Sunday 28 August
15:30

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SSW1
15:30 - 18:00

Special Scientific Workshop Big data
Big Data in Microscopy

Chairpersons: Nick SCHRYVERS (Chairperson, Antwerpen, Belgium), Roger A. WEPF (Chairperson, Zürich, Switzerland)
15:30 - 15:35 Welcome & Introduction. Nick SCHRYVERS (Chairperson, Antwerpen, Belgium), Roger A. WEPF (Chairperson, Zürich, Switzerland)
15:35 - 15:50 OME's Bio-Formats & OMERO; Open Source Tools for Image Data Management, Sharing and Analysis @ Scale. Sebastien BESSON (Keynote Speaker, United Kingdom)
15:50 - 16:05 First steps towards big data in Electron Microscopy: open data. Andy STEWART (Senior Research Fellow) (Keynote Speaker, Limerick, Ireland)
16:05 - 16:20 Large Data: Fast to Find, Quick to View. Patrick SCHWARB (Keynote Speaker, Switzerland)
16:20 - 16:35 Sharing microscopy images and processing applications. Jean SALAMERO (Keynote Speaker, PARIS, France)
16:35 - 16:50 Centralized computing and storage in a large decentralized microscopy environment. Urs ZIEGLER (Keynote Speaker, Zurich, Switzerland)
16:50 - 17:20 Data Management at CERN's Large Hadron Collider: experiences on handling large data from the source to the storage and processing in a large consortium of scientists. Dirk DUELLMANN (Keynote Speaker, Genève, Switzerland)
17:20 - 18:00 Panel discussion.
Roger Wepf, Nick Schryvers, Sebastien Besson (UK), Andy Stewart (IE), Patrick Schwarb, Maria Marosvölgyi, Jean Salamero (F), Urs Ziegler (CH)
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PL1
18:00 - 19:00

Plenary Lecture 1

18:00 - 19:00 Plenary lecture 1. Bram KOSTER (Plenary Speaker, The Netherlands)
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Monday 29 August
08:00

"Monday 29 August"

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OC
08:00 - 09:00

Opening Ceremony

08:00 - 08:10 EMC 2016 President. Thierry EPICIER (Keynote Speaker, LYON, France)
08:05 - 08:10 EMC 2016 Vice-President. Pascale BAYLE-GUILLEMAUD (Keynote Speaker, GRENOBLE, France)
08:10 - 08:20 In the name of Laurent Wauquiez, President of Région Auvergne Rhône Alpes. Nora BERRA (Keynote Speaker, France)
Former ministry
08:20 - 08:30 UDL President. Khaled BOUABDALLAH (Keynote Speaker, France)
08:30 - 08:35 EMS President. Roger A. WEPF (Keynote Speaker, Zürich, Switzerland)
08:35 - 08:40 Sfμ President. Guy SCHOEHN (Keynote Speaker, Grenoble, France)
08:40 - 08:50 For the Institut Lumière. Philippe OUDOT (Keynote Speaker, lyon, France)
08:50 - 09:00 Honorary Fellowship of the RMS Award. Peter NELLIST (Professor of Materials) (Keynote Speaker, Oxford, United Kingdom)
RMS President
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PL2
09:00 - 10:00

Plenary Lecture 2

09:00 - 10:00 Plenary Lecture 2. Eric BETZIG (Plenary Speaker, USA)
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10:30

"Monday 29 August"

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IM2-I
10:30 - 12:30

IM2: Micro-Nano Lab and dynamic microscopy
SLOT I

Chairpersons: Francisco José CADETE SANTOS AIRES (Chairperson, VILLEURBANNE CEDEX, France), Niels DE JONGE (Chairperson, Saarbrücken, Germany), Gerhard DEHM (Chairperson, Düsseldorf, Germany)
10:30 - 11:00 Following nanomaterial dynamics in their formation and application media with liquid-cell transmission electron microscopy. Damien ALLOYEAU (CNRS scientist) (Invited speaker, LMPQ, Paris Diderot, France)
Invited - Last minute change
11:00 - 11:15 #4756 - IM02-OP054 Oxidation of Carbon Nanotubes Using Environmental TEM and the Influence of the Imaging Electron Beam.
Oxidation of Carbon Nanotubes Using Environmental TEM and the Influence of the Imaging Electron Beam.

Carbon nanotubes (CNTs) can be used as field emission electron sources in X-ray tubes for medical applications [1, 2]. In a laboratory setting, field emission measurements of CNTs are usually carried out in an ultra-high vacuum system with base pressure of about 1E-7 mbar or better. Under less stringent vacuum conditions, CNTs are found to exhibit lower emission currents and reduced lifetimes [3, 4].

 

Here, we report the direct study on the structural changes in CNTs as we heated and oxidized them in situ using an aberration-corrected environmental TEM [5].  We established a protocol whereby heating and oxidation were performed without an imaging beam and changes on identifiable nanotubes were documented after purging the gas from the chamber, to ensure that they were due to the effect of gaseous oxygen molecules on the nanotubes, rather than the ionized gas species [5].  Contrary to earlier reports that CNT oxidation initiates at the end of the tube and proceeds along its length, our findings show that only the outside graphene layer is being removed and, on occasion, the interior inner wall is oxidized, presumably due to oxygen infiltrating into the hollow nanotube through an open end or breaks in the tube [5].  The CNT caps are not observed to oxidize preferentially [5, 6].

 

In the environment of an ETEM, interaction between fast electrons and gas leads to ionization of gas molecules and increased reactivity. It is very important to evaluate the results to determine or ameliorate the influence of the imaging electron beam. We found that there is a two orders of magnitude difference in the cumulative electron doses required to damage carbon nanotubes from 80 keV electron beam irradiation in gas versus in high vacuum [7]. We anticipate that experimental conditions that delineate the influence of the imaging electron beam can be established, which will enable us to study the CNT field emission process in situ in an ETEM.

 

[1]. G. Cao et al., Med. Phys. 37 (2010), pp. 5306–5312.

[2] X. Qian et al., Med. Phys. 39 (2012), pp. 2090–2099.

[3] K. A. Dean and B. R. Chalamala, Appl. Phys. Lett. 75 (1999), pp. 3017–3019.

[4] J.-M. Bonard, et al., Ultramicroscopy 73 (1998), pp. 7–15.

[5] A. L. Koh et al., ACS Nano 7(3) (2013), pp. 2566–2572.

[6] R. Sinclair et al., Advanced Engineering Materials 16(5) (2014), pp. 476-481.

[7] A. L. Koh et al., Nano Lett. 16(2) (2016), pp. 856-863.

[8] The authors acknowledge funding from the National Cancer Institute grants CCNE U54CA-119343 (O.Z.), R01CA134598 (O.Z.), CCNE-T U54CA151459-02 (R.S.) and CCNE-TD #11U54CA199075. (R.S.)   Part of this work was performed at the Stanford Nano Shared Facilities.


Ai Leen KOH (Stanford, USA), Emily GIDCUMB, Otto ZHOU, Robert SINCLAIR
11:15 - 11:30 #5548 - IM02-OP057 Nucleation of Graphene and its Conversion to Single Walled Carbon Nanotube revealed.
Nucleation of Graphene and its Conversion to Single Walled Carbon Nanotube revealed.

During catalytic chemical vapor deposition, the chirality of single wall carbon nanotubes is determined when the growing graphene nucleus wraps around the catalyst and converts into a tubular structure. Elucidating this critical process is required to develop deterministic bottom-up strategies aiming at better chiral distribution control. Direct observations of carbon nanotube growth, and theoretical modeling and simulations of the nucleation have been published but experimental atomic-resolution evidence of single-walled carbon nanotube nucleation has, until now, eluded us.

The main obstacle is that nucleation involves a few atoms only and a short time scale, thus requiring a combination of high spatial and temporal resolution for direct observation. Here, we overcome the temporal resolution constraint by reducing the growth rate in order to match the temporal resolution of our recording medium. We employ an environmental scanning transmission electron (ESTEM), equipped with an image corrector and a digital video recording system, to follow SWCNT growth using Co-Mo/MgO catalyst and acetylene (C2H2) as a carbon source (see Methods). We present atomic-resolution movies that reveal the nucleation of graphene on cobalt carbide nanoparticles followed by its transformation to a single-walled carbon nanotube. We find that the surface termination of the faceted catalyst nanoparticles regulates the nucleation of the graphene sheet and its conversion into a nanotube. Additional density functional theory calculations show that the disparity in adhesion energies for graphene to different catalyst surfaces is critical for nanotube formation: strong work of adhesion provides anchoring planes for the tube rim to attach, while weak work of adhesion promotes the lift-off of the nanotube cap (Fig. 1). [1]

[1] Nucleation of Graphene and Its Conversion to Single-Walled Carbon Nanotubes. Nano Letters. 2014, 14, 6104−6108


Matthieu PICHER (Strasbourg), Ann Lin PIN, Jose L. Gomez BALLESTEROS, Perla BALBUENA, Renu SHARMA
11:30 - 11:45 #6776 - IM02-OP074 In-situ TEM growth of single-layer boron nitride dome-shaped nanostructures catalysed by iron clusters.
In-situ TEM growth of single-layer boron nitride dome-shaped nanostructures catalysed by iron clusters.

We report on the growth and formation of single-layer boron nitride dome-shaped nanostructures mediated by small iron clusters located on flakes of hexagonal boron nitride. The nanostructures were synthesized in situ at high temperature inside a transmission electron microscope while the e-beam was blanked (Figure 1). The formation process, typically originating at defective step-edges on the boron nitride support, was investigated using a combination of transmission electron microscopy, electron energy loss spectroscopy and computational modelling. The h-BN dome-shaped nanostructure of Figure 1 was used to simulate images of BN protrusions at various angles relative to the incident electron beam, by adjusting effectively the beam direction. Figures 2 presents simulated images for beam angles of 0° (2a), 30° (2b,c) and 50° (2d), respectively, relative to the h-BN plane normal, in comparison with experimentally observed features (Figures 2e-h). The image simulations are in striking agreement with the experimental images, consistent with the circular features being protrusions formed normal to the h-BN plane, whilst the hemispheres correspond to protrusions tilted with respect to the h-BN plane.  Computational modelling showed that the domes exhibit a nanotube-like structure with flat circular caps (Figure 3) and that their stability was comparable to that of a single boron nitride layer.

       Nanostructured carbon protrusions have been studied since 2001 [1-3], but the investigation of analogous BN structures has only just begun. In the present study, we have shown that even member rings are required for the formation of h-BN dome-shaped protrusions, but not in the form of active linear defects, containing B-B and N-N bonds, as observed recently in BN monolayers under electron beam irradiation [4]. Furthermore, according to our molecular simulations result the even members rings present in the half dome structure present B-B and N-N bonds (Figure 4). The BN dome-shaped nanostructures represent a new material that perhaps by hosting metal atoms may unveil new optical, magnetic, electronic or catalytic properties, emerging from confinement effects.

[1] Sharma, R.; et al. Journal of Electron Microscopy 2005, 54, 231-237.

[2] Chamberlain, T. W.; et al. Nature Chemistry 2011, 3, 732-737

[3] Nasibulin, A. G.; et al. Nature Nanotechnolgy2007, 2, 156-161.

[4] Cretu, O.; et al Nanoletters2014, 14, 1064-1068. 


A. LA TORRE (Nottingham, United Kingdom), E. H. ÅHLGREN, M. W. FAY, F. BEN ROMDHANE, S. T. SKOWRON, A. J. DAVIES, C. PARMENTER, J. JOUHANNAUD, A. N. KHLOBYSTOV, G. POURROY, E. BESLEY, P. D. BROWN, F. BANHART
11:45 - 12:00 #6199 - IM02-OP064 Structural changes of Au nanocones during in situ cold-field emission observed by high-resolution TEM.
Structural changes of Au nanocones during in situ cold-field emission observed by high-resolution TEM.

In situ transmission electron microscopy (TEM) allows imaging on the atomic scale of complex physical phenomena, which are induced by an externally applied stimuli. This provides a directly observed correlation between material structure and properties, which promotes the understanding of the material and the triggered phenomena. Here, a Nanofactory in situ TEM biasing holder with a nanomanipulator has been used to both manipulate Au nanostructures and also to enable the studies of electron cold-field emission (CFE).

The conical shaped Au nanostructures are produced by hole-mask colloidal lithography on an electron-transparent carbon film in macroscopic short-range-ordered arrays [1]. Individual nanocones typically feature a tip radius of around 5 nm and a height of around 180 nm. The entire macro-array is then transferred to a mechanically cut Au-wire that subsequently was inserted into the in situ TEM holder (Fig. 1).

The nanomanipulator of the TEM holder can move in 3D, with both coarse and fine motion. The coarse control utilizes a slip-stick mechanism for a mm-ranged motion. The piezo-driven fine control has a range of 10 μm and a resolution on the sub-Å level. The Au nanocones in Fig. 1 were transferred to the nanomanipulator, making the configuration seen in Fig. 2. The nanomanipulator was thereafter positioned opposite a nanocone that was in direct contact with the Au-wire (Fig. 2). During the experiment, the electrical potential between the two cones was increased until the electric field around the cathode nanocone was sufficiently high (several volts per nm) to initiate CFE.

Earlier work using a similar TEM holder reports about in situ CFE experiments using carbon-based nanotips over a distance of a few hundreds of nanometer [2-4]. Here, the distance between the two Au nanocones is around 20 nm, allowing for simultaneous imaging at high resolution of both cones during CFE. This allows a better understanding of the CFE process and the effects of electron bombardment. 

At 115 V applied voltage with a CFE current, ie, of 4 μA, structural changes of the anode Au nanocone were observed. The change in structure started with a faceting at the apex of the anode nanocone. At the same time, the anode nanocone material was redistributed forming an elongated structure, making the anode nanocone thinner over a region that stretched over more than 30 nm from the tip towards the base. The elongation was a multi-stage process, taking about 5 s to complete. See images in Figs. 3a and 3b, which are separated by 0.4 s.

The electron bombardment current was kept in the μA-range and resulted in an amorphization of the outmost atomic layers of the anode apex around 7 s after the structural changes of the nanocone had occurred.

During these events, no structural changes were observed on the cathode. This indicates that the structural changes to the anode Au nanocone is an effect of electron bombardment by the emitted and accelerated electrons.

[1]      H. Fredriksson, Y. Alaverdyan, A. Dmitriev, C. Langhammer, D. S. Sutherland, M. Zäch, and B. Kasemo, Adv. Mater. 19, 4297 (2007).

[2]      L. de Knoop, F. Houdellier, C. Gatel, A. Masseboeuf, M. Monthioux, and M. J. Hÿtch, Micron 63, 2 (2014).

[3]      L. de Knoop, C. Gatel, F. Houdellier, M. Monthioux, A. Masseboeuf, E. Snoeck, and M. J. Hÿtch, Applied Physics Letters 106, 263101 (2015).

[4]      F. Houdellier, L. de Knoop, C. Gatel, A. Masseboeuf, S. Mamishin, Y. Taniguchi, M. Delmas, M. Monthioux, M. J. Hÿtch, and E. Snoeck, Ultramicroscopy 151, 107 (2015).


Ludvig DE KNOOP (Gothenburg, Sweden), Norvik VOSKANIAN, Andrew YANKOVICH, Kristof LODEWIJKS, Alexandre DMITRIEV, Eva OLSSON
12:00 - 12:15 #6859 - IM02-OP077 Shape transformations during the growth of gold nanostructures.
Shape transformations during the growth of gold nanostructures.

Liquid cell transmission electron microscopy (LCTEM) has rapidly emerged as a potent tool for understanding the dynamical processes taking place at solid / liquid interfaces. Imaging colloidal solutions with the high temporal and spatial resolutions of TEM enables understanding the growth mechanisms that control the final size and morphology of nanoparticles. Nevertheless, conclusive LCTEM experiments require understanding the effects of electron-irradiation on the nanoscale phenomena under study. Radiolytic syntheses driven by the electron beam were performed in this work to study the effects of the dose history (including the instantaneous dose rate and the cumulative dose) and the solvent nature on the shape of gold nanoparticles. The straightforward control over the concentration of reducing agents (radiolytically-produced hydrated or solvated electrons) provides mechanistic insights on the growth of highly desired nanocrystal shapes for plasmonic applications.

 

Liquid cell experiments were carried out on an aberration corrected JEOL ARM 200F operated at 200KV, by using a commercial liquid-cell holder provided by Protochips Inc. 1mM HAuCl4 in water or methanol was analyzed in a 150 nm-spacer liquid cell. Growth experiments were conducted under two extreme regimes of dose rate (over 150 electrons/Å2s and below 1 electrons/Å2s) in both TEM and STEM modes.     

 

Under high dose rate we observed the growth of dendritic nanostructures (Fig. 1a). By comparing LCTEM observations with an extended diffusion-limited aggregation model (Fig. 1b), we explicitly reveal the molecular and atomic diffusion processes that impact the shape of these dendritic nanostructures.[1] Besides the well-established link between the dose rate and the growth speed of the nanostructures,[2,3] we have demonstrated that the cumulative dose in the irradiated area can also induce drastic transitions in the growth mode of the nanostructures. For instance, high dose rate observation severely affects the concentration of precursors in and around the irradiated area, resulting in the formation of anisotropic tree-like structures over spherical nanoparticles (Fig. 1a).

 

Under low dose rate, reaction-limited growth leads to the formation of highly facetted nanoclusters. The growth is then dominated by thermodynamic effects, because the lower adsorption rate of gold atoms provides enough time for the clusters to reach an equilibrium shape that depend on intrinsic and extrinsic parameters.[3] We show that crystal defects (intrinsic parameter) or the nature of the solvent that modulates the surface energies of crystal facets (extrinsic parameters) can both drive shape transformations during the growth of the nanoparticles. Remarkably, we reveal the formation mechanisms of highly symmetric 2D and 3D nanostars enclosed by high-index facets. . These in situ studies could help in designing new seed-mediated methods or capping strategies to fabricate metallic nanostars. 

      

[1] Ahmad et al. Advanced structural and chemical imaging, submitted (2016).

[2] Woehl et al. ACS nano, 10, 8599 (2012).

[3] Alloyeau et al. Nanoletters, 15, 2574 (2015).


Nabeel AHMAD (Paris), Christian RICOLLEAU, Yann LE BOUAR, Damien ALLOYEAU
12:15 - 12:30 #6667 - IM02-OP072 Analysis to reveal dynamical and correlated atomic displacements on gold surfaces depending on various environments.
Analysis to reveal dynamical and correlated atomic displacements on gold surfaces depending on various environments.

     Gold has a wide range of important applications, such as gold nanoparticles (AuNPs) for catalyst and various gold nanostructures for sensing technology. For the applications, it is necessary to understand the chemical reaction on gold surface in actual environments, at atomic resolution, and at high time resolution. Though gold is chemically stable, it is known that the supported AuNPs of the size smaller than about 5 nm exhibit higher catalytic activity. This partially originates from the small curvature of nanoparticle surfaces, so the gold surface structures such as facets, edges and corners could change in certain environments. Here, we analyze in-situ images of the surface of bulk gold with different curvatures that are acquired using spherical aberration (Cs)-corrected environmental transmission electron microscopy (ETEM) to derive dynamical and correlated atomic displacements in various environments.

     TEM characterization is carried out by Cs-corrected Titan ETEM G2 apparatus [1], where the accelerating voltage is 300 kV. Figure 1 shows the (E)TEM images of the gold surface with relatively small curvature in various environments (vacuum, oxygen, hydrogen, and nitrogen). In vacuum, the facets of {100} and {111} and the step edge are seen clearly. In contrast, the gold surface is rough in oxygen (oxygen partial pressure: PO2 = 100 Pa), where the surface gold atoms move continuously. In hydrogen and nitrogen (PH2, PN2 = 100 Pa), the surface is facetted as well as that in vacuum and the gold atoms hardly move on the surface.

     To shed light on the change of the gold surface in oxygen, we further investigated the dynamics of surface gold atoms in oxygen by high resolution in-situ ETEM observation with an advanced image acquiring system (Figure 2). By tracking the individual gold atoms in time-lapse images, we found that gold atoms at the step edge readily migrate on the surface compared to those of the terrace surface. We further found that as the oxygen partial pressure decreases, the gold surface becomes more stable structure. We also investigated the electron irradiation effect behind the dynamical changes of surface structures in gas environments, where the current density of the electron beam is varied from 25 A/cm2 to 0.1 A/cm2. As the current density of the electron beam decreases, the migration of the gold atoms in the surface moderates. The gold surface remains rough even in the very small current density of 0.1 A/cm2. Though the electron beam affects the structural changes of the gold surface in oxygen, the analysis result suggests that the surface of bulk gold could interact with oxygen gas molecules to some extent regardless of the electron beam.

     The dynamic surface structures of metals in actual environments most likely originate from the interaction between gas molecules and metal atoms on the surface. Full understanding of the dynamical behavior of metal surface in various environments crucially important for application to the nanomaterials and nanodevices. To this end, it is useful to detect the behavior of individual metal atoms at higher temporal resolution with high detection efficiency of electrons in atomic resolution ETEM. We have already successful in capturing the extraordinary atomic migration on gold surfaces by advanced in-situ Cs-ETEM. We will show some movies in our presentation that show the dynamics of individual surface gold atoms in various environments by time resolution better than 50 ms.


Reference

[1] S. Takeda, Y. Kuwauchi, H. Yoshida, Ultramicroscopy, 151 (2015) 178.


Ryotaro ASO (Ibaraki, Japan), Yohei OGAWA, Hideto YOSHIDA, Seiji TAKEDA
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IM1-I
10:30 - 12:30

IM1: Tomography and Multidimensional microscopy
SLOT I

Chairpersons: Sara BALS (Chairperson, Antwerpen, Belgium), Wolfgang LUDWIG (Chairperson, Lyon, France), Sergio MARCO (Chairperson, Paris, France)
10:30 - 11:00 #8328 - IM01-S31 Determining atomic coordinates in 3D by atomic electron tomography.
Determining atomic coordinates in 3D by atomic electron tomography.

At a basic level, materials properties depend on the three-dimensional arrangement of atoms, and it is necessary to determine their coordinates to make correlative measurements of structure and functionality from basic principles. Traditional 3D reconstruction techniques (such as X-ray crystallography and single-particle Cryo-Em) continue to provide critical insights into structure/property relationships but average over many identical structures. This will blur out the defects inherent to inhomogeneous nanoengineered materials important to their functionality. Aberration-corrected HR-TEM and HAADF-STEM are now indispensable techniques in materials science to examine the atomic structure of materials systems with sub-Å resolution and single atom sensitivity. Combining these new tools with powerful iterative 3D reconstruction and peak finding algorithms for electron tomography is opening a new field with the ability to determine atomic coordinates of all atoms in a structure without the assumption of crystallinity. This talk will cover recent develops and future directions of Atomic Electron Tomography (AET), which will be critical to our understanding of the atomic structure of complex materials systems.
HAADF-STEM and the equally sloped tomography method were recently used to determine the atomic coordinates of 3,769 atoms in 9 atomic layers at the apex of an etched tungsten needle (Figure 1) [1]. A tungsten point defect was unambiguously located in the material for the first time in three-dimensions. Comparing the experimental positions to the ideal bcc tungsten lattice produces the atomic displacement field with ±19 pm precision. Kernel density estimation applied to the differentiation of the displacement field was used to calculate the 6 components of the strain tensor with ~1 nm 3D spatial resolution indicating expansion along the [011] axis (x-axis) and compression along the [100] axis (y-axis). It was determined by experiments, DFT simulations and MD simulations that the strain in the lattice was due to a surface layer of tungsten carbide and sub-surface carbon. This result shows the capabilities of AET to measure atomic coordinates of inhomogeneous objects without the assumption of crystallinity providing and the capability of directly measuring materials properties.
Measurements of material structure in their native environment are now being accomplished using in-situ TEM, but has been limited by the thickness of the SiN windows and the contained liquid volume. A recent advance in this field was the introduction of the graphene liquid cell (GLC) to minimize the combined window/liquid thickness allowing observation of the growth and coalescence of colloidal Pt nanoparticles at atomic resolution [2]. It was discovered that stable NPs in the GLC were randomly rotating thus providing many orientations that could be reconstructed using methods developed in single-particle Cryo-Em. A direct electron detector and aberration-corrected HR-TEM were combined with a GLC in a technique called 3D SINGLE (3D Structure Identification of Nanoparticles by Graphene Liquid Cell EM) to determine the atomic-scale facets, lattice plane orientations and multi-twinned grain structure of a Pt nanoparticle in liquid with 2.10 Å resolution (Figure 2) [3]. The particle is constructed of three distinct regions: a central disk region of well-ordered {111} atomic planes with conical protrusions attached on each side connected by screw dislocations.
[1] Xu, R. et al., Nat Mater, 14, 1099–1103 (2015).
[2] Yuk, J. M. et al., Science, 336, 61–64 (2012).
[3] Park, J. et al. Science, 349, 290–295 (2015).


