS results in large clinical datasets, such as phosphocreatine (PCr) depletion, the coefficient of determination (R²) for recovery (Rec) and exercise (Ex) kinetic fits of PCr and inorganic phosphate (Pi), the stability of the sum of PCr and Pi during the measurements, exercise time constants (τ) of PCr and Pi, and coefficient of variation (CV) of PCr and Pi at the end of Ex and Rec period. This study tested the applicability and the transferability of this QCS_REF (3,4) to two different research sites equipped with different MR systems (3T and 7T), and different ergometers in patient groups with the focus on frail, elderly and patients with neurodegenerative disease.

The study included six groups in each research center (Table 1): healthy young controls (HCY), elderly healthy controls (HCE) and obese volunteers (OV) at both centers, liver transplant (LT) candidates (LTC), patients 6 months after LT (LT6) and patients with diabetic foot syndrome (DFS) at the site one (S1), and patients with Parkinson’s disease (PD), Alzheimer’s disease (AD) and mild cognitive impairment (MCI) at the site 2 (S2). All subjects provided written informed consent with the participation in the study. The study was conducted in compliance with the principles of the Declaration of Helsinki and with the approval of local ethics committees. Subjects at both centers were examined on Siemens MR systems (3T @ S1 and 7T @ S2) in a supine position. MR compatible ergometers were used. At 3T, dynamic 31P MRS were obtained by the FID sequence (TR/TE* = 2000/0.4 ms, 420 measurements) and flexible dual 1H/31P surface coil (Rapid Biomedical) fixed under the musculus gastrocnemius. The exercise protocol consisted of a 1-minute rest, a 4-minutes plantar flexion exercise (f = 0.5 Hz) and a 9-minutes of recovery. At 7T, DRESS sequence (TR/TE* = 2000/0.4 ms, 420 measurements) with VOI placed over the gastrocnemius medialis muscle was applied. Dual 31P/1H circular surface coil (Rapid Biomedical) or double-tuned surface coil transceiver array with two 1H channels and three 31P channels was used. The examination protocol included a 2-minutes rest, a 6-minutes plantar flexion exercise (f = 0.5 Hz), and a 6-minutes of recovery. Resistance of the pedal was set to 25-35 % of the individual maximal voluntary force (MVF) at both sites. 31P MR spectra were analyzed using the AMARES fitting routine in the jMRUI v5.0 and time course of 31P metabolites were evaluated at both centers by the same MATLAB script to produce consistent and comparable results of exponential fitting. Metabolic parameters such as mitochondrial capacity (Qmax) and recovery time constants (τREC) of PCr and Pi were calculated.

The application of reference quality control limits (QCS_REF) lead to exclusion of substantial part of data for our patient groups and experimental setting. Specifically, only 24 % of all Rec+Ex data and 44 % of Rec period data at 3T (Fig.1) and 32 % of all Rec+Ex and 67 % of Rec data at 7T passed QCS_REF inclusion criteria. Low SNR of Pi signal, reflecting partial T1-saturation at TR of 2s leading unreliable fitting results of Pi dynamics (R2 τPi), was the main reason for the data exclusion. Thus, two new QCS1 and QCS2 were suggested to better reflect our protocol set ups and patient groups. The original criterion of R2 τPi < 0.7 was omitted in QCS1. The sum (R2 τPCr + R2 τPi) < 1.4 was used in QCS2. Using adapted QC, neither τREC nor τEx nor Qmax differed in each patient group (Tab.2).

Key parameters recommended in referenced publication (3) proved to be effective for assessing 31P MRS data quality. However, suggested limits need to be modified according to patient groups and TR settings, as shorter TRs used in our experimental protocols reduced Pi SNR, the robustness of its dynamic time course and impacted QC outcomes. Adapted QCS1 and QCS2 thresholds proved to be more adequate in classifying the 31P MRS dynamic data at both 3T and 7T.

This project of two research centers successfully evaluated and adapted a joint methodology for the assessment of the quality of dynamic 31P MRS data. It highlights the importance of adjusting QC parameters according to patient characteristics and experimental conditions to ensure reliable and comparable 31P MRS data in different clinical applications.
Dita PAJUELO (Prague, Czech Republic), Radka KLEPOCHOVÁ, Petr ŠEDIVÝ, Monika DEZORTOVÁ, Ivica JUST, Petr KORDAČ, Milan HÁJEK, Martin BURIAN, Pavol SZOMOLÁNYI, Pavel TAIMR, Luděk HORVÁTH, Michal DUBSKÝ, Dominika SOJÁKOVÁ, Martin KRŠŠÁK
15:40 - 17:10 #47695 - PG420 Quantitative susceptibility mapping of the knee cartilage at 7 tesla with aspire multi-echo gradient echo and water-fat total field inversion.
PG420 Quantitative susceptibility mapping of the knee cartilage at 7 tesla with aspire multi-echo gradient echo and water-fat total field inversion.

Knee osteoarthritis is a degenerative disease of the total knee joint in which often the cartilage is affected. Several MRI techniques are available for diagnosing and quantifying the level of osteoarthritis in the knee. Commonly used methods for evaluating the knee cartilage tissue include T2(*) mapping, diffusion-weighted MRI, T1ρ, glycosaminoglycan chemical exchange saturation transfer (gagCEST) and sodium imaging [1]. Collagen composition in knee cartilage is an important feature for the evaluation of osteoarthritis progression or interventions for cartilage repair. Previous studies have shown that quantitative susceptibility mapping (QSM) is capable of detecting the collagen structural organization in cartilage and canals in juvenile cartilage [2-7]. Although QSM benefits from higher magnetic field strengths, most in-vivo QSM cartilage studies are done at 3 Tesla (3T), and to our knowledge only one study investigated cartilage structure at 7T [2]. In this study, we aim to evaluate QSM of the knee cartilage at 7T, using the ASPIRE multi-echo gradient echo (ME-GRE) sequence [8] and a water-fat total field inversion (wfTFI) QSM processing pipeline [9].

Data sets of five volunteers (aged 26 to 44 years, three males, three left and two right knees), with no known knee damage were acquired on a Siemens 7T Magnetom Plus MR scanner with 1Tx/28Rx channel QED knee coil. After manual B0 shim and B1 power optimization, three series of monopolar 3D ME-GRE with ASPIRE reconstruction were acquired. The three series were acquired twice, once with isotropic voxels and once with higher in-plane resolution. Scan parameters are shown in Table 1. The three acquired phase and magnitude series were combined to one series. A binary mask was created based on the maximum intensity projection across the different echoes of the magnitude data using a threshold of 10% of its maximum intensity [9]. Complex data of the combined series and a fat model of seven fat peaks [10] were used as input in the hierarchical multi-resolution graph-cuts (hmrGC) method [11] to compute water and fat images and a R2* and B0 field map. These processed data were used as input for the wfTFI method of Boehm et al. [9]. A susceptibility map (χ-map) was estimated from the B0 fieldmap first by solving a linear preconditioned TFI problem [12] and second by estimating the χ-map directly from the complex multi-echo data using a water-fat signal model and the initial estimate from the linear TFI. Additional χ-maps were estimated by Projection onto Dipole Fields (PDF) [13] or Laplacian Boundary Value (LBV) [14] background field removal and Streaking Artefact Reduction (STAR-QSM) [15] field inversion as done in previous knee studies [2, 5-7].

The preliminary results are summarized in Figure 1 presenting the χ-maps of one slice of the isotropic acquired data and Figure 2 presenting the χ-maps of one slice of the high in-plane data acquired. Measuring QSM in knee cartilage, using the ASPIRE sequence and performing (wf)TFI show similar results as the PDF + STAR-QSM method. LBV + STAR-QSM show less contrast compared to the other processing methods. Linear TFI and wfTFI look similar.

Measuring QSM at 7T in the knee is not trivial, due to increased phase errors caused by the short T2* decay of bone and ligaments, the presence of fat, the pulsation of the Popliteal Artery and due to the small tissue structures of interest. To avoid phase errors caused by different coil sensitivities, an ASPIRE ME-GRE sequence was used [8]. To avoid phase errors caused by the Popliteal Artery, the data was acquired in coronal orientation with phase encoding in right-left and a readout in feet-head direction. The linear TFI seems to show similar quality as the wfTFI method for the current imaging protocol. One might consider not to perform the wfTFI to save processing time, which will be beneficial for clinical use. The knee cartilage is thin, ~2 mm, which makes it challenging for QSM processing. The LBV background field removal removes pixels at the edges of the tissue, probably causing signal loss of the cartilage. Therefore, TFI or PDF are preferred. The results shown are preliminary results of one volunteer. To assess test-retest reproducibility each volunteer was scanned twice (data still undergoing analysis). The lack of an accepted gold standard for susceptibility values makes it difficult to quantify and validate, since different parameters like resolution, echo timing and QSM processing steps yield different χ-maps. In this study we obtained similar results at 7T as reported by Wei at al. [2], using the ASPIRE sequence and (wf)TFI.

The evaluated QSM method has potential for knee cartilage assessment with 7T MRI, but it needs further optimization. Validation is needed for clinical practice, as are shorter scan times and faster processing. The added value over the existing methods for knee assessment needs to be investigated in a clinical study.
Esther STEIJVERS-PEETERS (Maastricht, The Netherlands), Laslo VAN ANROOIJ, Marloes PETERS, Dimitrios KARAMPINOS, Jonathan STELTER, Pieter EMANS, Benedikt A POSER
15:40 - 17:10 #47649 - PG421 Detecting CEST Peaks using Curvature Analysis in High Resolution CEST Spectra.
PG421 Detecting CEST Peaks using Curvature Analysis in High Resolution CEST Spectra.

CEST MRI is based on the chemical exchange of labile protons with water protons. One simple approach to assess information of the exchanging protons is by calculating the so-called MTRasym [1]. This can lead to an unwanted superposition with further MT-effects originating in the Z-Spectrum. More precise techniques include Lorentzian and/or polynomial pool-fitting methods [2], which can be limited by low amplitude signal quantification. In this paper, we propose a new method by using curvature analysis, and we evaluate its properties regarding robustness and CEST signal contrast.

The proposed curvature analysis uses a 2-fold numerical derivation of the Z-spectrum in order to detect the offset-specific curvatures of the saturated CEST pools. This method was investigated in both, Pulseq-CEST simulations [10] and CEST measurements on three human calf muscles within the gastrocnemius. Data was acquired on a 7T Siemens Terra X scanner (Siemens, Healthineers) by using a 24 channel knee coil. For CEST imaging, saturation was achieved by using block-pulses with a 2s saturation time, DC=99 % at three different B1 levels (0.4, 0.6, 0.9 μT). A 3D snapshot readout [11] was used to acquire the offset range from -10 to 10 ppm. B0 and B1 correction were determined by using the field maps from WASABI [9] and applied to the CEST data for post-processing. Within the Pulseq-CEST simulation, an analysis was conducted on the curvature behavior in response to alterations in both, the concentration of the PCr CEST pool and its exchange rate. The simulated phantom comprised four pools: water, MT, Cr and PCr pool. The simulation parameters for water, MT and Cr were obtained from literature [3-8]. For comparability, all Z-spectra were fitted with a 5-pool lorentzian model. After the derivation, the water peak in the curvature was removed by subtracting the analytical curvature with the fitted parameters of the water pool from the total numerical curvature. As a comparability metric, the relative contrast ratio (RCR) has been calculated according to Eq.1: RCR_pool=((cur_pool)⁄(cur_H20 ))/((amp_pool)⁄(amp_H20 )) [Eq.1] Here cur is the curvature and amp is the amplitude of each peak. In addition to Eq.1, we investigated the theoretical amplification of the noise in the curvature.

An example spectrum of the simulation without noise can be seen in Fig.1 with the Z-spectrum (blue) and the corresponding curvature (orange). The curvature spectrum reveals an average RCR_PCr of 9 ± 6 and thus has a higher contrast to water compared to the Z-spectrum. The same spectrum with the addition of noise, smoothing and a five pool fit was simulated in Fig.2. While the curvature gets noisier, the Cr and PCr peaks are also heavily amplified. We calculated the theoretical increase of noise in the curvature to be σ_curv=√6/(ω_s^2 ) σ where σ is the noise in spectrum and ω_s is the sampling rate of the spectrum. Since ω_s is also used during the numerical derivation, this factor cancels out in a SNR and leads to a √6 worse SNR for the curvature, but the error stays proportional to the Z-spectrum error. Fig.3 shows the measurement within a ROI of the gastrocnemius muscle with the corresponding average Z-Spectrum and curvature for one of the volunteers. The data indicates an RCR_PCr of 8.5 ± 3.9. The curvature contrast demonstrates a relative increase in the water peak of 17%, in comparison to a Lorentzian amplitude contrast of 2%. In addition, Cr (1.9 ppm) and PCr (2.6 ppm) show an amplification compared to the corresponding signals in the Z-spectrum. The removal of the water-peak in the curvature is plotted in red. In Fig.4, we show the direct comparison of the curvature and Lorentzian maps.

The curvature analysis of the Z-spectrum achieves better CEST-water-peak contrast than Lorentzian fitting. While this method amplifies noise by √6, it can detect an RCR_PCr of 8.5 ± 3.9, very close to the simulated result of 9 ± 6. Smoothing the data partially reduces noise. Curvature analysis enables better CEST peak separation and removes broad peaks like the MT pool, y-axis drift, and other linear influences. It also allows removal of water’s influence, centering the spectrum around zero. The resulting curvature maps show very homogeneous contrast. Signal increases in the Lorentzian PCr map are also seen in the curvature map. The Cr signal reduction seen in the Lorentzian map is absent in the Cr curvature map, possibly due to a fitting issue, which will be investigated.

The relative contrast between the water pool and the PCr pool increase of a factor of 8.5 while only worsening the noise by a factor of √6, together with the very homogeneous maps, makes this method interesting for further analysis. While there are still problems to be solved, like the noise amplification, we believe that this might be a new promising approach for CEST data analysis.
Simon KÖPPEL (Erlangen, Germany), Jan-Rüdiger SCHÜRE, Moritz ZAISS
15:40 - 17:10 #47833 - PG422 Cortical thickness of the human brain with MP2RAGE at 9.4T: methodological challenges and histology.
PG422 Cortical thickness of the human brain with MP2RAGE at 9.4T: methodological challenges and histology.

Cortical thickness is a key biomarker for studying brain alterations, often used to infer neuronal loss or degradation through cortical thinning [1]. However, the lack of a gold standard for in vivo cortical thickness measurements is a challenge for establishing reliable reference values [2]. Methodological innovations, like the availability of ultra-high-field scanners (UHF) or novel processing pipelines further highlight the importance of thorough investigations and comparative studies. Here, we validate the robustness of cortical thickness in UHF-MRI at 9.4T with surface-based and volume-based pipelines and evaluate the correspondence with 3T results and histologically retrieved cortical thickness measures [4, 5].

A total of 39 participants (19 – 74 years, M = 37.5, SD = 17.65), underwent anatomical imaging at a 9.4T whole body MR scanner with MP2RAGE, TI1/TI2 = 900/3500ms; flipangles, FA = 4/6; repetition time TR = 6ms; echo time TE = 2.3ms; volume TR = 9s; and 0.8mm isotropic voxel size. A subset of subjects (N=11; 20–56 years, M = 36, SD = 11.3) also had MP2RAGE scans at 3T with comparable settings [11]. Grey-White Matter Segmentation was performed using FreeSurfer (v.6.0 and v.7.4.0), and the resulting rim of the cortex was used to calculate cortical thickness within FreeSurfer and LAYNII [3] with the LN2LAYERS algorithm. The JueBrain atlas [6] was used for parcellation, available in both volume and in surface space. The cortical thickness obtained in surface-space at 9.4T was compared with histology data using the von Economo parcellation [10].

A vertex-wise paired t-test revealed two significant clusters of cortical thickness differences between 3T and 9.4T, corrected using Monte Carlo Simulation and a cluster threshold of p < 0.001. In the right inferior temporal region, the cortical thickness was higher at 3T (t = 5.48, p = 0.0002), while in the superior frontal cortex, it was lower at 3T (t = −4.06, p = 0.0004). Outside these regions, no significant differences were observed. Comparing volume- and surface-based methods (paired Student’s t-tests), revealed significant differences in mean cortical thickness for the left (t(126) = −51.95, p < 0.0001, Δ = −1.36 mm) and right hemisphere (t(127) = −40.09, p < 0.0001, Δ = −1.34 mm), with a large effect size (d = −4.98; Fig. 1). Finally, a Wilcoxon rank-sum test showed significant differences between MRI-based and histological measurements from v. Economo (W = 327, p < 0.0001) and the BigBrain datasets (W = 209, p < 0.0001) (Fig. 2,3). Correlation analyses confirmed a ~16.1% thinner cortical thickness with MRI.

The estimated cortical thickness was generally unaffected by 9.4T UHF, supporting its robustness throughout increasing field strengths, in agreement with [2]. However, there was a significant difference between surface- and volume-based methods, with LAYNII yielding higher thickness values (by 1.34 mm). Since both tools derive cortical thickness from the same cortical rim after GM-WM segmentation, the difference likely results due to methodological differences: FreeSurfer calculates cortical thickness based on the shortest distance between vertex nodes among all neighbouring nodes of the GM and WM surface [7]. LAYNII uses a volume-based approach calculating the thickness as the shortest streamline distance between the outer and inner gray matter borders, which is not necessarily the shortest Euclidean distance [3]. Contrary to prior studies [7–10], MRI-derived cortical thickness significantly differed from histological measurements (von Economo, BigBrain), indicating a systematic effect in in-vivo MRI using MP2RAGE, which cannot be explained by field-strength differences. Figures 3 and 4 support the existence of a systematic effect, as the mean thickness obtained at 9.4T follows a similar region-specific pattern as those determined with histology, with slightly greater discrepancies in regions where the cortex is thinner. Further investigation is needed to identify if systematic differences are due segmentation tools or imaging sequence.

Our findings confirm that cortical thickness is a robust measure across field strengths, with only minor differences between 3T and 9.4T, extending prior evidence to ultra-high-field MRI [2]. However, systematically higher cortical thickness found in volume-based in comparison to surface-based methods. These differences highlight the importance of methodological considerations when interpreting cortical thickness measurements across studies. Moreover, comparisons with histological datasets indicated significantly lower cortical thickness values in MRI-derived measurements, contrasting previous studies that reported alignment between in-vivo MRI and histological data [7, 5]. This systematic difference suggests that cortical thickness measurements derived from in-vivo MRI with MP2RAGE is not in line with histological thickness and should be interpreted with caution across literature and calculation pipelines.
Angela OSENBERG (Tübingen, Germany), Jonas BAUSE, Pascal MARTIN, Klaus SCHEFFLER, Gisela E. HAGBERG
15:40 - 17:10 #46651 - PG423 Optimisation strategy for determining refocusing flip angle trains in the multi-echo spin-echo sequence for T2 mapping at 7T.
PG423 Optimisation strategy for determining refocusing flip angle trains in the multi-echo spin-echo sequence for T2 mapping at 7T.

Quantitative MRI is valuable to compare images between scanners and characterise disease progression. In particular, T2 mapping has been proven useful in the detection of myocardial disease [1], pathological tissues in epileptic patients [2], multiple sclerosis [3] and Alzheimer’s disease [4]. T2 measurements are commonly conducted using a multi-echo spin-echo (MESE) sequence typically with an echo train of 180° refocusing flip angles (FA) and a mono-exponential fit of the decaying signal. However, the application of this technique at 7T is limited due to increased B1+ inhomogeneities and specific absorption rate (SAR) levels [5]. To mitigate B1 effects, extended phase graph (EPG)-based fits can be used to model the signal decay [6], [7]. To reduce SAR, trains with low constant refocusing FAs have been used [8]. However, it is not clear which FA train will give the best compromise between T2 precision, image quality and SAR. The purpose of the present work is to develop a framework to optimise the FA train of the MESE sequence at 7T based on EPG simulations, considering SAR constraints and maximizing the contrast between two tissues. The quality and repeatability of images from the optimised echo train (FAopt) were compared to the images from the 180° echo train.

Framework for FA train optimisation: We simulated two tissues with a T1 value of 1500 ms and different T2 values corresponding to grey and white matter (60 and 40 ms respectively) [9]. The optimiser was designed to find the combination of FAs (between 0 and 180°), which maximises the area between the two simulated signal decay curves and minimises SAR in the least-squares sense (Figure 1 - Equation 1). The SAR term was defined as the sum of FA squared modulated by a regularisation parameter λ. Acquisitions: Four healthy volunteers (3 males, [28-41] y/o) were scanned twice in the same session at 7T (MAGNETOM Terra.X, Siemens Healthineers, Forchheim, Germany) with an 8Tx/32Rx head coil (Nova Medical, Wilmington, USA), taking them out of the scanner between the two runs. The acquisition parameters of the 2D coronal MESE images were: TR=5170ms, echo spacing=9.1ms, 0.8x0.8x2.0mm, 14 slices (50% gap), TA=10:27min. The FAs of the FAopt train are given in Figure 1E. Before each MESE sequence, a 2D B1+ map was acquired using a pre-saturated TurboFLASH (TR=5990ms, TE=1.63ms, FA=5°, 4.0x4.0x5.0mm, TA=13s) [10]. We also acquired a 3D MP2RAGE (T1W) image (TR=6000ms, TE=2.97ms, TI=[802, 2700]ms, FA=[4,5]°,0.6x0.6x0.7mm, TA=7:34min) [11]. Data processing: B1+ maps were reconstructed [10] and registered to the MESE images using FSL FLIRT [12]. Segmented regions from the T1W images using FreeSurfer [13] were registered to the MESE images using ANTs [14]. A dictionary of EPG-based signal decay curves was generated by varying B1+ (0.2 to 1.3) and T2 (2 to 300 ms) and keeping T1 constant (1500 ms). To compute T2 maps, the B1+ maps were employed to select dictionary curves matching the FA in each voxel. By maximising the cross-product between signals and the dictionary curves, the voxel-wise T2 values were determined. Statistical analysis: The fitting error was computed by computing the root mean squared error (RMSE) between data points and fit in each voxel. To compare MESE sequences and runs, the median T2 values were computed in different regions (white matter, deep grey matter, cortex and cerebellum), and linear regressions, Bland-Altman plots and coefficients of variation were used for analysis.

The optimisation procedure converges towards a sequence of FAs which minimises the cost function for different values of λ (Fig. 1). Setting λ=0.078 ensures SAR reduction, while mitigating the loss of area between the two curves (T2=60ms and T2=40ms) and gaining slightly in mean signal intensity. T2 and RMSE maps from the two MESE sequences can be visualised in Fig. 2. SAR is reduced by more than 60% in the FAopt sequence. The visual quality of the T2 maps from the FAopt sequence is not compromised by the reduced FAs and the RMSE is lower overall. Both types of T2 map have good repeatability, as shown in Fig. 3. However, the MESE sequence with the 180° train has consistently higher T2 values than the MESE with FAopt train (mean difference: 8.90 [6.82,10.98] ms; Fig. 4).

T2 maps from the MESE sequence with FAopt train were repeatable and of good quality. However, T2 values were consistently lower than the ones from the MESE with 180° train; the latter also being characterised by a higher RMSE. We noted that the optimised FAs were similar to a train of pseudo-constant FA of 93°, which is lower than previously tested [8].

A flexible EPG-based framework was developed and was used to optimise the FA train of the MESE sequence by maximizing the contrast between two tissues and reducing SAR at 7T.
Emilie SLEIGHT (Lausanne, Switzerland), Ludovica ROMANIN, Gian Franco PIREDDA, Frédéric GROUILLER, Tom HILBERT, Dimitris KARAMPINOS
15:40 - 17:10 #47645 - PG424 T1 mapping with multi-contrast MP-RAGE and 2D GRAPPA at 7T.
PG424 T1 mapping with multi-contrast MP-RAGE and 2D GRAPPA at 7T.

MP2RAGE[1-3] is well-suited to high-contrast T1-weighted (T1-w) imaging of the human brain at 7T due to reduced sensitivity to B1+ inhomogeneity and T2* effects. This is achieved by combining two complex images acquired at different inversion times (TI). This study expands the quantitative capabilities of MP2RAGE by acquiring additional images at more TIs by extending previous work[4] and employing 2D GRAPPA[5], data sampling in both phase-encoding directions is accelerated, reducing overall scan time and sampling time for each image during spin relaxation after the inversion pulse. Unlike previous research[6], which used a radial readout, this study utilises a multi-contrast MPRAGE (McMPRAGE) with a Cartesian readout, a straightforward modification of the standard sequence. The Deichmann-Haase correction[7] using SNAPSHOT-FLASH for T1 estimation was extended here to McMPRAGE data. However, it does not account for the incomplete relaxation during the delay time (TD) before each inversion pulse, which is relatively short in typical MPRAGE protocols. To address this, an updated model function, based on more recent work[6], was also explored in a preliminary Monte Carlo simulation.

Scans were performed on a 7T MAGNETOM Terra MRI scanner (Siemens Healthineers AG, Germany) using a custom-built 8Tx64Rx head coil[8] with local ethical approval. Images were acquired from an agar gel phantom and in vivo with 0.86mm isotropic resolution, TR 4800ms, and GRAPPA acceleration factor 3x2. McMPRAGE was used to scan 4 healthy volunteers (4F, 20-40) with TDs of 2000ms and 8000ms, giving a total acquisition time of 7.9mins and 10.4mins respectively. MP2RAGE images with matched resolution were also acquired (TIs:700ms, 2700ms, TR:5000ms, GRAPPA factor 2) in 8.2mins. Brain, grey matter(GM), and white matter (WM) masks were obtained with FAST[9] in FSL using McMPRAGE's second contrast. T1 estimation of phantom and in vivo data was performed voxel-wise as a monoexponential, 3-parameter fit using the Deichmann-Haase correction(Figure 1). A 10,000-sample Monte Carlo simulation was performed using MATLAB (R2024b, MathWorks, Natick, MA, USA). In each run, synthetic signal was generated and Gaussian noise was added. The goal was to compare precision and accuracy of T1 estimates from the Deichmann-Haase correction with those derived from an alternative model function that accounts for the incomplete longitudinal relaxation during the TD. The alternative model was tested under 3 fitting conditions: a 2-parameter fit and two 3-parameter fits.