Peter ERCIUS (Berkeley, USA), Rui XU, Chien-Chun CHEN, Li WU, Mary SCOTT, Wolfgang THEIS, Colin OPHUS, Jungwon PARK, Hans ELMLUND, Alex ZETTL, A. Paul ALIVISATOS, Jianwei MIAO
Invited
11:00 - 11:15 #6438 - IM01-OP047 Environmental Transmission Electron Tomography: fast 3D analysis of nano-materials.
Environmental Transmission Electron Tomography: fast 3D analysis of nano-materials.

Modern environmental Transmission Electron Microscopes (ETEM) enables chemical reactions to be directly observed with new perspectives in the operando characterization of nano-materials. However, morphological features are essentially missing in 2-dimensional observations, thus nano-tomography under environmental conditions is a new promising challenge. Obviously, the essential condition to achieve this goal is to run fast tilt series acquisitions as compared to the kinetics of the reactions which are followed in situ in the microscope. This contribution will show that such experiments are possible by comparing the volumes respectively obtained from a classic or a fast tilt series acquisition in the bright field mode.

Firstly, simulations were performed on ghost models in order to appreciate the influence of the goniometer rotation speed during image acquisition on quality of images (sharpness and blurring effects). A typical micrograph of a nano-object, e.g. metallic nanoparticles encaged into mesoporous silicalites, was used to reconstruct a 2D model. The 1D projections were calculated according to different conditions intending to reproduce the effects of a continuous tilt during the acquisition. Figure 1 a-c) show the models at zero tilt projected perpendicularly to the tilt axis marked by a cross (the vertical direction is the projection direction); in a), a fixed image is shown as obtained at a given rotation; it is compared to images simulated by integrating a blur effect to a rotation of 3° during the acquisition, either whit a centered (b) or not centered rotation axis (c). To give an order of magnitude, a 120° rotation performed in 1 minute with acquisition of images every second without interrupting the rotation leads to an angular blur of only 2° in each image. From the 1D projection series (not shown here), 2D reconstructions were calculated using the simple Weighted-Back Projection (WBP) algorithm. Results from fig. 1 d-e) show that, at least in the case of nanoparticles with strong absorption contrast as presented here, the tomograms obtained from the blurred series are not significantly different from the constructed volume obtained from the conventional step-by-step acquisition scheme.

In a second step, we performed experimental nano-tomography experiments on Pd/Al2O3 samples deposited on holey carbon grids. Volume reconstructions shown in Fig.2 were obtained from the same object using two bright field tilt series acquired in a FEI Titan-ETEM microscope operated at 300 kV and equipped with a dedicated Fischione high-tilt sample holder. The first one was acquired through a classical step by step tilt series acquisition from 74° to + 66° with a step of 2° in mode Saxton within 45 minutes. The second one was recorded by 'fast tomography' in 150 seconds. From these data, a quantitative analysis of the Pd nanoparticles (NP) distribution and size was performed and reported in Fig. 3. Although differences obviously exist (especially, the fast tomography approach misses some of the NPs smaller than nominally 2 nm and tends to overestimate the size of the largest ones), it can be concluded that acquisitions of tilting series in very short times of the order of one minute, or even less, represent a promising way to provide 3D information on samples studied under dynamic gas and temperature conditions such as typically nano-catalysts studied in an Environmental TEM. This fast tomography approach can also be of a great interest for beam sensitive samples where the material is generally not able to bear a long exposure to the electron beam without any specific and sometimes hazardous pre-treatment or preparation.

Acknowledgements

Thanks are due to CLYM (Consortium Lyon - St-Etienne de Microscopie, www.clym.fr) for the access to the microscope funded by the Region Rhône-Alpes, the CNRS and the 'GrandLyon'.

Acknowledgments are also due to BQR project SEE3D granted by Insa-Lyon, ANR project 3DClean, Labex iMUST and IFP Energies Nouvelles for the financial support.


Siddardha KONETI, Lucian ROIBAN (MATEIS / INSA, Lyon), Voichita MAXIM, Thomas GRENIER, Priscilla AVENIER, Amandine CABIAC, Anne-Sophie GAY, Florent DALMAS, Thierry EPICIER
11:15 - 11:30 #5519 - IM01-OP038 Investigating lattice strain in Au nanodecahedrons.
Investigating lattice strain in Au nanodecahedrons.

The three dimensional (3D) structural characterization of nanoparticles is crucial in materials science since many properties heavily depend on size, surface to volume ratio and morphology.  In addition, the ability to investigate the crystal structure is just as essential because the presence of defects and surface relaxation will directly affect plasmonic or catalytic properties. A well-known example of strained nanoparticles are the so-called “nanodecahedra” or “pentagonal bipyramids”. Such particles consist of five segments bound by {111} twin boundaries, yielding a crystallographic forbidden morphology. Therefore, measuring strain fields in nanodecahedra by transmission electron microscopy (TEM) has been the topic of several studies. However, it is important to note that such studies are based on 2D projections, hereby neglecting the 3D nature of the lattice strain. [1,2] Here, we will quantify the lattice strain in 3D based on high resolution electron tomography reconstructions. [3]

 

Therefore, a continuous tilt series of 2D projection images was acquired using high angle annular dark field (HAADF) scanning transmission electron microscopy (STEM) and a dedicated alignment procedure was applied. These projection images are then used as an input for a model based tomography reconstruction algorithm. A major disadvantage of conventional reconstruction techniques is that a continuous volume is reconstructed hampering the extraction of atom coordinates without the use of dedicated post-processing methods. [4] We could overcome this limitation by assuming that the 3D atomic potential can be modelled by 3D Gaussian functions. This hypothesis significantly simplifies the reconstruction problem to a sparse inverse problem, yielding the coordinates of the individual atoms as a direct outcome of the reconstruction.

 

Visualizations of the final 3D reconstruction, obtained for a Au nanodecahedron containing more than 90,000 atoms, are presented in Figure 1.a-c along different viewing directions. Since the coordinates of the atoms are a direct outcome of the reconstruction, it becomes straightforward to calculate the 3D displacement map. We computed derivatives of the displacement map in such a manner that 3D volumes were obtained corresponding to εxx and εzz. Slices through the resulting εxx and εzz volumes are presented in Figure 1.d and Figure 1.f. Furthermore, the variation of the lattice parameters was investigated along x and z based on the same slices (Figure 1.e and Figure 1.g). Both along the x and z direction a systematic outward expansion of the lattice can be observed. The expansion along z is limited to a few of the outer atomic layers and shows an asymmetry (Figure 1.f-g) that is likely related to the fact that the decahedron is deposited on a carbon support.

 

[1] C.L. Johnson, et al., Nat. Mater. 7 (2007) 120-124

[2] M.J. Walsh, et al., Nano Letters 12 (2012) 2027-2031

[3] B. Goris, et al., Nano Letters 15 (2015) 6996-7001

[4] R. Xu, et al., Nat. Mater. 14 (2015) 1099–1103

[5] The authors gratefully acknowledge funding from the Research Foundation Flanders (project numbers G.0369.15, G.0374.13  and a post-doctoral grant to B.G. and A.D.B.). S.B. and D.Z. acknowledge the European Research Council, ERC grant N°335078 – Colouratom. The research leading to these results has received funding from the European Union Seventh Framework Programme under Grant Agreements 312483 (ESTEEM2).  


Bart GORIS (Antwerp, Belgium), Jan DE BEENHOUWER, Annick DE BACKER, Daniele ZANAGA, Joost BATENBURG, Anna SANCHEZ-IGLESIAS, Luis LIZ-MARZAN, Sandra VAN AERT, Jan SIJBERS, Gustaaf VAN TENDELOO, Sara BALS
11:30 - 11:45 #6057 - IM01-OP042 Three dimensional confocal imaging using coherent elastically scattered electrons.
Three dimensional confocal imaging using coherent elastically scattered electrons.

To fully understand structure-property relationships in nanostructured materials, it is important to reveal the three dimensional (3D) structure at the nanometre scale.

Scanning electron confocal microscopy (SCEM) was introduced as an alternative approach to 3D imaging in 20031. The confocal method was originally developed in optical microscopy to image the 3D structure of biological samples2. The incident beam is focused at a certain depth in a thick sample, and the excited fluorescence signal is imaged onto the detector plane through the imaging system. A small pin hole before the detector only allows the signal from the confocal plane to reach the detector and blocks the out-of-focus signal. Critically, by using a fluorescent signal, the incident and outgoing waves lose their phase relationship and an incoherent 3D point spread function can be achieved.

The optical setup in SCEM is analogous to fluorescence confocal microscopy and also requires an incoherent signal to achieve the incoherent 3D point spread function. Several groups have developed different approaches to using inelastically scattered electrons to achieve an incoherent confocal condition in the TEM3,4,5, however, difficulties remain. Core-loss electrons have a suitably limited coherence length, however, the excitation probability is extremely low which leads to a poor signal to noise ratio (SNR). Low loss electrons give a much better SNR but still have a significant coherence length due to the collective nature of the  excitation.

In this work, we introduce a different approach to achieve 3D imaging in a confocal mode by using the elastically scattered, coherent electrons. This method exploits the depth sensitivity of electrons that have suffered a specific momentum change, rather than an intensity change.  According to Fourier optics, when a thin object is inserted at a distance z above the confocal plane, the new wave function at the confocal plane will be the original probe convoluted with the Fourier transform of the object function, together with a scale factor related to z (defined in fig.1). For crystalline specimens, the Fourier transform of the object function is a set of delta functions, so a diffraction-like pattern will be generated at the confocal plane. Importantly, the separation between the diffraction spots is proportional to the distance z (see fig.1), so that the resulting diffraction contrast is very sensitive to depth. This strong depth sensitivity is combined with the very strong SNR due to the use of the elastically scattered signal. Applications to the imaging of 3D engineered nanostructures are demonstrated (fig. 2 and 3).

1. S. P. Frigo, Z. H. Levine, and N. J. Zaluzec, Appl. Phys.Lett. 81, 2112 (2002 and N. J. Zaluzec, U.S. Patent No. 6,548,810 B2 (2003).

2. T. Wilson and C. Sheppard, Theory and practice of scanning optical microscopy (Academic Press, London ; Orlando, 1984)

3. Wang, P., Behan, G., Takeguchi, M., Hashimoto, A., Mitsuishi, K., Shimojo, M., & Nellist, P. D. (2010). Phys. Rev. Lett. 104(20), 200801.

4. Xin, H. L., Dwyer, C., Muller, D. A., Zheng, H., & Ercius, P. (2013). Microsc. Microanal., 19(04), 1036-1049.

5. C Zheng, Y Zhu, S Lazar, J Etheridge, Phys. Rev. Lett. (2014) 112 (16), 166101

Acknowledgement: The authors thanks staff at the Monash Centre for Electron Microscopy. The double-aberration Titan3 80-300 FEGTEM was funded by ARC grant LE0454166.


Changlin ZHENG (Melbourne, Australia), Ye ZHU, Sorin LAZAR, Joanne ETHERIDGE
11:45 - 12:00 #5183 - IM01-OP037 Multi-modal electron tomography for 3D spectroscopic analysis using limited projections.
Multi-modal electron tomography for 3D spectroscopic analysis using limited projections.

     Electron tomography applied to spectroscopic signals in the scanning transmission electron microscope (STEM) offers the possibility for quantitative determination of structure-chemistry relationships with nanometre spatial resolution. Electron energy loss spectroscopy (EELS) and X-ray energy dispersive spectroscopy (EDS), however, often require long exposure times or high beam currents for sufficient data quality for spectral tomography. Many materials samples are not sufficiently stable under the electron beam for the prolonged irradiation times necessary for conventional tilt-series acquisition and back-projection tomographic reconstruction schemes using STEM spectrum imaging signals. Reduced dose acquisition strategies will, in general, require the use of fewer projections for tilt-series electron tomography because signals with sufficient signal-to-noise must be recorded on the respective detectors for quantitative chemical reconstructions, establishing a limit on the minimum acquisition time for individual spectrum images using current detector technologies. While methods such as compressive sensing electron tomography (CS-ET) [1] show promise for reducing the number of projections required for successful tomographic reconstructions, combining information from multiple simultaneous imaging modes in the STEM provides a complementary strategy for further reducing electron dose in spectral tomography. Simultaneously acquired signals that offer structural contrast information (e.g. ADF STEM, low-loss EELS, qualitative EDS tomography) in many cases enable the spectral tomography problem to be re-cast as a recovery problem with reduced dimensionality. The 3D reconstruction of spectral data can then be recovered quantitatively from substantially fewer spectrum images. In the case of surface plasmon modes of silver particles, ADF STEM tomography has already been applied in conjunction with EELS spectrum imaging to reconstruct the surface charge distributions [2], a two-dimensional reconstruction problem (on a surface) defined in three-dimensional spatial coordinates.

     This approach has been extended to the recovery of voxel spectra from the cloudy zone, a spinodal decomposition of Fe-Ni in the Tazewell meteorite (Figure 1). Due to minimal ADF STEM contrast, qualitative EDS tomography using the Ni K-alpha signal was analysed for structural segmentation of the sample volume. Re-projections of the extracted binarized volumes for each of the two phases were then used as a thickness-series to re-cast the recovery problem as an overdetermined system of linear equations, assuming homogeneous composition within each phase. The spectral intensity at each energy channel was decomposed according to the thickness data for each phase available at each pixel in the two-dimensional spectrum images, allowing relative spectral intensities to be attributed to the voxels assigned to each of the two phases. The resulting tomographically unmixed spectra enabled improved EDS quantification of the relative Fe-Ni ratios in each phase, giving results within 2% of quantification by atom probe tomography of similar material from the cloudy zone of the Tazewell meteorite.

     Applications to core-loss STEM-EELS analyses will be presented, further extending this family of methods to cases involving plural-scattering corrections implemented in conjunction with the linear thickness unmixing approach. Comparisons of signal unmixing determined from multi-modal structural and spectral tomography and blind-source separation methods (e.g. non-negative matrix factorization or independent component analysis) of two-dimensional spectrum image data will also be discussed.

 

References: [1] Saghi, Z.; Holland, D.J.; Leary, R.K.; Falqui, A.; Bertoni, G.; Sederman, A.J.; Gladden, L.F.; Midgley, P.A. Nano Lett., 2011, 11, 4666-4673. [2] Collins, S.M.; Ringe, E.; Duchamp, M.; Saghi, Z.; Dunin-Borkowski, R.E.; Midgley, P.A. ACS Photonics, 2015, 2, 1628-1635.

Acknowledgements: The research leading to these results has received funding from the European Research Council under the European Union’s Seventh Framework Program (No. FP7/2007-2013)/ERC Grant Agreement No. 291522-3DIMAGE and (No. FP7/2007-2013)/ERC Grant Agreement No. 320750-Nanopaleomagnetism as well as the European Union’s Seventh Framework Program under a contract for an Integrated Infrastructure Initiative (Reference No. 312483-ESTEEM2).


Sean COLLINS (Cambridge, United Kingdom), Joshua EINSLE, Zineb SAGHI, Robert BLUKIS, Richard HARRISON, Paul MIDGLEY
12:00 - 12:15 #6946 - IM01-OP053 Random Beam Scanning Transmission Electron Microscopy and Compressive Sensing as Tools for Drastic Electron Dose Reduction in Electron Tomography.
Random Beam Scanning Transmission Electron Microscopy and Compressive Sensing as Tools for Drastic Electron Dose Reduction in Electron Tomography.

Electron tomography is a fantastic tool for deciphering the structural information of complex 3D samples. During the last years, several tools have been developped to improve the 3D reconstruction quality of thick specimens. The direct detector cameras have incredibly increased the SNR and resolution of thin samples 2D projections, bringing electron microscopy resolution at the level of the one of X-ray diffraction studies. However, the study of thick biological samples in tomography still suffers from the too important electron dose one has to use in order to retrieve high quality images and reconstructions. It has been shown that STEM tomography can generate more accurate reconstructions than TEM tomography while preserving better the sample integrity. Previous uses of compressive sensing enabled the reduction of tilt-angles in tomography studies, unveiling electron dose reduction. Here, we push further the electron dose reduction thanks to a more effective compressive sensing method which uses incomplete images as incoherent data. The generation of incomplete images being performed at the microscope during the acquisition process where the beam randomly scans the surface of the sample.


Sylvain TREPOUT (Institut Curie / INSERM U1196), Masih NILCHIAN, Cédric MESSAOUDI, Laurène DONATI, Michael UNSER, Sergio MARCO
12:15 - 12:30 #6266 - IM01-154 Comparison of propagation-based phase contrast tomography and full-field optical coherence tomography on bone tissue.
IM01-154 Comparison of propagation-based phase contrast tomography and full-field optical coherence tomography on bone tissue.

The current huge development of new 3D microscopic techniques (synchrotron microtomography, optical coherence tomography, light sheet microscopy, …) opens a large variety of new perspectives for life sciences. The contrasts of these new microscopies are mostly well understood on samples of known material content such as those used in physics or instrumentation studies. The situation is different when it comes to the interpretation of the contrasts observed with complex heterogeneous media found in biology. Therefore determining which 3D microscopy technique is suited for which biological question is a topic of current interest (see [1,2] for instance in our group).

In this communication, we propose a comparison of the contrast observed with full-field optical coherence tomography (OCT) and propagation-based phase contrast tomography (PCT) on bone tissue at similar spatial resolution. A first comparison of OCT with standard absorption microtomography was given in [3] for bones and we extend this comparison to PCT which is known to provide enhanced contrast on bones at multiple scales [4]. The contrast of both these techniques are a priori interesting to be compared since they both rely on discontinuities of refraction index. This produces phase shift in PCT which operates in the X-ray domain with a monochromatic beam (generated by a synchrotron) while this generates direct intensity reflexion with OCT which only resorts to white light in the visible domain.

As visible in Figure 1, we specifically focussed our attention on the contrast observed in both techniques around the same bone structural unit, a so-called osteon, at a microscopic scale with images of same spatial resolution (voxel size 3.5µm). It happens that the osteons are visible in PCT while they are not perceptible with conventional absorption micro computed tomography. Also, concentric lamellae, corresponding to the so-called Harvers system, appear clearly visible in OCT while they are not perceptible with PCT at this spatial resolution. The contrast between the osteon and the surrounding bone tissue, is found in terms of homogeneous regions in PCT. However, this less spatially resolved contrast in PCT is constant throughout the sample while it is spatially variable in OCT where a continuous degradation of the contrast is observed along the direction Z of the propagation of light. We found, as given in Figure 2, that a certain spatial average of some 30 µm along Z was able to improve optimally the contrast across the concentric lamellae when inspected at the surface (up to 500 µm depth) of the sample with OCT. This contributes to establish quantitatively the complementarity of OCT and PCT for the characterization of bones at the microscopic scale.

 

References:

 

[1] Rousseau, D., Widiez, T., Tommaso, S., Rositi, H., Adrien, J., Maire, E., Langer, M., Olivier, C., Peyrin, F. Rogowsky, P. (2015). Fast virtual histology using X-ray in-line phase tomography: application to the 3D anatomy of maize developing seeds. Plant methods, 11(1), 1.

 

[2] Rositi, H., Frindel, C., Wiart, M., Langer, M., Olivier, C., Peyrin, F., Rousseau, D. (2014). Computer vision tools to optimize reconstruction parameters in x-ray in-line phase tomography. Physics in medicine and biology, 59(24), 7767.

 

[3] Kasseck, C., Kratz, M., Torcasio, A., Gerhardt, N. C., van Lenthe, G. H., Gambichler, T., . Hofmann, M. R. (2010). Comparison of optical coherence tomography, microcomputed tomography, and histology at a three-dimensionally imaged trabecular bone sample. Journal of biomedical optics, 15(4), 046019-046019.

 

[4] Peyrin, F., Dong, P., Pacureanu, A., & Langer, M. (2014). Micro-and Nano-CT for the Study of Bone Ultrastructure. Current osteoporosis reports, 12(4), 465-474.

 

Acknowledgement : This work was supported by the European Synchrotron Research Facility (ESRF, project LS-2290) through the allocation of beam time.


Sylvaine DI TOMMASO, Hugo ROSITI, Max LANGER, Carole FRINDEL, Cécile OLIVIER, Françoise PEYRIN, David ROUSSEAU (VILLEURBANNE CEDEX)
Salle Bellecour 1,2,3

"Monday 29 August"

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MS4-I
10:30 - 12:30

MS4: Complex materials and nanocomposites
SLOT I

Chairpersons: Rick BRYDSON (Chairperson, Leeds, United Kingdom), Marc SCHMUTZ (Chairperson, CNRS-UNISTRA, Strasbourg, France)
10:30 - 11:00 Cryo MEB. Roger A. WEPF (Invited speaker, Zürich, Switzerland)
Invited
11:00 - 11:15 #5792 - MS04-OP249 Application of Cryogenic Focused Ion Beam Scanning Electron Microcopy to Hydrogel Characterisation.
Application of Cryogenic Focused Ion Beam Scanning Electron Microcopy to Hydrogel Characterisation.

Hydrogels are an important material as support matrices for cells to promote growth. These systems have been characterized by electron microscopy, through the application of fixation or sucrose embedding followed by ultramicrotomy. In this way the porosity of the gels can be assessed by transmission electron microscopy (TEM) and/or scanning electron microscopy (SEM). While this approach does give a guide to porosity of samples the absence of water in a hydrogel will have a detrimental effect and its absence distorts the dimensions of the remaining gel. Focused ion beam scanning electron microscopy (FIB-SEM) has been used on dried hydrogels [1], however, we propose a new method of gel porosity characterization by the use of cryogenic-FIB-SEM (cryo-FIB-SEM).  

Cryo-SEM is a long established technique to preserve the water content of a sample and more recently it has been demonstrated that cryo- FIB-SEM can be used for biological and soft matter materials [2]. In this work, the authors have used cryo-FIB-SEM to investigate the porosity and structure of gels whilst in the presence of water. Gels were plunge frozen in slush nitrogen or using a metal mirror freezer and transferred under liquid nitrogen to the sample shuttle of a Cryo-SEM system (Quorum PPT 2000, Quorum Technologies). In the prep-chamber, the sample was coated for 60 seconds using a Pt sputter target. The samples were then loaded into the FIB-SEM (FEI Quanta 3D, FEI). Once in the SEM chamber, the gels were prepared for FIB by deposition (3-4 seconds) of a platinum precursor from the gas injector (set to 27 °C) of the microscope.

The hydrogel samples were milled using an initial current of 1-3 nA to make a rough cut and then by further cuts at lower milling currents (0.3 nA-50 pA), to remove the common milling artefact known as curtaining. SEM micrographs of the visible milled face showed dark patches with largely white areas in between. It was initially postulated that the darker areas were the pores of the gel. In order to test this, the temperature in the SEM chamber was raised to -90 °C, leading to slow sublimation of the water at the FIB milled face (Figure 1). Over approximately 20 minutes images of the slowly subliming gel were acquired. The resulting images show a transition from the black features amongst the majority of lighter contrast through to images with inverse contrast. The final sublimed gel images are clearly interpretable as a porous gel where now the lighter contrast features are identified as the gel strands and the pores are now darker and devoid of water. With a better understanding of the location of these components the original non-sublimed images can be re-examined and the black contrast correlated directly to the polymer and the white to the water.

By inverting the contrast of the original milled face image, it is possible to give an image equivalent to the dehydrated image, but which has all the water bound and is therefore a truer representation of the gel’s morphology (Figure 2). The major advantage to this is that the sample does not undergo shrinkage, and that the process of imaging the milled face hydrated saves time. Additional slices of the freshly milled face may then be acquired to yield a series of slices suitable for 3D rendering (figure 3).

 

References:

[1] A Al-Abboodi et al., Biotech and Bioengineering, 110 (2013), p. 328.

[2] M Marko et al., J Microsc. 222 (2006), p. 42


Chris PARMENTER (Nottingham, United Kingdom), Abdulraman BAKI, Kevin SHAKESHEFF
11:15 - 11:30 #5948 - MS04-OP252 Low dose analysis of nanoparticles suspended in vitreous ice for near native state imaging.
MS04-OP252 Low dose analysis of nanoparticles suspended in vitreous ice for near native state imaging.

Most formulated fine chemical products are complex systems that contain multiple components, with nanoparticles and any incorporated surface coatings interacting with other particles and the dispersant (which can be a liquid or solid). Assessing nanoparticles when suspended in a liquid can be challenging as the particles may disperse individually, agglomerate, aggregate, sediment, chemically-alter or even dissolve and re-precipitate.  With the appropriate sample preparation however, TEM can be used to measure the dispersion and any transformation of nanoparticles suspended in, for example, biological or environmental media [1,2].

Conventional transmission electron microscopy (TEM), with samples prepared by simply drop-casting suspensions onto a thin carbon film, enables imaging and analysis of individual nanoparticles but, because of the drying process, does not capture the particle agglomeration in the dispersion or the surface chemistry when hydrated [3]. To overcome this problem we have prepared thin sections of nanoparticle suspensions for TEM by plunge-freezing a blotted grid into liquid ethane to ensure the aqueous phase vitrifies with no significant redistribution of suspended material. We have used this technique to quantify the dispersion of polymer coated quantum dots, silica and zinc oxide nanoparticles in water and biological cell culture media, identifying the true form in which these nanoparticles are taken up into cells in vitro and thereby providing mechanistic insight to the cellular response at these exposures [3,4,5].

Low dose electron microscopy of nanoparticles suspended in vitreous ice provides opportunity for the analysis of the structure and chemistry of the dispersion, both vital characteristics to understand before any successful biomedical exploitation of nanoparticles. Here, dextran coated iron oxide nanoparticles agglomerated in aqueous suspension and captured in vitreous ice were imaged by bright field TEM and analysed by energy dispersive X-ray (EDX) spectroscopy. Careful control of the illumination conditions (electron dose) permit near native state imaging and confirmation of composition before inducing significant damage to the surrounding ice matrix and subsequent movement of the particles (Figure 1). HAADF STEM imaging was conducted using a 1.3 Å probe and 60 pA probe current, with a resulting EDX map collected in just over one minute showing an iron signal appropriately localised to the nanoparticles (Figure 2).

Going forward, we will use the recently installed FEI Titan Cubed Themis 300 G2 S/TEM at the University of Leeds which is equipped with FEI SuperX EDX spectrometers, a Gatan Quantum ER imaging filter and Gatan OneView CCD to explore the limits of nanoparticle structural analysis (incorporating diffraction and lattice imaging), as well as use of STEM-EDX and electron energy loss spectroscopy for detailed elemental analysis when encased in vitreous ice. In addition to examining the dispersion state of nanoparticles in different suspensions, our goal is to identify and analyse the surface coatings on nanoparticles in the frozen hydrated state, thereby extending the capability of near native state imaging and analysis of nanoparticle suspensions by TEM.

 

 

 

1. N. Hondow, A. Brown and R. Brydson (2015) Frontiers of Nanoscience, 8, 183 – 216.

2. R. Brydson, A. Brown, C. Hodges, P. Abellan and N. Hondow (2015) J. Microscopy, 260, 238 – 247.

3.  N. Hondow, R. Brydson, P. Wang, M.D. Holton, M.R. Brown, P. Rees, H.D. Summers and A. Brown (2012), J. Nanopart. Res., 14, 977.

4. Q. Mu, N.S. Hondow, L. Krzeminski, A.P. Brown, L.J.C. Jeuken and M.N. Routledge (2012) Particle Fibre Toxicol. 9, 1.

5. R. Wallace, A.P. Brown, R. Brydson, S.J. Milne, N. Hondow, P. Wang (2012) J. Phys. Conf. Ser. 371, 012080.

 

Acknowledgment: We thank FEI for the data shown in the figures which were collected as part of a demonstration at the FEI Nanoport, Eindhoven, and Steve Evans (Swansea University) for the dextran coated iron oxide nanoparticles.


Nicole HONDOW (Leeds, United Kingdom), Michael WARD, Rik BRYDSON, Andy BROWN
11:30 - 11:45 #6121 - MS04-OP254 Scanning electron diffraction of polyethylene.
Scanning electron diffraction of polyethylene.

Microstructural investigation of light elements and highly beam sensitive polymer materials using electron microscopy is attractive for elucidating nanostructure but presents numerous challenges. In particular, heavy element staining, often used to obtain image contrast, may obscure or degrade the structure of interest and the acquisition of detailed and spatially resolved information must be balanced with damage of the specimen. Here, scanning electron diffraction (SED) has been used to analyse the crystalline microstructure of unstained polyethylene, overcoming these challenges. SED involves scanning the electron beam across the specimen and recording a diffraction pattern at each position [1] at a high frame rate to enable the data to be acquired before severe degradation of the structure has occurred. In this way, electron diffraction patterns were obtained from an unstained polyethylene sample in 5 nm steps, over areas of a few microns squared and with a 10 ms dwell time. Radiation damage was further minimised by using a high electron acceleration voltage (300kV) to minimise radiolysis and cooling the sample with liquid nitrogen [2]. The diffraction patterns, acquired at every position in the scan, were indexed and analysed by plotting the intensity of a particular reflection as a function of electron probe position to form ‘virtual’ dark field (VDF) images. VDF imaging is much more effective than conventional imaging for visualizing the microstructure of polyethylene. Clear contrast is obtained without staining and the versatile post-facto nature of VDF image formation enables multiple complementary images to to be produced from a single acquisition.
Two novel observations from our SED experiments on polyethylene are highlighted here. The sample of polyethylene was extruded from a melt so as to form ‘shish-kebab’ structures confirmed through BF images of stained microtomed sections. For our experiments, again the samples were microtomed but now unstained to avoid any influence of the stain on the diffraction patterns. The first experiment highlights a lamella-like fragment of polyethylene crystal (likely to be a part of the ‘kebab’ structure). Fig 1 shows a ‘virtual’ BF image and a sample of diffraction patterns that can only be indexed assuming the orthorhombic crystal structure of polyethylene and that the lamella is twisting about a single axis almost parallel to the vertical axis of the image. Moreover, forming consecutive VDF images made it possible to visualize each region of the crystal having a particular orientation in the twisted lamella (Fig 2). In the second experiment, we found that the sample had several micron sized islands of hexagonal polyethylene first seen as a high pressure phase [3]. However, here the patterns reveal a √3 superstructure with weak spots at the 1/3[110]* position (Fig 3). VDF images (Fig 3(b-d)) formed by these supercell reflections revealed domains within which ‘striped’ contrast can be seen; these stripes run at an orientation of approximately 120° to one another. This work demonstrates the applicability of the SED technique to highly beam sensitive materials like polyethylene and the potential for new microstructural insights to be made in this way.


[1] Moeck P. et al., Cryst. Res. Technol., 2011, 46, 586-606
[2] Egerton R. F. et al., Micron, 2004, 35, 399-409
[3] Bassett D. C., et al., Journal of Applied Physics, 1974, 4146-415

   

PAM and SJK would like to acknowledge funding under ERC Advanced Grant 291522-3DIMAGE. DNJ receives a Vice Chancellor’s award from the University of Cambridge. HJ and HT thank Ms. Makiko Ito for her help in microtoming the polyethylene samples. The authors would like to thanks Anton Jan Bons (ExxonMobil) for initiating this research and stimulating discussions.


Sungjin KANG (Cambridge, United Kingdom), Duncan JOHNSTONE, Hiroshi JINNAI, Takeshi HIGUCHI, Hiroki MURASE, Paul MIDGLEY
11:45 - 12:00 #6743 - MS04-OP258 Non-rigid image registration of low-dose image series of zeolite materials.
Non-rigid image registration of low-dose image series of zeolite materials.

Zeolites are an important group of materials with a wide range of application in the catalysis industry. Many structural studies of zeolites rely on high resolution electron microscope imaging [1]. However, due to their high sensitivity to electron irradiation, zeolites deteriorate quickly under exposure to the electron beam. Low-dose imaging techniques use a reduced electron flux to slow the crystal degradation process, which gives more time for adjustment of the microscope configuration and better control over the progression of damage. However the disadvantage of low-dose imaging is poor signal to noise ratio which is often alleviated by averaging multiple image frames in a time series for improved image quality. Traditional rigid cross-correlation function (XCF) image registration methods work well for aligning high-dose time series of radiation-robust materials which experience little or no deformation during image acquisition. However, the deformation in radiation-sensitive materials, often manifest by sample shrinkage, means that the single translational shift vector from rigid image registration may not be sufficient for aligning time series and hence a non-rigid registration scheme is needed.

 

In this work, a low-dose time series of ZSM-5 zeolite consisting 60 image frames were recorded using an aberration-corrected JEOL2200MCO TEM (Figure 1). Two registration methods, a rigid XCF registration and a new non-rigid registration, were used to align the series respectively. The non-rigid registration method [2] is assisted by an IQ factor criterion, which evaluates the quality of the averaged image of the series as the registration proceeds and selects the best averaged image as the reference for future registration iterations.

 

The results show that the new non-rigid registration is helpful for alignment of low-dose TEM image series of radiation-sensitive materials that experience deformation during imaging, especially when the number of frames is small and when the sample is already damaged (Figure 2). This implies that, for TEM image series, the non-rigid registration approach is more effective in noise suppression and in avoiding the image components of a damaged sample compromising the final averaged image.

 
For further comparison, a low-dose STEM time series of zeolite Y, was registered by both rigid and non-rigid methods. A comparative analysis of IQ factor was carried out on the averaged images and showed that the non-rigid registration consistently outperforms the rigid XCF registration (Figure 3). The reason for this advantage is attributed to the fact that the STEM images often suffer from additional scan noise due to the pixel-by-pixel acquisition in STEM imaging. 
 
 
References
[1] M. Pan and P. A. Crozier, Ultramicroscopy. 1993 48(3):332–340.
[2] B. Berkels, P. Binev, D. A. Blom, W. Dahmen, and R. C. Sharpley, Ultramicroscopy. 2014 138:46-56. 

Chen HUANG (Oxford, United Kingdom), Benjamin BERKELS, Angus KIRKLAND
12:00 - 12:15 #6980 - MS04-OP259 Three dimesional nano- and interfacial structures in the Si rich SiC systems analysed by spectroscopic electron tomography.
Three dimesional nano- and interfacial structures in the Si rich SiC systems analysed by spectroscopic electron tomography.

Silicon (Si) nanopartcles (NPs) embedded in the insulating or semiconducting matrices has attracted much interest for the third generation of photovoltaics, so called “all-Si” tandem solar cells. In this work, the amorphous Si rich silicon carbide (SRSC) absorber layers with 30% carbon content were deposited using plasma enhanced chemical vapour deposition (PECVD) on quartz substrate at 500 ˚C, and then the SRSC films were annealed at 1100 ˚C in nitrogen for 1 hour 1. The thermal treatment leads to the SRSC films spinodally decomposed into a Si-SiC nanocomposite. The nanostructures of the phase separated Si and SiC presented in the 15 minutes and 1 hour annealed SRSC films were investigated by two dimensional (2D) energy-filtered transmission electron microscopy (EFTEM). After the thermal treatment, the coexistence of crystalline Si and SiC nanoparticles (NPs) were observed from the high resolution TEM (HRTEM) images and verified by the selected area diffraction (SAD) patterns. After 1 hour annealing, neither Si nor SiC phases are complelely crystallized, the detailed morphologies of Si and SiC nanostructures were studied by electron tomography. For the first time, we make use of EFTEM spectra-imaging (SI) dataset to reveal the three dimensional distributions of Si, a-SiC and c-SiC in sub-volumes. In particular, to obtain more detailed and quantitative information, we have fitted the plasmon spectra with reference plasmon peaks. This enables us to not only to get a quantitative 3D image of all components involved in the materials system in the final tomogram, but also to obtain information about hitherto undetected phases in this system. In such energy resolved plasmon tomograms, the 3D shape of a thin amorphous SiC layer (1) was observed at interface between the crystalline Si network like structure and crystalline SiC NPs. The appearance of the a-SiC interfacial layer is expected from nucleation theory.

Acknowledgements

The authors ackonwledge the support from the EU funded FP7 Project SNAPSUN, the Knut and Alice Wallenberg Foundation and the Swedish Science Council.

References

1.        Perraud, S. et al. Silicon nanocrystals: Novel synthesis routes for photovoltaic applications. Phys. Status Solidi a-Applications Mater. Sci. 210, 649–657 (2013).


Ling XIE, Karol JAROLIMEK, Rene VAN SWAAIJ, Klaus LEIFER (Uppsala, Sweden)
12:15 - 12:30 #5927 - MS04-OP251 Understanding the complex structures in nanoglasses.
MS04-OP251 Understanding the complex structures in nanoglasses.

In recent years nanoglass materials have attracted a lot of interests due to their special physical properties, which differ significantly from traditional bulk amorphous materials of the same composition [1,2]. For example, a Sc75Fe25 nanoglass exhibited a remarkable plasticity whereas the corresponding ribbon glass was brittle [3]. It has been suggested that these special properties originate from the interfacial regions between amorphous nano domains (analogous to grain boundaries changing the properties of nanocrystalline materials), which have either a different atomic configuration or chemical composition, or both compared to the domain core. Due to the amorphous structure of the materials, the structural variations between the core of a glassy grain and the interfacial region are difficult to distinguish, especially when the composition is similar. By STEM-EDX/EELS spectrum imaging and by EFTEM imaging, such composition variations were confirmed for a number of nanoglass systems synthesized using various methods [2], for example inert gas condensation (IGC), magnetron sputtering and ultra-high vacuum (UHV) cluster deposition. On the other hand, radial distribution function (RDF), which can be extracted from electron diffraction, has proven very sensitive to the small difference in atomic configurations [4], e.g., interatomic distances and coordination numbers. The newly developed STEM-RDF mapping has been shown to be capable of resolving the different amorphous structures at nanoglass core and at the interface, respectively.

In this presentation, we investigated the Sc75Fe25 nanoglass primary particles synthesized by IGC as well as the pellet pressed at 6 GPa. The primary particles were directly collected by a carbon coated TEM grid and the pellet sample was processed by FEI strata focused ion beam (FIB) for TEM observation. From the STEM-EDX mapping on the primary particles (Fig. 1), a Sc-rich shell is clearly resolved. Quantification of the integrated spectra from the out part and from the core of the particle reveals the Sc:Fe atomic ratio being around 4:1 and 2:1, respectively. After consolidation under high pressure, the inhomogeneity in primary particles remains and leads to Sc-rich interface between the areas originated from the particle cores. Additionally, by performing STEM-nanobeam diffraction on the pressed Sc75Fe25 sample, RDF mapping was obtained and two different types of RDFs are distinguished, indicating that there exist two major components, one with higher Fe-Sc coordination number (red curve in Fig.2), and the other one with higher Sc-Sc coordination number (green curve in Fig. 2). By multiple linear least square (MLLS) fitting, corresponding component maps are constructed and shown in Fig.2. In the color-mix map, the green areas represent the interface between particle cores, where Sc-Sc bonding is dominating and the red areas represent the particle cores, where Fe-Sc coordination is considerably higher.

In nanoglass systems synthesized by other method, e.g. NiTi-Cu by magnetron sputtering [5] and NiP by electrochemical deposition, composition and structure fluctuations were also observed. The different amorphous structures constrained locally can be successfully revealed by (S)TEM spectroscopic and nanobeam diffraction methods, which is an important step towards understanding the unique structure in nanoglasses compared to the conventional glasses. The correlation between synthesis and structure of nanoglasses makes it possible to design the amorphous nanomaterials with desired functionalities.

References

1. H. Gleiter, Acta mater. 48 (2000) 1.

2. Gleiter, Beilstein J. Nanotechnol. 4 (2013) 517.

3. J.X. Fang, U. Vainio, W. Puff, R. Würschum, X.L. Wang, D. Wang, M. Ghafari, F. Jiang, J. Sun, H. Hahn, H. Gleiter, Nano Lett. 12 (2012) 5058.

4. X. Mu, S. Neelamraju, W. Sigle, C.T. Koch, N. Totò, J.C. Schön, A. Bach, D. Fischer, M. Jansen, P. van Aken, J. Appl. Cryst. 12 (2013) 1105.

5. Z.Śniadecki, D.Wang, Yu.Ivanisenko, V.S.K.Chakravadhanula, C.Kübel, H.Hahn, H.Gleiter, Materials characterization 113 (2016) 26.


Di WANG, Xiaoke MU (Eggenstein-Leopoldshafen, Germany), Chaomin WANG, Tao FENG, Aaron KOBLER, Christian KÜBEL, Horst HAHN, Herbert GLEITER
Salle Prestige Gratte Ciel

"Monday 29 August"

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MS7-I
10:30 - 12:30

MS7: Materials for optics and nano-optics
SLOT I

Chairpersons: David MCCOMB (Chairperson, Columbus, USA), Jérôme PLAIN (Chairperson, Troyes, France)
10:30 - 11:00 #8634 - MS07-S84 Characterizing Localized Surface Plasmons using Electron Energy-Loss Spectroscopy.
Characterizing Localized Surface Plasmons using Electron Energy-Loss Spectroscopy.

Localized surface plasmon resonances (LSPRs) are the coherent and collective oscillations of conduction band electrons at the surface of metallic nanoparticles. LSPRs are known to localize far-field light to a sub-diffraction-limited length scale, yielding an intense electric field at the particle surface. This effect has been harnessed to dramatically enhance light-matter interactions, leading to a variety of applications such as surface-enhanced Raman spectroscopy (SERS), photothermal cancer therapy and solar energy harvesting. Though a variety of near- and far-field optical methods are used to probe LSPRs, the spatial resolution of these methods is on the order of tens of nanometers, limiting their effectiveness. In contrast, electron energy loss spectroscopy (EELS) performed in a scanning transmission electron microscope (STEM) combines sub-nanometer resolving power with the capability to excite both optical-accessible and –inaccessible plasmon modes and therefore has emerged as one of the leading techniques (Figure 1). In this presentation, I will briefly introduce the STEM/EELS technique and demonstrate the power of STEM/EELS in the characterization of LSPRs. In addition to the traditional use of STEM/EELS for LSPR imaging, we have recently demonstrated that STEM/EELS can also be used to spatially map LSP-semiconductor energy transfer at the nanoscale. The future of STEM/EELS as a window into the nanoscopic world is especially promising, and we expect continued advances in the molecular, optical, materials, information, and energy sciences as a result.


Guoliang LI (Notre Dame, USA), Charles CHERQUI, Yueying WU, Philip RACK, David MASIELLO, Jon CAMDEN
Invited
11:00 - 11:30 #7882 - MS07-S85 Optics at the nanoscale with fast electron spectroscopies.
Optics at the nanoscale with fast electron spectroscopies.

Electron microscopy techniques have been used to probe the optical properties of materials in the subwavelength scale. In particular, it has been shown that using cathodoluminesncence (CL) and electron energy loss spectroscopy (EELS), along with a propitious choice of electron beam energy and target material, resolution below 10 nm is attainable.

In this seminar we will describe recent advances electron spectroscopies in a STEM to probe individual quantum structures. Different experiments attempting to probe their optical properties will be presented (including their lifetimes). Typically, a 1-nm-wide 60 keV electron beam was used to excite the sample. Fundamentally, we have measured spectroscopic signals (CL and EELS) and the second order correlation function (g2(t)) of the emitted light of different materials using an optical spectrometer, an EEL spectrometer and a Hanbury-Brown and Twiss interferometer.

We will start by showing how monochromated EELS and CL experiments are well adapted to probe excitonic excitations in different materials. We will show how EELS is specially adapted to probe excitons in 2-dimensional materials, using MoS2 and MoSe2 monolayers as example. For thicker materials, CL is able to more easily produce meaningful information from excitoninc excitations. As examples, we will discuss the luminescence of GaN quantum wells in AlN nanowires (Figure 1) and excitons in hBN flakes.

However, only spectroscopic information does not give a complete picture of the behavior of a specific system. One example are single photon emitters (SPE). To characterize such systems, light intensity interferometry is necessary (a typical experiment in quantum optics). We will demonstrate how a similar experiment using CL is possible, using as example the neutral Nitrogen-Vacancy center in diamond nanoparticles (Figure 2). Also, we will show how this setup allowed the detection of new SPE in hBN.

Finally, we will discuss how a CL setup with a HBT interferometer in a STEM microscope can be used to measure the lifetime of individual quantum emitters with a high spatial resolution (< 15 nm). We name this technique spatially resolved time-correlated cathodoluminescence, SRTC-CL. As an example, we will show that the lifetimes of 8 GaN quantum wells separated by 15 nm in an AlN nanowire can be measured by SRTC-CL.


Luiz TIZEI (ORSAY)
Invited
11:30 - 11:45 #4605 - MS07-OP297 Tomography of particle plasmon fields by electron energy-loss spectroscopy.
Tomography of particle plasmon fields by electron energy-loss spectroscopy.

Tailoring shape of metallic nanoparticles and alignment of nanoparticle assemblies allows controlling the properties of localized surface plasmon resonances, such as peak positions or near field-coupling and enhancement [1]. Electron beam lithography is a versatile tool for nanoparticle manufacturing, but the technique usually suffers from imperfections, surface roughness, and limited spatial resolution, which leads to particle shapes that deviate from design objectives. Similar limitations apply to chemical synthesis, which leads to nanoparticle assemblies with size dispersion and geometry variations. Therefore, to exploit the full potential of plasmonics, full 3D characterization and simulation taking into account the imperfections of real structures become mandatory. Here we present two different tomography-based approaches to understanding complex plasmonic nanoparticles created by electron beam lithography.

In our first approach the precise 3D geometry of a particle dimer fabricated by means of electron beam lithography was reconstructed through electron tomography. This full 3D morphological information was used as an input for simulations of energy-loss spectra and plasmon resonance maps (Figure 1). Here excellent agreement between measured EELS data and theory was found, bringing the comparison between EELS imaging and simulations to a quantitative and correlative level [2].