Figure 2 illustrates different T1-w contrasts from a single acquisition with TIs (500ms-3000ms) and corresponding T1 maps. Estimated T1 values for TD=2000ms and 8000ms for WM (980±192ms and 1085±232ms) and GM (1562±450ms and 1797±326ms) were comparable for WM but underestimated for GM relative to previously published values (WM 1130±10ms; GM 1940±150ms)[10]. Figure 3 demonstrates that McMPRAGE yields a contrast comparable to the MP2RAGE uniform (UNI) image by using estimated T1 values to generate synthetic images for the TIs used in MP2RAGE. Figure 4 shows that, in Monte Carlo simulation, Deichmann-Haase correction underestimated T1 while the updated model function yielded a more accurate but less precise estimate with 3-parameter fits, but an accurate and precise estimate using 2-parameter fit.

This study demonstrates that extending MP2RAGE to include multiple TIs combined with 2D GRAPPA enables the acquisition of more sample points for T1 fitting without significantly increasing the scan time. Moreover, McMPRAGE can also achieve a contrast similar to MP2RAGE, which is well established in neuroscience studies and clinical practice. Deichmann-Haase correction used to fit T1 imperfectly accounts for incomplete relaxation during TD. This limitation leads to an underestimation of T1, particularly in tissues with longer relaxation times like GM. While this bias is evident at shorter TDs, at longer TDs, results are comparable with published values and consistent across subjects, as seen in Figure 1. Monte Carlo simulations further confirm this bias. To address this, parameter fitting using an updated model function was also evaluated for T1 estimation. This function lacked precision for 3-parameter fitting, but when used with a 2-parameter fit, it achieved both accurate and precise T1 estimates. The superior performance of 2-parameter fitting with the updated model function could be realised in practice by using flip angle values derived from B1+ maps along with inversion efficiency values obtained from Bloch simulations or experimental characterisation as inputs, thereby allowing T1 and ⍴ to be estimated more robustly.

This study demonstrates the feasibility of extending MP2RAGE to multiple contrasts with accelerated Cartesian k-space sampling to achieve robust quantitative mapping. Future work will assess the performance of the updated model function when estimating T1 values from McMPRAGE data acquired in vivo.
Janhavi GHOSALKAR (Glasgow, United Kingdom), Graeme A. KEITH, Belinda DING, Natasha FULLERTON, Shajan GUNAMONY, David PORTER
15:40 - 17:10 #47717 - PG425 Optimizing parallel transmission for 7T MRI of the spinal cord with faster acquisitions and higher spatial resolution.
PG425 Optimizing parallel transmission for 7T MRI of the spinal cord with faster acquisitions and higher spatial resolution.

Spinal cord (SC) MRI is challenging due to the small size of the cord. To visualize microstructures [1] and abnormalities [2] in the SC that are undetectable at 3T, both high spatial resolution and SNR are essential, which can be achieved at 7T [3], [4]. However, increasing in-plane resolution can lead to longer acquisition times (TA), or may not be possible due to hardware restrictions. Furthermore, current limitations of 7T MRI include B1⁺ field inhomogeneity and specific absorption rate (SAR) constraints [3], [4]. Those issues can be mitigated using parallel transmit (pTx) [6], recently implemented in the SC [7], [8]. In this work, we use pTx to solve B1+ and SAR issues as well as to improve the trade-off between acquisition time and high spatial resolution in a 3D-GRE sequence, in the context of 7T SC MRI. The proposed method combines signal homogenization within a region of interest (ROI) with signal suppression outside the ROI, which allows a reduced field-of-view (rFOV) without aliasing artifacts [6]. The rFOV technique was implemented in a phantom and was evaluated for reduced scan time or increased spatial resolution.

All experiments were conducted on a 7T Magnetom TERRA (Siemens Healthcare) using an 8 Tx/Rx cervical coil (Rapid Biomedical) loaded with a head and neck phantom (SPEAG, Zurich, Switzerland). The gradient ascent pulse engineering (GRAPE) algorithm [9] was used to optimize pTx pulses [7] in the rFOV mode. B1⁺ maps (TurboFLASH satTFL) [7], [10] and B0 maps (3-echo GRE) were used as inputs for the optimization. The optimization was performed using a magnitude least-squares approach with: 500 µs pulse duration, 1000 iterations, 10° target flip angle, 10 µs time step and a slew rate constraint of 195 T/m/s. The optimized RF pulse was used in a 3D-GRE sequence with an initial spatial resolution of 0.78×0.78×2.5 mm³ and a FOV of 184×200×240 mm³, which were chosen to limit TA to ~10 min. Sequence parameters are provided in Table 1. The rFOV approach was used to increase resolution or reduce TA by decreasing FOV to 80×80×200 mm³. The signal-to-noise ratio normalized to acquisition time (SNRN) was used to compare the two rFOV configurations. In addition, flip angle normalized root mean square error (FA NRMSE) was evaluated to assess the accuracy of the excitation profile.

RF pulse optimization using the GRAPE method enabled effective selective excitation in rFOV mode. The signal was largely suppressed outside the (ROI), and maintained homogeneous within the ROI, as shown by the simulated magnetization maps (Fig. 1A). A quantitative analysis showed a normalized root mean squared error (NRMSE) of 21% for the flip angle (FA) within the ROI. Outside the ROI, the FA cancellation NRMSE was ~8%, demonstrating effective signal suppression. All optimized pulses complied with the imposed physical constraints, particularly regarding the specific absorption rate (SAR) (Fig. 1B), and were calculated in less than 15 minutes. In Fig.2A (circularly polarized (CP) mode), the baseline acquisition yielded a SNR of 49.57 and a SNRN of 2.02. When improving spatial resolution using rFOV (Fig. 2C), the SNR dropped to 23.84 (−52%) and SNRN to 1.00 (−51%) compared to the CP mode. However, this high in-plane resolution (0.2 × 0.2 mm²) was achieved within a similar TA (~9.5 min), which would not be feasible with a full-FOV excitation. When applying the rFOV strategy to reduce acquisition time to less than 4 min (Fig. 2D), the SNR decreased to 30.62 (−38%), but SNRN remained comparable (2.04 vs. 2.02).Overall, rFOV enabled either substantial TA reduction or resolution increase with controlled SNR loss, while maintaining clinically acceptable scan durations.

In this study, we successfully implemented a rFOV excitation using pTx with a SC radiofrequency coil on phantom at 7T. This approach allowed either a 2.7-fold reduction in TA, or an increase in in-plane resolution up to 0.2 × 0.2 mm² within a clinically acceptable TA (~9 min), without introducing aliasing artifacts. With full-FOV excitation 3D-GRE and the sequence parameters used in this study, the maximum spatial resolution was only 0.66 × 0.66 mm2 due to scanner limitations. The rFOV pTx method thus enables efficient use of the available SNR and improves imaging flexibility depending on clinical priorities (resolution vs. speed). However, a decrease in SNR and SNRN was observed at high-resolution. A precise evaluation of SNR requirements will be necessary for in vivo application to ensure sufficient image quality. Residual signal outside the ROI was also observed, likely due to B1⁺/B0 map inaccuracies. Combining rFOV excitation with coil sensitivity encoding could improve robustness to imperfect cancellation [9]. Future work will focus on assessing in vivo SNR requirements to guide the trade-off between spatial resolution and acquisition time, as well as evaluating rFOV applications in healthy subjects.
Charles BETEMPS (Marseille), Vincent GRAS, Joseph BREGEAT, Virginie CALLOT, Aurélien DESTRUEL
15:40 - 17:10 #46665 - PG426 Dual-venc phase contrast mri using fast interleaved radial mixing (pc-firm).
PG426 Dual-venc phase contrast mri using fast interleaved radial mixing (pc-firm).

Phase contrast (PC)-MRI has been widely used to detect and characterize blood flow abnormalities either for neuro- or cardiovascular diseases. However, conventional PC-MRI is restricted to the specific flow sensitivity range of the selected velocity encoding (VENC). Consequently, regions with high velocity differences, e.g. neurovascular vessels or aortic branches, poses inaccuracies in the estimated flow velocity. To overcome this limitation, dual-VENC approaches acquiring two sets of flow maps with low and high VENC have been introduced [1,2]. The prolonged acquisition time of the dual-VENC can be reduced using parallel imaging [3]. However, most approaches use conventional Cartesian encoding for image acquisition. In this work, we present a novel approach to accelerate dual-VENC PC-MRI using radial spatial encoding and k-space weighted image contrast (KWIC) [4]. The introduced phase contrast fast interleaved radial mixing (PC-FIRM) approach is based on an intelligent combination of radial projections with different flow sensitivities to create dual-VENC flow velocity maps.

The prototype PC-FIRM sequence is based on a spoiled radial FLASH sequence with flow sensitive bipolar gradients. Schematic illustration of the proposed sequence design and k-space mixing scheme is shown in Figure 1. Based on the KWIC idea, the PC-FIRM sequence acquires radially encoded k-space lines with interleaved polarity (positive, negative) and strength (low VENC, high VENC) of flow sensitive gradients. In theory, the k-space data of each velocity encoding can be reconstructed separately to create conventional PC-MRI. In PC-FIRM, artificial k-spaces containing low frequency spatial information only from the desired VENC and high frequency spatial information from all acquired data are combined and reconstructed using a conventional gridding algorithm. The proposed sequence was implemented on a 0.57 T MRI system (Magspec, Pure Devices, Germany) with 10 mm bore size and maximum gradient strength of 1.5 T/m. To validate the obtained flow velocities of PC-MRI, an experimental setup (Figure 2) consisting of two tubes with different inner diameters (1 mm and 2 mm), filled with a solution of water and gadolinium based contrast agent (Vasovist, Bayer Schering, Germany) is used. With a syringe pump (KL-702, KellyMed, China) different flow velocities can be simulated in the tubes. The adjusted velocity in the big tubes is 0.13 cm/s, whereas the velocity in the small tubes is 3.18 cm/s. PC-FIRM was obtained with following acquisition parameters: TR/TE = 30/8 ms, flip angle = 43°, field of view = 10 × 10 mm², spatial resolution = 0.156 × 0.156 mm², slice thickness = 5 mm, low VENC of 0.25 cm/s and high VENC of 5 cm/s. In addition to flow velocity maps calculated form PC-FIRM, reference maps were acquired using flow sensitive radial FLASH.

Figure 3 shows the estimated flow profiles obtained using the PC-FIRM approach for a low VENC of 0.25 cm/s (left) and high VENC of 5 cm/s (right). As expected, phase wrapping is observed when the VENC is set too low, e.g. in the case of the small tube at low VENC. Nevertheless, the characteristic parabolic shape of laminar flow can be observed in all acquisition schemes and tubes. For quantitative analysis of the big tubes, the acquisition with low VENC is considered, whereas the small tubes (characterized by high flow velocities) are evaluated using high VENC. The mean flow velocity of the big tubes was 0.12 cm/s with both methods. In the small tubes, the reference method yielded a mean velocity of 2.82 cm/s, compared to 2.68 cm/s obtained with PC-FIRM.

The proposed PC-FIRM is a fast and robust alternative to Cartesian dual-VENC sequences, incorporating the advantageous of radial encoding to facilitate the acquisition time of PC-MRI. In contrast to other acceleration techniques, PC-FIRM weights coequal k-space data of different VENC to fulfill the Nyquist criterion and fasten the image acquisition. Compared to conventional single-VENC acquisition, dual-VENC could be established in one fourth of the acquisition time. One limitation arises from the characteristics of the selected experimental design, leading to laminar flow profiles with high frequency components. These high frequency components can lead to underestimated flow profiles especially in small tubes and high flow rates. Further acceleration can be achieved by combining PC-FIRM with parallel imaging. Unfortunately, the used MRI system is limited to a single-channel receiver coil. In principle, PC-FIRM can be extrapolated to a multi-VENC approach by combining more than two VENCs without prolonging the scan time.

The introduced dual-VENC phase contrast MRI will increase the accuracy and reduce the acquisition time of flow maps in regions with high velocity differences like neurovascular vessels and aortic branches. Since, some methodological improvements are still necessary, the potential of the PC-FIRM approach could be shown in this feasibility study.
Maurice RÜGER (Lüdenscheid, Germany), Tobias KRAATZ, Jens GRÖBNER, Amir MOUSSAVI
15:40 - 17:10 #46167 - PG427 Would a ROI-specialized SCOTCH Multi-Coil Array improve B0 shimming of the temporal lobes?
PG427 Would a ROI-specialized SCOTCH Multi-Coil Array improve B0 shimming of the temporal lobes?

Ultra-high field functional Magnetic Resonance Imaging (fMRI) with EPI suffers from significant B0 field inhomogeneities. The Multi-Coil SCOTCH Shim Array was designed to reduce these inhomogeneities in the whole brain (WB)[1], based on a PCA of optimized stream functions (OSF). Moreover, based on OSF targeting specific regions of interest (ROIs), a previous simulation study has hinted that ROI-dedicated hardware could improve shimming performance in such ROIs compared to a WB-dedicated device [2]. While some local MCAs have targeted ROIs such as the frontal lobe [3,4], no existing device specifically addresses the temporal lobes (TL). In this work, based on the SCOTCH methodology [1,5], we design an MCA for shimming TLs while controlling B0 field excursions elsewhere, in particular to prevent unexpected image aliasing in case of partial brain imaging. We name it TL-SCOTCH and compare its performance to a WB-SCOTCH when focusing shimming on the TL.

We used a database of 96 B0 fieldmaps obtained at 3T, scaled to simulate 11.7T conditions (mean std after scaling: 115.0 Hz). Subject-specific masks for the temporal lobes were created using linear registration of the Destrieux Atlas’ TL, followed by dilation to ensure coverage despite registration inaccuracy. Consider a Multi-Coil Array of Nc coils placed around a subject's head. The shimming problem aims to minimize B0 inhomogeneities by finding the currents I that minimize the variance (σ²) of the corrected magnetic field: Iopt = arg min σ²(b + CI), with a constraint on individual current intensity. Here, b is the original Nv-vector fieldmap, and C is the Nv x Nc matrix relating the current inputs to the magnetic fields produced by each coil. The design problem consists of designing a set of coils that have the best shimming capabilities. In our study, we focused on MCAs based on SCOTCH design methodology, which relies on Singular Value Decomposition of stream functions computed through an optimization problem similar to the shimming problem, taking total power as a regularization term [5]. We modified the loss function using a weighted variance to target a specific ROI: voxels inside the ROI were weighted 1, while voxels outside were weighted by a parameter w ∈ [0;1]. Thus, w = 1 gives a whole-brain (WB) SCOTCH design, while decreasing w from 1 to 0 progressively increases focus on the ROI. First, we assessed the shimming performance of a WB-SCOTCH for 30 w values ranging from 1 to 1e-3. Correction performance was computed as the relative B0 inhomogeneity reduction (in %): η = 100 x (1 - σ(b0 + bcoils)/ σ(b0)). From these simulations, we identified an optimal w-value (maximal performance in ROI with no decrease in homogeneity outside) and designed a TL-SCOTCH by solving the design problem with this w value. The performance of this new design was compared to that of WB-SCOTCH. Both the TL- and WB-SCOTCH designs consisted of 48 coils, each represented by a 20-turn winding placed on one of three cylindrical formers (radii: 14.10, 14.95, and 15.80 cm; length: 30 cm) (see [1]). Optimal currents were constrained by a current limit of 5A.

The performance of the WB-SCOTCH in the temporal lobes increased from 18.9% with whole-brain shimming (w = 1) to 36.4% with a targeted approach (w = 0.01), reaching a plateau beyond this value (Fig.1). Despite a more homogeneous field inside the ROI, large areas of high inhomogeneity remained (Fig.2). The subsequent TL-SCOTCH was designed with the identified w-value of 0.01. This design consisted of 48 coils presented in Fig.3 and achieved only a modest improvement in focused TL shimming performance (36.8%) compared to WB-SCOTCH (36.4%) (Fig.4). For both designs, shimming performance with w = 0 showed very small improvement compared to w = 0.01 but resulted in significant decrease of inhomogeneity outside the temporal lobes.

The observed plateau in B0 shimming performance (Fig.1) indicates a limit in achievable performance. This could be due to hardware limitations such as current or spatial constraints (cylindrical former and distance from the subject’s head), or to a fundamental limit in B0 correction, as indicated in a previous study [2]. The modest improvement in focused-shimming performance with the TL-SCOTCH design compared to WB-SCOTCH suggests that the flexibility brought by the multiplicity of the coils is sufficient for WB-SCOTCH to produce a wide range of field patterns. For both designs (TL and WB), choosing w = 0.01 allows reaching optimal performance without degrading homogeneity in the rest of the brain, preventing aliasing artifacts. Further work, not presented in this abstract, shows similar results on SCOTCH MCA designs for ventral temporal cortex and prefrontal cortex.

Our results suggest that targeted shimming with a whole-brain SCOTCH can significantly enhance B0 correction in specific ROIs, such as the temporal lobes, while controlling for inhomogeneity in the rest of the brain, without the need for a ROI-specific SCOTCH.
Ulysse BOUREAU (Paris), Qi ZHU, Alexis AMADON
15:40 - 17:10 #47794 - PG428 Design of Controlled Polyphasic Plastisol Phantom: Magnetic Resonance Elastography Calibration and Reproducibility.
PG428 Design of Controlled Polyphasic Plastisol Phantom: Magnetic Resonance Elastography Calibration and Reproducibility.

Phantoms are essential in medical imaging, particularly for calibrating measurement systems. While tissue-mimicking models are commonly used for medical training and surgical procedure enhancement, magnetic resonance elastography (MRE) still lacks phantoms that combine diverse magnetic and mechanical properties. This limitation impedes the analysis of complex samples where precise geometric and anatomical structures are not known in advance. In this work, we develop polyphasic phantoms with controlled properties, suitable for characterizing heterogeneity and studying interfacial effects.

We generated mechanical waves (700Hz) using a compression driver directed toward a cylindrical sample (30mm diameter, 17mm height) placed on a horizontal xz-plate [1]. Horizontal oscillations, perpendicular to the cylinder axis, induced vertical shear waves along y-axis throughout the sample, see Figure 1. The acquisition parameters are: B0 = 9.4T (MRI system Agilent), 8 delay offsets, 3 spatial directions, 4 Gauss/cm bipolar sinusoidal gradient. Fast spin echo (4 ETL), TR/TE=3000/22ms, 18 slices (0.7mm thickness, no gap), 2 averages, 64x64 matrix, 45x45mm FOV, 0.7mm isotropic resolution. The shear stiffness was determined using both inversion NLI [2] and AIDE [3] with two configurations: a fine 5×1×5 grid with random shifts for node averages, and a coarser 1×1×1 grid assuming element homogeneity. To evaluate MRE reconstruction quality, we developed four calibrated polyphasic phantoms of increasing complexity: sectorial designs from simple bisection (P2) to eight-sector division (P8), plus a checkerboard variant (C3) with a regular 3×3 grid pattern (Figure 2-Magnitude). All polyphasic structures were fabricated by cutting homogeneous plastisol samples with different softener ratios (r) using custom 3D-printed molds for precise alignment. Components were reassembled through controlled thermal welding, exploiting plastisol's thermoplastic properties to create integrated solid blocks (Figure 2).

Increasing the softener content from sample #1 to #9 affects the 1H NMR relaxation as follows: T1 remains relatively constant, varying slightly from 553 to 515 ms, whereas T2 increases linearly with r, ranging from 19.5 to 26.1 ms (data not shown). The quasi-linear r-T2 correlation suggests T2 could serve as an indirect mechanical property marker. Shear stiffness decreases with increasing r, following a slightly non-linear trend (33-10 kPa, Figure 3). Both methods yield consistent shear modulus values (μ±∆μ) with good agreement across samples. AIDE-fine results average 3.7 kPa higher than NLI, while NLI shows superior reproducibility (mean deviation: 0.5 kPa vs. 1.3/1.6 kPa for AIDE). Contrast analysis between compositions with varying softener ratios in samples #(1-7, 3-5, 6-7) using Cohen’s formula reveals that shear stiffness exhibits at least 46% higher contrast than magnetic properties (T1, T2) and damping ratio across all tested regions (Figure 4). Comparison of stiffness values (μ±∆μ) between homogeneous and polyphasic phantoms (Figure 2) reveals excellent agreement for the P2 phantom (NLI: 30.3±0.7 kPa vs. 29.7±1.1 kPa at #1 and 11.4±0.4 kPa vs.11.5±0.8 kPa at #8; AIDE: 36.5±2.9 kPa vs. 31.8 kPa and 13.6±2.7 kPa vs. 14.5 kPa respectively), while the more complex P8 phantom shows good overall correspondence with a slight underestimation of stiffer regions and overestimation of softer ones (NLI: 24.3±1.8 kPa vs. 27.5±0.9 kPa at #2 and 16.6±1.8 kPa vs. 15.5±0.4 kPa at #6; AIDE:26.8±3.0 kPa vs. 30.3 kPa and 19.0±2.6 kPa vs. 18.6 kPa respectively).

Welding process evaluation comparing samples with identical r ratios, with and without welding, showed nearly identical results (9.9±0.5 vs. 10.1±0.5 kPa for NLI), demonstrating that the process doesn't significantly degrade sample properties (data not shown). In polyphasic samples, both algorithms show systematic tendencies, underestimating μ in stiffer regions while overestimating in softer ones with higher standard deviations. For instance, C3 phantom contrast #3-5 regions dropped significantly from 8.83 in homogeneous samples to just 1.53.

Both algorithms agree well in homogeneous samples with consistent shape reconstructions, but NLI excels in polyphasic samples with more accurate boundaries. As sample complexity increases, contrast between regions diminishes, yet both algorithms still distinguish different zones effectively despite shifted absolute values. For tissue characterization, relative stiffness values remain adequate for comparison despite reduced contrast. Plastisol's reversible thermal properties withstand multiple heating-cooling cycles without degradation, enabling complex phantom construction. Its viscoelastic properties can be tuned by adjusting softener ratio (r) for precise tissue-mimicking. Mechanical contrast (μ) significantly outperforms conventional imaging contrasts (M0, T1, T2), making plastisol phantoms excellent candidates for refining MRE experiments.
El-Farid OUSSEN (Montpellier), Christophe GOZE-BAC, Maida CARDOSO, Sebastien ROUSSET, Yvan DUHAMEL, Gille CAMP, Eric ALIBERT, Alain CHARBIT, Jonathan BARES, Elijah VAN HOUTEN, Marion TARDIEU, Bertrand WATTRISSE
15:40 - 17:10 #47929 - PG429 Evaluation of the Safety of an RF Array for Human Head MRI at 9.4T in the Presence of an EEG Cap.
PG429 Evaluation of the Safety of an RF Array for Human Head MRI at 9.4T in the Presence of an EEG Cap.

Ultrahigh Field (UHF) MRI (B0≥7T) allows for increased image resolution and SNR in brain studies compared to clinical systems with lower fields. One of the most popular methods of MRI brain functionality study, fMRI, has low temporal resolution. In contrast, electroencephalography (EEG) offers higher temporal resolution and enables tracking and comparing neural processes during an MRI study[1]. However, since the UHF wavelength becomes comparably lower than 1 m in free space and 10 cm in brain tissues, the presence of a conductive EEG cap can increase the local specific absorption rate(SAR). Therefore, it is essential to carefully evaluate RF safety risks of combined MRI and EEG studies at UHF[2].

In this work, we performed numerical simulations of a setup combining a 16-channel Tx-only loop array and a 31-channel EEG-cap (Fig. 1A, B) using CST Studio 2024 (Dassault Syst.). Simulations were performed using the Duke voxel model, all studies were performed in CP mode. To evaluate the results of numerical simulations, we performed B₁-field measurement (AFI[4]) on a home-made gel phantom (Fig. 1C) in the presence of a 31-channel EEG cap (Easycap, Brain Products) with copper leads, to estimate their influence on the performance of the Tx-array at 9.4 T. The advantage of this phantom is its conductive surface, which is able to mimic human skin impedance, allowing realistic EEG operation. The phantom is composed of sucrose, gelatin, salt, and water. It has a relative permittivity of 36.8 and a conductivity of 0.59 S/m. All measurements were performed using a Siemens Magnetom+ 9.4T full-body MR scanner.

Numerical simulations with the phantom and the EEG setup showed a 14% decrease in B₁⁺ (Fig. 2A, C), averaged over a 130 mm region of the voxel model down from the top (corresponding to the human brain size). A similar B1+ drop was observed in the experiment. Fig. 2 B and D, Fig. 3A and C show SAR10g and B1+ maps in the sagittal plane through SAR10g maximum, numerically obtained without the EEG cap for the Duke voxel model. pSAR10g locations are marked with black arrows. Fig. 3 B and D present the results with the EEG cap. In the presence of the cap, the peak SAR10g value in voxel models moved under one of the electrodes and increased from 0.39 to 0.43 W/kg.

The RF electromagnetic field, created by coils, excites currents on the surface of the EEG leads and creates a secondary field. This disrupts B₁⁺ under the cap in the superior region of the phantom and voxel model, decreasing the quality of the MR image. To address this limitation in multimodal imaging, EEG leads must be shielded from the RF coil to prevent coupling. For example, one can wrap the leads with a metal shield incorporating an RF trap to create high impedance for EM wave propagation along the leads, introduce resistors or RF chokes, or replace copper leads with a material with high resistance[3]. The local increase in SAR10g in the voxel model can be explained by numerical overlap between conductive electrodes and voxels. The solver assigns RF electrical current from the electrode directly to the voxel of tissue, without accounting for resistance between the electrode and the tissue. In the future, this issue will be solved by adjusting simulation parameters.

The introduction of an EEG cap during MRI leads to a decrease in image quality due to B₁⁺-field drop. It also causes a moderate increase in pSAR10g at 9.4 T. Under these conditions, health risks can be mitigated by applying standard SAR safety control protocols.
Egor BEREZKO (Tuebingen, Germany), Sebastian MUELLER, Joern ENGELMANN, Vinod KUMAR, Georgiy SOLOMAKHA, Jonas BAUSE, Nikolai AVDIEVITCH, Klaus SCHEFFLER
15:40 - 17:10 #47868 - PG430 Feasibility at 7 Tesla of spin- and gradient-echo dynamic susceptibility contrast MRI for cerebral microvascular characterization.
PG430 Feasibility at 7 Tesla of spin- and gradient-echo dynamic susceptibility contrast MRI for cerebral microvascular characterization.