In our second approach we directly reconstruct particle plasmon fields from a tomographic tilt series of EELS spectrum images. While first approaches and demonstrations of plasmon field tomography were limited to very small particles [3–5] – small enough to neglect retardation – we lift this limitation with our approach making plasmon field tomography generally applicable to nanoparticles of all sizes [6]. Formulation EELS tomography as an inverse problem allows reconstructing the complete dyadic Green tensor for plasmonic particles, which is linked to the photonic local density of states (LDOS). Using this approach we are able to reconstruct the full 3D LDOS for a silver metallic nanoparticle (Figure 2).

This work overcomes the need for geometrical assumptions or symmetry restrictions of the sample in simulations and generalizes plasmon field tomography to particles of all sizes, paving the way for detailed investigations of realistic and complex plasmonic nanostructures.

 

[1]          S.A. Maier, Springer US, Boston, MA, 2007.

[2]          G. Haberfehlner et al., Nano Lett. 15: 7726–7730 (2015).

[3]          A. Hörl et al., Phys. Rev. Lett. 111:076801 (2013).

[4]          O. Nicoletti et al., Nature. 502: 80–84 (2013).

[5]          S.M. Collins et al., ACS Photonics. 2: 1628–1635 (2015).

[6]          A. Hörl et al., ACS Photonics. 2: 1429–1435 (2015).

 

We thank Joachim Krenn and Harald Ditlbacher for access to and support with electron beam lithography and helpful discussion. This research has received funding from the European Union within the 7th Framework Program [FP7/2007-2013] under Grant Agreement no. 312483 (ESTEEM2). We acknowledge support by the Austrian Science Fund FWF under project P27299-N27, the SFB F49 NextLite, and NAWI Graz


Georg HABERFEHLNER (Graz, Austria), Anton HÖRL, Franz P. SCHMIDT, Andreas TRÜGLER, Ulrich HOHENESTER, Gerald KOTHLEITNER
11:45 - 12:00 #5857 - MS07-OP300 Investigating Surface Plasmon-Enhanced Local Electric Fields by EELS with tunable <60meV Energy Resolution.
MS07-OP300 Investigating Surface Plasmon-Enhanced Local Electric Fields by EELS with tunable <60meV Energy Resolution.

Recent improvements in energy resolution, enabled by the use of electron energy monochromators, have the potential to turn EELS into a tool able to provide quantitative information of localized surface plasmons (LSPs), such as damping effects in single particles and electron kinetics of single plasmon modes.[1] Crucial to the prospect of quantitative analysis of LSPs is the requirement that the experimental energy resolution must be better than the natural line width of the plasmon resonances, all the while retaining high enough signal-to-noise ratio to enable an accurate determination of the properties of interest.[1] The energy resolution of EELS is customarily determined by the full-width at half-maximum (FWHM) of the zero-loss (ZL) peak. The plasmon resonances, lying in the low-loss regime, often overlap with the broad tail of the ZL peak, blurring many spectral signatures of interest. Until now, several processing techniques had to be applied to overcome these issues, relying for instance on deconvolution algorithms [2] which can introduce artifacts [3] A new generation of electron monochromators now allows for high signal-to-noise ratios while varying the energy resolution controllably, down to the 10meV regime [4].

Here we present recent results aimed at spatially and spectrally resolving the plasmon resonances of individual plasmonic nanostructures and of functional plasmonic devices using a Cs-corrected and monochromated Nion UltraSTEM 100MC (‘Hermes’) microscope with a nominal energy resolution of 10meV. Figure 1 shows spatially resolved LSP modes of two individual Ag particles with different shapes and different number of crystalline domains for the energy ranges indicated in the figure. Both shape and crystallinity appear to affect the plasmonic response. We show how the energy resolution, which also affects the attainable signal-to-noise ratio and dictates the required integration (exposure) time, can be conveniently set and tuned, depending on the inherent properties of the system of interest. Figure 2A shows as-recorded EEL spectra taken from the centre of a Ag nanowire (inset) and showing a narrow bulk plasmon resonance at 3.85eV. We note that the FWHM of the peak does not decrease with decreasing energy resolution from 40meV to 16meV, meaning that 40meV must be below the natural line width of the resonance. In this context, we will discuss the prospect of not only characterizing bare metallic nanostructures, but of also interrogating chemically functionalized plasmonic nanostructures using EELS. We note that the accessible energy ranges (sub-40 meV) also allows us to probe molecules adsorbed onto metal nanostructures. In the raw spectra in Fig. 2B taken from different locations within a sample, spectroscopic signatures of aromatic thiols chemisorbed onto multiple Ag nanoparticles are shown.[5]

 

References:

[1] M. Bosman et al., Scientific reports, 2013, 3.

[2] R. F. Egerton in “Electron Energy-Loss Spectroscopy in the Electron Microscope“, Springer (New York), 3rd Ed., 2011.

[3] E. P. Bellido et al., Microsc. Microanal., 2014, 20, 767; V. Keast and M. Bosman, Microscopy research and technique, 2007, 70, 211; S. Lazar et al., Ultramicroscopy, 2006, 106, 1091.

[4] O. L. Krivanek et al., Nature, 2014, 514, 209-212

[5] SuperSTEM is the UK EPSRC National Facility for Aberration-Corrected STEM, supported by the Engineering and Physical Science Research Council. PZE acknowledges support from the Laboratory Directed Research and Development Program at Pacific Northwest National Laboratory. WPH is supported by the US Department of Energy, Office of Science, Office of Basic Energy Sciences, Division of Chemical Sciences, Geosciences & Biosciences.


Patricia ABELLAN (Daresbury, United Kingdom), Patrick Z. EL-KHOURY, Fredrik S. HAGE, Josh COTTOM, Alan G. JOLY, Wayne P. HESS, Rik BRYDSON, Quentin M. RAMASSE
12:00 - 12:15 #5953 - MS07-OP302 How dark are dark plasmon modes - a correlative EELS and CL study on lithographed silver nanodisks.
How dark are dark plasmon modes - a correlative EELS and CL study on lithographed silver nanodisks.

Plasmonic nanostructures enable the concentration of light to the deep subwavelength regime and, thus, are the topic of intense fundamental and application oriented research. Nanoparticles acting as optical antennas are well known for their nanoscale mode volumes, due to the excitation of localized plasmon modes. In this context electron energy-loss spectroscopy (EELS) in a transmission electron microscope (TEM) became a powerful technique as it enables to map the full modal spectrum of plasmon eigenmodes with unprecedented high spatial resolution [1–3]. Beside EELS, Cathodoluminescence (CL) has also recently been used to gain information about the optical response taking advantage of the same high spatial resolution in a TEM [4]. While it is stated that EELS is linked to the full photonic local density of states (LDOS), the CL signal is related to the radiative LDOS [5].

In this work we present a combined EELS/CL study of plasmon eigenmodes on silver nanodisks, using fast electrons in a TEM. In particular we compare the differences of the EELS and CL response using experimental and simulated data. Precise variation of the disk size is achieved by means of electron beam lithography (Figure 1a), enabling a comprehensive study of plasmon excitations on silver nanodisks.

From theoretical considerations it is known, that for certain particle geometries (and therefore for specific surface charge distributions) there exist so called dark modes, which are “invisible” to photons but “visible” to electrons, and therefore can be measured with EELS but not with light [6]. Here we discuss how dark these dark modes are comparing EELS and CL (figure 1b+c). In particular, radial breathing modes (C in figure 1b+c) were predicted to be dark modes [6], although we will show how comparison between EELS and CL can mitigate this statement. Additionally, limitations for the theoretical predictions will be discussed, when the particle size is increased and therefore retardation effects become more important. In this case we show that dark modes are getting brighter. Furthermore symmetry breaking by the excitation source itself, a focused fast electron beam, will be discussed.

 

[1]          Nelayah et al., Nat. Phys. 2007, 3, 348−353.

[2]          Koh et al., Nano Lett. 2011, 11, 1323−1330.

[3]          Schmidt et al., Nat. Commun. 2014, 5, 4604.

[4]          Yamamoto et al., Phys. Rev. B 2001, 64, 205419.

[5]          Losquin et al., ACS Photonics 2015, 2, 1619–1627.

[6]          Schmidt et al., Nano Lett. 2012, 12, 5780−5783.

 

This research has received funding from the European Union within the 7th Framework Program [FP7/2007-2013] under Grant Agreement no. 312483 (ESTEEM2). We acknowledge support by the Austrian Science Fund FWF under project P21800-N20, the SFB F49 NextLite, and NAWI Graz.


Franz-Philipp SCHMIDT (Graz, Austria), Arthur LOSQUIN, Ferdinand HOFER, Joachim R. KRENN, Mathieu KOCIAK
12:15 - 12:30 #6630 - MS07-OP306 Systematic analysis of plasmon excitations and coupling by lithographic structure patterning and fast, monochromated STEM-EELS mapping.
MS07-OP306 Systematic analysis of plasmon excitations and coupling by lithographic structure patterning and fast, monochromated STEM-EELS mapping.

High energy resolution electron energy-loss spectroscopy (EELS) is now a recognised technique for mapping localized surface plasmon resonances and measuring their resonant energies with a nanometric spatial resolution [1–3]. In contrast to light-based techniques it can further excite and map high order harmonics that are optically forbidden. Here we move on from the study of isolated or tandem plasmonic structures randomly deposited on TEM grids, or more complex structures painstakingly patterned by FIB, to a fast, systematic EELS mapping of precisely patterned Au and Ag films on Si3N4 membranes. Following an electron lithography-based preparation, the spatial distributions and mode energies of plasmon resonances and coupling are studied in function of well-controlled variations in structure dimensions.

The measurements are made in STEM-EELS mode using a FEI Titan Themis 60-300 with Gatan Digiscan and GIF Quantum ERS spectrometer. The combination of the X-FEG gun and monochromator gives a sub-nm incident beam with 100–110 meV FWHM of the zero-loss peak and a current of up to 240–250 pA. A fundamental need of the work is that the plasmon excitation can be measured both in the pure Si3N4 membrane regions and in the metal film regions. To this end, a high tension of 300 kV is used because, by reducing the relative intensity of bulk plasmon scattering from the metal films, it improves surface plasmon excitation signal to noise. EELS data are normalized by the zero-loss intensity to give the true projected plasmon distribution, without “shadowing” by the metal film [4]. With the fast spectrum imaging mode and high beam current, dwell times are only 0.2–0.25 ms per pixel, allowing us to acquire maps with >105 pixels (e.g. 600 x 600 px) in < 10 minutes per map.

Applying this fast mapping with high spatial sampling to the lithographically-based structures of known layout and dimension gives a highly time-efficient method for studying plasmonic excitations in nanophotonic structures. Figure 1 shows example plasmon resonance low-loss EELS spectra and intensity maps. Parts (a–d) & (e–f) treat the well known plasmonic structures of a silver wire and nano-triangle. Owing to the energy resolution and good signal to noise ratio, there is no need to perform systematic deconvolution of the data to reveal plasmon excitations, even for modes at < 0.5 eV energy loss. High order multipoles are additionally well resolved for both non-penetrating and penetrating trajectories, such as the 2.8 eV breathing mode of the nano-triangle.

Figure 1 (g–h) shows data from more complex coupled gold heptamer apertures. We probe the effect of a nanoscale defect: a small 20 nm size gap in one of the heptamer arms. This feature induces the appearance of an additional low energy mode at 0.84 eV, and affects both the symmetry and intensity of higher order modes. This demonstrates how systematic study of varying geometries allows for in-depth analysis of plasmon resonances.

These experimental studies are combined with modeling of the excitations using a novel “in house” method which aids interpretation of multi-body interactions by simulating EELS spectra using the properties of plasmonic structures, and not the work done on electrons [5]. The simulations and experiments have a symbiotic relationship, with the modeling used to interpret experimental data, and the experimental data used to guide the modeling (e.g. for peak resonance values). Nevertheless, our experimental approach is significantly quicker than the modeling. While so far it is primarily applied to the systematic study of particles and apertures, in the future it will be used to explore the optical excitations of novel nanophotonic structures and materials.

 

References and Acknowledgements

[1] J. Nelayah et al., Nature Phys. 3 (2007) 348–353.

[2] M. Bosman et al., Nanotechnology 18 (2007) 165505.

[3] F.J. García de Abajo, Rev. Modern. Phys. 82 (2010) 209–275.

[4] N. Le Thomas et al., Phys. Rev. B 87 (2013) 155314.

[5] G.D. Bernasconi et al., J. Opt. Soc. Am. B 33 (2016) 768–779.

We thank the staff of the Center of Micro/Nanotechnology (CMI) of EPFL for support. This research was in part funded by the European Commission (FP7-ICT-2011-7, NANO-VISTA, under Grant Agreement No. 288263).


Valentin FLAURAUD, Gabriel BERNASCONI, Jérémy BUTET, Olivier MARTIN, Jürgen BRUGGER, Duncan ALEXANDER (Lausanne, Switzerland)
Salle Gratte Ciel 1&2

"Monday 29 August"

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IM5-I
10:30 - 12:30

IM5: Quantitative imaging and image processing
SLOT I

Chairpersons: Joanne ETHERIDGE (Director) (Chairperson, Melbourne, Australia), Jean-Christophe OLIVO-MARIN (Chairperson, Paris, France)
10:30 - 11:00 #6670 - IM05-S44 Retrieving atomic structure from dynamical rocking curve measurements in both real and reciprocal space.
Retrieving atomic structure from dynamical rocking curve measurements in both real and reciprocal space.

Transmission electron microscopy (TEM) data, in particular high-resolution TEM and conventional electron diffraction has the reputation of being not easily interpretable in a quantitative manner in terms of the object being probed by the fast electrons. The reason for this lies in the fact that multiple scattering makes the detected signal a non-linear function of the scattering potential. In cases where the structure is approximately known, refinement of structure factors from convergent beam electron diffraction (CBED) data [1] or atom positions from HRTEM images [2] is possible. But the ab-initio inversion of multiple scattering to recover the structure of an unknown object has not yet been shown to work in a routine manner for experimental data. Structure determination approaches thus typically revert to techniques which collect tilt-averaged data, such as precession electron diffraction (PED) and scanning transmission electron microscopy (STEM) with a convergent probe. Integrating the signal over a range of different relative orientations between object and electron beam wave vector averages over different multiple scattering conditions – however, a large amount of structural information encoded in the multiple scattering signal gets lost, including valuable information about the object’s 3D structure [3].  

Fig. 1 demonstrates that in the case of experimental large-angle rocking-beam electron diffraction (LARBED) data [4], i.e. diffraction data for a large range of beam tilts (about 20 times larger than possible in conventional CBED of silicon), the projected potential can be recovered by straight forward gradient optimization from a starting guess in which all structure factors were initialized to the same value, i.e. initially, all Ug = (0.01 + 0.01i) Å-2 [5]. Although rocking curves of only 121 diffraction spots were measured, 456 structure factors could be determined from this data, since, all possible difference vectors between reflections extracted from the diffraction pattern were also included in the dynamical diffraction calculation.

Although CBED and HRTEM are very different modes of operation of the microscope, the multiple scattering contribution to the signal in tilt series of HRTEM images allows us to retrieve the 3D scattering potential [6], where the position and height of peaks allows direct interpretation as atom species and positions (see Fig. 2). This inversion of multiple scattering is based on an interpretation of the multislice algorithm as an artificial neural network that is taught by feeding it TEM data recorded under different experimental conditions. This can be HRTEM tilt series, ptychography data sets, or scanning confocal electron microscopy (SCEM) data [7].[8]

[1] J.M. Zuo, M. Kim, M. O'Keeffe, and J C.H. Spence, Nature 401 (1999) p. 49.
[2] G. Möbus, M. Rühle, Ultramicroscopy 56 (1994) 54-70
[3] R.S. Pennington, W. Van den Broek, C.T. Koch, Phys. Rev. B 89 (2014) 205409
[4] C.T. Koch, Ultramicroscopy 111 (2011) 828.
[5] F. Wang, R.S. Pennington, C.T. Koch (2016) submitted.
[6] W. Van den Broek and C.T. Koch, Phys. Rev. Lett. 109 (2012) p. 245502.
[7] W. Van den Broek and C.T. Koch, Phys. Rev. B 87 (2013) 184108
[8] The authors acknowledge funding from the German Research Foundation (DFG) as well as the Carl-Zeiss Foundation.


Christoph KOCH (Berlin, Germany), Wouter VAN DEN BROEK, Feng WANG, Robert PENNINGTON
Invited
11:00 - 11:15 #6511 - IM05-OP112 Efficient and quantitative phase imaging in two- and three-dimensions using electron ptychography in STEM.
Efficient and quantitative phase imaging in two- and three-dimensions using electron ptychography in STEM.

Historically, the scanning transmission electron microscope (STEM) has not been widely used for phase contrast imaging because the small bright-field detector required makes use of only a small fraction of the incident electrons and is therefore inefficient with respect to dose.  This limitation has hindered the efficient imaging of light elements in STEM.  Alternative modes also have limitations.  For example, annular dark-field (ADF) imaging of graphene only makes use of a few percent of the incident electrons, and annular bright-field imaging (ABF) requires lens aberrations to form an effective phase plate to get contrast from weakly scattering objects.

Electron ptychography in the STEM was first demonstrated more than 20 years ago in the context of improving image resolution [1].  At that time, the image field of view was restricted by the limitations of the camera technology and data handling technology.  Here we make use of the pnCCD (S)TEM camera, a direct electron pixelated detector from PNDetector, mounted on the JEOL ARM200-CF aberration corrected microscope. The detector has a grid of 264x264 pixels and operates at a speed of 1000 frames-per-second (fps). The detector can achieve a speed of up to 20,000 fps through binning/windowing. ADF images can be recorded simultaneously, as shown by the schematic in Fig. 1.

The resulting 4D data set is formed of a series of coherent convergent beam diffraction patterns recorded as a function of illuminating probe position.  Here we explore how the bright-field and dark-field regions of scattering can be used to enhance the capabilities of STEM.  We compare a range of methods that can be used to form the phase image from this data set, including single side-band [2,3], Wigner distribution deconvolution [4] (used to produce Fig. 2) and ePIE [5]. Phase imaging using ptychography has a relatively simple transfer function [3] and also provides an inherent filter of image noise without reducing the signal strength to form high quality phase images (Fig. 2).  Furthermore, the four-dimensional data set is highly redundant and it is possible to detect and correct for residual aberrations in the image. 

The ability to deconvolve lens aberrations can further be used to extract three-dimensional information from a single STEM image acquisition scan.   This is achieved by reconstructing the phase image at a specific depth in the sample, which can be performed even though the microscope may not have been focused at that depth (Fig. 3).  Finally, we explore the potential for using information outside the bright-field disc to enhance STEM imaging.

[1] P.D. Nellist, B.C. McCallum and J.M. Rodenburg, Nature 374 (1995) 630-632.

[2] T.J. Pennycook et al., Ultramicroscopy 151 (2015) 160-167.

[3] H. Yang et al., Ultramicroscopy 151 (2015) 232-239.

[4] J.M. Rodenburg and R.H.T. Bates, Philosophical Transactions of the Royal Society of London A, 339 (1992) 521-553.

[5] M.J. Humphry, B. Kraus, A.C. Hurst, A.M. Maiden, J.M. Rodenburg, Nat Commun, 3 (2012) 730.

[6] The authors acknowledge funding from the EPSRC through grant number EP/M010708/1.


Peter NELLIST (Oxford, United Kingdom), Hao YANG, Lewys JONES, Gerardo MARTINEZ, Reida RUTTE, Benjamin DAVIS, Timothy PENNYCOOK, Martin SIMSON, Martin HUTH, Heike SOLTAU, Lothar STRUEDER, Ryusuke SAGAWA, Yukihito KONDO, Martin HUMPHRY
11:15 - 11:30 #6213 - IM05-OP109 Atom-Resolved STEM Imaging Using a Segmented Detector.
Atom-Resolved STEM Imaging Using a Segmented Detector.

    In scanning transmission electron microscopy (STEM), differential phase contrast (DPC) imaging has been developed to visualize the local electromagnetic field distribution in materials at medium resolution [1, 2]. The electromagnetic field deflects the incident electron beam, and this deflection can be measured by taking the difference between signals detected in opposing detector segments. Recent rapid progress in high-sensitive segmented detectors has enabled DPC STEM imaging to be performed at atomic-resolution [3]. However, DPC STEM images are sensitive to thickness and defocus, because dynamical scattering strongly affects DPC imaging of crystals in zone axis orientations [4]. It thus remains a challenge to develop a practical imaging technique at atomic-resolution with the segmented detector.

    Fig. 1 shows images of SrTiO3 simultaneously obtained by different segments on a new segmented annular all field detector (SAAF2) installed in an aberration-corrected STEM (JEOL JEM-300F, 300kV). The relative orientation of the detector and the crystal structure is shown in Fig. 2. The images were at a defocus value of -3.7 nm relative to the defocus condition giving maximum contrast in annular dark field (ADF) imaging. These 512×512 pixel images were recorded with a dwell time of 38 µs per pixel, so the total imaging time is about 10 seconds. Each segment image can be qualitatively interpreted by electron beam deflection due to electric field from nuclei, including from the light oxygen atomic columns, though dynamical effects should be taken into account. According to image simulations, the DPC image appearance is largely unchanged with sample thickness if a defocus value is selected to obtain the highest contrast DPC image. This suggests that DPC STEM imaging at atomic resolution with a proper defocus value may be a new robust imaging mode that enables visualization of atomic column positions, including for light elements. Furthermore, this new imaging mode may contain information on charge redistribution due to charge transfer or orbital hybridization.

    In addition, we have found that the detector is sensitive enough to allow both segmented annular dark field imaging and DPC STEM imaging of single atoms to be performed. The details will be discussed in the presentation.

 

References

[1] J. N. Chapman et al., Ultramicroscopy 3, 203 (1978).

[2] M. Lohr et al., Ultramicroscopy 117, 7 (2012).

[3] N. Shibata et. al., Nat. Phys. 8, 611 (2012).

[4] R. Close et. al., Ultramicroscopy 159, 124 (2015).

[5] This work was supported by PRESTO and SENTAN, JST, and the JSPS KAKENHI Grant number 26289234. A part of this work was supported by Grant-in-Aid for Scientific Research on Innovative Areas (25106003). A part of this work was conducted in the Research Hub for Advanced Nano Characterization, The University of Tokyo, under the support of "Nanotechnology Platform" (Project No.12024046) by MEXT, Japan. This research was supported under the Discovery Projects funding scheme of the Australian Research Council (Project No. DP110101570).


Takehito SEKI (Tokyo, Japan), Gabriel SANCHEZ-SANTOLINO, Nathan LUGG, Ryo ISHIKAWA, Scott D. FINDLAY, Yuichi IKUHARA, Naoya SHIBATA
11:30 - 11:45 #5246 - IM05-OP104 ISTEM: A Realisation of Incoherent Imaging for Ultra-High Resolution TEM beyond the Classical Information Limit.
ISTEM: A Realisation of Incoherent Imaging for Ultra-High Resolution TEM beyond the Classical Information Limit.

The ISTEM (Imaging STEM) method [Phys. Rev Lett. 113, 096101(2014)] presented here constitutes a novel way for the realisation of TEM imaging with spatially incoherent illumination. It is well-known that such incoherent image formation allows for an increased resolution and higher robustness towards chromatic aberrations compared to coherent illumination as used in conventional TEM (CTEM). This has been realised in scanning TEM (STEM) via reciprocity, which however suffers from other resolution-limiting factors such as scan noise or the finite extent of the electron source.