Dynamic Susceptibility Contrast (DSC) MRI is a valuable tool in the diagnosis and follow-up of patients with adult-type diffuse glioma [1]. While the recommended approach for DSC-MRI in clinical practice is to use a gradient-echo sequence, combined spin- and gradient-echo (SAGE) techniques [2–4] could enhance the characterization of such tumors. Despite the clinical feasibility of SAGE-DSC at 3T and the anticipated superior DSC performance at higher field strengths [5], there are no studies that have explored the feasibility of SAGE-DSC at 7T in humans. This study aims to address this gap by developing an optimized protocol for SAGE-DSC at 7T and investigating its feasibility for cerebral microvascular characterization in patients with glioma.

This prospective study was performed as part of the IRB-approved Vascular Signature Mapping (VSM) study (ClinicalTrials.gov ID: NCT05274919). All patients provided written informed consent. Eight patients under surveillance after glioma treatment (4 female, mean age 56 years) were scanned on a 3T MRI-system (Philips Achieva or GE Signa Premier) and on a 7T Philips Achieva MRI-system. At 7T, the contrast agent protocol and the SAGE-DSC scan parameters varied across patients for protocol optimization. rCBV maps at 3T and 7T were obtained with IntelliSpace (Philips Healthcare) applying BSW leakage correction [6]. The resulting maps were visually compared to each other and to the radiologist’s interpretation of the clinical data (ASL, T1w, T2w). Furthermore, 3T and 7T data were compared using ΔR2(*) hysteresis loops [2]. Lastly, an open-source simulation model [8] was used to investigate the behavior of the spin- and gradient-echo signals for varying vessel radii [9] at higher field strength.

Protocol optimization: Starting from the clinical protocol at 3T, the contrast agent dose had to be reduced from 15 mL to 10 mL 0.5M Clariscan to achieve a time course with a sufficiently sharp bolus passage. Contrast administration was performed through manual injection (approx. 3 mL/s) as no 7T compatible power injector was available. The sequence parameters were set to TE(GRE1/GRE2/SE) = 10.7/51.2/81.6 ms, 11 slices and 90 time points. Perfusion assessment: Two patients could not be assessed due to insufficient data quality of the 7T data. In one patient, the clinical data showed no increased perfusion while this was visible on SAGE-DSC, and later follow-ups showed indications of tumor progression at this same location. The radiologist’s observations based on the clinical data agreed with the SAGE-DSC data in the rest of the patients. One of these patients, shown in Figure 1, exhibited elevated perfusion, which was better discernible on 7T. Vascular architectural imaging: In patients 6-8, protocol parameters and data quality were sufficiently consistent to allow for characterization of the microvasculature. The hysteresis loops (Figure 2) show a comparable shape and direction at 3T and 7T. Signal simulations: From the signal simulations, ΔR2(*) was computed for different vessel radii at 3T and 7T. The results are shown in Figure 3. The specificity of the spin-echo to the microvasculature – indicated by the peak in ΔR2 - appears to shift towards smaller radii with increasing field strength. Additionally, the gradient-echo seems to become more specific to smaller vessels at a higher field strengths, as shown by the peak in ΔR2*.

The first aim of this work was to establish an optimized protocol for SAGE-DSC at 7T in terms of contrast agent administration and imaging parameters. We have observed that good data quality could be achieved with a dose reduced to 2/3rd of the dose at 3T. Furthermore, a trade-off between temporal resolution and coverage was found for the obtained parameter settings. The total scan time could be decreased by lowering the number of time points to 60, but this could affect the performance of the BSW leakage correction [6]. The second objective of this work was to evaluate the feasibility of vascular characterization at 7T using SAGE-DSC. Overall, the rCBV maps generated at 3T and 7T showed good agreement with the clinical evaluation, and the hysteresis loops showed similar behavior at 3T and 7T. Strikingly, the signal simulation showed the onset of microvascular specificity in the gradient-echo signal at higher field strengths. It is unclear how this can be explained by the theory of diffusion narrowing regime [3] and further investigation is warranted. A limitation of this preliminary study is the small number of subjects and further validation is necessary.

This study optimized a scan protocol for SAGE-DSC at 7T. In addition, promising first results considering its application for microvascular characterization were obtained. Indeed, the rCBV maps and hysteresis loops showed similar behavior at 3T and 7T. Further validation in a larger group of preoperative patients with glioma is necessary.
Karen VAN DER WERFF (Rotterdam, The Netherlands), Danielle VAN DORTH, Krishnapriya VENUGOPAL, Esther WARNERT, Dirk POOT, Frans VOS, Marion SMITS, Chad QUARLES, Juan HERNANDEZ-TAMAMES, Johan KOEKKOEK, Jeroen DE BRESSER, Matthias VAN OSCH
15:40 - 17:10 #47690 - PG431 Quantitative susceptibility mapping of the cervical spinal cord at 7 Tesla.
PG431 Quantitative susceptibility mapping of the cervical spinal cord at 7 Tesla.

Quantitative susceptibility mapping (QSM) is a non-invasive method of quantitatively mapping magnetic susceptibility in vivo. Ultra-high field MRI enhances the susceptibility contrast and increases signal-to-noise ratio (SNR) of the MR signal [1,2]. QSM of the brain at ultra-high field is a promising technique to detect iron accumulations, associated with several neurodegenerative diseases [1]. Iron accumulation in the spinal cord is also an indicator of neurological diseases, such as multiple sclerosis (MS) [3]. However, no studies have yet explored QSM of the spinal cord. MRI of the spinal cord is more challenging than the brain, due to small cross-sectional area and strong artifacts from static B0 inhomogeneities and physiological B0 fluctuations. Methods developed for the brain may not be optimal in the spinal cord. This work aimed to explore and optimize parameters of existing QSM acquisition sequences and algorithms for application to QSM of the spinal cord at 7 Tesla.

Data was acquired in 5 subjects on a 7T Magnetom Terra system (Siemens Healthineers), using a 1Tx, 24Rx C-spine coil (MRI.TOOLs). A 3D multi-echo GRE sequence (0.75 mm isotropic resolution, TR 27ms, FOV 144mm, R = 2, FA 17°, ASPIRE coil combination [4]) optimized for brain QSM was used as starting point. In one subject, the sequence was acquired repeatedly with one parameter changed per acquisition (Fat Suppression (FS), Phase Stabilization (PS), receive bandwidth 260 vs 300 Hz/pixel, signal scaling factors, Partial Fourier (PF)) to optimize the acquisition. Finally, the optimized sequence (TE 4.08/9.18/14.28/19.38, no FS, PS, 260 Hz/pixel, signal scaling, no PF) was acquired with 8 repetitions in 4 subjects. Spinal cord masks were segmented using sct_deepseg in Spinal Cord Toolbox [5]. A gray matter (GM) mask was obtained with sct_deepseg_gm, and a white matter (WM) mask was calculated by subtracting the GM mask from the spinal cord mask. The SNR of each acquisition was calculated within the WM mask on successive volumes of eight slices. Different algorithms for calculating QSM images were evaluated using the SEPIA toolbox in MATLAB R2024b. All phase images were unwrapped using SEGUE. Next, all parameters in five background field removal algorithms (LBV, PDF, SHARP, RESHARP, VSHARP) were tested and compared using visual inspection, standard deviation, and contrast-to-noise (CNR). Using the local field from the PDF background field removal, four dipole inversion algorithms (iLSQR, FANSI, TKD, MEDI) were compared using visual inspection, standard deviation, and CNR. Standard deviation and CNR were calculated on eight-slice volumes before averaging over the whole volume. Averaging over repetitions was performed after the QSM pipeline. With the optimized QSM pipeline (SEGUE, PDF, iLSQR), the standard deviation and CNR in the resulting QSM images were evaluated to assess the effect of averages.

Magnitude and phase images acquired with different imaging parameters showed comparable visual image quality. However, the SNR of the magnitude images without FS, with 260Hz bandwidth, and no PF had consistently higher SNR (Fig. 1). Fig. 2 shows results from different algorithms in the QSM pipeline. SEGUE effectively removed all phase wraps, without affecting phase values in areas without wraps. Background field removal with PDF yielded lower standard deviation and higher CNR in the local field compared to the other algorithms. Of the four dipole inversion algorithms tested, iLSQR performed best both in terms of standard deviation and CNR. The results of the algorithm comparison were consistent between subjects, despite large inter-subject CNR variability. Fig. 3 shows standard deviation and CNR of the QSM images with different numbers of averages. As expected, more averages decreased the standard deviation. The CNR generally increased with more averages, but with a tendency to plateau in individual subjects. CNR values were clearly higher in two of the subjects (0.86, 0.45, 1.05, 0.05). The QSM images from the optimized pipeline are shown in Fig. 4. Visually, contrast between gray and white matter was clearly distinguishable in two of the subjects, corresponding to the subjects with higher quantitative CNR values.

The aim of this work was to optimize existing QSM algorithms for use on cervical spinal cord data. Background field removal with PDF and dipole inversion with iLSQR performed consistently better than other algorithms. With eight averages, the resulting QSM images showed clear GM/WM contrast in half of the subjects. The results demonstrate the potential of QSM as a promising technique, while highlighting challenges in the spinal cord. Further work to reduce physiological noise may improve the quality of the data, while targeted algorithms to remove susceptibility effects from vertebrae may improve background field removal.
Karen Johanne ØFSTAAS (Trondheim, Norway), S. Johanna VANNESJO
15:40 - 17:10 #46568 - PG432 Quantification of the arterial input function during PCASL perfusion imaging using ASLIF – First results.
PG432 Quantification of the arterial input function during PCASL perfusion imaging using ASLIF – First results.

Pseudo-continuous arterial spin labeling (PCASL) is commonly used in in ASL experiments due to its superior signal-to-noise ratio compared to other ASL sequences like pulsed labeling techniques. However, the PCASL labeling process is prone to several influencing factors like local field inhomogeneity within the labeling area or blood flow velocity. Therefore, apparently underperfused vascular regions measured with PCASL might not necessarily reflect an actual perfusion deficit. The arterial spin labeled input function method (ASLIF) allows to qualitatively visualize the PCASL labeled bolus during the labeling process itself without the need for separate measurements, restrictions to the labeling scheme or alteration to the blood magnetization, in contrast to existing methods [1-3]. In this work, first results of an ASLIF quantification model are presented which enables quantitative labeling efficiency (LE), flow velocity and T1 estimations.

Model: Equation (a) in Fig. 2 shows the established signal equation of the acquired ASLIF signal with ∆S denoting the control-label subtracted ASLIF signal, β a proportionality constant, M0b the equilibrium magnetization of the blood/fluid, LEeff the effective PCASL labeling efficiency, Vavg the average flow velocity, c(t) being an averaged delivery function across the velocity distribution, T1b the longitudinal relaxation time of the blood/fluid and TT(v) the transit time between PCASL and ASLIF slice. The model can be seen as a modification and extension to a previously published model for ASL signal in large arterial vessels [4]. To eliminate the pre-factor, a short reference measurement is carried out at the beginning of the scan in which the PCASL labeling is replaced by a PASL inversion, as this has a more robust labeling efficiency. By combining both signal models a model fit for LEeff, Vavg and T1b can be established as depicted in Equation (b) of Fig. 2 with ∆Sref and LEref being the ASLIF signal and labeling efficiency of the reference measurement. Phantom imaging: The flow phantom QASPER [5] (Fig. 1) was examined with an in-house developed ASLIF sequence [4] on a 3T MR scanner (MAGNETOM Skyra, SIEMENS Healthineers, Erlangen, Germany). The ASLIF images, as depicted in Fig. 1, were acquired with the following parameters: 4 Hadamard encoding cylces [6,7], subbolus duration = 1400ms, TR-PCASL = 1420us, 1D spatial encoding perpendicular to the flow, matrix size = 64x1x1 (x,y,z), mean z-gradient = -0.7mT/m, slice distance = 29.5mm, slice thickness = 17.1mm, FOCI pulse for PASL inversion. The phantom had a flow rate of 350ml/min corresponding to about 20.6cm/s of flow velocity and used a perfusate with a T1 of about 1.8s. Simulation: An in-house developed Python ASLIF Bloch simulation was used for the model validation. The simulation assumes a 3D laminar flow profile and a straight and static flow between the PCASL and ASLIF excitation planes. Dispersion effects were neglected. The simulation used T2 = 150ms and LEref = 95%. The used T1 was varied between 500-2000ms as well as the maximum laminar flow velocity between 5-70cm/s for different average labeling efficiencies.

Figure 3 shows the fit results for the ASLIF simulation together with set reference values of the average labeling efficiency and blood T1. The model fit accurately estimates T1b and the estimated effective labeling efficiency closely matches the average labeling efficiency across the flow distribution with deviations below 5%. Figure 4 shows the model fit together with the measured ASLIF signal for the beginning of a PCASL labeling period on a flow phantom. T1b was set according to the flow phantoms specifications. The fit results show good agreement of the estimates to the set flow velocity and the expected labeling efficiency.

The ASLIF model fit accounts for the labeling efficiency, flow velocity and T1b of the PCASL labeled arterial input function. However, the model fit currently does not account for differences in flow dispersion between the PCASL and PASL based ASLIF measurements. Therefore, for the phantom data only the beginning of the ASLIF signal with equal flow dispersion between the PCASL and PASL based ASLIF measurements was used. Due to the short time interval no reliable T1 estimate could be computed. The simulation yields reliable T1b estimates and shows a close correlation of the modeled effective labeling efficiency to the average labeling efficiency and thus its use for respective quantification.

A quantification model for the ASLIF signal was created that enables estimates of the labelling efficiency and flow velocity in PCASL measurements. The model was validated with the help of simulations and experiments in the flow phantom. Future plans include in-vivo application and the extension of the fit model to account for different flow dispersion between the ASLIF and the reference measurement for simultaneous T1b estimations.
Luis Andrea HAU (Hamburg, Germany), Thomas LINDNER, Jens FIEHLER, Matthias GÜNTHER
15:40 - 17:10 #47613 - PG433 Impact and correction of irregular heartbeats on inversion-recovery multi-shots cardiac late gadolinium enhancement images.
PG433 Impact and correction of irregular heartbeats on inversion-recovery multi-shots cardiac late gadolinium enhancement images.

Segmented cardiac MRI data acquisitions, such as late gadolinium enhancement (LGE), divide k-space into shots, each shot capturing a portion of the signal at every heartbeat. LGE aims at directly visualizing the infarct lesion through a positive and maximal contrast exploiting the magnetic properties of the tissues, hence relying on magnetization equilibrium between shots to ensure signal consistency across the final k-space. However, irregular cardiac cycles result in variable recovery periods, disrupting this pseudo steady state and undermining image quality and contrast efficiency. Through numerical simulations and acquisitions, this study investigates how irregular heart rates induce artifacts in 2D LGE sequences. Eventually, advanced image reconstruction is proposed to reduce artifacts by substituting corrupted k-space lines as a workaround.

A 2D inversion-recovery segmented FLASH sequence with interleaved reordering and 8 shots (25 segments per shot) was acquired on a 3T MRI scanner (MAGNETOM Cima.X, Siemens Healthineers, Erlangen, Germany) and numerically simulated using the MRzero framework [1] based on Phase Distribution Graph [2]. To best approximate cardiac imaging, the T1MES Phantom was used, with theoretical T1, T2, T2*, B0 and B1+ as provided in [3]. Two conditions were simulated and acquired: a constant and a variable heart rate (HR) (Figure 1). A fixed inversion time (TI) of 250ms was chosen to maximize the contrast between the tubes representing the late post-contrast infarcted (T1=284ms) and the remote myocardium (T1=525ms). The acquisition window was positioned at end-diastole. When one RR interval was reduced, the next trigger occurred within the acquisition window and was missed, prolonging longitudinal T1 recovery for the next shot, thus corrupting corresponding k-space (Figures 1 and 2). Images from regular HR and with one corrupted shot from irregular HR were reconstructed using a simple Fourier transform (FFT). Then the corrupted shot was removed and image was reconstructed using compress sensing (L1-ESPIRiT using BART Toolbox with a L1-wavelet regularization term of 0.03). Images were compared using three metrics: Percent Signal Ghosting [4] (PSG) computed as PSG = | (Top+Bottom) - (Left+Right) | / (2*Signal), the signal enhancement [5] (SE) defined as the relative difference between the late post-contrast infarcted and the normal myocardium, and the normalized mean squared error (NMSE) on the whole image.

Irregular ECG events creates artifacts on images that can be significantly reduced by removing the corrupted lines and using compress sensing (Figure 3). The severity depends on the corrupted lines k-space position, with higher ghosting when the center is affected, and more pronounced artifacts as the recovery duration of the corrupted shot grows (Figure 4). The simulations modeled two scenarios: lengthening RR cycles (RR = 1–1.4s), and shortened RR cycles with a missed trigger (RR > 1.5s).

This simulation study demonstrates the significant impact of irregular heart rate in segmented MRI sequences with inversion-recovery preparation. Inconsistent timing between shots introduces strong signal fluctuation in the pseudo steady state signal, resulting in signal ghosting and affecting contrast. We show that CS could be a valuable reconstruction candidate to tackle artifacts due to broken equilibrium of the magnetization.

Adverse ECG events causing disrupted equilibrium magnetization and k-space inconsistencies can be effectively addressed by identifying corrupted shots and removing the corresponding k-space lines before CS reconstruction. Future work will explore 3D LGE and also the limitations of this approach before applying it to in vitro and in vivo studies and assess its impact on clinical cardiac MRI scans to further optimize image quality and diagnostic reliability.
Cyprien BOUTON (Lyon), Thomas TROALEN, Stanislas RAPACCHI, Pierre CROISILLE, Magalie VIALLON
15:40 - 17:10 #46174 - PG434 Modeling of Direct Saturation from an Off-Resonance Preparation Pulse.
PG434 Modeling of Direct Saturation from an Off-Resonance Preparation Pulse.

In the context of quantitative MRI protocols using sequences prepared with off-resonance radiofrequency (RF) pulses (e.g., Chemical Exchange Saturation Transfer [CEST], Magnetization Transfer [MT]), the usual modeling of the pulse's impact on the on-resonance water component relies on a pure longitudinal magnetization attenuation – also referred to as “direct saturation” – at an exact frequency offset (Δf) [1]. However, this model does not account for the spectral response of the pulse, which is determined by its shape and duration. The residual on-resonance RF response can lead to unpredictable and non-negligible refocusing of the magnetization of the water component, which can become amplified in sequences where RF events repeat within a short delay relative to T2 (short TR, pulse trains), as previously observed in inhomogeneous MT (ihMT) protocols [2] (Figure 1). In this work, we propose and evaluate an advanced model that incorporates this spectral response at the MT-prepared SPGR sequence level in order to predict suitable and unsuitable regimes of direct saturations.

The proposed model is built upon the Extended Phase Graph (EPG) formalism [3] for signals’ simulations, accounting for the various sequence features (RF, spoiling, gradients, relaxation delays) and providing an efficient way to predict any magnetization refocalisation (echoes). It is extended by discretizing the off-resonance preparation pulse into a series of time-constant operators based on the Bloch equations, thus intrinsically taking into account its spectral response across all configuration states. This extension is compared to the usual discrete-frequency saturation model (“Wf”). In order to challenge our model, synthetic signals of a homogeneous phantom (H₂O + NiSO₄ at 3.75 g/L; with T1/T2 = 225/70 ms estimated at 3 T and an apparent diffusion coefficient of 2.2 µm²/ms) are simulated with a preparation pulse (10-ms gaussian pulse, B1peak = 1.95 µT, FWHM = 280 Hz, and Δf = -200 Hz; MTw) and without (MT0) for normalization purpose, while incorporating experimentally estimated B0 and B1+ field inhomogeneities. The signal maps MTw/MT0 are compared to experimental data acquired at 3 T (Siemens MAGNETOM Vida) using the same sequence features (Figure 2) as those in simulation. The common sequence parameters were: TR = 30 ms, TE = 2.0 ms, flip angle (FA) = 5°, ratio of the spoilers’ moment between preparation and readout = 3/1, and no RF spoiling at the readout pulse level.

Experimental and synthetic images are shown in Figure 3. The usual (synthetic Wf) model drastically fails to predict the signals’ behavior, and assumes that the on-resonance water component remains mainly unaffected outside regions of high static field inhomogeneities (red arrows; for ΔB0 ≈ -150 Hz, the off-resonance pulse frequency becomes close to the resonance frequency of local spins). Conversely, the stepwise model (synthetic EPG) more faithfully reproduces the experimental image, and succeeds in predicting specific image patterns.

The EPG model that discretizes the off-resonance RF pulse shape offers an accurate representation of the NMR signal. This achievement comes with a considerable computational cost due to the recursive nature of the EPG formalism.

We proposed an EPG-based model for the characterization of direct saturation in off-resonance pulse-prepared sequences. This framework can be used in quantitative MT and CEST to determine off-resonance frequency ranges for which the Wf model remains valid.
Lucas SOUSTELLE (Marseille), Andreea HERTANU, Maxime GUYE, Guillaume DUHAMEL, Thomas TROALEN, Olivier M. GIRARD
15:40 - 17:10 #47369 - PG435 Open source tool for the measurement and calculation of the Gradient Impulse Response Function.
PG435 Open source tool for the measurement and calculation of the Gradient Impulse Response Function.

Since its inception, the Gradient Impulse Response Function (GIRF) has become a popular tool for characterising gradient system imperfections in MR imaging[1]. Imperfections, such as those caused by eddy currents induced by the gradients themselves, cause the gradient field experienced by the sample to differ from the ideal and requested field. Imperfections lead to artefacts and a degradation of image quality. This is a particular issue in non-cartesian imaging[2], which relies upon fast switching gradients, and the GIRF has been used successfully in reconstruction to reduce these artefacts[3], as well as optimizing pulse design[4]. However, despite wide use cases, there is no end-to-end, open source tool for complete measurement and calculation of the GIRF, with currently available resources either incomplete, out of date, or reliant on field camera hardware[1,5,6]. This work presents a complete, easy to use tool for the measurement and calculation of the self and B0-cross terms of the GIRF which does not rely on additional hardware. Code for sequence generation, data processing, and GIRF creation is included in a single open-source repository.

The implemented GIRF measurement is based on the optimized method introduced by Robison[7] using positive and negative slice offsets and triangular gradient blips. Additionally, by default, 5x5 2D phase encoding[8] is used with the thin slice method to reduce T2* decay. This allows for longer sampling of any long-time-constant eddy currents (out to about 400 ms), improving spectral resolution of the GIRF. Other parameters including the slice offset, slice thickness, fov, and the number of triangular gradients are user configurable, but by default, these parameters follow the protocol introduced by Wu et al[5]. This method implements interleaved reference scans, with the scheme also following the protocol of Wu et al[5]. The sequence is implemented using Pypulseq[9] to be agnostic to the scanner vendor or version. The calculation of the GIRF is performed in Python and beyond minor improvements and modifications to account for the phase encoding steps, it is a translation of the Matlab code provided by Wu et al[5] in the optimized calculation. Both the self term (e.g. the effect of the x gradient on x) and the B0 cross terms (e.g. the effect of the x gradient on B0) of the GIRF are calculated. The tool lets the user choose how much of the ADC readout to use, allowing them to decide the balance of spectral resolution and SNR. All of the code for the sequence, data processing and GIRF calculation are available at https://github.com/jbbacon/GIRF_PE_Python. The code is written in Python and has complete terminal integration. The package manager, Pixi, may be installed by the user allowing them to set up an environment from which the tool can be used.

The code for sequence generation and data processing is made fully open-source. As an example of its use, the GIRF on a 3T Siemens Prisma scanner and a Siemens Magnetom 7T Plus were measured. The default sequence parameters were used with a spherical oil phantom to measure and calculate the GIRF. The magnitude of the self and cross terms of the GIRF with slice offsets in the ‘z’ gradient direction are displayed in Figures 1 and 2 using an ADC readout time of 100 ms during calculation. The ‘x’ and ‘y’ gradient direction terms were also measured and calculated. The processed data from these examples can be found at https://zenodo.org/records/15352984.

The tool was successfully used across multiple scanners to measure and calculate the self and B0 cross terms of the GIRF. The tool used optimized protocols and 2D phase encoding to extend the ADC readout time allowing for improved spectral resolution. The code has only been tested on data from Siemens VE-line scanners, and as such, the processing of raw data acquired from the scanner is only possible for Siemens data files. We hope to broaden the examples in the future. We also plan to implement calculation of linear cross-terms (e.g. the effect of the x-gradient on y).

This study introduces an end-to-end, open source tool to measure and calculate the GIRF. The tool is easy to use with full terminal integration and makes use of optimized protocols and 2D phase encoding.
James B BACON (Oxford, United Kingdom), Peter JEZZARD, William T CLARKE
15:40 - 17:10 #46396 - PG436 Off-Center Eddy Current Correction for Improved Fat Suppression in Shoulder FSE.
PG436 Off-Center Eddy Current Correction for Improved Fat Suppression in Shoulder FSE.

Eddy currents are a well know source of gradient imperfections that can lead to a variety of imaging artifacts. Therefore, eddy current correction (ECC) by gradient pre-emphasis [1] is implemented on all modern MR systems. It is less well-known that eddy current related magnetic fields often manifest in spatially higher orders [2,3]. This becomes relevant when performing imaging at off-center regions, such as in shoulder MRI. Here, commonly applied spectral fat-suppression can fail due to the off-resonance created by higher-order eddy currents. To address this issue, we developed an off-center optimized 0th and 1st order ECC and applied it to fat-suppressed FSE shoulder imaging.

Field Camera Measurements To measure the spatio-temporal eddy current responses, the field evolution after playing out a long trapezoid gradient in x,y and z direction were recorded using a dynamic field camera (DFC) by repeating the measurement multiple times with shifted delays and by placing the DFC at multiple positions along the x-Axis to cover all off-center imaging regions. Phantom Measurements In addition to the DFC measurements, a time-resolved (multi-echo) FFE readout following a long trapezoid gradient was performed on phantoms of x:45 cm × y:15 cm × z:15 cm. The magnetic field information was extracted from the phase information of the phantom for each echo. Processing From the measured fields, eddy current correction parameters that parameterize the multi-exponential pre-emphasis ECC kernel were calculated by minimizing the difference of the measured fields and the simulation of the ECC fields, which were calculated by applying the ECC kernel to the nominal gradient input. In-vivo Imaging Subsequently fat-suppressed shoulder FSE was performed at 20 cm off-center in the x-direction with regular iso-center optimized ECC (optimized for imaging at iso-center) and the proposed off-center optimized ECC. To distinguish ECC effects from potential static B0 effects, imaging was performed twice, once with phase encoding direction in AP and once with phase encoding in PA direction.

Eddy currents and off-center optimized ECC Figure 1 shows an example of an eddy current response following the trapezoid input gradient lobe in x, y, and z direction respectively. When using regular (iso-center optimized) ECC (Fig. 1 left), off-resonance did not show visible gradients in the iso-center, indicating that iso-center optimized ECC is working well. However, in regions being off-center in x direction, substantial off-resonance gradients are visible. When applying simulated off-center optimized ECC for a target x-off-center of 20 cm, where shoulder imaging is typically performed, the eddy current gradients in this region can be significantly reduced (Fig 1, right). When quantifying the eddy current related field off-set and gradients over time (Fig. 2), applying regular (iso-center optimized) ECC (Fig. 2a) results in off-resonance of over 100 Hz and several hundred Hz/m off-resonance gradients in off-center regions. These can be strongly diminished when using the proposed off-center optimized ECC (Fig 2b).

Phantom-based measurements: Initial phantom-based experiments showed a strong discrepancy against the DFC based field measurements. By comparing with the DFC measurements, it was possible to identify that the phantom-based field measurements were sensitive to static B0 off-resonance. After adjusting the sequence and processing to diminish these effects, the phantom-based and DFC-based ECC simulations showed similar behavior (Fig. 2b,c). Some remaining differences (Fig. 2b,c) are observed during the period directly after the gradient lobe where the simulated ECC based on the phantom data was exceeding 15 Hz and 100 Hz/m respectively, possibly due to field echoes transitioning into steady-state. Errors of such magnitude however may not strongly effect spectral fat suppression and thus may be acceptable. In-vivo imaging (Fig. 3): For the images with regular (iso-center optimized) ECC, incomplete fat suppression and local signal reduction are visible. These effects changed when switching the phase encoding direction from AP to PA, indicating that the reason for the artifacts is incomplete ECC. These effects were strongly diminished, and the images with non-switched and switched PE-direction were more similar to each other, when applying off-center optimized ECC.

We developed a method to achieve off-center optimized 0th and 1st order ECC, which strongly diminished eddy currents for imaging in a targeted off-center region, and demonstrated improved fat suppression in shoulder FSE. In addition, we showed that it was possible to develop and validate a phantom-based ECC using field camera measurements as a reference.
Bertram WILM (Zurich, Switzerland), Ryohei TAKAYANAGI, Yuki SAKATA, Masaaki UMEDA
15:40 - 17:10 #46304 - PG437 Robust variable flip angle T1 mapping for imperfect field conditions.
PG437 Robust variable flip angle T1 mapping for imperfect field conditions.

Quantitative MRI (qMRI) focuses on the direct measurement of tissue parameters and composition [1-4]. Absolute measurements of tissue composition facilitates reliable comparisons across subjects and imaging systems [3,5,6]. Among qMRI parameters, the longitudinal relaxation time T1 is widely used in assessing various pathologies, including brain diseases, iron overload, cancer, and cardiac disorders [7]. However, T1 values vary substantially across methods and systems [8]. Variable flip angle (VFA) techniques allow fast 3D T1 mapping but are sensitive to radio frequency (RF) field (e.g. B1) inhomogeneities, especially at high fields. Incorporating B1 maps into post-processing improves accuracy, but increases scan time and complexity [9]. As well, it adds the possibility of B1-map introduced errors. Robust excitation pulses that reduce B1 and B0 dependence could improve VFA-T1 mapping accuracy. We present RF pulses by optimal control (OC) meeting these requirements and demonstrate improved accuracy in simulations and phantom experiments on a preclinical 7T system.

The core of this work is a pair of excitation pulses designed by optimal control with robustness to imperfections in the B0 and B1 field [10,11]. Optimization objectives were: • Non-selective excitation with flip angles 6° and 20°. • B1 robustness for a range of 75% to 120% scale of the nominal amplitude (50 μT). • B0 robustness for -4 to 4 ppm, assuming a field strength of 7T. • Short pulse duration. To compare VFA based on OC with commonly used RF pulses, we designed two block pulses with the same flip angles and amplitudes (50 μT) as OC. VFA T1 mapping is then simulated using the full Bloch equations, solved with symmetric operator splitting [12], over a broad range of field imperfections, and assuming relaxation times T1 = 2000 ms and T2 = 500 ms. We implemented the optimized RF pulses and the block RF pulses into a VFA T1 mapping protocol on a Bruker BioSpec 70/30 (Bruker, Ettlingen, Germany). Two 3D non-selective spoiled gradient echo acquisitions were acquired (flip angles 6° and 20°, TE = 6.23 ms, TR = 15 ms, acq. matrix 80 x 128 x 128). To obtain ground-truth T1, a single voxel inversion recovery experiment with 25 inversion delays was acquired. Phantom scans were performed using a syringe filled with 5ml of tap water.

Figure 1 illustrates the numerical prediction of T1, with a nominal T1 value of 2000 ms for a wide range of B1 scales and resonance offsets. OC pulses (Fig. 1A) outperformed block pulses (Fig. 1B) in terms of T1 accuracy within the optimization target area, particularly for B1 scales deviating from the nominal value of 100%. Figure 1C further highlights the improved uniformity of OC pulses with respect to B1 scales for no off-resonance. In contrast, block pulses exhibit quadratic dependence on the B1 scale (fit not shown). Inversion recovery measurement of the phantom resulted in a nominal T1 of 1915 ms (not shown). The T1 predicition with VFA in phantom (Figure 2) demonstrates that block is more homogeneous within the entire phantom, but severely underestimates T1. In contrast, with OC we have a more accurate depiction of T1 compared to the nominal value. Table 1 summarizes the analysis of predicted T1 values based on simulation with the full Bloch equations within the optimization target area (red box in Figure 1). The minimum and maximum T1 values obtained with OC pulses are substantially closer to the nominal value than block pulses. The 90% range with OC pulses shows less than 15% deviation of the nominal value, while with block pulses this deviation exceeds 40%.

Optimal control excitation pulses with robustness to field imperfections were applied to variable flip angle T1 mapping. OC pulses enabled T1-prediction accuracy surpassing block RF pulses, in particular in the presence of B1 imperfections. With block pulses, the dependence on the B1 scale is quadratic. Prior methods introduced a quadratic correction term [9] that requires acquisition of an additional B1 map. However, the accuracy of the T1 map is then tied to the accuracy of the B1 map. In addition, this approach prolongs acquisition time. The proposed OC pulses do not require B1 maps within post-processing, reducing scan time and potential inaccuracies. The logical next step is applying optimal control excitation pulses for VFA T1 mapping in human in vivo MRI at 3T and 7T.

The advancement in VFA T1 mapping using optimal control excitation pulses reduces scan time since no additional B1 map is required, and it minimizes potential errors due to inaccuracies in the B1 maps and their correction.
Christina GRAF (Vancouver, Canada), Alexander JAFFRAY, Clemens DIWOKY, Armin RUND, Stefan STEINERBERGER, Alexander RAUSCHER
15:40 - 17:10 #46452 - PG438 Assessment of motion impact on non-parametrized dynamic pTx pulse performance at 7T.
PG438 Assessment of motion impact on non-parametrized dynamic pTx pulse performance at 7T.

Dynamic parallel transmission (pTx) has shown promise in mitigating flip angle (FA) nonuniformity, a major challenge at ultra-high field strengths due to severe B1+ inhomogeneity [1]. Recent developments now enable fast online customization (FOCUS) of dynamic pTx pulses by using low resolution B0 and multi-channel B1+ maps to optimize a subject-specific dynamic pulse [2]. This method yields more uniform FA distribution compared to static pTx [3] or universal pulses [4], but it adds additional acquisition time (approximately 1 min) prior to the scan. Because of this significant preparation time, the maps are typically acquired only once at the beginning of the session and then reused for the pTx pulse optimization of all sequences in the session. However, any subject motion occurring after the initial mapping can change the B0 and B1+ distribution, and, in turn, degrade pulse accuracy [5]. Building on our earlier evaluation of motion-induced effects on FA distributions using kT-point based pulses [6,7], here we extend the methodology to non-parametric dynamic pTx pulses recently introduced to enable FOCUS pTx in SPACE applications requiring variable high FAs [8]. By enforcing symmetric RF and anti-symmetric gradient shapes, this pulse can be scaled to a wide range of FA by varying the transmission voltage [9]. In this study, we aim to assess their performance when subject motion occurs after the acquisition of B₀ and B1⁺ maps. Furthermore, as rigid-body registration effectively approximates small motion-induced B0 changes [10], we explore the use of spatially registered maps from the original head position to the new position to re-optimize the pulse, thereby eliminating the need to re-acquire field maps.

Eleven healthy volunteers (5 females, age range = [24-41] y/o) were scanned at 7T (MAGNETOM Terra.X, Siemens Healthineers, Forchheim, Germany) using an 8Tx/32Rx RF head coil (Nova Medical, Wilmington, USA). A multi-echo GRE (res=4.0×4.0×6.0mm3, TEs=[2.39,4.59,7.09]ms, TR=10ms, TA=12s) and a pre-saturated TurboFLASH (res=4.0×4.0×5.0mm3, TR=3780ms, TA=45s) sequence were acquired at 15 different head positions to compute B0 and B1+ maps, respectively [11,12]. As described in Figure 1, three different pTx pulses were optimized for a target FA of 90° for each head position (i): 1. Motion: the first pulse was optimized on the maps acquired at the first position, representing the case where there has been a motion between two acquisitions but the field maps have not been re-acquired; 2. No motion: the second pulse was optimized on the maps acquired at position i, thus representing the case where there is no motion between the acquisition and the optimization; 3. Motion + registration: the last pulse was optimized with B0 and B1+ maps from the first position registered to position i. Resulting FA maps were then computed using Bloch simulations for the three pulses at each position [2]. FA map homogeneity was evaluated with the mean relative error (MRE) with respect to the target (flat 90° map) and pulses were compared pairwise using the Wilcoxon signed-rank test. Between the first position and all the others, the framewise displacement (FD) was computed to measure motion amplitude [13].

Example of resulting FA maps at one head position are shown in Figure 2. The “no motion” pulse results in a flatter FA map than the other two pulses. FA maps from the “motion” and “motion + registration” pulses exhibit similar FA distribution. Figure 3 shows the distribution of MRE for all subjects and positions. A significant difference was found between the MRE of the “no motion” pulses and both the “motion” and “motion + registration” pulses (p<1×10-24) with a median MRE increase of 0.72% and 0.85%, respectively. Figure 4 presents the MRE of the “motion” pulses against the FD. A significant positive correlation (ρ=0.53, p=1.5e-12) was observed between the MRE and the FD. However, most points are clustered by subject and the correlation is not consistent in individual subjects. When tested separately, only 2 subjects out of 11 showed significant correlation (after Bonferroni correction for multiple comparisons) between MRE and FD.

This work demonstrates that non-parametrized pTx pulses optimized using the FOCUS framework exhibit robustness to motion in the range we measured (FD < 27.6mm). The resulting median increase in MRE when not accounting for motion was only 0.72% over the whole brain, much smaller than the MRE of the pulses themselves compared to the target 90°. Results suggest that the motion-induced increase in FA map inhomogeneity is not correlated with the amplitude of the movement but appears to be subject-dependent. Finally, registering the maps to the new head position yielded no improvement over the “no motion” pulses.

These results indicate that FOCUS-optimized pTx pulses can maintain acceptable FA homogeneity in presence of motion, supporting their practical application in real-time or motion-prone settings.
Jocelyn PHILIPPE (Lausanne, Switzerland), Natalia PATO MONTEMAYOR, Antoine KLAUSER, Emilie SLEIGHT, Patrick LIEBIG, Jürgen HERRLER, Robin HEIDEMANN, Jean-Philippe THIRAN, Tom HILBERT, Gian Franco PIREDDA, Thomas YU
15:40 - 17:10 #47820 - PG439 A study of the effect of chemical shift displacement artifact on Quantitative Susceptibility Mapping in the breast.
PG439 A study of the effect of chemical shift displacement artifact on Quantitative Susceptibility Mapping in the breast.

Breast cancer is a leading cause of death in women worldwide[1]. A common marker of malignancy is breast calcifications[2] detected by X-ray mammography, a procedure that involves ionizing radiation and has low sensitivity in dense breasts[3]. Breast MRI allows microcalcifications to be identified in gradient echo (GRE) phase data and Quantitative Susceptibility Mapping (QSM). It has also shown high sensitivity to the diamagnetic properties of microcalcifications[4,5], flagging a potential role in their identification. QSM estimates tissue magnetic susceptibility from MR image phase[6]. While it offers excellent contrast in brain imaging, breast QSM faces additional challenges due to fat. The different resonance frequencies of water and fat cause chemical shift artifacts (CSA), including fat displacement at low bandwidths (type-1 CSA) and phase cancellation in GRE acquisitions (type-2 CSA)[7]. Strategies to address these effects include effective in-phase acquisitions (EIP)[8] and Simultaneous Multiple Resonance Frequency (SMURF) imaging[9]. EIP acquisitions use corrected TEs based on the 6-peak fat model to reduce type-2 CSA. SMURF uses multiband pulses to excite water and fat separately but simultaneously, enabling correction of both CSA types before recombining signals. These corrections are especially valuable at low bandwidths, where SNR is higher but type-1 CSA is more severe. In this work we evaluated the effects of type-1 CSA on QSM estimations in breast imaging. To do so, we used as ground truth QSM maps of the breast obtained from SMURF reconstructions (i.e, no displacement CSA), and compared them with QSM estimations obtained with effective echo time imaging over a wide range of bandwidths.

We acquired two coronal 3D monopolar mGRE sets from a healthy female volunteer on a 3T scanner (Siemens PRISMA) using the 28-channel BraCoil array[10]. The first dataset was acquired using effective in-phase time-interleaved echoes, using the bone marrow model TEs[8]. Acquisition parameters were: matrix size=432x208x160, resolution=0.9x0.9x1.2mm, TE={2.38,4.59,6.81,9.17}ms, TR=9.6ms, rBW/px=500Hz/px, flip angle=10°. The second dataset was acquired using SMURF imaging, with RL phase-encoding direction. Acquisition parameters were: matrix size=360x208x160, resolution=0.9x0.9x1.2mm, TE={4.96,12}ms, TR=24ms, rBW/px=400Hz/px, flip angle =10°. To quantify the effects of type-1 CSA, we corrected the 400 Hz bandwidth fat displacement on SMURF data and re-shifted the fat images simulating 200, 400, 800, 1200, and 1600Hz/px acquisitions. Then, type-2 CSA and T1 corrections were applied to the different SMURF images. Both EIP and SMURF datasets were pre-processed using ROMEO[11] unwrapping and PDF[12] background field removal. QSM maps were estimated using FANSI[13]. Reconstruction scores were computed using normalized RMSE and XSIM[14], using the fully-corrected SMURF acquisition as ground truth.

Figure 2 shows the images resulting from EIP and SMURF acquisitions. In both cases, fat displacement artifacts of 0.86 px and 1.08 px are present due to the respective 500 and 400 Hz/px receiver bandwidth of EIP and SMURF. Figure 3 shows the simulated fat displacements after applying Type-2 CSA, T1–bias corrections and coil combination. At high bandwidths (e.g., 1200–1600 Hz/px), Type-1 CSA effects are minimized and images resemble the reference. Low bandwidths show 1-2 px fat shifts, seen as signal voids in ROIs. Figure 4 shows QSM reconstructions and their differences from the fully corrected SMURF images. As fat displacements decrease, streaking artifacts are reduced and XSIM improves, with slower gains beyond 1000 Hz/px. At 200 Hz/px, strong streaking appears near mammary glands due to signal voids.

Fat displacement artifacts depend strongly on receiver bandwidth. While EIP cannot correct them without increasing bandwidth, SMURF enables mitigation through Type-1/2 CSA and T1–bias correction. As bandwidth increases, fat shifts decrease, resulting in more accurate images and improved similarity to the reference. In contrast, low bandwidths lead to 1-2px signal voids in fat-rich regions, degrading image quality. QSM difference maps confirm that reducing displacement improves XSIM metrics, although XSIM improvements become less pronounced above 1000 Hz/px. At very low bandwidths, unrecoverable signal loss causes severe streaking artifacts, particularly around the mammary glands.

We simulated and quantified the effect of the fat displacement artifact on breast QSM at different receiver bandwidths. Our results show that the signal voids at bandwidths under 800 Hz/px can severely impact susceptibility estimations if not corrected, especially in high tissue variability regions. This consideration is particularly relevant for approaches like in-phase acquisitions, which are not able to correct the type-1 CSA.
Javier SILVA (Chile, Chile), Beata BACHRATA, Carlos MILOVIC, Simon Daniel ROBINSON, Cristian TEJOS
15:40 - 17:10 #47946 - PG440 Explaining motion artefacts in 3D neuroimaging MRI using motion-sampling plots.
PG440 Explaining motion artefacts in 3D neuroimaging MRI using motion-sampling plots.

Motion during magnetic resonance imaging (MRI) is a well-known source of image artefacts, particularly in 3D, where data acquisition times are long1. Different portions of k-space are acquired at different time points, and if the subject moves the sampled data can represent different poses of the anatomy. This leads to inconsistencies across k-space that ultimately manifest as artefacts in the reconstructed image. However, many experimental studies investigating motion-induced artefacts define motion purely as a function of time2-4, with limited attention to how motion interacts with the k-space sampling trajectory. This can obscure understanding of why certain artefacts appear as they do. To address this, we propose the use of motion-sampling plots5—a method of visualizing the joint relationship between motion states and k-space locations during data acquisition. Motion-sampling plots offer a more intuitive understanding of how specific artefacts arise from specific combinations of motion and sampling. In this study, we demonstrate how motion-sampling plots can enhance the interpretation and communication of motion artefacts in both simulations and in-vivo experiments.

We conducted a series of simulations and in-vivo experiments to investigate the effects of head motion during 3D MRI acquisitions. Here we focus on nodding motion (i.e., rotation around the left–right axis) as a representative and commonly encountered type of rigid-body movement in neuroimaging. We analyzed how this motion interacts with different sampling strategies: (1) Cartesian sampling, (2) stack-of-stars sampling, and (3) kooshball sampling. For each sampling method, we further considered both smooth and non-smooth view ordering to examine its effect on motion artefacts. Each motion trajectory was plotted in a motion-sampling space, which maps motion state against corresponding k-space location. The resulting artefacts in reconstructed images were categorized and linked to features visible in these plots. In addition, we analyzed five real motion trajectories recorded from patients during scanning and studied their impact across the various sampling strategies on healthy volunteers.

Our results demonstrate that the same set of motion states, when applied to different parts of k-space, can produce artefacts that differ markedly. This underscores the need to consider not just how much a subject moves, but during which part of the sampling the motion occurs (Figure 1). We identified and categorized distinct artefact types, each associated with specific motion-sampling features (Figure 2): 1. Superposition occurs when central k-space is sampled in multiple motion states. 2. Ghosting results from stripy distributions in Cartesian sampling. 3. Noiselike artefacts appear when motion states are randomly scattered. 4a–b Ringing arises from discontinuities parallel to the imaging plane (Cartesian) or conical wedges in k-space parallel to the imaging plane (Kooshball). 5a–b Lines emerge from a central discontinuity in the imaging plane in both Cartesian and stack-of-stars sampling. 6. Streaking occurs with distinct wedges in the imaging plane (radial schemes). 7. Edge wobbles reflect smooth pose drift across k-space. We also observed increased artefact severity with greater motion amplitudes, including features suggestive of potential secondary effects such as motion-induced B0 shifts (Figure 3). In real patient motion trajectories, we observed that the same movement patterns yielded dramatically different image artefacts depending on the sampling scheme, and these differences were interpretable through motion-sampling plots (Figure 4).

This study is focused on rigid-body nodding motion, which represents a simplified yet relevant subset of head motion. While this limits generalizability to more complex motion types, we see similarities in artefacts and motion-sampling interactions in the real world motion cases. Our findings suggest that many commonly observed motion artefacts can be traced back to identifiable motion-sampling interactions. This framework offers a more k-space-centric perspective that can better explain image degradation in moving subjects.

We have shown that the relationship between motion and sampling trajectory—captured via motion-sampling plots—is critical when describing and interpreting motion artefacts in 3D MRI. By accounting for where in k-space motion occurs, motion-sampling plots offer insight into the mechanisms of artefact formation, reveal why certain motions cause more severe degradation, and explain variability across sampling strategies. This approach enhances reproducibility and clarity in motion studies and has the potential to guide both future research and practical acquisition design. Ultimately, to improve motion robustness in MRI, it is essential not only to quantify motion but to understand how motion and sampling jointly shape the image.
Sophie SCHAUMAN (Stockholm, Sweden), Adam VAN NIEKERK, Henric RYDÉN, Ola NORBECK, Stefan SKARE
15:40 - 17:10 #46313 - PG441 Rapid and low-cost evaluation of shielded room effectiveness in clinical MRI with a software defined radio.
PG441 Rapid and low-cost evaluation of shielded room effectiveness in clinical MRI with a software defined radio.

In magnetic resonance imaging (MRI), images are produced from a tiny radiofrequency (RF) signal. To prevent this signal from being altered by RF interference, an RF shielding enclosure is required[1]. Typically, the RF enclosure is built before the MRI system is installed, and often many MRI system upgrades or replacements are carried out in the same shielding room. The ageing of shielding room components must therefore be taken into account. In particular, the sealing system of the doors, which are opened and closed several times an hour, is susceptible to damage. Long-term effectiveness must therefore be assured and measured periodically. A radio frequency signal RF1 generated at the frequency of interest is measured through the shielding at a value RF2, the shielding efficiency is expressed in dB as 20 log(RF1/RF2) representing the attenuation obtained by the shielding. These periodic measurements are costly because they are carried out by experts equipped with expensive control systems (RF generator and network analyser)[2]. The aim of the present study was to propose an experimental set-up consisting of an SDR device and software to measure the same RF MRI pulse sequence generated by the MRI both inside and outside the shielding room, enabling simple evaluation of shielding effectiveness.



To illustrate the method, a schematic representation is given in Fig. 1. First, a 40 mm diameter RF coil matched to 50 ohms with a very low quality factor to enable broadband reception is manufactured. This receiver coil is placed at various positions along the walls inside the shielding room, then the same measurements are made at the corresponding positions outside the room (Fig. 2). This coil is connected to the input of an SDR dongle (Nooelec, USA) via fixed-value RF attenuators (Mini-Circuits, USA) to take account of the huge variations expected in signal amplitude between outdoor and indoor measurements. This dongle is plugged into a computer's USB port, and the open source CUBICSDR software (https://cubicsdr.com/) is played on the computer. The SDR frequency is set to MR frequency and In-Phase and Quadrature (I/Q) mode is selected with a receive bandwidth of 192 kHz. Frequency and time windows allow to view signals and adjust both the SDR tuner gain and/or the fixed attenuators. The demodulated signal is recorded in a wav file at the frequency of the receiving bandwidth. The wav file is then decoded using an in-house developed Mathematica (Wolfram Research, Inc., USA) script. This script provides temporal and frequency displays of selected parts of the sequence of interest (Fig. 3). This script enables precise measurement of the durations, relative amplitudes, and frequencies of recorded pulses[3]. To illustrate the capabilities of the set-up, three shielding room were evaluated, two enclosing a 1.5 T clinical MRI at 63.64 MHz (Magnetom Sola, Siemens Healthineers, Germany) and the third a 3T systems (Magnetom Vida, Siemens Healthineers, Germany). 2D gradient echo sequences were played repeatedly on the systems and measured at different positions (Fig. 2). An additional measurement was made for both two systems with the door slightly open, to check the validity of the method.



The Table 1 shows the measured values of the signal attenuation (in dB) by the shielding rooms. Shielded Room 3 has recently been renovated with a brand-new door, unlike the other two which have been in place for several years. We observe that the attenuation of this room is higher (85 dB) than the two older shields, which is consistent, as shields degrade over time, mainly caused by door aging. Furthermore, when the door is slightly open, the attenuation is lower than when it is closed, indicating, as expected, a greater RF leakage.



All this Results therefore confirms the reliability of the method. The low-cost method we propose works at both low and high fields, and could therefore be used for inexpensive control of isolation in many MRI systems. However, this method cannot be used to certify an RF shield, as the IEEE 299-2006 « Standard Method for Measuring the Effectiveness of Electromagnetic Shielding Enclosures » is not precisely followed.



We designed an experimental setup consisting of a home-made broadband RF coil connected to a software-defined radio (SDR) to measure the same pulse sequence produced by the MRI, both inside and outside the shielding room, allowing direct assessment of shielding effectiveness. This simple, low-cost method can be used for periodic checking of the room efficiency without the need for an expert and his complex equipment (RF generator and network analyser).


Kouame Ferdinand KOUAKOU (Angers), Anita PAISANT, Vanessa BRUN, Christophe AUBE, Hervé SAINT-JALMES
15:40 - 17:10 #47876 - PG442 Linewidth Analysis of MR Spectrum in AI-Based Dynamic Shimming in the Presence of Motion.
PG442 Linewidth Analysis of MR Spectrum in AI-Based Dynamic Shimming in the Presence of Motion.