The ISTEM mode circumvents these problems entirely. It combines STEM illumination with CTEM imaging as illustrated in Fig. 1: A camera is used to acquire images formed by the focused electron probe that is scanning over the specimen while the imaging system is in imaging mode. With an exposure time chosen equal to the STEM scan time, the resulting image corresponds to a sum over the images of all probe positions. Because different specimen positions are illuminated at different times, the corresponding intensities are summed up incoherently. ISTEM is therefore a spatially incoherent imaging mode and benefits from the associated improvement of resolution. Beyond this simple explanation, the equivalence of the ISTEM illumination and CTEM with an extended and incoherent electron source can be furthermore rigorously shown mathematically within the mutual intensity formalism. From this, the gain of resolution can be intuitively understood in the limit of total incoherence, in which case the transfer is given by the autocorrelation of the coherent transfer function. The theoretical considerations also show that neither scan noise nor source size have any influence on ISTEM-images. Aberrations and defocus of the condenser system cancel out completely as well. ISTEM imaging is therefore independent from probe correction.

In simulative studies the capability of ISTEM to extend the point resolution beyond the diffraction limit, its robustness towards temporal incoherence and the resulting possibility to overcome the information limit are demonstrated. These calculations are confirmed by experimental ISTEM-micrographs of GaN in [11-20] and [1-100] projection, as presented in Fig. 3, which are found in good agreement with simulations. For the [1-100] direction neighbouring gallium and nitrogen columns at a distance of only 63 pm are resolved despite an information limit of 83 pm of the image-corrected FEI TITAN 80/300 G1 microscope used for the acquisition. The classical information limit is thereby clearly overcome by 24%.

A further study was conducted that compared the results of strain-state analysis from simulated ISTEM images of a strained InGaAs-crystal with annular dark-field and bright-field STEM micrographs simulated for a probe-corrected microscope. The results are displayed in Fig. 2. They promise a significant increase in precision for ISTEM compared to STEM, due to the immunity to both scan noise and source size clearly recognisable by the smaller error bars. This was experimentally confirmed by an ISTEM study of PbTiO3 in which the heavy Pb and TiO atomic columns as well as the lighter oxygen columns are clearly resolved  and the evaluation based on a parametrically fitted model yields a significantly increased precision for position measurement compared to aberration corrected STEM images which were acquired from the same sample area.

With the help of the principle of reciprocity, ISTEM can finally be made equivalent to any STEM mode by appropriate choice of objective and condenser aperture, with the difference that ISTEM images will show no scan noise whatsoever. This will allow for the realisation of e.g. annular bright-field STEM, holding out the prospect of ultra-high resolution imaging of even lightest elements.


Florian F. KRAUSE (Bremen, Germany), Marco SCHOWALTER, Thorsten MEHRTENS, Knut MÜLLER-CASPARY, Armand BÉCHÉ, Karel W. H. VAN DEN BOS, Sandra VAN AERT, Johan VERBEECK, Andreas ROSENAUER
11:45 - 12:00 #6649 - IM05-OP113 Dark-Field Imaging with Electron Backscatter Diffraction Patterns.
Dark-Field Imaging with Electron Backscatter Diffraction Patterns.

Dark-field (DF) imaging can be performed by selecting a specific diffracted beam in the selected area diffraction pattern in conventional transmission electron microscope (CTEM) or in the convergent beam electron diffraction pattern in scanning transmission electron microscopy (STEM) mode [1]. The resultant micrograph provides high intensity of the objects in the probed volume that diffract in this particular direction. In contrast, dark-field micrographs can be obtained in STEM mode by capturing the signal from a specific range of scattering angles, with the most representative example being the high-angle annular dark-field imaging (HAADF) [2]. This leads to a contrast mostly based on atomic number differences between the different objects analysed [3].

These techniques were developed originally for CTEM and STEM. Because DF based on scattering angles is technically easy to obtain in a scanning electron microscope (SEM) by collecting the transmitted/diffracted signals with an electron detector below the thin specimen, it has been implemented in SEMs seriously since several years. This permitted taking advantage of the high contrast and low beam damage obtained at low accelerating voltages STEM in the SEM is now routinely achieved with a spatial resolution close to 1 nm in field-emission SEMs [4]. Despite these new possibilities, DF imaging only based on diffracted beams has not been achieved yet in a SEM.

The mostly used diffraction technique in the SEM has been, since the discovery of Venables [5], electron backscatter diffraction (EBSD) which has a spatial resolution of roughly 20-30 nm and which needs a limited bulk surface preparation compared to CTEM or STEM. EBSD is assumed to be related to the electron channeling pattern (ECP) diffraction technique by the reciprocity theorem [6], although its angular resolution is, at this time, limited by the pixel resolution of the acquisition equipment. Figure 1 is a comparison between an ECP and an EBSP acquired at 20 kV from a [001] (001) silicon wafer. In this work, pseudo-Kikuchi patterns (EBSP) recorded via EBSD were stored and reprocessed by reporting pixels or clusters of pixels intensities from a specific location in a reference EBSP to reconstruct the final image (EBSD map). A resulting micrograph (called EBSD-DF image) was produced with a direct link to the diffracted beams in the EBSP and hence, to the crystallography of the sample, i.e., a DF image. The origin of the contrast is then similar to that of electron channeling contrast image (ECCI) as shown in Figure 2, in which EBSD-DF micrographs of an indented compressed iron specimen with different reflections are displayed. However, the post-acquisition processing is an invaluable advantage over ECCI because it allows generating multiple micrographs at the same time with only one set of EBSPs recorded in a beam raster fashion. This opens new ways of extracting and using the information contained in each EBSP and the main applications, at this point, are understanding deformation behaviors and interpretation [7] of channeling contrast [8].

References:

[1] D.B. Williams and C.B. Carter, Transmission electron microscopy: a textbook for materials science. 2009: Springer.

[2] S. Pennycook, Ultramicroscopy, 30 (1989), pp. 58-69.

[3] O.L. Krivanek et al, Nature, 464 (2010), pp. 571-574.

[4] P.G.Merli et al, Microscopy and Microanalysis, 9 (2003), pp. 142-143.

[5] J. Venables and C. Harland, Philosophical Magazine, 27 (1973), pp. 1193-1200.

[6] O.C. Wells, Scanning, 21 (1999), pp. 368-371.

[7] N. Brodusch, H. Demers, and R. Gauvin, Ultramicroscopy, 148 (2015), pp. 123-131.

[8] S. Kaboli et al, Journal of Applied Crystallography, (2015), 48, pp. 776-785.


Raynald GAUVIN (Montreal, Canada), Hendrix DEMERS, Nicolas BRODUSCH
12:00 - 12:15 #6372 - IM05-OP110 Accurate and precise measurement of cluster sizes in localisation microscopy images using the Rényi divergence.
Accurate and precise measurement of cluster sizes in localisation microscopy images using the Rényi divergence.

Localisation microscopy is a super-resolution imaging technique based on detecting randomly activated single molecules in a sequence of images. A super-resolution image is then reconstructed as a collection of discrete points, using all of the localised single molecule positions. Clustering analysis of these points can provide quantitative information about sample structure, size of features and/or their number. The information obtained from clustering analysis allows characterisation of the functions or properties of biological systems, for example examining signalling pathways in T-cells antigen receptors. However, quantitative analysis of clusters in localisation microscopy images is challenging because the clusters are usually small and surrounded by relatively high noise.

The Rényi divergence quantifies differences between two distributions (in this case the observed data and a reference distribution). Its sensitivity to the degree to which one distribution differed from another can be tuned with a scaling parameter α, which allows us to adapt its robustness to noise. We approximated the data distribution by counting all points which were positioned closer to each other than a set threshold and the reference distribution as all the points concentrated in a single cluster. Ripley's K function, which is widely used for performing localisation microscopy analysis, is a special case of the Rényi divergence.

Here we present a comparison of the accuracy and precision of cluster size measurement performed using the Rényi divergence and Ripley's K function. Initial tests involved establishing noise adaptability of the two analysis methods using simulated data sets with characteristics similar to experimental images (with increasing noise levels), and optimising the tunable parameter of the Rényi divergence. We find that the adaptability of the Renyi divergence method is a particular advantage when dealing with localisation microscopy data, in which characteristics can vary a great deal between datasets. 


Adela STASZOWSKA (London, United Kingdom), Patrick FOX-ROBERTS, Susan COX
12:15 - 12:30 #5957 - IM05-OP106 STEM imaging of atom dynamics: novel methods for accurate particle tracking.
STEM imaging of atom dynamics: novel methods for accurate particle tracking.

Developments in scanning transmission electron microscopy (STEM) have opened up new possibilities for time-resolved imaging at the atomic scale. Recent examples include a study of the diffusion of dopant atoms in semiconductors [1] and, using environmental STEM, in situ studies of catalytic reactions [2]. Rapid imaging of single atom dynamics brings with it a new set of challenges. High frame rates and long total acquisition times mean novel methods are needed for handling and processing “big data” sets. Further, the need for short exposure times leads to severe problems with noise, but by exploiting the spatial and temporal correlations between frames, it is possible to considerably improve the signal-to-noise ratio using a method known as singular value thresholding [3]. Crucially, by employing robust procedures to automatically estimate the noise and motion characteristics, it is possible to optimize the process with little user input (Figure 1a,b). The identity and positions of individual atoms in the denoised data can then be determined using a newly-developed intensity-based classification algorithm. Building on the theme of automation, the classifier can be trained using simulated STEM images to robustly process long image sequences, where manual identification would be prohibitive.

As an example, we have applied these methods to investigate the diffusive behaviour of copper atoms on the (110) surface of silicon. The noise removal and atom identification steps are used along with particle tracking software [4] to extract a set of atomic trajectories from a series of annular dark-field STEM images (Figure 1c-e). The form of these trajectories can be related to the underlying silicon substrate, as in Figure 1f, which suggests the existence of preferred pinning sites for copper atoms. The interaction between adatoms and the substrate can be explored with unprecedented spatio-temporal resolution using rapid imaging, and interpreted by modelling with density functional theory (DFT) calculations (Figure 1g). This highlights the potential for combining time-resolved STEM with theory, forming a powerful approach to investigating and understanding the dynamic behaviour of materials at the atomic scale.

References

[1] Ishikawa R, et al. (2014). Phys. Rev. Lett. 113, 155501.

[2] Gai P, et al. (2014). Chemical Physics Letters. 592, 355-359.

[3] Furnival T, Leary R, Midgley PA. (2016). Manuscript submitted.

[4] Chenouard N, et al., (2013). IEEE Trans. Pattern Anal. Mach. Intell., 35, 2736-2750.

The research leading to these results has received funding from the European Research Council under the European Union’s Seventh Framework Programme (FP7/2007-2013)/ERC grant agreement 291522-3DIMAGE.


Tom FURNIVAL (Cambridge, United Kingdom), Eric SCHMIDT, Rowan LEARY, Daniel KNEZ, Ferdinand HOFER, Paul D BRISTOWE, Paul A MIDGLEY
Salle Tête d'or 1&2

"Monday 29 August"

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LS6-I
10:30 - 12:30

LS6: Interactions micro-organism-host
SLOT I

Chairpersons: Ilaria FERLENGHI (Structural Based Antigen Design) (Chairperson, Siena, Italy), Kay GRUNEWALD (Chairperson, Oxford, United Kingdom), Olivier LAMBERT (Chairperson, Bordeaux, France)
10:30 - 11:00 #8391 - LS06-S19 A huge but elusive macromolecular cage in enterobacterial stress response as seen by cryoEM and X-ray crystallography.
A huge but elusive macromolecular cage in enterobacterial stress response as seen by cryoEM and X-ray crystallography.

The E. coli inducible lysine decarboxylase LdcI is an important acid stress response enzyme, whereas the AAA+ ATPase RavA is involved in multiple stress response pathways. A complex between these two proteins is thought to counteract acid stress under starvation in E. coli. We solved the crystal structure of the RavA monomer and combined it with a negative stain EM reconstruction of the RavA-ADP hexamer (El Bakkouri et al., 2010). We also determined the crystal structure of the LdcI double pentamer (Kanjee et al., 2011). While these structures provided important insights into the functions of these individual proteins, the design principles of the LdcI-RavA complex appeared even more enigmatic because it was difficult to envision how a decamer can bind a hexamer.  CryoEM analysis allowed us to fit together the pieces of the jigsaw and revealed that the LdcI-RavA complex is a surprising macromolecular cage of the size of a ribosome formed by two LdcI decamers and five RavA hexamers (Malet et al., 2014). We identified molecular determinants of this interaction and specific elements essential for complex formation, as well as conformational rearrangements associated with the pH-dependent LdcI activation and with the RavA binding (Malet et al., 2014; Kandiah et al., 2016). Moreover, we uncovered differences between the LdcI and its close paralogue, the second E. coli lysine decarboxylase LdcC thought to play mainly a biosynthetic role, finally explaining why only the acid stress response enzyme is capable of binding RavA and forming the cage. Multiple sequence alignment coupled to a phylogenetic analysis reveals that certain enterobacteria exert evolutionary pressure on the lysine decarboxylase towards the cage-like assembly with RavA, implying that this complex may have an important function under particular stress conditions (Kandiah et al., 2016). Research on structure-functional relationships of this system by a combination of cryoEM, super-resolution fluorescence microscopy and other structural, biochemical, biophysical and cell biology techniques is on-going.

Kanjee, U. et al. EMBO J. 30, 931–944 (2011).

El Bakkouri, M. et al. Proc. Natl. Acad. Sci. U. S. A. 107, 22499–22504 (2010).

Malet, H. et al. eLife 3, e03653 (2014).

Kandiah, E. et al. Sci Rep. 6, 24601 (2016).

Acknowledgements

We thank Guy Schoehn for establishing and managing the cryo-electron microscopy platform and for providing training and support. We are grateful to all members of the Houry group and the Gutsche team who were or currently are involved in sample preparation and analysis for this study. For electron microscopy, this work used the platforms of the Grenoble Instruct center (ISBG; UMS 3518 CNRS-CEA-UJF-EMBL) with support from FRISBI (ANR-10-INSB-05-02) and GRAL (ANR-10-LABX-49-01) within the Grenoble Partnership for Structural Biology (PSB). The electron microscope facility (Polara electron microscope) is supported by the Rhône-Alpes Region (CIBLE and FEDER), the FRM, the CNRS, the University of Grenoble Alpes and the GIS-IBISA. DC is the recipient of the Grenoble Alliance for Integrated Structural and Cell Biology (GRAL) PhD fellowship. This work was supported by the ANR-12-JSV8-0002 and the ERC 647784 grants to IG, the CIHR MOP-130374 to WAH, the ANR-10-LABX-49-01 and the ANR-11-LABX-0003-01.


Eaazhisai KANDIAH, Hélène MALET, Diego CARRIEL, Julien PERARD, Maria BACIA, Walid A HOURY, Sandrine OLLAGNIER DE CHOUDENS, Sylvie ELSEN, Irina GUTSCHE (IBS, Grenoble)
Invited
11:00 - 11:30 #8370 - LS06-S20 Structure of the bacterial type 3 secretion system in action.
Structure of the bacterial type 3 secretion system in action.

Pathogenic bacteria commonly use the conserved type 3 secretion system (T3SS or Injectisome) to deliver virulence factors into the target eukaryotic cells in order to manipulate their functions. Injectisome is a multi-protein nanomachine assembled at the bacterial membranes containing the periplasmic basal body, cytoplasmic sorting platform and export apparatus1. A hollow needle extends from the periaplasmic part to the extracellular face serves as a channel for the secreted molecules.  The high resolution structure of the components of the injectisome is well understood: structure of the basal body at subnanometer resolution2 in combination with computational molecular analysis3 demonstrated the inter-subunit interaction interfaces and suggested a conserved oligomerization mechanism for the assembly. The cytoplasmic ATPase SctN (according to the general nomenclature) is structurally similar to the F- and V- type ATPases and is believed to be responsible for detachment of chaperones and unfolding the exported substrates4.

Recent fluorescent studies in Yersinia enterocolitica showed turnover of SctQ; the turnover was faster for secreting injectisomes therefore the injectisome was suggested to be a highly dynamic nanomachine5.  Additionally, upon activation of secretion newly formed injectisomes are established next to the existing ones6. Interestingly, trapping the exported substrate in the isolated needle complex (made of the basal body and the needle) results in only small conformational changes distant from the secretion path7. It is highly interesting to visualize the mechanics of substrate secretion happening inside the cell and understand the intermediate steps of this exciting process.

During my talk I will present the structural analysis of the injectisomes in Yersinia and Chlamydia performed by cryo electron tomography and subtomogram averaging.  Surprisingly, the basal bodies of injectsomes of Yersinia enterocolitica can vary in length up to 20% 8. This flexibility it attributed to the flexible domains of the proteins of the basal body. In Chlamydia the basal bodies of injectisomes strongly contract upon contact with the host cell membrane. This contraction is coupled to a structural stabilization of the cytoplasmic part of the injectisome9. This “pumping action” likely constitutes a general mechanism related to the injection of effectors. Higher resolution structural analysis in situ combined with mutagenesis will generate the clearer understanding of the mechanics of the T3SS action.

 

References: 

1.         Diepold, A. & Armitage, J. P. Type III secretion systems: the bacterial flagellum and the injectisome. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 370, (2015).

2.         Schraidt, O. & Marlovits, T. C. Three-dimensional model of Salmonella’s needle complex at subnanometer resolution. Science 331, 1192–1195 (2011).

3.         Bergeron, J. R. C. et al. A refined model of the prototypical Salmonella SPI-1 T3SS basal body reveals the molecular basis for its assembly. PLoS Pathog. 9, e1003307 (2013).

4.         Akeda, Y. & Galán, J. E. Chaperone release and unfolding of substrates in type III secretion. Nature 437, 911–915 (2005).

5.         Diepold, A., Kudryashev, M., Delalez, N. J., Berry, R. M. & Armitage, J. P. Composition, formation, and regulation of the cytosolic c-ring, a dynamic component of the type III secretion injectisome. PLoS Biol. 13, e1002039 (2015).

6.         Kudryashev, M. et al. Yersinia enterocolitica type III secretion injectisomes form regularly spaced clusters, which incorporate new machines upon activation. Mol. Microbiol. 95, 875–884 (2015).

7.         Radics, J., Königsmaier, L. & Marlovits, T. C. Structure of a pathogenic type 3 secretion system in action. Nat. Struct. Mol. Biol. 21, 82–87 (2014).

8.         Kudryashev, M. et al. In situ structural analysis of the Yersinia enterocolitica injectisome. eLife 2, e00792 (2013).

9.         Nans, A., Kudryashev, M., Saibil, H. R. & Hayward, R. D. Structure of a bacterial type III secretion system in contact with a host membrane in situ. Nat. Commun. 6, 10114 (2015).


Mikhail KUDRYASHEV (Frankfurt am Main, Germany)
Invited
11:30 - 11:45 #5273 - LS06-OP027 Characterisation of Trypanosoma spp. in Australian wildlife.
Characterisation of Trypanosoma spp. in Australian wildlife.

The genus Trypanosoma comprises numerous species of flagellated vector-borne protozoa that parasitise the blood and tissues of vertebrates. They are ubiquitous in terms of their geographical distribution and host range. In mammals, most species of Trypanosoma have been described from wildlife yet apart from their taxonomy, we know very little about the host parasite relationship, particularly those species in Australia.

Most of what is known about their host parasite relationships, life history, and developmental biology has been obtained from studies on the two species that invade cells and infect humans - T. brucei and T. cruzi - species endemic in Africa and South America respectively, and which are major causes of disease and death in humans and domestic animals. T. brucei is the cause of sleeping sickness as a result of its association with the nervous system, whereas T. cruzi is the cause of Chagas disease that results in cardiac, neurological, and digestive disorders.

Importantly, an Australian species - T. copemani G2 - has also been found to invade cells, thus demonstrating a pathogenic potential previously not associated with trypanosomes from Australia. Recently several new species of Trypanosoma in Australian marsupials (T. copemani (G1 & G2), T. vergrandis, and T. noyesi) have been characterised. These have varying affinities to T. cruzi, including surprisingly similar genetic relationships (e.g. close genetic link of T. noyesi and T. cruzi) and behavioural traits (e.g. cellular invasion by both T. copemani and T. cruzi). Such observations not only raise concerns about the impact of Australian trypanosomes on wildlife health and conservation but also in terms of biosecurity and human health given the potential for local transmission of imported cases of Chagas disease.

Here we present correlative data across a range of length scales demonstrating the ongoing characterisation of several Trypanosoma spp. from Australian wildlife. In particular we have used live cell imaging to show host cell-pathogen interactions (Figure 1), scanning (SEM) (Figure 2) and transmission (TEM) (Figure 3) electron microscopy for structural analysis, and Slice and ViewTM focussed ion beam-scanning electron microscopy (FIB-SEM)(Figure 4) to begin to image key structural features (e.g. kinetoplast, flagellum) at high resolution in 3-dimensions.

Together these data are i) providing a greater understanding of the pathogenic potential and host-parasite relationships of trypanosomes in Australian marsupials; ii) allowing for identification of biosecurity issues relating to potential local hosts and transmission of exotic species; and iii) generating information about the role of trypanosomes as a potential cause of disease in threatened and endangered Australian marsupials.

Acknowledgements: The authors acknowledge use of the facilities at the Centre for Microscopy, Characterisation & Analysis, UWA, which is funded by State and Commonwealth governments; and funding from the West Australian Government's State NRM Program.


Crystal COOPER, Andrew THOMPSON, Adriana BOTERO, Peta CLODE (Crawley, Australia)
11:45 - 12:00 #5210 - LS06-OP026 Flow cytometry, and Transmission electron microscopy; two valuable tools used in an innovative approach to isolate and describe new microorganisms.
Flow cytometry, and Transmission electron microscopy; two valuable tools used in an innovative approach to isolate and describe new microorganisms.

Flow cytometry and transmission electron microscopy are two reliable techniques used for decades in microbiology. In parallel, amoebal pathogens like giant viruses, and chlamydiae are of a big interest for the scientific community. Their ubiquity and diversity made by them a hot spot in environmental microbiology. The isolation of these pathogens of protists is the key to understand their evolution, their respective biotopes, and their potential or hidden pathogenicity. The co-culture is the routinely used tool to isolate these microorganisms. Here we report the association of flow cytometry and electron microscopy to the co-culture in a high throughput method capable of describing new isolates. Flow cytometry is used to detect and sort lytic or non-lytic amoebal pathogens and electron microscopy characterizes the developmental stages and phenotypic features of the new isolates. These improvements based on enrichment systems, targeted use of antibiotics and high-throughput methods associating FACS to TEM which are highly sensible regarding the old techniques, brought extreme benefits to the giant viruses and chlamydiae study and research fields. 


Jacques BOU KHALIL (MARSEILLE)
12:00 - 12:30 #6220 - LS06-S21 Soft X-Ray cryo-tomography reveals ultrastructural alterations of the host cell during Hepatitis C infection.
Soft X-Ray cryo-tomography reveals ultrastructural alterations of the host cell during Hepatitis C infection.

Chronic hepatitis C virus (HCV) infection causes severe liver disease in millions of humans worldwide. Pathogenesis of HCV infection is strongly driven by a deficient immune response of the host, although intersection of different aspects of the virus life cycle with cellular homeostasis is emerging as an important player in the pathogenesis and progression of the disease.

Cryo soft X-ray tomography (cryo-SXT) was performed to investigate the ultrastructural alterations induced by the interference of hepatitis C virus (HCV) replication with cellular homeostasis. Native, whole cell, three-dimensional maps were obtained in HCV replicon-harboring cells and in a surrogate model of HCV infection at 40nm resolution. Tomograms from HCV-replicating cells show blind-ended endoplasmic reticulum (ER) tubules with pseudo spherical extrusions and marked alterations of mitochondrial morphology that correlated topologically with the presence of ER alterations, suggesting a short-range influence of the viral machinery on mitochondrial homeostasis.

Both mitochondrial and ER alterations could be reverted by a combination of sofosbuvir/daclatasvir, which are clinically approved direct-acting antivirals (DAAs) for the treatment of chronic HCV infection. In addition to providing structural insight into cellular aspects of HCV pathogenesis our study illustrates how cryo-SXT is a powerful three-dimensional wide-field imaging tool for the assessment and understanding of complex cellular processes in a setting of near native whole hydrated cells. Our results also constitute a proof of concept for the use of cryo-SXT as a platform that enables determining the potential impact of candidate compounds on the ultrastructure of the cell that may  assist drug development at a preclinical level.


Ana Joaquina PEREZ-BERNA (Barcelona, Spain), Maria Jose RODRÍGUEZ, Andrea SORRENTINO, Francisco Javier CHICHON, Martina FRIESLAND, Jose Lopez CARRASCOSA, P GASTAMINZA, Eva PEREIRO
Invited
Salon Tête d'Or

"Monday 29 August"

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LS4-I
10:30 - 12:30

LS4: Membrane Interaction
SLOT I

Chairpersons: Hans HEBERT (Chairperson, Huddinge, Sweden), Aurélien ROUX (Chairperson, Genève, Switzerland)
10:30 - 11:00 #8753 - LS04-S13 New insights into plasma membrane organization from super-resolution STED microscopy.
New insights into plasma membrane organization from super-resolution STED microscopy.

Plasma membrane interactions such as the transient protein-protein or protein-lipid complexes, the formation of lipid nanodomains (often denoted “rafts”), or diffusional restrictions by the cortical cytoskeleton are considered to play a functional part in a whole range of membrane-associated processes. However, the direct and non-invasive observation of such structures in living cells is impeded by the resolution limit of >200nm of a conventional far-field optical microscope. Here we present the use of the combination of super-resolution STED microscopy with fluorescence correlation spectroscopy (FCS) for the disclosure of complex nanoscopic dynamical processes. By performing FCS measurements in focal spots tuned to a diameter of down to 30 nm, we have obtained new details of molecular membrane dynamics, such as of transient lipid-protein interactions and of diffusional restrictions by the cortical cytoskeleton. Further insights will be given for molecular dynamics in the plasma membrane of immune cells, specifically during T-cell activation.


Christian EGGELING (Oxford, United Kingdom)
Invited
11:00 - 11:30 #8742 - LS04-S14 Characterization of the plasma membrane dynamics during cell signaling processes investigated by spot variation fluorescence correlation spectroscopy (svFCS).
Characterization of the plasma membrane dynamics during cell signaling processes investigated by spot variation fluorescence correlation spectroscopy (svFCS).

The plasma membrane organization is highly heterogeneous as a result of the intrinsic molecular Brownian agitation and the vast diversity of membrane components. Selective interactions take place in the formation of local complex multicomponent assemblies of lipids and proteins on different time scales. Still, deciphering this lateral organization on living cells and on the appropriate length and temporal scales has been challenging but is crucial to advance our knowledge on the biological function of the plasma membrane.

Among the methodological developments made during the last decade, the spot variation FCS (svFCS), a fluorescent correlation spectroscopy (FCS)-based method, has allowed the significant progress in the characterization of cell membrane lateral organization at the sub-optical level, including to providing compelling evidence for the in vivo existence of lipid-dependent nanodomains (see for review )1.This method provides particular insight to identify possible molecular confinement occurring at the plasma membrane 1, 2. The svFCS is performed by changing the spot of illumination underfilling the back aperture of the objective 3. Theoretical models have been developed to predict how geometrical constraints such as the presence of adjacent or isolated domains affect the svFCS observations 4, 5.

We will illustrate how the investigations based on svFCS have provided compelling evidence for the in vivo existence of lipid-dependent nanodomains 2, 6, 7 and have allowed significant progress in the characterization of cell membrane lateral organization for different kind of receptors 8-10.

 

 

1. He, H.T. & Marguet, D. Annu Rev Phys Chem 62, 417-436 (2011).

2. Lenne, P.F. et al. EMBO J 25, 3245-3256 (2006).

3. Wawrezinieck, L., Lenne, P.F., Marguet, D. & Rigneault, H. P Soc Photo-Opt Inst 5462, 92-102 (2004).

4. Wawrezinieck, L., Rigneault, H., Marguet, D. & Lenne, P.F. Biophys J 89, 4029-4042 (2005).

5. Ruprecht, V., Wieser, S., Marguet, D. & Schutz, G.J. Biophys J 100, 2839-2845 (2011).

6. Lasserre, R. et al. Nat Chem Biol 4, 538-547 (2008).

7. Wenger, J. et al. Biophys J 92, 913-919 (2007).

8. Blouin, C.M. et al. Cell in press (2016).

9. Chakrabandhu, K. et al. EMBO J 26, 209-220 (2007).

10. Guia, S. et al. Sci Signal 4, ra21 (2011).

 


Sébastien MAILFERT, Yannick HAMON, Hai-Tao HE, Didier MARGUET (MARSEILLE CEDEX 9)
Invited
11:30 - 12:00 #7863 - LS04-S15 Electron microscopy approaches to studying lipid–protein interactions.
Electron microscopy approaches to studying lipid–protein interactions.

Membrane proteins play crucial roles in many cellular processes such as signaling, nutrient uptake and cell adhesion.  Although the lipid bilayer influences many aspects of membrane protein function, our understanding of lipid–protein interactions is limited.  In the first part of my talk, I will describe how electron crystallography of the water channel aquaporin-0 reconstituted with lipids into two-dimensional crystals can be used to address very basic questions in membrane biology, such as the driving forces that define lipid–protein interactions and the effects of hydrophobic mismatch.  In the second part, I will discuss how we use membrane proteins reconstituted into nanodiscs to make it possible to study lipid–protein interactions by single-particle cryo-electron microscopy.  In particular, I will discuss how the mechanosensitive channel MscS adapts to different lipid bilayers.


Thomas WALZ (New York, USA)
Invited
12:00 - 12:15 #4615 - LS04-OP021 How nanoparticles disturb the lipid bilayer vesicles.
How nanoparticles disturb the lipid bilayer vesicles.

 

Meriem Er-Rafik*,(1),Khalid Ferji (2), Olivier Sandre (2), Carlos M. Marques (1), Jean-Francois Le Meins (2), Marc Schmutz (1)

1. Institut Charles Sadron, Université de Strasbourg-CNRS UPR 22, 67034 Strasbourg, France

2. Laboratoire de Chimie des Polymères Organiques (LCPO), Université de Bordeaux, CNRS,  33607 Pessac, France

 

         Innumerous molecules and particles, from simply water to complex proteins or self-assembled small liposomal carriers, can frequently interact with the cell membrane with possible modification on it. Despite a constant increase of the variety of new particles or molecular assemblies, due to rapid progress in nanotechnology, the molecular features determining how is the membrane behaviour with respect to a given molecule are not yet elucidated.

            Here, we will present a new mechanism of the lipid bilayer of liposomes behaviour in presence of nanoparticles investigated by cryo-electron tomography. Cryo-electron microscopy is a relevant technique allowing not only to inspect the structure of the membrane, by resolving for instance the two leaflets of the bilayer, but reveals also geometric features of nanoparticles such as size and shape that play an important role for the potential interaction with lipid bilayer (fig. 1). Cryo-electron tomography resolve in 3D space the relative positions of particles and membranes, providing insight into the interplay between particle-lipid interactions and the ensuing bilayer transformations.

We wish to thank for the financial support the research association ANR (Agence Nationale de Recherche) of the project ANR-12-BS08-0018-01 and the French society of microscopy (SFµ).


Meriem ER-RAFIK (STRASBOURG)
12:15 - 12:30 #6815 - LS04-OP022 In vitro/ex vivo behavior of a new optical imaging agent targeting αVβ3 integrin.
In vitro/ex vivo behavior of a new optical imaging agent targeting αVβ3 integrin.

Introduction Integrin αvβ3 is usually expressed at low or undetectable levels in most adult epithelia, but it is highly upregulated in tumors and correlates with disease progression. Moreover, unlike in quiescent endothelium, αvβ3 is highly expressed in tumor-associated vessels.

RGD (Arg-Gly-Asp) peptides carry the minimal integrin-binding sequence and are well-known to bind preferentially to αvβ3. Thus, RGD-based strategies have been widely adopted to design targeted molecules for cancer therapy and/or diagnosis.

We synthesized a new cyclic RGD-based peptidomimetic conjugated with a NIR fluorophore intended for intrasurgical use during tumor resection, to allow proper identification of tumor margins and sparse metastases by optical imaging. We present here the in vitro/ex vivo characterization of this molecule, meant to define its specificity for the target receptor, its ability to enter the cells and its in vivo behavior after administration to mice. Cellular models were used to preliminarily characterize the effects and the fate of the molecule as it contacts the cells. Mouse tumor models were used to investigate the distribution of the molecule in tumors after in vivo administration.

Methods Fluorescence microscopy, flow cytometry and immunofluorescence assays were used to define the features of the interaction of our molecule with cells expressing different αvβ3 levels.

Results The in vitro characterization of the molecule in contact with adherent cells reveals that it is internalized into the endosomal compartment and that it interferes with αvβ3-mediated cell adhesion. The affinity to both αvβ3 and HSA of our fluorescent RGD-based probe, demonstrated by flow cytometry and microscopy, is suitable for its intended use.

The ex vivo analyses of probe distribution in tumor tissues after in vivo administration highlight its ability to accumulate into the tumor mass and its specificity to delineate tumor margins.

Conclusions Our fluorescent RGD-based molecule is a promising optical imaging probe for fluorescence-guided surgical resection of tumors characterized by variable expression of αvβ3 integrin.


Chiara BRIOSCHI (colleretto giacosa (TO), Italy), Federica CHIANALE, Alessia CORDARO, Giovanni VALBUSA, Federico MAISANO, Fabio TEDOLDI
Salle Gratte Ciel 3
14:00

"Monday 29 August"

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IM2-II
14:00 - 16:00

IM2: Micro-Nano Lab and dynamic microscopy
SLOT II

Chairpersons: Francisco José CADETE SANTOS AIRES (Chairperson, VILLEURBANNE CEDEX, France), Niels DE JONGE (Chairperson, Saarbrücken, Germany), Gerhard DEHM (Chairperson, Düsseldorf, Germany)
14:00 - 14:30 #8381 - IM02-S35 In situ TEM for understanding electrical and thermal transport properties on nano and atomic scales.
In situ TEM for understanding electrical and thermal transport properties on nano and atomic scales.

In situ electron microscopy allows studies of transport of charges and matter in complex structures as well as thermal properties. We can study mechanically and thermally induced changes of charge transport properties using holders designed to enable different stimuli allowing the direct observation and correlation between material structure and properties. The direct correlation between structure and properties on the small scale involving individual interfaces, defects and atoms provides access to new information about which microstructural constituents that are active in determining the material properties on the macro, micro, nano and atomic scale. This talk addresses examples of in situ electrical, mechanical and thermal studies. A few examples are briefly described below.

 

The nanoscale dimensions of semiconducting nanowires (NWs) provide extended strain relaxation capability between lattice-mismatched materials and enable the fabrication of single-NW p-i-n junction solar cells on low-cost substrates. Due to its sub-wavelength dimension, semiconductor NWs can function as optical antennas and exhibit a “self-concentrating” effect that enhances optical absorption. The strain relaxation capability and the enhanced absorption cross section make NWs potential candidates as highly efficient and low-cost solar cells. Due to the effects of  elastic strain applied on the electronic band structure the strain can be used to achieve NW-based photovoltaic devices with new functionality. We have studied the effect of mechanical strain on the electrical resistance of nanowires. Electron energy loss spectroscopy was used to study the effect of strain on the electronic structure with emphasis on the low energy loss interval of 0 to 50 eV. Electron beam induced current measurements were also performed to study the effect of strain on the diffusion length of the charge carriers [1].

 

Heating of a transmission electron microscopy (TEM) specimen can be performed in several parallel modes and this talk will address three types of heating modes and show experimental results from nanostructured materials. One mode is by resistive heating of a ring shaped support in contact with the circumference of the entire TEM sample. An additional mode is by use of a heating wire patterned on the TEM sample where the wire is contacted by leads fed through the TEM sample holder. The third mode is by active Joule heating of the nanostructure of study, such as carbon nanotubes, graphene, or metal nanowires. The purpose of having several parallel modes of heating is to enable the separation of temperature dependence, effects of self-Joule heating, effects of radiative heating and thermal transport. It is also important to be able to extract the three dimensional information about the geometry of the investigated structures [2].

 

 

1.   L. Zeng, T.K. Nordkvist, P. Krogstrup, W. Jäger and E. Olsson, “Mechanical strain induced nonlinearity of the electrical transport properties of individual GaAs nanowires”, in manuscript.

2.   N. Voskanian and E. Olsson, “Heating holder for in situ three dimensional transmission electron microscopy studies”, in manuscript.


Eva OLSSON (Gothenburg, Sweden)
Invited
14:30 - 14:45 #6823 - IM02-OP075 In-Situ Hydration of MgO Nanocrystals to amorphous Mg(OH)2 using Liquid Cell Transmission Electron Microscopy.
In-Situ Hydration of MgO Nanocrystals to amorphous Mg(OH)2 using Liquid Cell Transmission Electron Microscopy.

The hydration reaction of MgO to amorphous Mg(OH)2 is a model hydration reaction and is important to diverse research fields, ranging from catalysis to Earth Sciences. Although the bulk thermodynamics and surface energies of these phases are well studied,[1,2] real time and real space analysis of the reaction at ambient pressure is lacking. In this study, the hydration of MgO nanocrystals is studied at the single particle level, both in real space and in diffraction space using in-situ Transmission Electron Microscopy (TEM) at near-ambient pressure and temperature. Upon exposure to water vapor and the electron beam, the MgO nanocrystals react with H2O and convert to amorphous Mg(OH)2.

 

Real-time recordings of the hydration reaction reveal that the reaction starts at the MgO nanocrystal surface and proceeds inwards at a constant rate while the Mg(OH)2 shell expands outwards. The growth rate is found to be constant throughout the reaction. Furthermore, as the applied dose rate is increased, the growth rate increases accordingly. Possible mechanisms for the beam-promoted transformation are discussed, including the role of defect formation and migration at the interior and at the surface of the MgO nanocrystals, H2O diffusion towards the MgO surface, and the possible influence of beam-generated H2O dissociation products. Assemblies of converting MgO/Mg(OH)2 nanocrystals exhibited a reorganization of the assembly framework due to the solid volume increase (~100%) of each individual nanocrystal.

References

[1] de Leeuw, N.H., Watson, G.W., and Parker, S.C., J. Phys. Chem., 1995, 99 (47), 17 219-17 225

[2] Geysermans, P., Finocchi, F., Goniakowski, J., Hacquart, R., und Jupille, J., Phys. Chem. Chem. Phys., 2009, 11 (13), 2228-2233


Wessel VLUG (Amsterdam, The Netherlands), Oliver PLÜMPER, Michael KANDIANIS, Alfons VAN BLAADEREN, Marijn VAN HUIS
14:45 - 15:00 #6563 - IM02-OP071 In-situ studies of the dendritic yttria precursor nanostructures growth dynamics at elevated temperatures using liquid-cell transmission electron microscopy.
In-situ studies of the dendritic yttria precursor nanostructures growth dynamics at elevated temperatures using liquid-cell transmission electron microscopy.

Yttria, a host for heavy rare earth elements, is an important up-conversion material, able to convert lower energy near-infrared light into higher energy visible light, opening the avenue for a wide spectrum of applications from laser technology, photovoltaics to theranostics [1,2]. The efficient use of yttria in the form of nanoparticles (NPs) is related to the understanding of the nucleation and early growth stage kinetics of yttria precursors, formed by the precipitation from the saturated solutions. In contrast to various analytical methods, where the kinetic data are deduced from large sampled volumes, in-situ transmission electron microscopy (TEM) combined with the specialized liquid cell offers the unique possibility to study the spatial and temporal evolution of NPs one-by-one, facilitating a complete reconstruction of early stage events that are vital for the formation of final products [3].

In-situ TEM experiments were performed by utilizing Jeol JEM 2100 LaB6 TEM operating at 200 kV and liquid cell TEM holder, Protochips Poseidon 300 with a heating capabilities up to 100 °C. The temperature controlled urea precipitation method was used for the synthesis of yttria precursors [4]. Namely, decomposition of urea at elevated temperatures releases precipitating agents (OH- and CO32-) homogeneously into the reaction system, avoiding localized distribution of the reactants, allowing precise control over the nucleation and growth of yttrium precursor, typically Y(OH)(CO3). The prepared solution was placed in a liquid sample enclosure contained in the liquid cell TEM holder. Water layer thickness during the observation was between 150 and 300 nm.

The initial solution was observed at a dose rate of 5000 e-/nm2/s, at room temperature (RT) for 30 minutes. Precipitation was not observed during that period, suggesting that additional chemical species that were created during the radiolysis of water by the incident electron beam did not have significant influence on the nucleation process at RT [5]. The formation rate of NPs increased drastically when the temperatures in the cell were raised above 90 °C. The resulting products were either faceted particles or dendritic nanostructures. While the faceted nanoparticles did not experience significant morphological changes during the observation, this was not true for dendritic nanostructures (Fig. 1). Dendrites first experience rapid growth by developing highly branched, hierarchical structure up to their final size of 50 nm in the first 45 s of the observation. In the second stage, in the period of about 45 s, dendrites undergo rapid fragmentation, resulting in the formation of several spherically shaped particles within the original dendrite volume that were dynamically changing either by the coalescence or Ostwald ripening. Finally, the spherical particles experience a complete dissolution within the observed area, accompanied by the appearance of faceted 150 nm sized NPs in the vicinity of the observation area.

We hypothesize that dendritic structure initially grew by the diffusion limited conditions to the stage when the depletion zone that developed around NPs hindered further growth, followed by coarsening as a result of surface area reduction. The dissolution and formation of NPs with faceted morphology is explained as a combined effect of water and urea decomposition at high temperatures, resulting in increase of [OH-] concentration, destabilizing initially formed particles and promoting a formation of more stable, plausibly Y(OH)3 hexagonal particles [6], as shown in Fig. 2.

 

References:

1 Feldmann, C., et al. (2003). Adv Funct Mater, 13 (7), 511-516.

2 Höppe, H. A. (2009). Angew Chem, Int. Ed., 48, 3572–3582.

3 Ross, F. M. (2015). Science, 350, 350 (6267), aaa9886-9.

4 Qin, H., et al. (2015). Ceramic International, 41, 11598-11604.

5 Schneider, N. M., et al. (2014). J Phys Chem, 118(38), 22373-22382.

6 Huang, S., et al. (2012). Mater. Chem., 22, 16136-16144.


Saso STURM (Ljubljana, Slovenia), Bojan AMBROZIC, Marjan BELE, Nina KOSTEVSEK, Kristina ZUZEK ROZMAN
15:00 - 15:15 #6492 - IM02-OP069 TEM compression of nano-particles in environmental mode and with atomic resolution observations.
TEM compression of nano-particles in environmental mode and with atomic resolution observations.

Characterization of nanomaterials or materials at the nanoscale has drastically increased during the last decades. This increase can be explained by (i) the necessity to obtain materials with nanometer-size grains, for instance nanocomposites, and by (ii) the use of nanoparticles in different fields, for instance lubrication applications. A challenge lies in the in situ microstructural characterization of such materials as it can give access to valuable pieces of information regarding the microstructural changes induced by their use.

 

The availability of dedicated TEM (Transmission Electron Microscopy) holders equipped with force and displacement sensors is of a very high interest to test, in situ, the size-dependent mechanical properties of nanometer-sized objects [1,2]. On crystalline nano-objects, Molecular Dynamics simulations have shown that dislocations nucleate at the surface [3,4]. Therefore, the surface state is of utmost importance in determining the nucleation stresses and types of dislocations. For materials which undergo surface reconstruction or changes in the surface chemistry under vacuum, it is necessary to perform experiments in a controlled environment (i.e. under gas pressure) which reproduces the real one.

 

Recently a Hysitron PI 95 Picoindenter has been installed on a Cs-corrected FEI TITAN ETEM (Environmental TEM) microscope. It opens the possibility of performing in situ compression under gas pressure, with high resolution imaging. We will present in situ tests of cubic CeO2, a multifunctional oxide widely used in catalysis. Nanocubes are compressed along either under vacuum or under air pressure. Introducing oxygen inside the chamber limits or avoids the reduction of CeO2 nanocubes induced more or less rapidly by the electron beam. A comparison of slopes of load-displacement curves obtained under vacuum at different electron doses and under air pressure (see Figure 1) strongly suggests that ceria reduced as Ce2O3 under the effect of an intense electron flux has a smaller Young modulus than unreduced or 'oxidized' ceria. Atomic resolution observations performed during the compression tests reveal the formation of dislocations and stacking faults (see Figure 2). Simulations are planned to further understand the deformation mechanisms as a function of the oxidation state (native, unreduced or oxidized states), as well as their reversibility [5].

 

References

[1] Q. Yu, M. Legros, A.M. Minor, MRS Bulletin 40, 62-70 (2015).

[2] E. Calvié, L. Joly-Pottuz, C. Esnouf, P. Clément, V. Garnier, J. Chevalier, Y. Jorand, A. Malchère, T. Epicier, K. Masenelli-Varlot, J. Eur. Ceram. Soc. 32 2067-2071 (2012).

[3] S. Lee, J. Im, Y. Yoo, E. Bitzek, D. Kiener, G. Richter, B. Kim, S.H. Oh, Nature Communications 5:3033 (2014).

[4] I. Issa, J. Amodéo, J. Réthoré, L. Joly-Pottuz, C. Esnouf, J. Morthomas, M. Perez, J. Chevalier, K. Masenelli-Varlot, Acta Materialia 86, 295-304 (2015).

[5] This work is performed within the framework of the LABEX iMUST (ANR-10-LABX-0064) of Université de Lyon, within the program “Investissements d’Avenir” (ANR-11-IDEX-0007) operated by the French National Research Agency (ANR). The authors thank the CLYM (Consortium Lyon-Saint Etienne de Microscopie, www.clym.fr) for the access to the microscope and A.K.P. Mann, Z. Wu and S.H. Overbury (ORNL, USA) for having provided the samples.


Thierry EPICIER, Lucile JOLY-POTTUZ (MATEIS / INSA, Lyon), Istvan JENEI, Douglas STAUFFER, Fabrice DASSENOY, Karine MASENELLI-VARLOT
15:15 - 15:30 #6125 - IM02-OP063 Microsecond time- and subnanometer spatial-scale in situ observations of crystallization process in amorphous antimony nanoparticles by the UHVEM newly developed at Osaka University.
Microsecond time- and subnanometer spatial-scale in situ observations of crystallization process in amorphous antimony nanoparticles by the UHVEM newly developed at Osaka University.