For high-quality MR imaging, it is essential that the main magnetic field (B₀) remains homogeneous throughout the acquisition[1]. Inhomogeneities in the B₀ field impact magnetic resonance spectroscopy (MRS) by causing spectral line broadening[2]. Shimming with spherical harmonics (SPH) coils is the primary approach to cancel these inhomogeneities[3]. An array of circular AC/DC coils provides superior shimming performance compared to the conventional spherical harmonics (SPH) coils integrated into the MR scanner[4]. Conventional static shimming applies B₀ correction only before the scan, whereas dynamic shimming continuously updates B₀ throughout the scan[5]. shimming updates are often based on the initial GRE B₀ pre-scan, or they measure B0 changes continuously[6]. Nevertheless, reliably measuring these B₀ changes remains a challenging task. Volumetric navigators, interleaved with the primary acquisition, provide a means to dynamically track B₀ changes throughout the scan[7], [8]. They increase the overall scan time if the primary sequence lacks adequate dead time[9]. Motyka et al. proposed a deep learning (DL) based method for predicting motion-induced B₀ inhomogeneities, which has shown comparable results to that of EPI-based dynamic shimming[10]. Linewidth measuring through full width at half maximum (FWHM), are commonly used to assess MRS quality[11]. In this study, we assess the effects of motion-related B₀ inhomogeneities on a simulated water FID signal. We then evaluated the FWHM of its Fourier-transformed frequency spectrum under various shimming conditions (static vs. dynamic) and across two coil configurations: (i) SPH and (ii) SPH+AC/DC.

This study uses a dataset from Motyka et al., involving 15 healthy volunteers scanned using a 7T Magnetom+ MR scanner (Siemens Healthineers, Erlangen, Germany)[10]. For each subject, multi-echo B₀ maps were acquired using 2D GRE and 3D EPI sequences at 30 randomly selected head positions (1 initial and 29 after-motion). Additionally, Anatomical MP2RAGE images were acquired at the initial position and then transformed to the other positions using transformation matrices generated from the co-registration of the 2D GRE magnitude images[10]. To generate a semi-synthetic dataset shimmed with SPH and AC/DC coils in static mode, the original dataset was shimmed with 31-channel AC/DC coil fields in two regimes: (i): Whole-brain (ii): Slice-specific (Figure 1). A DL neural network based on U-Net with subject-specific fine-tuning was trained using the Static-SPH+AC/DC dataset in two regimes: (i): Whole-brain (ii): Slice-wise. The network inputs included anatomical images at both the initial and after-motion positions, as well as the B₀ field maps at the initial position, with the goal of predicting B₀ maps at the after-motion positions. Training was carried out on data from 11 participants across 30 head positions. For evaluation, data from the rest 4 participants were used, where the first 6 after-motion positions were reserved for subject-specific fine-tuning and the remaining 23 positions for testing. Dynamic shimming with SPH+AC/DC coils was simulated by calculating shim field maps for each after-motion position, based on DL-predicted and measured GRE and EPI based B₀ field maps, and subtracting them from the B₀ maps of corresponded positions (Figure 1). To evaluate the efficiency of DL-based dynamic shimming on MRS, we simulated the FID signal of water and applied B₀ inhomogeneities. The FWHM of the Fourier-transformed spectrum at each voxel was calculated. Finally, the mean and standard deviation (STD) of the FWHM across all voxels for each shimming method were computed, along with the percentage of inappropriate voxels (FWHM > 0.1 ppm)[11]. A post-hoc test was then conducted on all results.

AC/DC coils helped to make the magnetic field more homogeneous when the subject was still, but movement reduced this. However, dynamic shimming preserves the homogeneity (Figure 2). For the DL-based dynamic shimming method, STD of FWHM measurements is significantly lower than that of the EPI-based method, while the mean shows similar results (Figure 3). The percentage of inappropriate voxels didn’t show any significant difference between DL-based dynamic shimming and those with GRE and EPI based methods (Figure 4).

Although AC/DC coils improve initial B0 homogeneity, motion degrades it, highlighting the need for dynamic shimming. The proposed DL-based method matches GRE and EPI dynamic shimming and may replace volumetric navigators by enabling rapid, high-resolution shim updates. This simulation study demonstrates the potential of DL networks for real-time shimming in the future.

This study assessed the FWHM of simulated FID signal of water with applied motion-related inhomogeneities under different static and dynamic shimming using additional AC/DC shim coils. DL-based dynamic shimming performed similarly to GRE and EPI based approaches, but with no added scan time.
Mohammad KHOSRAVI (Klagenfurt, Austria), Wolfgang BOGNER, Bernhard STRASSER, Jason STOCKMANN, Günther GRABNER, Beata BACHRATA, Stanislav MOTYKA
15:40 - 17:10 #47900 - PG443 3d radial 4d flow mri in a cardiorespiratory motion flow phantom with eddy current artifact correction.
PG443 3d radial 4d flow mri in a cardiorespiratory motion flow phantom with eddy current artifact correction.

4D flow MRI is a technique that provides measurement of blood flow in three spatial dimensions over time, allowing for detection of abnormalities in the cardiovascular system [1]. However, due to the four-fold increase of required readouts compared to anatomical scan sequences, a compromise must be made between scanning times and imaging artifacts caused by undersampling. 3D radial k-space trajectories sample the center of k-space at every repetition, providing less sensitivity to motion and undersampling artifacts compared to Cartesian strategies [2]. However, due to rapid switching of gradients, eddy current artifacts such as gradient delays and B0 phase errors must be addressed [3]. This work presents the investigation of two 3D radial trajectories for 4D flow MRI with eddy current artifact correction in a pulsatile flow phantom with cardiorespiratory motion.

Two 3D radial trajectories (shown in figure 1) were adapted from literature and further developed for application on a 3T Philips MR7700 scanner: Golden means (GM), where the two-dimensional golden ratios ϕ_1=0.4656 and ϕ_2=0.6823 are used to calculate the azimuthal and polar angles of each 3D radial spoke [4]. Spiral phyllotaxis (SP), with successive readout spokes spiraling down in an interleaved fashion. Each interleaf is rotated by the golden angle of 137.5° from the preceding one [5]. Data acquisition was performed on a pulsatile flow phantom mimicking both aortic and respiratory motion (LifeTec Group, Eindhoven, The Netherlands). The moving phantom was programmed to pump water through a flexible tube with downstream resistance at a fixed rate of 60 bpm, while mimicking respiratory motion in the head-foot direction at a fixed rate of 10 bpm (shown in figure 2). 4D flow measurements were conducted for both radial trajectories with the following scan parameters: TR/TE = 4.08/1.66 ms, α = 4.5°, venc = 100 cm/s, FOV = 256mm, isotropic resolution = (1.33 mm)3, acquisition time ≈ 10 min, number of readout spokes ≈ 36,600. One scan was acquired per trajectory. Image reconstruction was performed in Matlab (R2022b; MathWorks) using a parallel-imaging and compressed-sensing algorithm, which provided NUFFT gridding and density compensation [6]. The reconstruction algorithm was combined with retrospective binning to reconstruct end-expiration 4D flow images with 10 cardiac phases. To measure and correct eddy current-induced artifacts, separate 15-second calibration GRE scans with no motion were performed with the same scan parameters and parts of the trajectory as the 4D flow measurements. These datasets were used to calculate gradient delays using a RING method from BART [5] and to correct B0 phase errors with an adapted 3D version of a previous method [3], using to the following equation: ϕ_ec (ϕ,θ)=ψ_x G_x cos⁡(ϕ) sin⁡(θ)+ψ_y G_y sin⁡(ϕ) sin⁡(θ)+ψ_z G_z cos⁡(θ)+ϕ_0 Here, ϕ_ec is the accumulated B0 phase error as a result of the azimuthal (ϕ) and polar (θ) angle of the readout spokes and gradient strengths G. The phase errors per gradient strength ψ and the constant phase offset ϕ_0 were fitted for each coil using a non-linear least squares fit. The fits were applied to the 4D flow datasets as a phase shift to the raw k-space data. Only coils with a good fit (R^2≥0.8) were used for reconstruction, after further compressing the coils down to 8 virtual channels to reduce the computational burden.

Gradient delay trajectory compensation was found to be minimal in all directions for both trajectories, with the largest compensation being 0.45 voxels in the AP-direction at an isotropic k-space FOV of 130 voxels. After removing the constant phase offset ϕ_0, the root mean square of the B0 phase errors for the coils with a good fit were measured to be ϕ_ec= 22.3°±11.8° for the GM dataset, while these values were found to be ϕ_ec= 23.4°±12.3° for the SP trajectory. Figures 3 and 4 show 4D flow magnitude images of a single slice in one cardiac frame for the GM and SP trajectory, respectively. Both figures show images of the flexible tube without and with eddy current artifact correction, the latter of which were deemed sharper.

Both before and after gradient delay compensation and B0 phase error correction, the GM dataset produced visually sharper images than the SP dataset, indicating the value of spatiotemporally uniform k-space coverage for motion and undersampling robustness. The GM and SP trajectory showed comparable phase errors in the calibration data, suggesting that the B0 phase errors affected both images similarly. Additionally, visual image quality improved for both sequences after applying the corrections that were calculated using the calibration scans.

The use of a pulsatile flow phantom with cardiorespiratory motion allows for investigation of 3D radial trajectories for 4D flow MRI and the effects of eddy current artifact correction. Further exploration into more radial sampling schemes could be beneficial for future clinical implementation.
Luc DE RUITER (Amsterdam, The Netherlands), Pim VAN OOIJ, Eric SCHRAUBEN
15:40 - 17:10 #47949 - PG444 Initial experiences with monitoring 3D multi-echo gradient echo sequences with a dynamic field camera.
PG444 Initial experiences with monitoring 3D multi-echo gradient echo sequences with a dynamic field camera.

Multi-echo gradient echo MRI sequences are used to acquire images which encode information about tissue properties such as susceptibility and T2* relaxation rate [1]. Measurement of these properties is of great interest in multiple-sclerosis, Alzheimer’s disease, and Parkinson’s disease, where they are promising candidates for quantitative biomarkers of disease progression. Significant progress has been made in quantitative susceptibility mapping (QSM), however application and validation of the technique in vivo remain a challenge [2-4]. Efforts to close the gap between QSM reconstruction algorithm performance in simulation and in vivo have primarily focused on furthering the understanding of microstructural and non-dipolar contributions to the local magnetic field to more completely describe the field-to-source inverse problem at the core of QSM. In contrast, limited work has been done to improve the fidelity of the phase of multi-echo gradient echo imaging data and to understand its influence on QSM accuracy. The use of an expanded encoding model and dynamic field monitoring system may provide an avenue for improving the fidelity of phase data in multi-echo gradient echo imaging [5]. This work describes an initial measurement of higher-order field dynamics during the echo train of a 5-echo multi-echo gradient echo sequence, for both monopolar and bipolar readout strategies.

A template 3D multi-echo gradient echo (meGRE) sequence was developed on a 3 T Philips MR7700 MRI system with the NG2250 XP gradient amplifier (Philips Koninklijke). The 3D non-flyback meGRE scan parameters were as follows: TR = 19 ms, TE1 = 3.4 ms, echo spacing = 1.8 ms, 1x1x4 mm resolution, FOV 230x183x124 mm. A 3D meGRE with flyback (TR = 25 ms, echo spacing = 3.5 ms), and a 2D meGRE without flyback (TR = 86 ms, TE1 = 6.5 ms, echo spacing = 1.7 ms) were also measured in the same session.All scans used a maximum gradient amplitude of 20 mT/m. A Skope dynamic field camera (DFC) was used to monitor a subset of the scan dynamics with a dynamic TR of 280 ms. The scanner software was modified using the Philips pulse programming environment (PPE) to implement changes in sequence timing required by the DFC, and synchronization triggers were added. A calibration sequence was implemented using the PPE. Data from the DFC was recorded using the Skope acquisition system and processed in Skope-fx. Further processing and filtering was performed in MATLAB. Higher order field coefficients were described using maximal phase excursion over a 10cm volume. First-order trajectory variations and resonance frequency drift were assessed, along with higher order field terms.

Measurement of spatiotemporal field dynamics for both 2D and 3D Cartesian meGRE acquisitions with and without flyback were demonstrated, validating our implementation of pulse sequence timing changes (see Figure 1). Drift in sampling position compared to the nominal sampling pattern was observed in the first order solid harmonic terms (Figure 2) of up to 15 rad/m. A consistent linear trend was seen in the zeroth order field term throughout the acquisitions, with transient behaviour in the first few seconds of measurement before stabilizing. The transition between transient and linear regimes could be modeled with a simple exponentially modulated linear fit ((1 - e^(-t/T))*(m*t + b), where T describes the time constant of the transient behaviour and m describes the drift in the B0 field with time (Figure 3). Field drifts of between 0.07 and 0.25 Hz per second were measured in the linear regime.

The presented work describes our initial experiences with measuring Cartesian meGRE sequences using a dynamic field monitoring system. Separation of the 3rd dimension phase encode gradient from the slab and slice selective rephasing gradients was accomplished without degrading sequence or image fidelity. Observed imperfections in the field dynamics were consistent in magnitude with those reported for echo-planar imaging, as expected. While the observations were consistent with previous work, this measurement is preliminary. Next steps within this work will comprise refinement of the measurement protocol, including optimization of the sequence timings and further investigation of the observed resonance frequency drift.

A modified version of a 3D multi-echo gradient echo sequence was developed on the Philips platform which was compatible with dynamic field monitoring, and initial measurement and characterization of system imperfections specific to multi-echo sequences was conducted.
Alexander JAFFRAY (Vancouver, Canada), Julian KLOIBER, Alexander RAUSCHER
15:40 - 17:10 #46513 - PG445 Exact motion simulation vs. retrospective application on static data.
PG445 Exact motion simulation vs. retrospective application on static data.

Calculating the effects of motion in MRI acquisitions is essential to develop more robust sequences, understand the resulting artifacts, and to generate training data for machine learning algorithms for their suppression. This is commonly done by retrospectively distorting the acquired image according to the replicated motion path. We suggest that this approach is physically implausible and can show large differences compared to an accurate simulation. This is because it ignores the complex magnetization dynamics during acquisition, which can influence motion artifacts.

An analytical, physically correct simulation based on Phase Distribution Graphs[1] was used as ground-truth. This simulation was recently extended by the capability of simulating motion[2]. Arbitrary movements during any MRI sequence can be simulated by deriving a closed-form expression for the motion induced phase shift of the magnetization. This phase is produced by the interaction between movement and a variable magnetic field gradient: ϕ(r_0,T) = ∫_0^T [r(r_0,t) ⋅ g(t) dt] where ϕ is the phase of a point in magnetization that started at position r_0, accumulated over the time period T, following the trajectory r(r_0,t) through a varying magnetic field with gradient g(t). By segmenting both the movement and the changing gradient field into linearized steps, a closed-form solution can be found: ϕ = r_0 k_0+1/2 r_0 Δk+1/2 Δrk_0+1/3 ΔrΔk In the simulation, this phase is calculated per-voxel for the provided motion paths. Furthermore, the phase of magnetization also reacts to refocusing through RF pulses, to their phase, as well as to B_0 inhomogeneities. While the simulation calculates the magnetization based on flip angles, relaxation times and more, the retrospective method works solely on a single image[3]: y=∑_(t=1)^T [M_t F U_t x] where the distorted image y is calculated as the sum of all sampled time points. For each point, M_t is the position of the k-space sample, F the Fourier transform, U_t the motion and x the undistorted image. Both approaches for calculating motion artifacts are compared for two MRI sequences, a TSE acquisition and a balanced SSFP measurement. The TSE sequence uses 120° refocusing pulses, gradient spoiling and has a repetition time of 5 ms. The bSSFP sequence uses 50° pulses with alternating phase and an α\/2 preparation pulse at a repetition time of 10 ms. Both are 2D sequences with a resolution of 64×64, the applied motion is a constant movement in horizontal direction of 5 cm over the duration of the acquisition.

Figure 1 displays the comparison of both approaches for the bSSFP sequence. The retrospective method applies motion artifacts directly to the first reconstruction, which stems from a simulation without motion. The result is very close to a full simulation that includes motion, as the difference images show. Figure 2 shows a similar comparison, this time for the TSE sequence. Here, large differences between the simplistic estimation and a full simulation can be seen. The simulation shows ghosting artifacts which are especially visible in the phase of the reconstructed but are completely missing from the retrospective method. The magnitude difference shows large deviations between both approaches, which are up to 30% of the maximum magnitude of the reconstructed images.

While the often-used retrospective approach to generating motion artifacts can indeed capture their overall shape, it can deviate strongly from a full simulation. The difference is stronger for a spoiled sequence. In balanced sequences, the overall phase of the magnetization is set to zero and the motion induced phase shift does not accumulate as strongly. In the TSE sequence however, the interaction between motion and refocusing pulses must be considered for an accurate description of motion artifacts. This is only done in a simulation but not in a retrospective method which only considers an acquired image but not the magnetization dynamics during acquisition. Similar differences could be expected for sequences with strong transient state effects, where the contrast changes during acquisition. Here, the retrospective method could fail in similar ways as this change is missing from the measured signal and requires a simulation to be considered in motion artifact calculations.

We propose that the often-used retrospective approach of calculating motion artifacts is insufficient to describe these effects correctly. Machine learning or development of robust sequences could lead to subpar results if the underlying mechanics are not described correctly, as is evident by the partly large differences in reconstructed images. Full simulations should be used if possible.
Jonathan ENDRES (Erlangen, Germany), Moritz ZAISS, Simon WEINMÜLLER
15:40 - 17:10 #47650 - PG446 Recycling field maps: B0 distortion correction using shim calibration scans.
PG446 Recycling field maps: B0 distortion correction using shim calibration scans.

Echo-planar imaging (EPI) [1] is the most common readout strategy for fast MR imaging. It is used in applications such as Diffusion weighted imaging (DWI), BOLD fMRI and ASL. The advantages that it provides in terms of speed come along with an increased sensitivity to field inhomogeneities, arising primarily from susceptibility differences between tissues, which result in image distortions. This effect is stronger for higher background fields and longer readout trains, e.g. in single-shot EPI. Shimming is a widespread means of mitigating such distortions by counteracting field inhomogeneities through the use of additional hardware. It requires a calibration measurement at the beginning of the scan session. For an accurate shimming procedure, this comprises a field map measurement in the region of interest. Spherical harmonic basis functions are fitted to the field distribution, which can then be realized by actuating the respective shim coils. Residual distortions remain due to limited capabilities of the shim hardware. These can be addressed by incorporating additional information on the expected distortions in the image reconstruction. Various strategies have been deployed to this end [2–5], among which the most basic method is to acquire another field map, from which a displacement map can be computed, which is then used to unwarp the EPI [6]. In the described imaging procedure, two field maps must be acquired, one for the initial shimming and another one (with modified shim conditions) for the retrospective distortion correction. In this work, we perform both corrections using only one map. This is done by calculating the effect that the difference in shim values has on the field distribution and thereby estimating a new map under the modified shim condition.

Theory: The field distribution (F) produced by a certain shim state (current vector s of length N_c = #shim coils) at pixel position x can be expressed as shown in Equation 1 (Figure 1), where k counts through the N_sh spherical harmonic basis functions y_k(x). To convert a field map B_A(x) that has been measured under an initial shim state A, to another shim state C, the difference in field distribution must be added to it (Equation 2 in Figure 1). The converted field map is used to compute a displacement map. The un-warping of the EPI images is performed using linear interpolation to the thus distorted coordinates [6]. Experiments: Experiments were performed on a preclinical 7T small animal scanner (Bruker BioSpec 30/70, Bruker BioSpin GmbH & Co. KG, Ettlingen, Germany), using a transmit volume coil and a 2x2 surface receive array. Measurements were performed using a cylindrical water phantom (MRI PHAN 1H IM M.HEAD, model no. 1P T9660, same vendor) and a naturally deceased mouse. Field maps were computed from 3D double-echo spin-warp scans. 2D multi-slice single-shot Echo-planar imaging (EPI) was performed using the parameters displayed in the table in Figure 2. Initial shimming was performed using an FID-based method which only actuates 1st order shims. Subsequently, a field map was acquired and used to optimize the field homogeneity including higher-order shims (here, up to 2nd order and Z^3). In this new shim state, another field map and the EPIs were acquired. T2 weighted RARE [7] scans were acquired as geometric reference.

See Figures 3 and 4.

The "recycling" of field maps for B0 distortion correction, presented here, proves to be an effective and timesaving means of image enhancement. There are three potential limitations to the efficacy of the method: 1) The reliability of the method depends on the accuracy of the shim field approximation with a given set of basis functions (here spherical harmonics). If this approximation does not hold, for example, if there were non-linearities with respect to the shim currents that were disregarded in the model, the converted field map would not be valid. However, this behaviour could not be observed in the current study. 2) Since typical shim coils can only be used to produce spatially slowly varying field distributions, usually low-resolution field maps are used for their calibration. However high-resolution field maps might be beneficial for accurate distortion correction. In applications where multiple regions of interest are studied, using only one initial shim calibration, the workflow proposed here might not be the best option, but instead acquiring one low-resolution field map in the beginning and region-specific high-resolution maps for distortion correction so that the proposed conversion would not be strictly necessary (e.g. in Figure 4, if the eyes were the region of interest). 3) In regions where strong field changes lead to dephasing in the spin-warp scan, no reliable field map information can be obtained. In this situation, acquiring a second map under the new shim conditions, where the strong field changes are mitigated, might be conducive to the distortion correction.
Maria ENGEL (Ettlingen, Germany), Martin HAAS, Michael HERBST, Sascha KÖHLER, Christian MEIER, Markus WICK
15:40 - 17:10 #47568 - PG447 Field Inhomogeneity Correction for 2D Single-Shot Lissajous Trajectories.
PG447 Field Inhomogeneity Correction for 2D Single-Shot Lissajous Trajectories.

Single-shot 2D Lissajous trajectories enable full k-space sampling using two widely spaced echo times within a single RF excitation [1]. Fast regridding can be achieved with the Uniform Resampling (URS) algorithm [2], which employs only two matrix multiplications using matrices similar in size to the reconstructed image. However, as the readouts for both echoes are spread across the entire acquisition window, as illustrated in Figure 1, these trajectories are susceptible to off-resonance artefacts, such as blurring and geometric distortion. Fortunately, rapid regridding enables the application of off-resonance correction methods, as described in [3]. In this work, we implement the time-segmented off-resonance correction from [3] and its iterative counterpart [4] for the reconstruction of 2D Lissajous trajectories and compare them using simulations, phantom and in vivo measurements.

To evaluate the performance of the off-resonance correction, a fully sampled, single-shot 2D Lissajous sequence (0.24 cm² FOV, matrix size: 96x96, TE: [8.7ms, 108.9ms]) was implemented using PULSEQ [5] The total readout duration was 113.6 ms, including two navigator lines at the beginning for gradient delay correction. The readout started 4ms after RF-excitation. Simulations were performed with MRZero [6]. Phantom and in vivo measurements were acquired on a 3T Siemens Magnetom Prisma system. B₀ field maps and coil sensitivity profiles were estimated using a dual-echo GRE acquisition with echo times of 4.92 ms and 7.38 ms. The B0 field maps were calculated from the phase differences of the two echoes. Coil sensitivity maps were estimated using the ESPIRiT algorithm from the BART toolbox [7, 8].

Thirty time segments were used to reconstruct the simulations. The simulated field map ranged from –11 Hz to 45 Hz. As shown in Figure 2, the uncorrected images exhibit distortions and blurring (indicated by red arrows). The off-resonance correction eliminates most of the artefacts. However, residual artefacts are still visible in areas with strong field fluctuations. Overall, the CG-SENSE reconstruction with off-resonance correction provided sharper images with less blurring than the faster URS reconstruction for both echoes. Testing up to 100 time segments did not result in a reconstruction with fewer residual artefacts. In the phantom measurements, 16 time segments were sufficient to correct nearly all distortions. Nevertheless, some off-resonance artefacts remained in the second echo. The corresponding field map ranged from –19 Hz to 14 Hz. In in vivo data, neither the time-segmented URS nor the CG-SENSE-based method could fully correct for signal dropout or strong distortions due to B₀ inhomogeneity (field map range: –18 Hz to 150 Hz). Still, both correction methods reduced image blurring and improved grey-to-white matter contrast. The images from the reconstruction using 35 time segments are shown in Figure 4. Increasing the number of time segments to 100 did not improve the reconstruction quality.

For moderate B₀ inhomogeneities, time-segmented URS and the time-segmented CG-SENSE reconstruction can effectively reduce blurring and distortion in Lissajous measurements. However, for larger field deviations – especially in in vivo measurements – the effectiveness of these corrections is limited. With the current spatial resolution of 2.5 mm, the readout time of 113 ms may be too long for complete correction of such artefacts. Due to the nested acquisition of echo times, 2D Lissajous trajectories are also particularly sensitive to B₀-related effects. Furthermore, intra-voxel dephasing can increase the signal loss for the large voxel size of the sequence used in this work [9].

The time-segmented off-resonance correction methods used in this work can compensate for most artefacts in simulated data and phantom measurements of 2D Lissajous trajectories. However, significant artefacts remain in in vivo images in regions with strong field inhomogeneities. Further improvements could be achieved by combining these corrections with trajectory undersampling and/or multishot methods that reduce the overall readout duration and/or permit smaller voxel sizes.
Felix LANDMEYER (Jülich, Germany), Markus ZIMMERMANN, Fabian KÜPPERS, Seonyeong SHIN, N. Jon SHAH
15:40 - 17:10 #47793 - PG448 End-to-End Pipeline for GIRF Correction of Pulse Sequences in Julia.
PG448 End-to-End Pipeline for GIRF Correction of Pulse Sequences in Julia.

Magnetic resonance imaging (MRI) relies on precise control and knowledge of magnetic field gradients to produce high-quality images. Gradient imperfections can lead to artifacts that compromise image accuracy, particularly in quantitative MRI applications where exact knowledge of the gradients is crucial. Gradient impulse response functions (GIRFs) provide a robust approach to characterizing and correcting these imperfections by modeling the gradient system's dynamic response to input signals [1]. In this work, we introduce a computational pipeline developed in the Julia programming language for computing and applying GIRFs based on magnetic field measurements. This pipeline builds on and extends existing implementations [2] by integrating GIRF corrections directly into MRI sequences stored in Philips GVE files. It offers an efficient alternative to MATLAB-based implementations while maintaining compatibility with the Julia ecosystem. Importantly, our pipeline extends GIRF computation beyond first-order field measurements to include second- and third-order solid harmonic terms, allowing for a more comprehensive correction of gradient-related artifacts.