Fast in situ observation by TEM is one of useful techniques in researches on phase transitions of nanoparticles. In our previous study, it was evident that amorphous antimony nanoparticles can be crystallized with ease by stimulation from the outside. For example, when lead atoms are vapour-deposited onto amorphous antimony nanoparticles kept at room temperature, crystallization of the amorphous antimony nanoparticles is abruptly induced by an interfacial strain between an antimony nanoparticle and crystalline lead nanoparticles attached. On the other hand, knock-on displacements by high energy electron irradiation also become one of the stimulations for the crystallization of the amorphous nanoparticles. In the present study, electron-irradiation-induced crystallization processes of amorphous antimony nanoparticles have been studied by microsecond time- and subnanometer spatial-scale in situ observations by ultra-high voltage electron microscope developed with JEOL Ltd. at Osaka University recently.

Amorphous antimony nanoparticles supported on thin amorphous carbon substrates were prepared by a vapour-deposition method. Electron irradiation experiments and the simultaneous in situ observations were carried out by JEM-1000EES UHVEM operating at an accelerating voltage of 1 MV and the electron flux of the order of approximately 1024 e m-2 s-1, which was equipped with Gatan K2-IS electron direct detection CMOS camera. The time for one frame was 625 μs.

The figure 1 shows a typical example of migration of interface between an amorphous and crystalline phase during crystallization in an approximately 60 nm-sized nanoparticle as indicated by arrows. As indicated in fig. 1(a), the nucleation site of the crystalline phase is located on the particle surface. At the early stage of the crystallization, the interface has a small curvature as shown in (b) ~ (f), but at the steady state of (g) ~ (j), the interface becomes flat. The velocity of the interface migration is estimated to be approximately 10 μm s-1.

Atomic scale observations by HREM were carried out. The figure 2 shows the snapshots during crystal growth in about 20 nm sized nanoparticle. In fig, 2(a), 2 nm-sized crystalline nucleus appears on the surface of the particle, and the FFT pattern from the particle is in set. Week four spots are recognized as indicated by four arrows in the FFT pattern, and correspond to nucleation of the small crystal. In fig. 2(b), the nucleus grows up to approximately 5 nm in diameter, after that the amorphous nanoparticle is crystallized in the whole nanoparticle. In the FFT pattern, the week four spots change to an obvious net pattern, which is indexed as the [2-21] zone axis pattern of an antimony crystal. In this case of the 20 nm-sized nanoparticle, the velocity of interface migration is estimated to be approximately 20 μm s-1. The velocity of the interface migration depends on the particle size, and it was confirmed that the smaller the particle size is, the faster the velocity is. From the observation, the critical particle size for crystallization all over the nanoparticle is estimated to be approximately 5 nm. A strain on the interface between this crystalline nucleus and the amorphous nanoparticle may induce the crystallization all over the nanoparticle. A schematic illustration of crystallization mechanism in amorphous antimony nanoparticles is shown in the bottom of figure 2. The amorphous nanoparticle has to jump beyond the activation energy for the crystallization. At the early stage of the crystallization, small nucleus fluctuates between an appearance and a disappearance. However, when the size of the nucleus is larger than the critical size for crystallization, the strain energy of interface between this crystalline nucleus and the amorphous nanoparticle will be larger than the activation energy. It is suggested that the strain energy is a trigger for crystallization in amorphous antimony nanoparticles.


Hidehiro YASUDA (Osaka, Japan)
15:30 - 15:45 #6831 - IM02-OP076 Studying the Formation Dynamics of VLS Silicon Nanowire Devices using in situ TEM.
Studying the Formation Dynamics of VLS Silicon Nanowire Devices using in situ TEM.

Control of the electrical properties of Si nanowires, and in particular their connection to the macroscale environment, is important when developing nanowire applications. We therefore use in situ TEM to create suspended Si nanowire devices so that we can correlate the structure and transport properties of the nanowires and their contacts. In an ultra high vacuum TEM, we grow Si nanowires by the vapor-liquid-solid process using AuSi eutectic droplet catalysts and disilane gas. The nanowires grow from one microfabricated heater [1,2] across to a second heater 2-3 micrometers away (Figure 1). Temperature can be controlled in the VLS growth range 450-600oC, and we can control the voltage across the nanowire at the moment of contact, and perform IV measurements on the final nanowire device [3] at room temperature. We have shown that novel nanowire contact geometries such as necked or bulged contacts can be formed [4] by tuning the balance between the Si growth rate and the migration of Au from the contact region. This is achieved by controlling the growth conditions during contact formation.

Here we examine an additional parameter that is even more effective in controlling the contact geometry. This is electromigration, induced by flowing current through the nanowire during contact formation. In Figure 2 we show the effect of current flow (as well as disilane pressure) on the deposition of Si and the volume of AuSi. In Fig 2(a) a TEM image series shows the formation of a 10nm nano-gap by a nanowire (Si NW) connecting to a Si cantilever side wall with an AuSi droplet, and removing the AuSi by using electromigration. In Fig 2 (b, c), the AuSi and deposited Si volumes is plotted along with (b) disilane pressure and (c) current through the wire. In (b) Si is incorporated only at high disilane pressure; when pressure is reduced, the morphology becomes constant. In (c), once a current is flowed through the nanowire, the AuSi starts to shrink at 5400nm3/s due to Au electromigration; as Au moves away, the Si is deposited at 1400nm3/s. The net decrease in volume creates the 10nm gap. Hence the current flow can cause rapid loss of Au from the contact site, forcing a rapid segregation of Si from the AuSi droplet. This we show can controls the contact formation dynamics to create bulged, straight, necked or nanogap contacts [4].

Once contact has been established, the nanowire device can be electrically characterized and further modified, for example by oxidation of the Si surface. We find that nanowires can sustain tens of volts before disconnecting, and exhibit fairly consistent IV characteristics at room temperature, Figure 2(d).

The ability to control the contact structure, and measure its transport properties directly after formation, is helpful in understanding the behaviour of nanowires in processed devices. Electromigration appears to be a useful parameter that allows novel nanowire contact geometries to be created and hence greater flexibility in nanowire device design.

[1] C. Kallesøe et al., Small, vol. 6, 2010, pp. 2058–2064.

[2] K. Molhave et al., Small, vol. 4, Oct. 2008, pp. 1741–1746.

[3] C. Kallesøe et al., Nano Letters, vol. 12, Jun. 2012, pp. 2965–2970.

[4] S.B. Alam et al., Nano Letters, vol. 15, Oct. 2015, pp. 6535–6541.


Sardar B. ALAM, Federico PANCIERA, Ole HANSEN, Frances M ROSS, Kristian MØLHAVE (Lyngby, Denmark)
15:45 - 16:00 #5916 - IM02-OP060 Quantitative measurement of doping and surface charge in a ZnO nanowire using in-situ biasing and off-axis electron holography.
Quantitative measurement of doping and surface charge in a ZnO nanowire using in-situ biasing and off-axis electron holography.

Semiconducting nanowires (NWs) are widely studied because the properties that stem from their three-dimensional, nanoscale nature open new opportunities for device design. In particular ZnO NWs are widely studied for their interesting piezoelectronic properties. Though NWs can be readily grown today with increased carrier concentration due to doping, the measurement of the doping concentration at the nm scale remains challenging.

    We demonstrate that state-of-the-art off-axis electron holography in combination with electrical in-situ biasing can be used to detect active dopants and surface charges quantitatively in ZnO nanowires. The outline of the contacted NW is described in Fig. 1. We have acquired series of holograms and averaged the phase to increase signal to noise but avoid blurring due to specimen drift. The 0V bias images were used to remove contrast not related to the varying electrostatic potential and to verify the nanowire was not electrically modified during the experiment. We analyzed the depletion width in the nanowire due to an applied reverse bias to a Schottky contact on the nanowire, using a fit to the data.

    Comparison of the experimental data with 3D simulations that were similarly treated indicates an n-type doping level of 1x1018 at. cm-3 and a negative surface charge around -2.5x1012 charges cm-2. Fig. 2a shows the experimental vacuum corrected phase profiles converted to potential, and a fit to the data. The extracted depletion width is indicated with a cross. The inset shows the location of the phase profile in the NW core and two symmetrically defined phase profiles obtained in vacuum on either side of the NW. The average signal in vacuum was subtracted from the NW signal and the remaining phase signal was converted to potential using a thickness of 75 nm, much smaller than the 150 nm NW diameter. In Fig. 2b the experimental and simulated depletion length is compared for 3D simulations including varying doping and surface charge quantities. We expect that the real doping is between 1 and 2x1018 at. cm-3 by comparison of experiment and simulation. The surface charge results in a surface depletion to a depth of 36 nm. We found an active/undepleted core thickness of 70-75 nm, providing excellent agreement between the simulated thickness of the undepleted core and the active thickness observed in the experimental data.

    Off-axis electron holography thus offers unique capabilities for quantitative analysis of active dopant concentrations and surface charges in nanostructures with nanometer-scale spatial resolution.


Martien DEN HERTOG (Institut Neel CNRS, Grenoble), Fabrice DONATINI, Robert MCLEOD, Eva MONROY, Julien PERNOT
Amphithéâtre

"Monday 29 August"

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MS3-I
14:00 - 16:00

MS3: Semiconductors and devices
SLOT I

Chairpersons: Catherine BOUGEROL (Chairperson, Grenoble, France), Vincenzo GRILLO (Chairperson, Modena, Italy)
14:00 - 14:30 #8413 - MS03-S72 Cathodoluminescence and EBIC study of widegap semiconductors and devices.
Cathodoluminescence and EBIC study of widegap semiconductors and devices.

Cathodoluminescence (CL) and electron-beam-induced current (EBIC) are versatile techniques to characterize semiconductor materials and devices. In this talk, we review our achievement on the study of widegap semiconductors, GaN and SiC.

The major defects in GaN are dislocations. GaN wafers on sapphire include dislocations of 109 to 107 cm-2 due to lattice mismatch. Fig. 1 shows the secondary electron (SE) and CL images of GaN wafer with different thickness. Such dislocations may agglomerate and form the hexagonal pits of micrometer size. These defects are detrimental for the device performance. Homoepitaxial GaN wafer take over the dislocations of 106 cm-2 from the seeds. We have performed CL study to distinguish dislocation characters and to clarify the effect of dislocations.

The major defects in SiC are threading screw dislocations (TSD) and stacking faults (SF). TSD act as the killer defects due to the surface roughness at the dislocation core region. SF may be generated and expanded due to e-beam irradiation. EBIC is very effective to characterize these defects in SiC. The e-beam enhanced defect generation of SF (Fig.2) will be reviewed.

At the end, we demonstrate 3D spectra imaging of CL, which is very promising to analyze the details of extended defects.

This work was supported from “GaN project”, Study of Future Semiconductors for Sustainable Society in MEXT, Japan.


Takashi SEKIGUCHI (, Japan)
Invited
14:30 - 14:45 #6432 - MS03-OP245 A novel way of measuring lifetime at the nanometer scale using specific fast electron-matter interactions.
A novel way of measuring lifetime at the nanometer scale using specific fast electron-matter interactions.

Charge carrier lifetime is a key parameter for understanding the physics of electronic or optical excitations. For example the excited state can unveil details of environmental influence, specifically the role of non-radiative transitions. From a practical point of view, lifetimes can largely determine the performances of devices, such as Light Emitting Devices (LEDs) or photovoltaic cells. These usually rely on nanometer scale structures for which small details, such as the presence of single point defects, have to be known with atomic precision. Despite the success of super resolution optical microscopies, they fail as general tools for lifetime measurement at the nanometer scale. In this presentation we will show how we can take advantage of the nanometer probe size formed in a Transmission Electron Microscope and a phenomenon that we recently discovered (referred hereafter as the bunching effect [1]), to study lifetimes of emitter at the nanometer scale without using a pulsed electron gun.

The effect takes its name from the fact that the autocorrelation function g(2)(τ) of the CL signal coming from quantum emitters (points defects or more generally single photon emitters –SPE-, quantum confined structures…) may exhibit a peak at zero delay – which is a fundamental difference with PL. To measure this effect, we use an intensity interferometry experiment that measures the CL g(2)(τ). Figure 1 shows that, at low incoming electron currents (I < 100 pA), the g(2)(τ) of the CL signal intensity I(t) displays a large nanosecond-range peak at zero delay (g(2)(0) > 35) (bunching), the amplitude of which depends on the incoming electron current. This behavior strongly departs from the PL g(2)(τ) function which is flat when multiple independent SPE are excited. In this presentation we will show that it occurs because an emitter, like a quantum well, will be excited multiple times by a single electron and will emit a bunch of photons on a time window close to its radiative lifetime. As it will be proved, by simply fitting the experimental curve of the g(2)(τ) function by an exponential we can retrieve the lifetime of the emitter.

Using this effect we were therefore able to measure very efficiently lifetimes of Gallium Nitride quantum wells (QWs) separated by less than 15 nm, together with their emission energy and atomic structure (Figure 2). Experiments on well separated individual quantum structures shows an excellent agreement with combined time-resolved μ-photoluminescence. We also demonstrate the possibility to measure the lifetimes of emitters of different kinds (defects, QWs, bulk) within a distance of a tenth of nanometers even for spectrally overlapping emissions. This technique is readily applicable to large ensembles of single photon sources and various emitters such as QWs, quantum dots, point defects and extended defects, such as stacking faults (SF).

 

[1] Meuret et al, PRL 114 197401 (2015)

[2] L. H. G. Tizei and M. Kociak, PRL 110  153604 (2013)


Sophie MEURET (CEMES, Toulouse), Luiz TIZEI, Thomas AUZELLE, Thibault CAZIMAJOU, Romain BOURRELLIER, Rudee SONGMUANG, Huan-Cheng CHANG, François TREUSSART, Bruno DAUDIN, Bruno GAYRAL, Mathieu KOCIAK
14:45 - 15:00 #6170 - MS03-OP242 Nanocathodoluminescence reveals the mitigation of the Stark shift in InGaN quantum wells by silicon doping.
Nanocathodoluminescence reveals the mitigation of the Stark shift in InGaN quantum wells by silicon doping.

InGaN quantum wells (QWs) show high internal quantum efficiencies over the ultraviolet to green spectrum and in white light emitting diodes (LEDs). However a persistent challenge to the development of higher efficiency devices is the strong polarisation field across the across the QWs along the polar axis. The polarisation induced internal electric fields cause the spatial separation of the electron and hole wavefunctions in the QWs, known as the quantum confined Stark effect (QCSE). It has been proposed that the internal electric field can be suppressed by silicon doping the quantum barriers (QBs) [1]. Moreover, Kim et al. have theoretically shown that the device efficiency may be improved by variations in the silicon dopant concentration through the QWs [2]. To confirm the simulated properties though, it is crucial to resolve the spectral properties of individual QWs.

In this study, nano-cathodoluminescence (nanoCL) reveals for the first time the spectral properties of individual InGaN QWs in high efficiency LEDs and the influence of silicon doping on the emission properties [3]. A silicon doped layer at 5×1018 cm-3 is included immediately prior to the growth of the 1st QW and the QBs between the QWs are subsequently doped to 1×1018 cm-3 (sample A). Two further multiple QW InGaN/GaN structures were also grown for reference with QB doping levels of 1×1018 cm-3 (sample B) and 1×1017 cm-3 or less (sample C). NanoCL reveals variations in the emission wavelength that directly correlate with individual QWs. With QB doping greater than 1×1018 cm-3, there is a continuous blue shift in the emission wavelength of each of the subsequently grown QWs. The inclusion of a higher doped layer immediately prior to the growth of the 1st QW in the LED structure leads to a blue shift unique to the 1st QW.

The experimental variations in the emission wavelengths were reproduced by Schrödinger-Poisson simulations. The blue shift in emission wavelength through the QWs due to QB doping is found to be caused by screening of the internal electric fields. The reduction in the emission wavelength of the first grown QW due to the higher doped layer is also found to be the result of screening of the internal electric field. The mitigation of the QCSE and consequently stronger overlap of the electron and hole wavefunction, thus should result in an increase in the radiative recombination. NanoCL thus may serve as an experimental approach to study and refine  the design of future optoelectronic nanostructures, including the effects from doping and lead to improvements in device efficiency and functionality.

[1] T. Deguchi, et al., Appl. Phys. Letts. 72, 3329 (1998)

[2] D. Y. Kim, et al., IEEE Photonics. 7, 1 (2015)

[3] J. T. Griffiths, et al., Nano Letts. 15, 7639 (2015)


James GRIFFITHS (Cambridge, United Kingdom), Siyuan ZHANG, Bertrand ROUET-LEDUC, Wai Yuen FU, Dandan ZHU, David WALLIS, Ashley HOWKINS, Ian BOYD, David STOWE, Colin HUMPHREYS, Rachel OLIVER
15:00 - 15:15 #5923 - MS03-OP240 Advanced characterization of colloidal semiconductor nanocrystals by 2D and 3D electron microscopy.
Advanced characterization of colloidal semiconductor nanocrystals by 2D and 3D electron microscopy.

Due to the specific size-dependent photoluminescence spectra of semiconductor nanocrystals (NCs), their use is promising as building blocks for new electronic and optical nanodevices such as light-emitting diodes, solar cells, lasers and biological sensors.1,2 In order to design these NCs with tailored properties for specific applications, a high level of control over their synthesis is of key importance. Therefore, it is of great importance to characterize both the shape as the composition of these systems. Here, a range of different colloidal semiconductor NCs are characterized using 2D and 3D electron microscopy techniques.

We will discuss, 2D semiconductor CdSe nanoplatelets (NPLs), both flat as helical shaped3, which are investigated using electron microscopy techniques. The aim is to retrieve structural information using high resolution imaging which enables us to study the growth mechanism of these NPLs. The flat NPLs have mainly {100} edges (Figure 1.A) and only a thickness of 4 to 5 atomic layers (Figure 1.B). The analysis of the helical NPLs shows that they are zinc blende and that the helices are folded uniquely around the ⟨110⟩ axis (Figure 1.D). In order to retrieve the helicity of the ultrathin helical shaped platelets, electron tomography is applied. The three-dimensional tomographic reconstructions confirm that the observed helices fully rotate over a diameter of ∼25 nm and that they are not preferentially left- or right-handed (Figure 1.C).

Furthermore, heteronanocrystals (HNCs) are studied as they improve the stability and, thereby, the surface passivation of the NCs when overgrown with a shell of a second semiconductor with a higher bandgap.  In this manner, the robustness of the system and the photoluminescence quantum yield of the core is increased.4  In order to understand the growth process of HNCs, both the 3D structure as the position of the core inside that structure is of key importance. We investigate two types of CdSe/CdS core/shell HNCs, with either a nanorod or bullet shape. High resolution HAADF-STEM microscopy enables us to investigate the crystal structure of the core-shell nanostructure (Figure 2.A,C). Advanced electron tomography based on novel reconstruction algorithms5 is used to investigate the 3D shape and to reveal the position of the CdSe core in the CdS shell (Figure 2.B,D). For the CdSe/CdS core/shell bullets, the presence of two types of morphologies was revealed (Figure 2.D). High resolution STEM imaging was used to characterize the surface facets of both morphologies, which enabled us to compare the surface energy of both morphologies. For the CdSe/CdS nanorods, a sequential topotactic cation exchange pathway that yields CuInSe2/CuInS2 nanorods with near-infrared luminescence is further investigated6.

[1]  Somers, R. C.; Bawendi, M. G.; Nocera, D. G. Chem. Soc. Rev. 2007, 36, 579–591.

[2]  Talapin, D. V.; Lee, J.-S.; Kovalenko, M. V.; Shevchenko, E. V. Chem. Rev. 2010, 110, 389–458.

[3]  Hutter, E. M.; Bladt, E.; Goris, B.; Pietra, F.; van der Bok, J. C.; Boneschanscher, M. P.; de Mello Donegá, C.; Bals, S.; Vanmaekelbergh, D. Nano Lett. 2014, 14, 6257–6262.

[4]  Dabbousi, B. O.; Rodriguez-Viejo, J.; Mikulec, F. V; Heine, J. R.; Mattoussi, H.; Ober, R.; Jensen, K. F.; Bawendi, M. G. J. Phys. Chem. B 1997, 101, 9463–9475.

[5]  Goris, B.; Van den Broek, W.; Batenburg, K. J.; Heidari Mezerji, H.; Bals, S. Ultramicroscopy 2012, 113, 120–130.

[6]  van der Stam, W.; Bladt, E.; Rabouw, F. T.; Bals, S.; de Mello Donega, C. ACS Nano 2015, 9, 11430–11438.

The authors acknowledge financial support from the Research Foundation - Flanders (FWO).


Eva BLADT (Antwerpen, Belgium), Bart GORIS, Eline HUTTER, Ward VAN DER STAM, Relinde MOES, Celso DE MELLO DONEGA, Daniël VANMAEKELBERGH, Sara BALS
15:15 - 15:30 #6244 - MS03-OP243 Picometre-precision atomic structure of inversion domain boundaries in GaN.
Picometre-precision atomic structure of inversion domain boundaries in GaN.

Here, we report on the precise analysis of the atomic structure of inversion domain boundaries (IDBs) in GaN by scanning transmission electron microscopy.  IDBs are a common defect in GaN that traps carriers and leads to a slightly modified luminescence wavelength [1,2].

Our analysis of IDBs in MOCVD grown nanowires confirms recent coherent Bragg imaging (CBI) results [3] stating that the atomic structure of this IDB is different or slightly different from the one determined in 1996 by first-principle calculations (IDB*) [4].  CBI experiments measured a 8 pm shift of the c-planes of the two domains [3], whereas  first-principle calculations predicted no shift. A previous study by STEM [5] found a shift of "ca. 0.6 Å" (60pm), corresponding roughly to the switch of the Ga and N positions without any additional shift. Here in addition to a shift along  c, we show that the interface configuration corresponds qualitatively to the IDB* model (cf. Fig. 1) and that there is a 10 pm dilatation perpendicular to the interface (shown in Fig. 3) in agreement with this model, while CBI did not find a dilatation.

To facilitate the measurement of atom positions across the IDB with picometre-precision, we use HAADF-STEM to avoid coherent effects leading to artefacts. Scanning and drift artefacts are being suppressed by acquiring series of rapid STEM images and aligning them using the newly developed Zorro code. This algorithm is based on calculating estimated drift positions by correlating every frame to multiple frames and minimizing the error of the overdetermined system to obtain a best estimate for the frame positions relative to each other. The sub-pixel aligned frames are then averaged and the peak positions are determined via TeMA (template-matching algorithm).

Our quantitative analysis of experimental and simulated STEM images shows that when atomic columns are very close to each other the measured distance can be slightly different from the real value.  For instance, when the distance between atomic columns becomes smaller than 0.1 nm, the difference between the measured and real values can account for several picometres. This effect can be well observed when an IDB kinks perpendicular to the observation direction leading to closely projected columns in the overlap region of the two domains as seen in Fig. 2. Electron scattering simulations show that the apparently wider distance between atoms is a channeling effect.

These results have provided elements to revisit previous theoretical models of IDBs in GaN.

  

[1] T. Auzelle et al., Appl. Phys. Lett. 107, 051904 (2015).

[2] R. Kirste et al., J. Appl. Phys., 110, 093503(2011).

[3] S. Labat et al., ACS Nano 9, 9210 (2015).

[4] J. E. Northrup et al., Phys. Rev. Lett. 77, 103 (1996).

[5] F. Liu et al., Adv. Mater. 20, 2162 (2008).


Benedikt HAAS (GRENOBLE CEDEX 9), Robert A. MCLEOD, Thomas AUZELLE, Bruno DAUDIN, Joël EYMERY, Frédéric LANÇON, Jian-Min ZUO, Jean-Luc ROUVIÈRE
15:30 - 15:45 #5980 - MS03-OP241 Si:B doping measurement by dark-field electron holography.
Si:B doping measurement by dark-field electron holography.