The computational pipeline was implemented in Julia, chosen for its high performance, intuitive syntax, and modular design. Julia’s support for efficient multi-threading and extensive package library makes it well-suited for computationally intensive tasks. The pipeline utilizes the GVE.jl module for loading Philips GVE files and extracting the gradient waveforms and sequence timing information [3]. The waveforms are interpolated to match the scanner’s dwell time. GIRFs are computed based on field measurements using frequency-domain division, following the process described by Vannesjo et al. [1]. Alternatively, externally provided GIRFs can be imported. The GIRF correction step involves transforming the input gradients into the frequency domain, followed by a multiplication with the GIRF in frequency domain and subsequently performing an inverse Fourier transform to obtain the corrected gradient waveforms in the time domain. To maintain precision, both the input gradients and the GIRF are interpolated in the frequency domain to match the bandwidth of the gradient system. To demonstrate the usage of our proposed pipeline, the GIRF was computed from 12 triangular gradient waveforms with varying strengths measured on a Philips MR7700 3T system with the NG2250 XP gradient system. Magnetic field measurements were acquired using a dynamic field camera consisting of 16 spatially distributed NMR probes, enabling the representation of the magnetic field as a solid harmonic expansion up to third order [4]. These high-order terms allow the pipeline to correct for spatially varying gradient imperfections.

The Julia-based pipeline efficiently loaded and processed Philips GVE files and applied GIRF corrections to gradient waveforms with minimal computational effort. Corrected gradients exhibited temporal evolution consistent with the low-pass filtering effects of the GIRF. For evaluation, GIRF corrections were applied to a diffusion-weighted imaging sequence. Figure 1 shows the computed first-order GIRF and demonstrates the low-pass behaviour. Figure 2 illustrates the corrections in gradient waveforms for a selected time interval within the sequence. The computational efficiency of the pipeline underscores Julia’s suitability for high-performance MRI simulations and reconstruction tasks.

The proposed Julia-based pipeline is an advancement in integrating GIRF corrections into MRI simulation and reconstruction projects. Its direct compatibility with Philips GVE files eliminates the need for intermediate file conversions, streamlining data processing and reducing potential sources of error. This direct integration not only simplifies the pipeline but also ensures the fidelity of the input data. The inclusion of higher-order solid harmonic terms extends the GIRF framework, allowing for precise correction of spatially complex gradient imperfections. Julia's modular architecture ensures that the pipeline can be easily extended to include additional functionalities, such as integration with MRIReco.jl for reconstruction workflows or KomaMRI.jl and others for simulation [5-6].

We developed an efficient Julia-based pipeline for computing and applying GIRF corrections to Philips GVE MRI sequences. By incorporating gradient field measurements up to third-order solid harmonics, the pipeline streamlines characterization of gradient imperfections and enables precise corrections. This improves the fidelity of gradient waveforms, leading to higher-quality image reconstructions.
Julian KLOIBER (Vancouver, Canada), Alexander JAFFRAY, Alexander RAUSCHER
15:40 - 17:10 #47936 - PG449 Tissue Boundary Artifact Reduction Performances of Helmholtz-MREPT and cr-MREPT.
PG449 Tissue Boundary Artifact Reduction Performances of Helmholtz-MREPT and cr-MREPT.

Magnetic Resonance Electrical Property Tomography (MREPT) is a non-invasive reconstruction technique for imaging tissue electrical properties from MRI data. In this study, two widely used approaches, the Helmholtz-equation based (Helmholtz-MREPT) and the convection–reaction-equation based (cr-MREPT) methods, are compared in terms of artifacts at tissue boundaries, using both simulated and experimental phantoms.

In Helmholtz-MREPT approach, based on the local homogeneity assumption, conductivity is computed, pixel-wise using the equation in Figure 1.a. Direct calculation of the phase Laplacian is extremely noise‐sensitive. Thus, a local weighted parabolic‐curve fit is applied within a 3D kernel. These weights are computed according to a Gaussian function of the MR magnitude difference between each kernel point and the local center as shown in Figure 1.b. The standard deviation, s, is taken as 0.45. Following reconstruction of the conductivity maps, a weighted median filter is applied to further enhance the performance near boundaries. The second method, cr‐MREPT, solves a convection–reaction PDE simultaneously across the entire grid, without relying on MR magnitude or local homogeneity assumptions. The convection-reaction PDE equation is shown in Figure 1.c. The equation is discretized on either a Cartesian grid or a triangular mesh via the finite‐element method and solved for resistivity. Conductivity is then derived as the reciprocal of the computed resistivity. A small diffusion parameter (c=0.005) regularizes the solution to prevent abrupt changes. The described algorithms are evaluated on both digital and physical (real) phantoms. Three digital phantoms with different conductivities were simulated in COMSOL at 128 MHz. Phantom-1 has four anomalies with conductivities 0.75–1.25 S/m against a 0.5 S/m background, whereas Phantom-2 and Phantom-3 have small anomalies with 1 S/m conductivity with the same background. Since boundary artifacts obscure especially small repetitive objects, Phantom-3 is generated which contains much smaller anomalies compared to Phantom-2, with diameters of 0.3–0.6 cm. Both the noise-free and noisy versions of Phantom-3 were evaluated. Phantom-4, an experimental agar‐gel (20 g/L Agar, 2 g/L NaCl, 0.2 g/L CuSO4) phantom with 4.5 mm and 7 mm salt‐water anomalies (6 g/L NaCl, 0.2 g/L CuSO4) are scanned at 3 T using a bSSFP sequence (FA=40°, TE/TR=2.35/4.7 ms, 1.56 mm isotropic, NEX=32) at Bilkent University UMRAM. All algorithms are implemented in MATLAB.

In Helmholtz-MREPT reconstructions, boundary artifacts are nearly eliminated around the anomalies larger than 1 cm in Phantom-1 and Phantom-2, and the reconstructed conductivity values closely match the true values. However, experiments with Phantom 3, which consist of smaller anomalies, demonstrate that although anomalies with 0.3 cm diameter can still be identified in noise-free setting, noise addition yields severe errors in anomaly boundaries and reconstructed conductivity around transition regions. While the weighted median filter, especially in the noisy setting, mitigates some artifacts and modestly refines conductivity values, it does not fully alleviate the problem. The same pattern is also observed in the physical phantom (Phantom-4) scan: anomaly edges remain sharp, but reconstructed conductivity near those transitions continues to exhibit errors. The provided profile plots (along the central line of the middle slice) for each phantom clearly illustrates these results. Regarding the conductivity maps reconstructed via cr-MREPT method, similar to the Helmholtz-MREPT method, boundary artifacts are nearly eliminated around large anomalies in Phantom-1 and Phantom-2 with near-true conductivities. However, smaller anomalies exhibit underestimated conductivities, especially in Phantom-3. Adding noise to Phantom-3 does not introduce significant boundary artifacts in reconstruction but produces a smoother conductivity distribution. These findings are confirmed also in the physical experiments conducted with Phantom-4. The corresponding profiles further highlight these trends.

Conductivity distributions reconstructed by Helmholtz‐MREPT and cr‐MREPT, are compared in terms of artifacts at tissue boundaries, using both simulated and experimental phantoms. Overall, both algorithms demonstrate successful performance but exhibit distinct strengths.

The Helmholtz-MREPT approach detects anomaly boundaries sharply but can introduce errors in conductivity estimates and artifacts near edges. By contrast, the cr-MREPT method offers greater robustness against noise. However, its low-pass filtering effect tends to smooth the conductivity distribution and softens boundary definition.
Elif YALI (Ankara, Turkey), Emine Ulku SARITAS, Yusuf Ziya IDER
15:40 - 17:10 #46693 - PG450 Optimizing Echo Planar Imaging for Improved BOLD Sensitivity in Deep Gray Matter Structures.
PG450 Optimizing Echo Planar Imaging for Improved BOLD Sensitivity in Deep Gray Matter Structures.

fMRI typically uses echo-planar imaging (EPI), which is highly vulnerable to field inhomogeneities causing signal dropout and geometric distortions. Optimizing EPI parameters, such as phase encoding (PE) direction, tilting slices to distribute susceptibility-induced field gradients across multiple axes, and incorporating z-shimming offers a valuable tool for maximizing Blood Oxygen Level Dependent (BOLD) Sensitivity (BS) in targeted brain regions. Previous studies have estimated BS gains by specifying a global effective transverse relaxation rate (R₂*) [1,2]. However, this neglects anatomical variation within and between ROIs. In this study, we investigated the impact of incorporating spatially varying R₂* values on BS optimization, focusing on iron rich deep gray matter structures—the putamen and pallidum—which have distinctly high R₂* values. These structures play a crucial role in many cognitive functions and are affected in a range of neurological disorders. The hippocampus was also evaluated for comparison.

B0 field maps and high resolution (1mm³) R₂* maps from a large cohort (n=138; Fig. 1) spanning a broad age range were used [3] to model the impact of susceptibility-driven magnetic field gradients. BS was estimated using analytical expressions [2,4], considering a standard 3T 2D EPI protocol (transverse orientation, TE = 30 ms, echo spacing = 0.5 ms, resolution = 3×3×3 mm³). Optimization was performed by systematically varying PE direction (posterior-anterior, PA vs. anterior-posterior, AP), slice tilt (-45° to 45°), and z-shim gradient moment (-5 to 5 mT/m*ms). Regions of interest—putamen, pallidum, and hippocampus—were defined using the AAL3 atlas [5]. The field gradients in the PE and slice-selective directions were quantified within these ROIs. Protocol optimization was carried out either (1) using a global R₂* (1/45 ms⁻¹) or (2) using voxel-wise R₂* values. Analyses were performed separately for left and right hemispheres to assess potential asymmetries.

Average PE field gradients were -2μT/m, 10μT/m, 21μT/m in the hippocampus, putamen and pallidum, respectively. In the slice direction, these were 25μT/m, 4.8μT/m and 6μT/m. Optimal EPI parameter sets that yielded the highest mean BS varied by ROI but were largely consistent across hemispheres (Fig. 2). The putamen and pallidum specifically required AP phase-encoding with moderate slice tilts (20° and 10°) to optimally mitigate BS loss. The gains over an optimal PA protocol were substantial (18.9% and 8.3% for the pallidum and putamen respectively, c.f. Fig. 3). For the hippocampus, optimal settings aligned with previous theoretical and empirical studies [1,2]. Opposite PE direction and tilt were obtained for the left and right hemispheres—though these are close to degenerate in the hippocampus (c.f. Fig 3). The optimal parameter sets were largely independent of how R₂* was incorporated into the simulations though a voxel-wise R₂* marginally increased the predicted BS in the hippocampus (Fig. 4).

Field gradient maps alone cannot account for microstructural susceptibility variations. Relying solely on a global R₂* value limits model accuracy. Our use of a spatially-resolved R₂* map from a large cohort improves anatomical fidelity without compromising reliability. The hippocampus with a relatively uniform and small PE gradient profiles was most impacted by voxel-wise R₂* modelling. In contrast, the putamen and pallidum experience much stronger local PE gradients, potentially causing macroscopic field inhomogeneities to dominate over R₂* variability. The putamen’s average R₂* (21.9 s⁻¹) closely matched the global value (22.2 s⁻¹) used in the simulations which minimized the impact of voxel-wise modelling. The hippocampus exhibited considerably more spatial uniformity in R₂*, but with a much lower mean of 15.7 s⁻¹. This increased the predicted BS that could be achieved, though the optimal protocol settings were unaffected. The pallidum, while having a higher average R₂* (33.6 s⁻¹) and greater spatial variance yielded similar optimal settings whether a global or voxel-wise value was used (Figs 2,3). These simulations only considered transverse orientations and used a fixed TE, limiting the potential strategies available to overcome inherent susceptibility gradients. Optimizing for such diverse macroscopic and microscopic field gradients would benefit from spanning a broader range of settings, and will be the focus of future work.

Under the conditions investigated, our findings suggest that the impact of R₂* variability is secondary to macroscopic field homogeneity effects and therefore has limited impact on the optimal protocol settings. Cognitive neuroscience studies typically involve multiple ROIs, where protocol design should consider incorporating knowledge of the underlying microstructure and adopting a constrained optimization approach for balancing trade-offs between ROIs.
Shokoufeh GOLSHANI (London, United Kingdom), Martina CALLAGHAN
15:40 - 17:10 #47505 - PG451 Improving the motion robustness of breath-holding in abdominal 3D T1 gradient echo imaging using a Cartesian acquisition with spiral profile ordering.
PG451 Improving the motion robustness of breath-holding in abdominal 3D T1 gradient echo imaging using a Cartesian acquisition with spiral profile ordering.

Abdominal imaging typically involves multiple breath-hold acquisitions to mitigate respiratory motion artifacts. However, patients' breath-hold capabilities may not cover the full scan duration, leading to incomplete (early respiration onset) or late breath-holds (delayed breath-hold start). When motion artifacts occur, the breath-hold usually must be repeated. Acquiring motion-free central k-space data is crucial to reduce artifacts [1]. Clinically, 3D Cartesian trajectories with pseudo-random undersampling via Compressed Sensing are used in gradient echo imaging to reduce scan times [2], and breath-holds are performed at end-expiration to minimize artifacts [3]. Recently, Cartesian Acquisition with Spiral Profile Ordering (CASPR) has been proposed for free-breathing abdominal imaging [4-7], offering central k-space oversampling that enhances motion robustness and enables self-gating without external navigators [8]. Free-breathing self-gating typically acquires 1D profiles in the feet-head (FH) direction, the most affected by respiratory motion [8], but FH frequency encoding reduces efficiency for high resolution 3D axial abdominal imaging, prolonging scan and breath-hold durations. To improve motion robustness, this work proposes a method using a CASPR trajectory with anterior-posterior (AP) frequency encoding and self-gating to correct respiratory motion artifacts in incomplete and late breath-hold 3D axial liver MRI.

Five volunteers were scanned at 3T (Ingenia Elition X, Philips) using a T1-weighted 3D gradient echo sequence with AP frequency encoding (TE=1.32/2.42ms, TR=3.73ms, scan time=15.8s, voxel size=1.47x1.59x5mm, FOV=358x537x265mm) and a spiral-in-spiral-out golden-step CASPR trajectory (30 profiles/shot, 112 shots). For one subject, a conventional Cartesian acquisition without k-space center oversampling and with pseudo-random undersampling (acceleration factor=7.55) was acquired to compare with the CASPR scan. Each volunteer was asked to perform a perfect, an incomplete breath-hold at end-expiration, and a late breath-hold. Self-gating was performed based on the oversampled central k-space line in AP direction. Coils with sufficient AP motion were selected via coil-wise frequency analysis (low amplitudes for frequencies >1Hz) of the first principal components from the oversampled k-space line. Principal component analysis was conducted on the coil signals to determine a respiratory motion curve. Breath-hold periods were identified using a second-order central finite differences method: curve segments were labelled as breath-holds if the derivative of the curve's moving average (window=7) stayed close to zero over a continuous interval lasting at least 20% of the scan duration. Three reconstruction strategies were explored for the CASPR data. First, images were reconstructed without retrospective motion correction (Fig. 1.1). Then, soft gating and hard gating approaches for motion correction were investigated. For both, data acquired in the breath-hold phase, detected by the previous algorithm, was assigned a weight of one. Soft gating applied a Gaussian weighting centered on the average amplitude of the breath-hold segment to the non-breath-hold data (Fig. 1.2), while hard gating rejected it entirely (Fig. 1.3). All cases were then reconstructed using an iterative reconstruction algorithm with spatial total variation regularization.

Fig. 2 compares a traditional Cartesian acquisition without k-space center oversampling to CASPR for perfect, incomplete and late breath-holds, showing comparable reconstruction results without gating. Motion artifacts are visible for incomplete and late breath-holds also for the CASPR acquisition. Soft and hard gating in the CASPR scans can significantly improve the image quality, with both gating methods yielding similar results during breath-holds at end expiration (Fig. 3). When the breath-hold is in a state different from the end-expiration state, soft gating showed reduced performance in the incomplete breath-hold scan (Fig. 4).

This work proposes a CASPR acquisition for liver breath-hold 3D gradient-echo imaging and compares two respiratory self-gating approaches for motion artifacts correction. The method improves image quality for incomplete and late breath-holds. The inherent self-navigator in the AP direction allows motion estimation even though it is less affected by motion than the FH direction. Current results do not show a clear improvement for soft-gating compared to hard-gating. While the proposed method can improve image quality in motion-affected examinations, scans may remain non-diagnostic if too little k-space data unaffected by motion is available.

A novel breath-hold acquisition strategy using a CASPR trajectory with a self-navigator signal in the AP direction was proposed. Results demonstrate the ability of the self-navigated CASPR to improve the motion robustness of 3D liver gradient echo imaging in incomplete and late breath-hold scenarios.
Alice SCUDELETTI (Munich, Germany), Jonathan STELTER, Kilian WEISS, Rickmer BRAREN, Dimitrios C. KARAMPINOS
15:40 - 17:10 #45859 - PG452 MORSE-PI: Refinement and validation of flexible and robust structural and functional phase imaging.
PG452 MORSE-PI: Refinement and validation of flexible and robust structural and functional phase imaging.

We recently proposed MORSE-PI [1]: a robust and computationally efficient method for coil sensitivity estimation and complex (magnitude and phase) image reconstruction using a regularised SENSE [2] formalism. MORSE-PI produces high-quality images, free of aliasing artefacts and phase singularities, for both structural and functional data, enabling simultaneous magnitude- and phase-based functional or quantitative MRI including high quality Quantitative Susceptibility Mapping (QSM). MORSE-CODE, the precursor reconstruction framework, involves voxel-wise singular value decomposition with an intrinsic singular vector sign and phase ambiguity, often yielding phase singularities, which limits options for QSM calculation and yields sub-optimal results. To overcome this limitation, MORSE-PI computes a Virtual Reference Coil (VRC) [3] to correct the phase of the estimated coil sensitivities. Here, we improve the robustness of the VRC calculation and subsequently evaluate MORSE-PI by comparing image quality against other state-of-the-art image reconstruction methods, and quantifying reproducibility.

MORSE-PI uses k-space calibration data, embedded within the accelerated acquisition or acquired separately, to estimate complex coil sensitivities. Prewhitening, using a measured noise covariance matrix, improves image SNR by decorrelating the coil channels. However, for VRC creation in MORSE-PI we instead increase the cross-channel correlation to achieve a robust VRC with signal support over the entire field of view. This is achieved by repeatedly applying the inverse of the prewhitening matrix. Doing so twice has proved sufficient to create singularity-free phase results in diverse scenarios including EPI and gradient echo (GRE) readouts, at 3T and 7T with 64 and 32 channel head coils respectively. The final VRC is a voxel-wise complex sum of coil sensitivities, after scalar phase matching. The reference voxel was originally [1] the image centre. However, using the phase value from the weighted centroid of the image improves robustness to specific head position within FOV. The VRC phase is subsequently used to correct the phase of the original prewhitened MORSE-PI coil sensitivities. The final magnitude and singularity-free phase images are reconstructed using a regularized SENSE formalism. The method is deployed as a MATLAB-based gadget within Gadgetron [4] for real-time reconstruction.

MORSE-PI has been deployed for a diverse range of 3T and 7T studies in our department, yielding high quality magnitude and singularity-free phase images. Protocols used to illustrate exemplar results are listed in Fig 1. Fig.2 compares 3D GRE MORSE-PI results at 7T with three alternative image reconstruction methods tailored to phase imaging. GRAPPA+Adaptive-Combined and ESPIRiT are corrupted by phase singularities, yielding image artefacts (red arrows), whereas GRAPPA+ASPIRE and MORSE-PI both provide singularity-free phase images and high-quality CLEAR-SWI and QSM results. Fig.3 is a quantitative comparison of scan-rescan QSM based on 3D GRE acquisitions reconstructed with GRAPPA+ASPIRE and MORSE-PI at 3T and 7T. The histograms show higher standard deviation for GRAPPA+ASPIRE than for MORSE-PI, across field strengths and contrasts, but particularly at 3T. MORSE-PI can be applied flexibly whereas GRAPPA+ASPIRE requires multi-echo data. Fig.4 evaluates the temporal stability of MORSE-PI based magnitude and QSM results derived from single echo, slab-selective high-resolution 3D EPI [5] over 50 volumes. Various QSM processing pipelines can be used, including NORDIC denoising [6,7], showcasing MORSE-PI’s flexibility.

MORSE-PI calculates coil sensitivities and corrects their phase using a VRC approach. The original implementation [3] calculated the VRC from coil-wise reconstructed complex images, rather than sensitivities, which can lead to focal regions without VRC support and therefore phase singularities [8]. We ensure here that the VRC estimate is supported over the entire volume of interest by (1) estimating the VRC sensitivity in a heavily correlated coil space, rather than in the prewhitened space in which the sensitivities are in general steeper and more likely to yield poor VRC support, and (2) using a weighted centroid to more robustly select the phase-matching voxel. MORSE-PI performed well against state-of-the art phase imaging approaches with enhanced flexibility for protocol and processing choices (c.f. Fig.4). MORSE-PI achieved good reproducibility (GRE) and temporal stability (EPI) of QSM results.

MORSE-PI flexibly provides reproducible, high SNR, fold-over-free and singularity-free phase images, as demonstrated for single-echo and multi-echo structural GRE and functional EPI scans. MORSE-PI naturally lends itself to imaging techniques, such as structural and functional QSM, that necessitate high-quality phase images without additional scan time or compromising magnitude image quality.
Barbara DYMERSKA (London, United Kingdom), Oliver JOSEPHS, Nadine GRAEDEL, Vahid MALEKIAN, Callaghan MARTINA
15:40 - 17:10 #47771 - PG453 Partial Volume Effects across tumor regions in ASL perfusion imaging of Glioblastoma.
PG453 Partial Volume Effects across tumor regions in ASL perfusion imaging of Glioblastoma.

Glioblastomas (GBM) are malignant brain tumors with a 2-year survival rate of ~27% [1]. MRI is the preferred technique for diagnosis and monitoring of GBM. Perfusion MRI helps assess treatment response and possible recurrence, as increased perfusion suggests angiogenesis associated with tumor growth [2]. Arterial Spin Labelling (ASL) stands out for delivering cerebral blood flow (CBF) maps without the need for exogenous contrast agents [2]. Unfortunately, it suffers from intrinsically low signal-to-noise ratio and poor spatial resolution [2-3], which can lead to Partial Volume Effects (PVEs). Although Partial Volume (PV) correction methods have been developed for ASL perfusion imaging [3-4], these were aimed at resolving PVEs between gray matter, white matter, and CSF. Here, we aim to assess and correct PVEs across the three tumor regions of interest (ROIs) that are usually considered in GBM assessment: enhancing tumour (ET), necrotic and non-enhancing tumor core (NCR/NET) and edema.

Data from 3 illustrative GBM patients were analysed in this study, including pseudo-continuous ASL (PCASL, TR/TE =91.42, TI=2.025 s, readout= 3D stack of spirals fast spin echo with 6 arms, 2 repetitions, voxel size = 1.875x1.875x4.000mm³) and T1-weighted contrast-enhanced (T1CE) images acquired on a 3T GE system (Fig. 1). T1CE images were skull-stripped and registered to Brain Tumour Segmentation (BraTS) space with 1mm3 isotropic resolution. Three ROIs (ET, NCR/NET and edema) and a fourth class representing the rest of the brain were defined using an ensemble deep learning model that combines the outputs of two networks: a ResNet and a UNet with a Swin transformer as the encoder [5]. Registration between the T1CE and PCASL images was performed using an affine transformation with the ANTsPy library. The 3 segmented ROIs and rest of the brain class were transformed into the PCASL space and normalized in such a way that the sum of the 4 classes is 1 in each voxel, yielding the PVs for each class: wk, j (for each voxel j and class k). Relative CBF (f) maps were obtained by averaging the control-label images across repetitions. The mean CBF (f) was then calculated for each tumor ROI, defined by considering PV thresholds t between 10% and 100% in 1%-steps (down to a minimum of 10 voxels per ROI). PV correction was performed by assuming a constant f value in each tumor ROI: fNCR/NET, fET and fedema, and then solving the following equation to estimate them: fvoxel j=k in {NCR/NET, ET, edema}wk, j.fk (2) First, initial values were obtained by linear regression of f as a function of PV threshold in each ROI. Then, the system was solved iteratively using different loss functions (least squares, soft_l1, and huber), using “least_squares” function from SciPy’s optimization module.

f (Fig. 2) increases with threshold in ET, indicating PVEs from surrounding low-perfusion tissue. In edema, f decreases as threshold rises, likely due to exclusion of high-perfusion voxels (namely, ET and NCR/NET). NCR/NET shows patient-specific trends: stable in patient 1, decreasing in patient 3, and inconclusive in patient 2, where voxel count is lowest. In patient 1, histogram analysis (Fig. 3) confirms these trends: thresholding excludes low-f voxels in ET and high-f voxels in edema, shifting the mean accordingly. In NCR/NET, voxel removal is balanced around the mean, resulting in minimal net change. Similar patterns appear across patients. Solving equation (2) produced fNCR/NET, fET and fedema estimates (Fig. 2), which, when applied to original CBF maps, yielded corrected maps. Estimates varied across patients and methods, with loss-based approaches showing possible presence of mild outliers, since estimates were lower when compared to least-squares loss. Moreover, least-squares loss provided estimates closer to the initial guesses. This is expected, as the least-squares loss minimizes the sum of squared residuals, naturally favoring solutions closer to the initial estimate (in this case, the mean CBF at t = 100%).

Rising f in ET supports higher perfusion relative to surrounding tissue, with PVE driving the trend as low-perfusion contamination is reduced. Decreasing f in edema reflects exclusion of high-perfusion voxels from neighboring regions. NCR/NET behavior is less consistent due to low voxel count and regional overlap, limiting conclusions despite its expected low perfusion. Variability in the estimated volume fractions (PVs) across patients and methods highlights individual anatomical and segmentation differences, probably affected by tumour sizes. Since PVEs are minimized, corrected maps offer better delineation of perfusion characteristics across tumor subregions.

This study highlights the presence of PVEs in ASL CBF maps across the GBM regions, potentially affecting ROI-based analysis, including radiomics approaches. More accurate perfusion estimates in tumor regions could enhance treatment planning and therefore contribute to GBM recurrence reduction.
Afonso SIMÕES (Lisboa, Portugal), Catarina PASSARINHO, Marta P. LOUREIRO, Ana MATOSO, Pedro VILELA, Rita G. NUNES, Patrícia FIGUEIREDO
15:40 - 17:10 #47805 - PG454 Finding the optimal saturation scheme for combined detection of APT and NOE effects. Application to Parkinson's disease at 3 T.
PG454 Finding the optimal saturation scheme for combined detection of APT and NOE effects. Application to Parkinson's disease at 3 T.

Parkinson’s disease is a neurodegenerative disorder characterized by physiological changes in the brain. One hypothesis is the aggregation of the alpha synuclein (α syn) protein, leading to neuronal death [1]. Chemical Exchange Saturation Transfer (CEST) MRI provides insights into protein content through amide proton transfer (APT) contrast [2] and the Nuclear Overhauser Effect (NOE) [3]. Standard CEST imaging requires long saturation pulses, extending scan time and limiting clinical implementation. In addition, CEST signal depends on the pulse sequence features and parameters used, which may lead to differences in image contrast and interpretation. This study aims to identify an optimal saturation scheme to achieve high APT and NOE effects while minimizing acquisition time.

Simulation: To first investigate acquisition parameters on NOE and APT-CEST effects, simulations were performed using a three-pool model, based on and adapted from scripts available in the pulseq-cest-library (https://github.com/kherz/pulseq-cest-library). Phantom: A phantom with raw and coagulated egg white (REW and CEW) was prepared, as egg white is a suitable model for mobile protein amide protons [4] (Fig. 1). Healthy volunteers: Four healthy volunteers (HV), from 20 to 50 years old with no history of neurological disorder (Clinical trial NCT05107232; Univ. hospital of Rennes). MRI data acquisition: All phantoms and HV data were acquired at 3 T (Magnetom Prisma VE11C; Siemens Healthineers; Erlangen; Germany) using a 64-channels head coil. The 3D gradient recalled echo (GRE) CEST snapshot sequence [5] was used. For the saturation scheme, a total of 29 saturations offsets were swept from -6.0 to 6.0 ppm every 0.5 ppm, with repeats at -3.5 and 3.5 ppm (n=3 each). The unsaturated reference was acquired at -300 ppm. Several saturation parameters were investigated to identify the optimal conditions for maximizing the APT ratio such as the number of pulses (np, from 10 to 50 every 10) and the B1 (from 0.6 to 3.0 µT every 0.1 µT). The time pulse tp and delay td were fixed at 50 ms and 5 ms respectively. The GRE readout parameters followed literature standards [5]. For phantoms, acquisitions were repeated five times in different MRI sessions and a Magnetization Prepared Rapid Acquisition Gradient Echoes sequence and a Turbo Spin Echo sequence were used to quantify T1 and T2 values respectively, in REW and CEW. For HV, an additional 3D T1w (spatial resolution of (1 mm)3) was acquired to segment cerebral regions of interest (ROI). Processing: CEST images were analyzed using MATLAB and the adapted CEST_EVAL toolbox (https://github.com/cest-sources/CEST_EVAL). Two ROIs were defined in REW and CEW. MTRasym was computed to compare saturation schemes. In HV, gray/white matter and six deep gray nuclei were segmented from T1w images using FreeSurfer [6].

Simulations pre-identified optimal saturation parameters such as np=35. Fig. 2 shows the simulated Z-spectra and MTRasym curves for REW vs CEW, using in vitro quantified T1 and T2 and the previously optimized B1 and np. A clear distinction between REW and CEW is visible, reflecting protein denaturation on the CEST signal. For phantom CEST acquisitions, the minimum np was 35 for reliable analysis. Fig. 3 shows the APT-ratio maps for varying B1 values, showing increased APT contrast with B1. Full Z-spectra and MTRasym in REW vs CEW in Fig. 4 confirmed these observations, with distinct dips at 3.5 ppm in every Z-spectrum (Fig. 4.A-B), less pronounced in CEW which is consistent with less amide protons exchanging with bulk water. The MTRasym (Fig. 4.C) peaked at 3.5 ppm for every B1. More precisely, the highest ratio appeared at B1=2.2 µT with a MTRasym=0.16. From this peak, the MTRasym values decreased consistently down to 0.04 for B1=0.6 µT. Fig. 4.D showed less intense peaks as expected, due to a reduction of protons exchanges and NOE effect. The highest difference between MTRasym of REW vs CEW at 3.5 ppm was spotted at B1=2.2 µT (Fig. 4.E), demonstrating the optimum B1 value to differentiate both forms of proteins. Preliminary in vivo data were coherent with our initial in vitro observations as APT CEST signal was higher in gray matter than in white matter due to its greater content of mobile proteins.

This study optimized the CEST saturation scheme of the 3D GRE snapshot CEST sequence [5] to achieve high APT and NOE contrast at 3 T. Saturation schemes and parameters tested demonstrated a substantial impact on the resulting Z spectrum and MTRasym. Other parameters can also have an impact such as the duty cycle as well as the pulse shape. Further analysis is ongoing to refine these parameters by simulating a three-pools model to compute the Z-spectrum.

For a 3 T acquisition on mobile proteins, we have identified a saturation scheme that maximizes the APT and NOE ratio. Future work will focus on investigating different conformations of α-syn, given its relevance in the context of Parkinson’s disease.
Aurélien HERVOUIN (Rennes), Johanne BEZY-WENDLING, Fanny NOURY
15:40 - 17:10 #46660 - PG455 Physics-Inspired Coil Profile Estimation for Accelerated Phase-Cycled bSSFP Imaging.
PG455 Physics-Inspired Coil Profile Estimation for Accelerated Phase-Cycled bSSFP Imaging.

Balanced Steady-State Free Precession (bSSFP) imaging offers high signal-to-noise ratios (SNR) but is highly sensitive to field inhomogeneities, leading to banding artifacts [1]. Phase-cycling effectively reduces these artifacts by shifting the bandings across images but significantly increases scan time [2]. To overcome this limitation, strategies similar to parallel imaging have been proposed to accelerate across multiple acquisitions. A banding-free image can then be reconstructed by treating phase-cycled images as virtual coils [3, 4]. A key challenge in this approach is the accurate estimation of bSSFP profiles. Although off-resonances vary smoothly, the spectral response of bSSFP causes rapid intensity variations associated with banding artifacts in image space. Conventional methods, which simply use the low-frequency information from auto-calibration signals can thus not fully represent these transitions and suffer from inaccuracies in the estimated profiles. We introduce a physics-inspired approach that leverages off-resonance information directly from auto-calibration signals. Thus, the bSSFP signal behavior is more accurately reflected and reconstruction quality improves, especially at high acceleration factors.

Experiments were conducted on a 1.5T scanner (neo315, Neoscan Solutions GmbH) using a multi-compartment phantom with five tubes containing different PVP concentrations [5]. Images were acquired using a 3D phase-cycled bSSFP sequence (flip angle = 50°, TR/TE = 6/3 ms, resolution=1x1x1 mm3) with eight different evenly spaced RF phase increments. Imaging was prospectively accelerated using two and 3-fold uniform undersampling in both phase-encoding directions with a fully sampled 50×50 auto-calibration region (ACS). A fully sampled acquisition was also retrospectively undersampled (R=1x8) using 2D CAIPIRINHA and interleaved disjoint undersampling patterns (Figure 1) to ensure unique undersampling per acquisition [6]. Reconstruction was then performed using the CG-SENSE algorithm and g-factor was calculated in all pixels to assess quality [7]. The proposed physics-based method introduces an additional step in the reconstruction pipeline to account for rapid bSSFP signal variations. First, Low-resolution off-resonance maps were estimated from the ACS using the PLANET method [8, 9]. Then, the maps were interpolated to full imaging resolution and incorporated into the bSSFP signal model to generate profiles that more accurately capture the spatial variations (Figure 2).

As shown in Figure 3, the physics-based profile estimation improved image quality compared to the conventional method, as reconstructed images showed fewer aliasing artifacts and improved signal uniformity. In addition, g-factor analysis indicated lower noise amplification using the proposed method in all cases. The method preserved steady-state magnetization after acceleration without introducing eddy current distortions or off-resonance artifacts. Prospective undersampling confirmed these results, achieving up to 70% scan time reduction while maintaining high image quality. Retrospective undersampling further showed that varying sampling patterns across acquisitions improves results, with interleaved sampling providing a nearly artifact-free reconstruction at high acceleration factors (Figure 4).

The proposed profile estimation method improves reconstruction quality by introducing an additional computationally efficient step that requires no extra data acquisition. The estimated profiles provide a more precise representation of rapid signal variations, such as those occurring near bSSFP nulls, which are often missed by conventional low-resolution estimates. These errors can become more pronounced at longer TRs or under specific T2/T1 and flip angle combinations. By incorporating off-resonance maps and the bSSFP signal model, our method outperforms conventional approaches while relying solely on ACS data. In Figure 3, g-factor values below one appear due to regularization, which can partially improve apparent SNR [10]. Also, the decrease in the calculated g_max likely results from problematic pixels in areas of strong aliasing artifacts, which were subsequently reduced through improved profile estimation. Undersampling patterns also play an important role in optimizing reconstruction quality. As shown in Figure 4, using distinct patterns for each phase-cycled acquisition improved reconstruction quality. These sampling strategies not only alter aliasing appearance and enhance k-space coverage, but also lead to a better-conditioned reconstruction problem for CG-SENSE.

The proposed reconstruction framework enables substantial acceleration of phase-cycled bSSFP imaging while preserving image quality. By incorporating off-resonance modeling, the method achieves up to 70% scan time reduction without compromising reconstruction performance. These results highlight the potential for faster, more robust bSSFP imaging in clinical practice.
Maryam KARGARAN (Halle, Germany), Anne SLAWIG, Oliver SPECK, Volkert ROELOFFS
15:40 - 17:10 #47358 - PG456 Multi-endor and multi-site gradient echo-based characterization of 13C coils for clinical studies.
PG456 Multi-endor and multi-site gradient echo-based characterization of 13C coils for clinical studies.

Radiofrequency (RF) coils are an integral part of the MR technology stack, and their characteristics and differences are important to consider when designing a successful study. Hyperpolarized magnetic resonance spectroscopy (MRS), mainly using [1-13C] pyruvate [1, 2], is driving an increased technical development in 13C MRI imaging [3]. Non-hyperpolarized imaging studies with stable 13C compounds, like glycogen investigations, are also being pursued [4]. 13C MRS offers unique metabolic insights that complement clinical diagnostics. Due to the short half-life (~ 30 s [5]) and unrecoverable hyperpolarized 13C signal [6, 7], sequences for hyperpolarized imaging needs to be very fast and RF effective to avoid signal spoiling. Evaluating and comparing MR coils for B1+ homogeneity and B1- sensitivity is vital due to the intrinsically low 13C SNR. Finally, multi-center evaluation is important for robust clinical application, highlighting the need for consensus and standardization in order to assure reliable data comparison [8]. We present a novel QC protocol for clinical 13C coils using a basic and cross-platform compatible Gradient Echo (GRE) sequence (Fig. 1). This was tested and compared to a Chemical Shift Imaging (CSI)-based method proposed by Sanchez-Heredia et al. [9]. The GRE protocol was evaluated against the CSI protocol on two 3T Siemens Biograph mMR PET/MRI systems at Rigshospitalet (RH1 and RH2, Copenhagen, Denmark) and on a 3T GE Discovery MR750 system at Aarhus University Hospital (AUH, Aarhus, Denmark). Additionally, the GRE framework was tested on a 3T GE Premier XT system at Cambridge University (CAM, Cambridge, United Kingdom).

All scans used an ethylene glycol phantom (≥99.0% purity, Merk, Darmstadt, Germany) loaded with 17 g/L NaCl [9]. Flip angle (FA) calibration was done before each experiment. The CSI method (9:36 scan time) is based on spectral analysis of a CSI and a separate noise FID scan [9]. We propose a simpler, image-domain-based method. The SNR is calculated using the mean signal (s) of the phantom and the standard deviation of the background area (b): SNRGREdB = 10*log10(s ̅/σ(b)) (1) The GRE sequences were acquired with a slice thickness of 100 mm, averages of 1, 4, 8, 16, 32, a 64x64 matrix size, 400x400 mm FOV, 60 Hz/px BW, 25o FA, 50 ms TR, 14 ms TE. Scans were acquired in axial and sagittal planes and averaged for two measurements per coil. GRE images were normalized by the background mean (5x5 pixels in each corner). An SNR image was created according to eq. 1. The hottest SNR pixels inside the phantom were extracted both for the GRE and CSI methods. Analysis was performed in Python version 3.9 (Python Software Foundation, Delaware, USA) [10]. After the comparative study between RH and AUH, the GRE method was implemented at CAM using 16 averages (83 s scan time). The characteristics of the coils tested in this study are described in Tab. 1.

Fig. 2 illustrates SNR as a function of averages at RH and AUH (R2 = 0.96), and a summary of GRE (16 avg.) and CSI results is presented in Fig. 3. The SNR measurements of the two methods correlate (R2 = 0.72, data not shown). At RH, the dual-tuned coils (abdomen, mamma, and flex) show lower SNR compared to the single-tuned 13C head coil. The flex coil at RH shows higher SNR than the other dual-tuned coils. The standard error of the mean (SEM) of the scan planes comparing the GRE, Fig. 3A, and CSI, Fig. 3B, shows less deviation between the scan planes when using the CSI method compared to the GRE apparent across all sites.

The novel GRE method used for SNR estimation showed a linear correlation with the CSI method (R2 = 0.72). GRE SNR ranged from 12.0 dB to 17.8 dB, and the CSI method showed a wider range and higher level from 52.3 dB to 64.5 dB due to the longer scan time. The GRE method has the advantage of shorter acquisition time and simplified analysis. The RH head coil (RH2) showed the highest SNR at 17.8 dB using GRE, likely due to its simpler single-tuned design, like the 17.4 dB SNR seen of the breast coil at CAM. Among dual-tuned coils, flex coils generally had the highest SNR (e.g., 16Ch flex and Patch at AUH, and flex at RH2). The 1.5 dB SNR difference of the head coil at RH is likely due to RH1’s older hardware (amplifier and Faraday cage), reflecting a 7-year system age gap. The GRE sequence showed a maximum SNR difference of 6.2 dB (116.7 %), while the CSI method showed a 12.2 dB (177.3 %). RH2 showed the highest SNR (Head coil #3 Tab. 1), and AUH, NaCl coil #12 Tab. 1, had the lowest for both methods. A similar pattern of SNR between 13C coils has previously been shown [9].

We introduced a new GRE-based 13C coil characterization method, showed excellent correlation to previous methods and successfully tested at three sites with multiple scanners and vendors. This method provides a fair SNR comparison, making it easy, fast, robust, and free of charge [10].
Emil CHRISTENSEN (Copenhagen, Denmark), Andreas CLEMMENSEN, Esben Soevsoe S. HANSEN, Jonathan BIRCHALL, Mary A. MCLEAN, Christoffer LAUSTSEN, Andreas KJAER, Thomas Lund ANDERSEN
15:40 - 17:10 #47663 - PG457 The effect of k-space sampling scheme on sodium quantification accuracy using external reference phantoms.
PG457 The effect of k-space sampling scheme on sodium quantification accuracy using external reference phantoms.

The most common MRI method of sodium (23Na) concentration imaging quantification is to calculate tissue sodium concentration (TSC) maps using references of known sodium concentrations. The phantoms are placed in the field-of-view (FOV) inside the RF coil in proximity of the anatomical region of interest [1,2]. The reference signal concentrations are known and used to create a signal intensity vs. concentration curve (via linear regression) to map voxel signal intensities to their corresponding sodium concentrations. These external references can experience severe B0 field inhomogeneities causing uncorrectable susceptibility artifacts, along with B1 field inhomogeneities that worsen the signal loss after correction which can introduce error into the TSC map [2-7]. Different k-space sampling schemes have been implemented for 23Na-MRI: gradient-echo (GRE) Cartesian, constant-amplitude 3D radial (CA-3DPR) [8], density-adapted 3D radial (DA-3DPR) [9], FLORET [10], rotated spiral imaging [11], and 3D cones [12]. The goal of this work was to evaluate commonly used sodium sampling trajectories in terms of sensitivity to field inhomogeneities and accuracy of quantification in the calculated TSC map.

Sequences were designed and optimized in MATLAB for optimal SNR [13], and implemented on a 3T MR750 (GE HealthCare, Waukesha, WI). The FID for each trajectory was apodised during reconstruction with a matched-filter for increased SNR. Readout times (TRO) in four DA-3DPR sequences (TRO: 5-20ms) were created and compared. Based on simulation, an optimal TRO of 15ms was used for trajectory comparisons (CA-3DPR, Cartesian, FLORET, Spiral, Cones). To investigate steady-state free precession (SSFP) effects, the 15ms DA-3DPR was modified by removing the spoiler gradient. All sequences were designed to have an 80x80x80-matrix size and were acquired over a 240mm FOV. Each sequence was acquired in ~10 minutes, with more efficient sampling schemes having multiple averages. A 15cm diameter spherical phantom (3% agar with 15mM NaCl), embedded with six 50mL Falcon tubes (3% agar with sodium concentrations of 30-110mM) was fabricated (Fig.1). The phantom was scanned 16 times with each sequence using a 23Na-tuned 16-rung quadrature birdcage T/R RF head coil (24cm diameter) made in-house, with three external references placed alongside the phantom in the coil FOV. The references consisted of 3% agar in 50mL Falcon tubes of sodium concentrations 30, 45, and 70mM. For each acquisition the mean signal from each of the three references was extracted and linearly regressed to form a signal intensity vs. concentration curve. The mean signal from each of the 7 target concentration regions within the phantom were then mapped to a concentration using the regressed curve (Fig. 2) and then the residual ([23Na]predicted – [23Na]expected, in mM) for each concentration region was calculated (Figs. 2,3). The median residual was calculated for each target concentration region for each sequence (Table 1). As sequences were optimized for brain tissue, accuracy was also determined in the biological range of 20-70mM [1] (Table 1). The residuals were modelled as a linear mixed effects regression model (LMER) using R [14,15], accounting for repeated acquisitions, and was assessed using ANOVA to determine if trajectory contributed significantly to the variance of residuals.

When considering the median residual of the target concentration in all regions (Fig. 3), the sequences in order of most to least accurate are: CA-3DPR, 3D cones, FLORET, Cartesian, rotated spiral, DA-3DPR 5ms, DA-3DPR SSFP, DA-3DPR 10ms, DA-3DPR 20ms, and DA-3DPR 15ms. However, due to some of the sequences having residuals crossing 0, it may be more relevant to report the medians of the |residuals|, given in Table 1. Other than the CA-3DPR sequence dropping from most accurate to third accurate, the order remained unchanged. When considering only biologically relevant concentration regions, the order of accuracy remained similar, but the residuals were reduced. Both sequence (p<0.001) and target concentration (p<0.001) contributed significantly to variance for the LMER residual model. SNR, however, did not (p=0.36).

K-space sampling schemes contribute significantly to the quantification error in TSC maps when using external reference phantoms. Evaluating signal intensity vs. concentration curves in commonly used sequences, 3D cones and FLORET schemes indicated highest accuracy and DA-3DPR lowest. Accuracy varies based on target concentration which is relevant to anatomical region. Thus, the most and least accurate sampling schemes may change, depending on what range of concentrations are to be measured. For example, 55mM is the overall average concentration in the brain, and the DA-3DPR sequences perform significantly better with that concentration than the CA-3DPR and Cartesian sequences. However, these results are opposite when considering a lower concentration as seen in prostate (30-40mM).
Cameron NOWIKOW (Hamilton, Canada), Rolf F SCHULTE, Michael VAEGGEMOSE, Michael D NOSEWORTHY
15:40 - 17:10 #47814 - PG458 Free breathing compressed sensing dynamic T1 weighted techniques for the liver : golden radial angle vs extra-dimensional, from phantom to patient.
PG458 Free breathing compressed sensing dynamic T1 weighted techniques for the liver : golden radial angle vs extra-dimensional, from phantom to patient.

Accurate liver dynamic MRI/CT is useful in metastatic or hepatocellular carcinoma liver disease. High temporal resolution is needed for accurate arterial phase evaluation. Breath-hold examinations can be difficult for the patient and may result in non-diagnostic quality, which cannot be repeated. When comparing techniques, dynamic techniques cannot be evaluated pairwise due to the need for real-time contrast agent administration. This study aimed to assess the performance of two compressed-sensing based, free breathing acquisition techniques at 1.5T and 3T on phantom in order to be able to optimize on phantom.

Extra-dimensional (XD) and Golden Radial Angle with Sparsity (GRASP) techniques with equivalent TE and TR were evaluated on a 1.5T and 3T MRI (Siemens Healthineers) across a range of flip angles (5-30°) and various fat saturation/suppression methods on phantom. Distortions, artefacts and contrast ratio’s (CR) were evaluated between temperature corrected 346, 489 and 691 ms T1 inserts but also oil for fat saturation. Signal-To-Noise Ratios (SNRs) were assessed using both a pixel-wise series of measurements (SNRmult) and two acquisition subtraction method (SNRNema1). A direct comparison on volunteer was made for liver percentage signal uniformity, contrast ratio between liver, muscle, saturated and non-saturated subcutaneous fat but also between regular and irregular respiration for both XD and GRASP (2 repetitions). Patient contrast-enhanced CRs at peak contrast and in the late phase were evaluated for the spleen, arterial input function (AIF) and liver parenchyma in 18 patients (89 MRIs) who underwent combinations of XD/GRASP and 1.5T/3T examinations over time. Pairwise comparisons of techniques, MRI systems, patients and organs were performed using Games-Howell tests with Holm-Bonferroni correction. Differences in coefficients of variation (CV=σ/µ, standard deviation/mean) were evaluated using Levene tests. This study was approved under Ethical Committee CEC-2025-011.

Phantom distortions were under 1 mm for both GRASP and XD. A trade-off was observed between artefact intensity and extent between GRASP and XD techniques. Phantom CR was reproducible with a CV of 1.6% for XD and 3.2% for GRASP respectively. SPAIR fat saturation reduced fat signal more efficiently for GRASP (90%) than XD (85%), while standard fat saturation was not statistically significant different between GRASP and XD (34-39% reduction). However, SPAIR came with streaking artefacts for GRASP, reduced SNR, reduced T1 489-691 ms contrast for GRASP and XD by respectively 12% and 4% while standard fat saturation did not significantly reduce contrast in that range. Finally, SPAIR required lower temporal resolution. Across flip angles and fat saturation, with equivalent TE and TR, GRASP showed in phantom slightly better contrast compared to XD, between 6% -15% for 489-691 ms while 14-30% for 346-489 ms T1 value (figure 1). Phantom signal reproducibility showed a CV of 1.5% for XD and 2.7% for GRASP; however, SNR evaluation using the NEMA1 two-image subtraction method resulted in a 54% and 37% CV for XD and GRASP, due to inconsistent noise assessments. Pixel-wise SNRmult showed higher SNR for GRASP, combined with higher temporal resolution. Figure 1 shows that volunteer-based forced irregular respiration did not show any significant artefacts for either XD or GRASP. Liver percentage signal uniformity was statistically significant better for XD (90%) compared to GRASP (84%) while liver/muscle contrast ratio and fat saturation was better for GRASP. Dynamic contrast-enhanced intra and inter-patient CRs showed 15% coefficient of variation for the liver and spleen and 30% for the uncorrected AIF. Contrast-enhanced liver peak- and late-phase CR was statistically significant higher for 3T compared to 1.5T, and highest for the XD/3T combination. In clinic, here was a preference for the XD sequence type with reporting of false negative lesions for GRASP.

Phantom results showed equivalent distortions and trade-off metal and air artifacts. While SPAIR could improve fat saturation, this came with important contrast and SNR reductions and loss in temporal resolution. Phantom results indicated better contrast and SNR for GRASP. Patient GRASP texture appeared sometimes “grainy” while XD texture was more smooth. Volunteer results showed that irregular respiration, but without movements, was equally corrected by both GRASP and XD. This could possibly indicate that patient movements, during contrast agent administration, were at the origin of artefacts differently corrected by XD, hence the clinical routine preference for XD.

Detailed phantom evaluations, based on T1 values, did not align with patient findings: besides a slight uniformity gain in XD, GRASP performed better in phantom. Patient findings showed improved contrast agent enhancement for 3T/XD, next to in-clinic preference and readability for XD. Further research is required to represent
Maxime HUYGHE, Amine ADJOUD (Lille), Eva BRIGE, Sylvain HAVET, Imen EL AOUD, Frederik CROP
15:40 - 17:10 #47306 - PG459 Real-time FIESTA to visualise brain motion in Chiari malformation type 1.
PG459 Real-time FIESTA to visualise brain motion in Chiari malformation type 1.

Chiari malformation type 1 (CM1) is a common condition (the prevalence is approximately 1% in the general population), although it is often an incidental finding and must therefore be related to symptoms. CM1 is defined as a descent of the cerebellar tonsils > 5 mm below the foramen magnum. However, any symptoms are due to altered cerebrospinal fluid (CSF) flow and compression of nerve structures. The Monro-Kellie doctrine postulates that the sum of CSF, blood and brain is constant [1]. In normal individuals the brain motion at the interface of head and spine is very small (approximately 0.14 mm of the brain stem and approximately 0.40 mm of the cerebellar tonsils) [2]. In CM1, due to crowding of the brain stem and herniating cerebellar tonsils in the foramen magnum, the CSF flow is hindered and consequently the brain structures have to move more in relation to the cardiac cycle and respiration. Detecting this increased brain motion is of value in deciding whether or not to perform surgery. Current methods used, such as phase contrast MRI, all depend on gating, either cardiac or using a peripheral pulse oximeter. Failure to achieve good gating is not uncommon with ECG electrodes or pulse oximeters having to be readjusted. We therefore developed a real-time FIESTA sequence (rtFIESTA) that easily visualises brain motion and avoids any problems with gating.

The rtFIESTA sequence is a standard Cartesian balanced steady state free precision sequence (bSSFP), except that it has been optimised to acquire a burst of eleven repetitions of a slice. Bursts are separated by a (necessary) pause to reduce SAR, which results in a disruption of steady state between image sets (note the periodic disruption of image contrast in Figure 1). A single burst is acquired with a single continuous waveform on each gradient amplifier ensuring a k-space velocity (gradient amplitude) that is always greater than zero. This eliminates any deadtime to reduce TR and banding artefacts. The rtFIESTA sequence achieved a temporal resolution of 5 Hz with an in-plane resolution of 1 x 1 mm (24 cm field of view) and slice thickness of 4 mm. A 24 year-old patient planned for occipito-cervical decompression surgery of CM1 was examined with rtFIESTA in a neutral position, as well as in neck extension.

The contrast, spatial and temporal resolution was sufficient, with the cerebellar tonsils seen moving in a vertical motion, and the brain stem moving both horizontally and vertically (Fig. 2). During extension the cerebellar tonsils descended slightly more, and the brain stem was slightly more anteriorly positioned, both still moving (Fig. 3). Assessing motion is easily performed as videos in PACS (Picture Archiving and Communication System).

Since CM1 is a common incidental finding, information reflecting the dynamic consequences of CM1 is of importance for the clinician. Phase-contrast MRI can be used, but the degree and direction of motion, as well as the degree of compression of nerve structures is difficult to interpret. FIESTA visualizes the brain clearly and by using rtFIESTA any problems with gating is avoided. The scan time is minimal and the rtFIESTA is easily and immediately analysed in PACS as a video. This enables imaging the patient in different positions of the neck (flexion, neutral or extension), during inspiration, expiration, breath-hold, Valsalva manoeuvre, or even during actual movement of the neck. This would add new information for the clinician, since Valsalva manoeuvre and neck extension is known to worsen symptoms [3]. Although motion is only quantified visually, a substantial motion (as in our case) is expected to be of clinical interest, which has been shown with gated FIESTA in symptomatic CM1 patients [4].

rtFIESTA is an easy method to visualise motion of the brain stem and cerebellar tonsils, which is of interest in patients with Chiari malformation type 1. It can also visualise motion during provocation, such as Valsalva manoeuvre and neck extension, which could add new information to whom should be operated on or not.
Skorpil MIKAEL (Stockholm, Sweden), Henric RYDÉN, Adam VAN NIEKERK
15:40 - 17:10 #47672 - PG460 Servo navigation for prospective head motion correction in structural imaging (MPRAGE and 3D-TSE).
PG460 Servo navigation for prospective head motion correction in structural imaging (MPRAGE and 3D-TSE).

Head motion in MRI remains a challenge and can cause artifacts that prevent image diagnosis or bias quantitative measures (e.g. cortical gray matter volume [1]), especially in clinically relevant cohorts that tend to move more. MPRAGE and 3D-TSE are two widely used structural imaging sequences in clinical routine. Many of the published motion correction methods [2] require external hardware, extensive calibration, or can only be conducted retrospectively. Servo navigation has proven to be a marker-free prospective motion correction (PMC) method requiring minimal calibration, short acquisition and offering high tracking precision in steady-state GRE sequences [3,4,5,6]. This work extends the method to the above mentioned non-steady-state sequences.

Five rapid repetitions of an orbital navigator k-space trajectory (400 rad/m, 2.3ms) were inserted before each inversion pulse (MPRAGE) and RF excitation (3D-TSE) (Figure 1). Each repetition included a small excitation pulse (3°) and spoiler gradients; three additional dummy repetitions were played out before the five navigators. This navigator train was used to accelerate motion prediction convergence by updating the scan geometry between navigators (via libXPACE[7] as described in [5]). The linear perturbation model [3,4] was calibrated by the finite-differences (FD) method [3] during the very first navigator train, acquiring three navigators with rotations around x, y, and z, respectively, followed by two unrotated reference navigators. Phantom experiments were conducted to test the stability and step response of the servo control for two calibration methods (FD vs. projection (PROJ) [3]) under 5° angular or 5 mm translational perturbations applied to the navigator orientation. Two healthy subjects were scanned using a MAGNETOM 7T Plus scanner (Siemens Healthineers, Germany) equipped with a 32 channel Rx (8Tx) head coil (Nova Medical Inc, USA). The first subject was instructed to perform a single large motion during k-space center acquisition of the second volume of a 3D-TSE series (0.5mm iso., TR=3s, TE=504ms, TAvol=5:30 min, GRAPPA 2x2). A similar experiment was repeated with the same subject for an MPRAGE sequence (0.8mm iso., TR=3s, TI =1.1s, TAvol=2:06min, GRAPPA 2x2). For the second subject, a high-resolution MPRAGE (0.5mm iso., TR=3s, TI=1.1s, TAvol=11:12 min, GRAPPA 1x2) was acquired without instructed motion. Each scan was repeated without PMC, but with navigators still included to allow for motion estimation. To identify differences in small arteries of the high-res. MPRAGE scan, maximum-intensity projections (MIPs) were calculated (15 cm slab after registration).

Fig. 1 shows phantom results, comparing servo control convergence under artificial perturbations of individual motion parameters. Although both calibration methods demonstrate rapid convergence within a few iterations, the FD method exhibits larger within-train oscillations. Notably, FD convergence slows when the field of view (FOV) is rotated (e.g., Rx). Hence, the PROJ method was used in the following experiments. Fig. 2 demonstrates clear improvements with Servo PMC under an instructed large motion in the 3D-TSE sequence. Moreover, even without instructed motion (baseline), a reduction of ringing artifacts is noticeable in the coronal zoom in the corrected scan. Fig. 3 presents the results of the MPRAGE motion experiment. As before, Servo PMC yields a clear reduction in artifacts, although it does not fully match the image quality of the reference scan without motion. Fig. 4 presents high-resolution MPRAGE images. Although differences in the magnitude images are subtle, the MIP of the corrected scan shows improvements in the visibility of small arteries.

Oscillations observed in navigator trains of the FD model prediction may result from signal evolution across calibration shots, whereas the preferred PROJ method solely relies on two reference scans. Residual artifacts in all motion experiments may be exacerbated by fast motion, not corrected due to relatively sparse updates. For MPRAGE, this effect could potentially be mitigated by shifting the navigator train closer to the readout, i.e., after the inversion pulse. However, motion occurring during the imaging train would remain uncorrected. If large pose changes between TRs are detected, reacquisition of corrupted lines at the end of the scan could be considered. Nevertheless, the reduction of motion artifacts in high-resolution images without instructed motion underlines the strong potential of this approach for (ultra-)high-resolution imaging [6]. In the future, robustness against B0 changes could be increased by extending the model to include first-order shim terms [4], which may help to reduce parameter bias.

The clear reduction of motion artifacts in instructed motion experiments using servo navigation highlights its strong potential for motion correction, even in non-steady-state sequences such as MPRAGE and 3D-TSE.
Matthias SERGER (Bonn, Germany), Malte RIEDEL, Rüdiger STIRNBERG, Nicolas BOULANT, Klaas PRUESSMANN, Tony STÖCKER, Philipp EHSES
15:40 - 17:10 #47760 - PG461 Feasibility of self-navigated motion resolved 3D lung MRI on a non-commercial 100 mT system.
PG461 Feasibility of self-navigated motion resolved 3D lung MRI on a non-commercial 100 mT system.

Beyond standard spirometry methods for measuring global respiratory function, intensity-based and non-intensity-based proton MRI methods make it possible to map pulmonary dysfunction across the free-breathing lung [1-4] . At conventional magnetic field strengths these approaches require fast acquisitions to overcome inherently short T2* within the lung parenchyma. In contrast, at lower magnetic field strengths, longer T2* values reduce the need for short echo times [5]. The feasibility of an efficient 3D acquisition has been recently demonstrated at 0.55 T, with scan time of 5-minutes facilitated by high performance shielded gradients at 45 mT/m amplitude and 200 T/m/s slew rate [6]. In this study we investigate an alternative imaging regime, examining whether the inverse relationship between T2* and field strength can be used to mitigate the need for high gradient performance for lung imaging performed at low field. Using a non-commercial 0.1 T resistive whole-body scanner, we examine the feasibility of a 3D centre-out radial imaging approach using long readout times to minimise gradient strength and slew rate. We hypothesise that accurate motion resolved lung images can be obtained using gradient performance that is applicable to emerging ultra-low-field MRI technologies below 0.1 T [7-8].

Imaging experiments were performed using a non-commercial, 0.1 T resistive whole-body scanner, equipped with gradients capable of achieving a maximum amplitude of 16.5 mT/m and slew rate of 13.2 T/m/s (Fig. 1). A 3D unbalanced gradient echo sequence was used to acquire 60,000 centre-out radial trajectories, with TE/TR of 0.67/14 ms, voxel size of (3.1 x 3.1 x 3.1) mm3, AZTEK radial trajectory pattern of 1-twist, 1-shuffle, 4-speed [9], and scan time of 14 minutes. Experiments were performed at 4.293 MHz, and 128 readouts were acquired over 10.7 ms. Maximum gradient strength values for pre-phase, readout, and spoiling were 0.62, 0.36, and 5.69 mT/m respectively, with corresponding max slew rates of 3.09, 1.79, and 7.12 T/m/s. To examine efficacy for motion resolved imaging, data was collected from both a stationary and moving test phantom object, with the scanner bed manually displaced with an amplitude of 30 mm and approximate period of 5 s [9]. In addition, lung imaging was performed on two healthy volunteers instructed to follow consistent slow breathing patterns. Two consecutive acquisitions were performed to obtain a total of 120,000 radial trajectories during a 28-min scan time. A soft-gating approach was implemented and adapted to resolve 16 motion states based on processing of filtered magnitude DC signal variation [10]. For lung and phantom each motion state contained 20,000 and 15,000 radial trajectories respectively. A simple gridding-based reconstruction scheme was deployed using MATLAB, and the utility of the chosen AZTEK trajectory pattern to yield uniform coverage of k-space after soft-gating was quantified by uniform coverage metric [9]. Values ≥ 1 indicate as good or better coverage than randomised radial spoke distribution.

The periodic movement of the phantom and lung was observable as a periodic variation of the DC magnitude signal (i.e., the centre of k-space), and 16 motion states were resolved to separate inspiratory and expiratory phases (Fig. 2 – 3). A maximum displacement of (61.0 ± 1.8) mm was measured for the moving phantom (Fig. 4). A total displacement of (25.8 ± 1.8) mm and (17.6 ± 1.8) mm was measured between the inspiration and expiration images for each volunteer (Fig. 4). Use of the AZTEK trajectory pattern yielded uniform coverage of k-space across motion resolved states, with uniform coverage values of 1.01 ± 0.01 and 1.03 ± 0.01 for each volunteer scan.

Developing new ultra-low field MRI technologies that target specific applications is one solution towards addressing the challenge of MRI accessibility. Whilst the efficiency of MRI is dependent on accelerating acquisition of k-space, the feasibility of lung imaging at ultra-low field strength is further dependent on addressing the challenges of maximising inherently low values of SNR, field inhomogeneity [11], and minimising errors caused by limited gradient performance. In this study, relatively high values of T2* expected at low field were utilised to allow for longer sampling times and reduce demand on maximum gradient strength and slew rate. Future work will examine the efficacy of alternative imaging approaches to shorten acquisition time and the use of more advanced reconstruction approaches.

The feasibility of self-navigated motion resolved 3D lung imaging was demonstrated at 100 mT using gradient performance applicable to emerging ultra-low-field MRI technologies.
Nicholas SENN (Aberdeen, United Kingdom), Gabriel ZIHLMANN, Mathieu SARRACANIE, Najat SALAMEH
15:40 - 17:10 #47895 - PG462 Can PET acquisitions be shortened using an MR powered motion correction framework on a hybrid PET-MRI scanner?
PG462 Can PET acquisitions be shortened using an MR powered motion correction framework on a hybrid PET-MRI scanner?

In clinical practice, liver positron emission tomography (PET) scans often suffer from motion artifacts due to the extended acquisition time and the patient’s free-breathing state. These motion-induced distortions hinder accurate assessment of therapeutic response, necessitate high dose and long acquisition times to achieve sufficient dose deposition and hence SNR. In this study, we evaluate a shortened PET acquisition (3 minutes 2 seconds) combined with an MR powered 3D non-rigid motion correction framework for PET, leveraging non-rigid motion data derived from a simultaneously acquired, free-breathing T1 Dixon sequence. Our approach builds upon the methodology described in [1], with adaptations tailored specifically for liver imaging.

We acquired simultaneous PET and MR images while monitoring the patient's breathing through a respiratory cushion and the iNav in the T1 motion corrected sequence (Figure 1). Our processing starts by aligning temporally the raw PET and MRI data streams and truncating the PET data to match the MR acquisition during which the advanced motion monitoring using iNav[2] has been applied. Ultimately, the iNav data enables the calculation of detailed 3D motion fields of liver displacement throughout the respiratory cycle at 4 different states. Using a single attenuation map (μ-map) generated from a breath-hold sequence (Figure 2.A), we conduct a non-rigid registration between this static μ-map and the MR image (Figure 2.D), which has been resampled to align with the PET image. This step addresses potential misalignments caused by imperfect breath-holds or instances where the breath-hold position does not accurately reflect the expiration phase. The reversed motion fields (Figure 2.F) are now applied to the μ-map to generate μ-maps for each respiratory state (Figure 2.C), enabling precise attenuation correction across different respiratory states. Using the respiratory motion curve obtained from the iNav (Figure 2.G) and the truncated PET data (Figure 2.H), we now perform respiratory binning of the PET data based on the iNav respiratory signal (Figure 2.I). For each respiratory bin (Figure 2.I), we apply the motion-adjusted attenuation map (μ-map) (Figure 2.C) to enhance attenuation accuracy. The different attenuation-corrected PET images (Figure 2.J) are subsequently aligned to the expiratory state by applying the corresponding motion fields (Figure 2.G) to each bin. This leads to a summation of the different signals within the final resulting image (Figure 2.K). Details of the MRI protocol for imaging liver motion has been described previously [3]. In short, the iNav acquired between the T1 sequence blocks data enables the calculation of detailed 3D motion fields allowing us motion solve the image.

Figure 3 shows two 3-minute and 2-second PET scans: on the left, a scan obtained without motion correction (Figure 3.A), and on the right, a scan with motion correction (Figure 3.B). When comparing the signal ratio (tumoral liver)/(non-tumoral liver), we observe a 38% difference (6.1 for the motion-corrected PET image versus 4.4 for the non-corrected image). This suggests a clear reduction in noise within the non-tumoral liver tissue.

Our concept of using MRI iNAV for correcting PET images shows an improved PET signal, indicating that the motion correction framework effectively recenters the PET signal to its true origin in space. The gain is PET signal within the same acquisition time can – as usual – be played in different directions: firstly, it could be possible to reduce the dose while keep acquisition time, or shorten acquisition time and adjust accordingly dose to recover the same or improved SNR. This improvement in image quality suggests promising potential for more accurate characterization of tumors, intertumoral heterogeneity, potentially enhancing the understanding of therapeutic response and enabling more effective patient stratification. Currently, we are using only the truncated PET signal aligned with the MRI acquisition (see Figure 1). In the future, we plan to integrate respiratory PMU data from the raw PET signal, extending motion correction across the entire PET acquisition. This enhancement is expected to yield more precise results and improve the overall patient outcome.

In conclusion, we have developed an MRI-based PET motion correction pipeline for liver imaging that shows significant potential to enhance the quality of abdominal PET scans. This advancement paves the way for the next phase of our project, where we plan to extend the precise respiratory guidance provided by the iNAV across the entire PET acquisition period, allowing for even higher-quality images. Our novel PET motion correction framework for liver imaging holds promise for more streamlined patient care and earlier, more accurate treatment assessments
Jake PENNEY (Paris), Khalid AMBARKI, Patrick LEHMANN, Aurélien MONNET, Ricardo SARTORIS, Valerie VILGRAIN, François ROUZET, Kaya DOYEUX, Hatem NECIB, Rene BOTNAR, Claudia PRIETO, Ralph SINKUS
15:40 - 17:10 #47915 - PG463 Reducing motion artefact in high resolution 7T scans using MR MinMo a new head stabilization device.
PG463 Reducing motion artefact in high resolution 7T scans using MR MinMo a new head stabilization device.

High-resolution brain MRI at 7T can significantly improve the detection of pathology[1]. However, motion sensitivity is enhanced due to the increased resolution and scan duration hence even small movements may produce visible artifacts. We therefore aimed to evaluate the effectiveness of the MR MinMo (MR Minimal Motion) head stabilization device[2] in mitigating motion artifacts for high-resolution 7T scans. To reduce artifacts, retrospective motion correction can also be effective, but it is made more challenging by concomitant interactions with the B0 field[3] and B1 field[4] that are increased at 7T and difficult to correct for larger movements. We therefore additionally tested if there was a synergistic interaction between the use of a retrospective motion correction method called DISORDER[5] and the MR MinMo. Finally, we examined T2* maps as an application with high sensitivity to bulk head and physiological motion at 7T.

The MR MinMo (Fig1A) is designed to reduce motion in awake subjects aged 6 and older. During the experimental setup, the device was seated into the head coil in the open configuration and participants were position in the MR MinMo. 19 healthy volunteers (7 paediatric aged 10-15yrs, 12 adults aged 20-36yrs) comprising 10 males and 9 females were imaged sequentially with the MR MinMo and standard padding. The order of using MR MinMo versus standard padding was randomized to offset potential order effects[6]. A 2×2 factorial design (Fig1B) was used to evaluate the MR MinMo in four experimental conditions: A1) MR MinMo with linear sampling, A2) MR MinMo with DISORDER sampling and motion correction B1) standard padding with linear sampling and B2) standard padding with DISORDER sampling and motion correction. Data was acquired using an optimized multi-echo GRE protocol[7] (FA=36°, TR=30ms, TE1-TE10=2.27-26.39ms, BW=470Hz/px) at 0.6mm³ resolution with FOV=256×173×218mm³. Two sampling paradigms were employed:1) a 10-minute scan with linear Cartesian sampling (IPAT=2×2, acceleration factor=4), and 2) a 20-minute scan using DISORDER sampling (acceleration factor=1.4x1.4), where k-space samples are acquired in a pseudo-random order from rectangular regions (Fig1B). Images were assessed qualitatively by visual inspection of the 1st echo and the T2* map calculated from all echoes and quantitatively using the normalized gradient squared (NGS) metric [8] within a whole-brain ROI. Statistical analysis was performed using a repeated measures ANOVA and T-tests. HV's motion states were estimated within the DISORDER framework with translation and rotation values calculated across orthogonal directions. Maximum values of motion were derived across states then averaged by group(adult vs children).

The MR MinMo reduced motion artifacts irrespective of sampling type. Fig2A-B show images demonstrating improved image quality for Mr MinMo using linear sampling. Fig3A-B show the same for DISORDER sampling with and without motion correction. Motion state analysis showed paediatric subjects exhibited substantially higher motion without the MR-MinMo compared to adults. For children vs adults, group average of the max. translation was 0.26mm vs 0.09mm and for rotation 0.15° vs 0.04°. The NGS values are shown in Fig.4, a significant main effect of using the MR MinMo (p=0.002) was found. A paired t-test confirmed that retrospective correction was effective in improving the quality of the DISORDER sampled scans. However, these were not significantly better than the linear sampled equivalents (p=0.48). A significant interaction was found between the MR MinMo and DISORDER motion corrected scans (p=0.02). An interaction between MR MinMo and age (p=0.02) suggested greater efficacy in children who generally exhibited more motion. T2* maps calculated from linear sampled echoes showed improved uniformity and reduced motion corruption with the MR MinMo (Fig2C).

The MR MinMo demonstrated a significant improvement in image quality both with and without retrospective motion correction demonstrating its potential to work synergistically with other motion correction approaches. We speculate that this is because the reduced motion range may lead to greater data consistency with algorithmic assumptions. As expected, younger subjects tended to move more as measured using the estimated motion states. The randomization of scan order across subjects ensured that any increase in motion prevalence with total exam duration [6] did not affect results. This approach also doesn't require additional hardware or custom manufacturing, making it suitable for routine use.

The MR MinMo is an effective solution for reducing motion and increasing image quality in high resolution 7T scans. The device is compatible with and may improve the performance of retrospective motion correction methods.
Jyoti MANGAL (London, United Kingdom), Simon RICHARDSON, Yannick BRACKENIER, Matthew GARDNER, Pierluigi DI CIO, Chiara CASELLA, Shaihan MALIK, Jo HAJNAL, Martina CALLAGHAN, Fred DICK, David CARMICHAEL
15:40 - 17:10 #47647 - PG464 Monitoring head exposure around a 14.1 T preclinical MRI scanner using smart goggles equipped with magnetometers.
PG464 Monitoring head exposure around a 14.1 T preclinical MRI scanner using smart goggles equipped with magnetometers.

Throughout their workday, the staff operating MRI equipment are continually subjected to its electromagnetic fields, which include static field, radiofrequency (RF) emissions, and gradient fields. Exposure to static magnetic fields (SMF/B0) is known to cause several effects, such as a metallic taste in the mouth, nausea, nystagmus, and vertigo [1]. Gradient fields have the potential to stimulate peripheral nerves, whereas RF signals are primarily associated with heating of body tissues [2]. This research work emphasizes only the exposure to SMF, which is commonly assessed using portable exposimeter currently available [3]. These exposimeters are typically attached to the chest, leading to a notable difference between the magnetic field measurements, and the magnetic field levels experienced at the head level. Moreover, the variance in movement between the chest and the head adds complexity to the analysis of gradients related to motion around the magnet. In response to this complexity, we have developed smart goggles equipped with multiple magnetic field sensors over the past few years [4-5]. These smart goggles offer greater accuracy compared to pocket exposimeters and are designed to be performant and comfortable enough to make them suitable for studies involving cohorts of MRI workers working with different scanners.

The smart goggles used in this work have been presented in [5]. It features ten sensors at locations near the ears, the temples, and the eyes. The goggles feature the SENM3Dx sensors (Senis AG), capable of measuring ± 4 T on each axis (Fig.1). The exposimeter samples magnetic field signals at 47 Hz and is connected to a non-ferromagnetic battery powered data logger that stores data on an SD card. In the subsequent measurements, the magnetic field norm B is determined using the Euclidean norm. The slew rate is computed individually for each of the sensors by taking the time derivative (i.e., dB/dt) of B. The gradient is calculated as the difference between the norms of two opposing sensors located near each temple, assuming a distance of 17.5 cm between the sensors (Fig.1). For this work, the volunteer researcher moved around a 14.1 T preclinical scanner (Varian, Burker). He was tasked to carry out routine activities in the MRI room. These activities involved simulating the setup of a head antenna, which entails bending down and looking into the bore with the head roughly aligned with the center of the bore at its entrance (Fig.2), as well as moving around the scanning bed.

The findings from the measurements are illustrated in Fig.3. The data reveals that the measured magnetic field norms reached a maximal value of 2.3 T. The observed slew rates peaks at -3.7 T/s. Additionally, the maximum calculated gradient field was determined to be 2.3 T/m. These results indicate that during these measurements, exposure levels surpassed the thresholds of 2 T, and 2.7 T/s established by the laboratory-related safety hazards directive 2013/35/EU [6].

Preclinical MRI workers are exposed daily to high static magnetic fields, yet the origin of the physiological effects of such exposure remain largely unstudied. In this study, we have highlighted the significant magnetic field dynamics encountered by these workers as they move around a preclinical scanner operating at 14.1 T. By involving a substantial number of participants who interact with various MRI models and protocols, we aim to gain deeper insights into the physiological impacts of exposure to B0 generated by MRI scanners. Conducting broad investigations will be crucial for understanding the mechanisms that lead some individuals to experience SMF-related effects. In the long term, these studies could pave the way for defining new safety recommendations specifically tailored for individuals subject to these effects, ensuring better protection for MRI workers.

In this study, we used the smart goggles developed in [5] to focus on SMF exposure of preclinical MRI workers. In the preclinical context, the magnetic fields are often stronger than those encountered in clinical settings, although the MRI bores are significantly smaller. Our objective was to assess whether their exposure levels were comparable to those we had previously measured [5]. This is the case and the measured exposure levels can exceed recommended thresholds. The results obtained are similar to those observed for a 7 T whole-body MRI scanner, which does not have any counter-field coils. Further investigations will be necessary to understand the mechanisms that cause some individuals to experience SMF-related effects. Prior to these further investigations, we plan to enhance the ergonomy and user-friendliness of the exposimeter.
Thomas QUIRIN, Hugo NICOLAS, Corentin FÉRY, Nicolas WEBER, Julien OSTER, Jacques FELBLINGER, Joris PASCAL (Muttenz, Switzerland)
Poster hall
17:10 TIME FOR A BREAK - Coffee and refreshments will be available at the cash bar.
17:30

"Friday 10 October"

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A26
17:30 - 18:30

HOT TOPIC ROUND TABLE
Are we redundant? The future of radiology professions

Chairpersons: Patricia CLEMENT (Postdoctoral researcher) (Chairperson, Ghent, Belgium), Francesco SANTINI (Chair) (Chairperson, BASEL, Switzerland)
17:30 - 18:30 Survival strategies for MR physicists. Moritz ZAISS (Professor) (Keynote Speaker, Erlangen, Germany)
17:30 - 18:30 Survival strategies for radiographers. Jonathan  MCNULTY (Keynote Speaker, Dublin, Ireland)
17:30 - 18:30 Survival strategies for radiologists. Marion SMITS (Keynote Speaker, Rotterdam, The Netherlands)
Auditorium 900
18:30 POSTER DRINKS