In modern MOS devices, sources and drains are of nanometric dimensions and highly doped (dopant concentration typically > 1020 at.cm-3). Measuring such dopant concentrations and visualizing their spatial extensions in silicon, although mandatory for the development of the technology, is elusive in practice. Several TEM techniques such as EELS and EDX seem suitable to map dopant concentrations with the required resolution but while they are accurate to measure impurities concentrations, they cannot assess whether these impurities are on interstitial or substitutional sites, what is essential to define doping levels. Moreover, the detection of boron suffers from other physical limitations. Finally, bright-field electron holography has been reported to be suited for such measurements but transforming the electrostatic fields which are measured into doping concentrations is far from straightforward.

In this work, we have explored the possibility to extract boron concentrations from the measurement of changes of the silicon lattice parameter induced by the substitution of boron atoms. For this we use dark-field electron holography (DFEH) on specifically designed samples.

In a first part, we will present the DFEH principle [1]. This is an interferometry technique able to map strain with a precision of the order of 10-4 and a few nanometers spatial resolution over micrometer fields of view. Two diffracted beams, one passing through an unstrained region of the lattice and acting as a reference, the other one passing through the region where strain has to be measured, are forced to interfere by using an electrostatic biprism and thus create an interference pattern (see figure 1). A phase map is extracted from the pattern by Fourier transform and converted into an atomic displacement field. By using two non-collinear diffraction vectors, all the components of the strain tensor in the observation plane can be obtained.

For our experiment, a sample consisting of five 50 nm-thick doped layers of increasing boron concentrations ranging from 3E18 at.cm-3 to 8.5E19 at.cm-3 was grown by RP-CVD, under conditions insuring both extremely low concentrations of impurities and the full activation of boron [2]. The sample was further checked by SIMS and ECVP measurements, demonstrating that 100 % of boron atoms are on substitutional sites in all the doped layers. DFEH was used to measure the deformation of the doped layers. We could thus deduce the silicon lattice expansion coefficient (β) resulting from the adding of boron atoms in the crystalline silicon network, from these measurements, as explained below.

The boron atoms being on substitutional sites, the Si:B doped layers can be seen as solid solutions as confirmed by the homogeneity of the deformations imaged by DFEH. These layers are pseudomorphic on the pure silicon lattice as confirmed by the mapping of the in-plane strain by DFEH. Thus, the change of the lattice parameter resulting from the incorporation of boron atoms is solely supported by the out-of-plane strain, through the Poisson’s reaction of the material (figure 2). From the modeling of this sample by FEM and taking into account the relaxation affecting the thin lamella used for DFEH, we are able to retrieve the values of the relaxed Si:B lattice parameter as a function of the substitutional boron concentration. As expected for a solid solution, we find a linear relation between these two parameters. Knowing the boron concentration and the Si:B lattice parameter profiles, we are able to deduce that β coefficient equals -6.5E-24 cm3 (figure 3). Figure 4 compares the results we have obtained with those found in the literature, often measured by XRD.

Finally, β, the coefficient relating the boron concentration to the lattice parameter, allows us to transform a strain map obtained by DFEH into a “substitutional boron concentration” map with a precision of 3E19 at.cm-3 and a spatial resolution of 5 nm. We will illustrate the DFEH effectiveness to measure and image dopant concentrations in “real samples” through few examples, and will discuss the complementarity of the information obtained by this method and by bright-field electron holography.

[1] M.J. Hÿtch, F. Houdellier, F. Hüe and E. Snoeck, Nature 453, pp. 1086-1090, 2008.

[2] F. Gonzatti, J.M. Hartmann, K. Yckache, ECS Transactions 16, pp. 485-493, 2008.


Victor BOUREAU (Toulouse), Daniel BENOIT, Jean-Michel HARTMANN, Martin HŸTCH, Alain CLAVERIE
15:45 - 16:00 #6633 - MS03-OP248 In situ tracking of the heat-induced replacement of GaAs by Au in nanowires.
In situ tracking of the heat-induced replacement of GaAs by Au in nanowires.

For devices, the junctions between the semiconductors and any metal contacts are crucial for the device performance. A heat treatment is commonly applied to improve the quality of the contacts. For GaAs nanowires with a Au-based contact, annealing can lead to a well-defined metal-GaAs junction within the nanowire [1]. Here, we report an in situ heating, high-angle annular dark-field scanning transmission electron microscopy (HAADF STEM) study on the formation and structural characteristics of such junctions. The nanowires are dispersed on a high-stability TEM heating chip, and local Au contacts are made by lithography before in situ heat treatment within the microscope (Figure 1) [2]. A replacement of GaAs by Au can take place and our study determined key aspects of the reaction mechanism and its kinetics such as the reaction rate and the activation energy. In general, the replacement proceeds one GaAs(111) bi-layer at a time, as demonstrated by lattice resolved HAADF STEM (Figure 2). Ga dissolves in Au and As desorbs, as was previously reported for planar GaAs-Au structures [3]. Using scanning precession electron diffraction (SPED) it was found that there is no fixed epitaxial relation between the newly formed 1D Au-phase and the original GaAs nanowire. The reaction rate and the activation energy for the exchange are accurately determined by tracking the interface between the two phases over relatively long (~0.5 μm) distances.

 

The morphology of the solid 1D Au-phase is the same as for the original GaAs nanowire. Within it, growth twins are observed. The morphology and growth twins do not alter upon cooling and reheating. For the case where the nanowire is attached to a relatively large Au contact (Au reservoir), the contact acts as a Ga diffusion sink, and only negligible amounts of Ga are found in the formed 1D Au-phase. The in situ STEM and electron diffraction results prove that the replacement reaction takes place in the solid state. For the case where the nanowire is attached to a limited Au supply, as would be the case for a small volume Au deposition onto the nanowire or a Au catalyst droplet used for the nanowire growth, the growing metal segment gradually becomes richer in Ga as the exchange reaction proceeds. The reaction rate is slowed down over time due to the Ga enrichment. Eventually and at sufficiently high temperatures, the Au-Ga segment becomes liquid. Upon cooling of such segments, different Au-Ga intermetallic phases form and the main phases could be identified using a combination of SPED and machine learning (Figure 3).

 

References:

[1]: M. Orrù, et al, Phys. Rev. Appl., 4, 044010, 2015. DOI: http://dx.doi.org/10.1103/PhysRevApplied.4.044010
[2]: V. T. Fauske, et al, submitted.
[3]: T. Sebestyen, Electronics Lett., 12, 96, 1976. DOI: 10.1049/el:19760075

 

The authors acknowledge: The Research Council of Norway for the support to the NorFab (197411/V30) and the NORTEM (197405) facilities, and the FRINATEK program (214235), NTNU for support of the initiative “Enabling Technologies” and the EU for support via ERC grant no. 259619 and grant no. 312483 ESTEEM2.


Vidar FAUSKE, Junghwan HUH, Giorgio DIVITINI, Mazid MUNSHI, Dasa Lakshmi DHEERAJ, Caterina DUCATI, Helge WEMAN, Bjørn-Ove FIMLAND, Antonius VAN HELVOORT (Trondheim, Norway)
Salle Bellecour 1,2,3

"Monday 29 August"

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IM5-II
14:00 - 16:00

IM5: Quantitative imaging and image processing
SLOT II

Chairpersons: Joanne ETHERIDGE (Director) (Chairperson, Melbourne, Australia), Jean-Christophe OLIVO-MARIN (Chairperson, Paris, France)
14:00 - 14:30 #8366 - IM05-S45 Exposing New Atomic-scale Information about Materials by Improving the Quality and Quantifiability of Aberration-corrected STEM Data.
Exposing New Atomic-scale Information about Materials by Improving the Quality and Quantifiability of Aberration-corrected STEM Data.

Aberration-corrected scanning transmission electron microscopy (STEM) is providing previously unattainable views of materials at the atomic scale. The quality of STEM data is now often limited by environmental and experimental factors instead of instrument factors (e.g. electron optics). Some of these environmental limitations can be overcome by collecting and processing STEM data using new data science techniques. These techniques expose new atomic-scale materials information by improving our ability to measure atomic column positions, 3D structure, single point defects, and atomic-scale composition.

The precision in locating atomic column positions in STEM images is fundamentally limited by the image signal to noise ratio (SNR), but typically practical limits including sample and microscope instabilities that produce distortions in STEM images are encountered before reaching the SNR limit. We have developed a non-rigid registration (NRR) technique that corrects image distortion of all length scales and enables averaging to enhance the SNR.[1-2] Sub-pm precision images of single crystal materials have been achieved by NRR and averaging high angle annular dark field (HAADF) STEM images. NRR has allowed measurements of pm-scale bond length variations of Pt nanocatalyst atoms that may help explain their catalytic activity. Figure 1 shows NRR and averaged HAADF STEM data of a Pt nanocatalyst on an alumina support from a side-view that exhibits ~2 pm precision. Displacement measurements of each atomic column position reveal moderate Pt surface bond length contraction and strong but localized strain of Pt atoms near nanoparticle-support interface. Some of the interface strain is transferred up the twin boundary.

Determining the three dimensional atomic structure of materials from two dimensional S/TEM images is a major hurdle. The standardless atom counting technique is one promising route to measure local sample thickness by quantitatively comparing experimental and simulated HAADF STEM images and can be used to deduce 3D structure.[3] Unlike previous examples, NRR and averaging STEM images have allowed standardless atom counting with the uncertainty no longer dominated by Poisson noise [1]. This should allow the unique determination of the number of atoms in atomic columns, although this has not yet been demonstrated due to other sample limitations.

Point defects are critical to the properties of a wide range of materials, but imaging single defects is challenging. Quantitative STEM has allowed imaging single substitutional and interstitial dopant impurity atoms[4], but experimentally imaging single vacancies has remained elusive. We have used HAADF STEM frozen phonon multislice simulations to predict the detectability of La vacancies in LaMnO3 by the reduced atomic column intensity and atomic column distortions around the vacancy. NRR and averaging HAADF STEM images of LaMnO3 improves the SNR and the image precision sufficiently to potentially detect single La vacancies. Experimental images contain candidate single La vacancies that have local atomic column distortions and intensity variations which match simulated predictions.

Atomic-resolution composition maps can be created using STEM energy dispersive x-ray spectroscopy (EDS) spectrum imaging (SI). However, long total dwell times that may introduce spatial distortions are required because of low x-ray production and collection efficiency. The most common approach to minimize distortions is to sum multiple SIs using online drift-correction software that discards the individual SIs and HAADF images. The quality of EDS SIs of a Nd2/3TiO3 sample was improved by saving the simultaneously acquired raw HAADF and EDS SI series, and applying post acquisition NRR and averaging. The resulting elemental maps show less spatial distortions and more atomic localization of x-rays. In addition, a novel non-local principle component analysis further enhances the quality of EDS SIs compared to conventional denoising methods.[5]

[1] Yankovich et al Nature Communications, 5 4155 (2014)

[2] Yankovich et al Advanced Structural and Chemical Imaging 1:2 (2015)

[3] LeBeau et al Nano Letters, 10 4405 (2010)

[4] Voyles et al Nature, 416 826 (2002)

[5] Yankovich et al Nanotechnology, submitted (2016)


Andrew YANKOVICH (Göteborg, Sweden), Torben PINGEL, Jie FENG, Alex KVIT, Thomas SLATER, Sarah HAIGH, Dane MORGAN, Paul VOYLES, Eva OLSSON
Invited
14:30 - 14:45 #6658 - IM05-OP114 Nanoparticle Structure from Genetic Algorithm Refinement Against Quantitative STEM Data.
Nanoparticle Structure from Genetic Algorithm Refinement Against Quantitative STEM Data.

We have developed a structure refinement method based on genetic algorithm optimization to create structural models of individual nanostructures based on quantitative scanning transmission electron microscopy (STEM) data [1].  We defined a cost function C for a structural model s, as C(s) = E(s) + αχ2[I(s), Iexp], where E is the simulated potential energy of s, χ2 is goodness-of-fit between the experimental STEM data Iexp and the simulated STEM data I(s), and α is a weighting parameter.  A genetic algorithm (GA) is used to minimize C over structures s, resulting in a structure that is both at a local minimum in the (simulated) energy and in good agreement with experimental data.  The advantage of combining the energy and goodness-of-fit to experiments over optimization on just one or the other is the ability to refine structures that are not at a global energy minimum (like most nanoparticles) from experimental data that does not completely constrain the three-dimensional structure (like a STEM image in one orientation).

We have validated the approach and implementation using simulated experimental data from a metastable, 309-atom Au inodecahedron, as shown in Figure 1.  Figure 1(a) is the test structure, and Figure 1(b) is the simulated STEM image from that structure.  The energy is calculated using an embedded atom method empirical potential for Au.  Figure 1(d) shows the evolution of the two terms in the cost function and the total cost function over the course of the optimization.  Neither term decreases monotonically for the entire optimization, but the entire C(s) does.  Figure 1(c) shows the STEM image of the refined structure after 2200 generations, which is an essentially perfect match for the input image in (b).  Figure 1(e) shows that the 3D structures are also a perfect match, with a maximum difference in atomic positions of 0.02 Å.

As a first test, we have refined the structure of a ~6000 atom colloidal Au nanoparticle, as shown in Figure 2.  Figure 2(a) is the experimental STEM image of the particle [2].  Figure 2(c) shows the evolution of the cost function as it converges over 4000 generations to reach the final structure in Figure 2(b).  In this case, the optimization was allowed to change the number of atoms in the structure as well as their position.  The result faithful reproduces the image of the sample, including the outline and the twin boundary.  Figure 2(d) shows the displacement of matching atomic columns in the two images.  The large displacements near 0.3 Å arise from surface atoms which are not well-imaged in the experiment due to surface atom mobility under the electron beam, but which are recovered in the refined model.  Additional applications to Pt and Pt-Mo catalysts will be discussed.

1. “Integrated Computational and Experimental Structure Determination for Nanoparticles” Min Yu, Andrew B. Yankovich, Amy Kaczmarowski, Dane Morgan, Paul M. Voyles (submitted)

2. “High-precision scanning transmission electron microscopy at coarse pixel sampling” Andrew B. Yankovich, Benjamin Berkels, W. Dahmen, P. Binev, and Paul M. Voyles Advanced Chemical and Structural Imaging 1, 2 (2015).  DOI: 10.1186/s40679-015-0003-9


Paul VOYLES (Madison, USA), Zhewen SONG, Dan ZHOU, Zhongnan XU, Andrew YANKOVICH, Dane MORGAN
14:45 - 15:00 #6196 - IM05-OP108 Non-destructive nanoparticle characterisation using a minimum electron dose in quantitative ADF STEM: how low can one go?
Non-destructive nanoparticle characterisation using a minimum electron dose in quantitative ADF STEM: how low can one go?

Aberration-corrected STEM has become a powerful technique for materials characterisation of complex nanostructures. Recent progress in the development of quantitative methods allows us to extract reliable structural and chemical information from experimental images in 2D as well as in 3D. In quantitative STEM, images are treated as datasets from which structure parameters are determined by comparison with image simulations or by using parameter estimation-based methods [1]. So-called scattering cross-sections, measuring the total scattered intensity for each atomic column, are useful values for quantification [2, 3]. Their high sensitivity and robustness for imaging parameters in combination with a statistical analysis enables us to count atoms with single-atom sensitivity [4].  An example is shown in Figure 1, where atom-counting from a single image combined with an energy minimisation approach [5] is used to reconstruct the 3D atomic structure of a Au nanorod. The close match with the 3D tomography reconstruction resulting from images recorded along 3 viewing directions [6] demonstrates the accuracy of the method.

    

Reducing the number of images by avoiding tilt tomography will be of great help when studying beam-sensitive nanostructures. However, the tolerable electron dose is often still orders of magnitude lower than what is typically used for atomic resolution imaging. Therefore, the question arises: how to optimise the experiment design in order to reduce the electron dose? To investigate this, we have developed a statistical framework that allows us to study the effect of electron shot noise, scan noise, and radiation damage on the atom-counting precision. Figure 2 shows that even for low-dose image acquisitions, statistical parameter estimation theory is a powerful tool to refine structure parameters of an incoherent imaging model and to measure scattering cross-sections. However, the presence of electron shot noise in this dose regime is limiting the atom-counting precision. Severe overlap in the distributions of scattering cross-sections related to columns of different thicknesses hampers one to achieve single-atom sensitivity. We will show how the precision improves with increasing electron dose until scan noise, followed by radiation damage, become the main limiting factors. This analysis allows one to balance atom-counting reliability and structural damage as a function of electron dose.

 

Finally, it will be shown how quantitative ADF STEM may greatly benefit from statistical detection theory in order to optimise the detector settings [7]. This is illustrated in Figure 3, where the number of atoms of a beam-sensitive Pt particle is determined from a STEM image acquired under the computed optimal detector settings. In addition, use is made of a novel hybrid method to count the number of Pt atoms, in which the benefits of a statistics-based and image simulations-based method are efficiently combined in one framework. In conclusion, new developments in the field of quantitative STEM will be presented enabling one to quantify atomic structures in their native state with the highest possible precision.

     

[1] S. Van Aert et al., IUCrJ 3 (2016) 71-83.

[2] S. Van Aert et al., Ultramicroscopy 109 (2009) 1236-1244.

[3] H. E et al., Ultramicroscopy 133 (2013) 109-119.

[4] S. Van Aert et al., Physical Review B 87 (2013) 064107.

[5] L. Jones et al., Nano Letters 14 (2014) 6336-6341.

[6] B. Goris et al., Nature Materials 11 (2012) 930-935.

[7] A. De Backer et al., Ultramicroscopy 151 (2015) 46-55.

  

The authors acknowledge financial support from the Research Foundation Flanders (FWO,Belgium) through project fundings (G.0374.13N, G.0369.15N and G.0368.15N) and postdoc grants to A.D.B. and B.G. S.B. and A.B. acknowledge funding from the European Research Council (Starting Grant No. COLOURATOMS 335078 and No. VORTEX 278510). The research leading to these results has also received funding from the European Union Seventh Framework Programme [FP7/2007- 2013] under Grant agreement no. 312483 (ESTEEM2).


Sandra VAN AERT (Antwerp, Belgium), Annick DE BACKER, Annelies DE WAEL, Lewys JONES, Gerardo T MARTINEZ, Bart GORIS, Thomas ALTANTZIS, Armand BÉCHÉ, Sara BALS, Peter D NELLIST
15:00 - 15:15 #5795 - IM05-OP105 Quantitative annular dark-field imaging at atomic resolution.
Quantitative annular dark-field imaging at atomic resolution.

Quantitative annular dark-filed (ADF) imaging in scanning transmission electron microscopy (STEM) enables us to identify the type and number of atoms of local crystal structures. A quantification procedure of ADF images was proposed by LeBeau and Stemmer, in which the signal at each pixel is placed on an absolute scale by normalizing the current reaching an ADF detector by the incident probe current [1]. Their procedure made possible a direct comparison between experimental and simulated ADF images without any arbitrary scaling parameters. In this study we acquired quantitative ADF images of a graphene and compared with simulated images to investigate how accurately the scattering intensities match between experiments and simulations.

We used a Titan3 microscope (FEI) equipped with spherical aberration correctors (DCOR and CETCOR, CEOS) operating at an acceleration voltage of 80 kV. An ADF detector (Model 3000, Fischione) and an analog-to-digital (A/D) converter (DigiScan II, Gatan) were used. We evaluated a nonlinear response of the ADF signal detection system, which had not been analyzed. Relationship between an ADF detector current (IADF [pA]) and an ADF image signal (SADF [count]) was measured as shown in Fig. 1. Quantitative contrasts QADF [%], i.e. IADF normalized by the incident probe current I0, were calculated from SADF using the nonlinear response. The quantification procedure was performed using an in-house DigitalMicrograph (Gatan) scripts.

The range of ADF detection angle was experimentally measured. The ADF inner angle (48.4 mrad) was measured by scanning an incident probe on the ADF detector. We found that the ADF outer angle (200 mrad) is limited by the aperture in the microscope column above the ADF detector, and the actual outer angle was measured by observing the shadow of the objective aperture [2]. The STEM image simulation was performed using a multislice program (xHREM with STEM Extension, HREM), in which defocus spread and residual aberrations (up to 5th order) were taken into account.

 

Figure 2 shows (a) a quantitative ADF image of graphene with 1–4 layers and (b) the histogram of the quantitative ADF image. The mean contrast, which was measured by averaging the value in areas including several unit cells, was 0.054% at a single-layer region. Since the mean value of a simulated image was 0.053%, the mean quantitative contrast exhibited excellent agreement between experimental and simulated images. We can instantly decide the number of graphene layers based on the quantitative ADF image.

Next we examined atomic-resolution ADF images of a single layer graphene, as shown in Fig. 3. To reproduce atomic ADF image profiles, an effective source distribution, which corresponds to a demagnified source image on the specimen, should be implemented in STEM simulation. Although a Gaussian function has been often utilized as the effective source distribution, we found that the linear combination between Gaussian and Lorentzian (G+L in Fig. 3c) well reproduces experimental results. We also found that there is a small systematic deviation, which is probably due to time-dependent aberrations (e.g., coma). Highly-stable microscope system and/or real-time aberration assessment are required for the advanced quantitative STEM imaging at atomic resolution.

References:

[1] J M LeBeau and S Stemmer, Ultramicroscopy 108 (2008), 1653.

[2] S Yamashita et al, Microscopy 64 (2015) 143 (doi: 10.1093/jmicro/dfu115).

[3] S Yamashita et al, Microscopy 64 (2015) 409 (doi: 10.1093/jmicro/dfv053).

This study was partly supported by the JST Research Acceleration Program and the Nano Platform Program of MEXT, Japan. The authors thank Dr. T. Nagai, Mr. K. Kurashima and Dr. J. Kikkawa for support in the STEM experiments.


Shunsuke YAMASHITA, Shogo KOSHIYA, Kazuo ISHIZUKA, Koji KIMOTO (Tsukuba, Japan)
15:15 - 15:30 #5050 - IM05-OP103 The atomic lensing model: extending HAADF STEM atom counting from homogeneous to heterogeneous nanostructures.
The atomic lensing model: extending HAADF STEM atom counting from homogeneous to heterogeneous nanostructures.

Counting the number of atoms in each atomic column from different viewing directions has proven to be a powerful technique to retrieve the 3D structure of homogeneous nanostructures [1]. In order to extend the atom counting technique to heterogeneous materials, this work presents a new atomic lensing model facilitating both atom counting and 3D compositional determination in such materials.

In the quantitative evaluation of high angle annular dark field scanning transmission electron microscopy (HAADF STEM) images the so-called scattering cross-section (SCS) has proven to be a successful performance measure [1-3]. Its monotonic increase with thickness can be used to count the number of atoms in homogeneous materials with single atom sensitivity [4]. However, for heterogeneous materials, small changes in atom ordering in the column can change the SCS (Fig. 1), significantly complicating atom counting. This depth dependency requires a quantitative method to predict SCSs of all possible 3D column configurations, already more than 2 million for a 20 atoms thick binary alloy. Image simulations can provide this information, but the amount of required simulations makes it an impossible task in terms of computing time. Therefore, a new atomic lensing model is developed based on the principles of the channelling theory [5], where each atom is considered to be an electrostatic lens resulting in an extra focussing effect on the probe. This model allows one to predict the SCSs of mixed columns based on the lensing factors of the individual atoms in monotonic atomic columns. As compared to a linear model neglecting channelling, this new approach leads to a significant improvement in the prediction of SCSs which is not restricted to the number of atom types (Fig. 2) and can be used for a wide range of detector angles (Fig. 3).

The power of the atomic lensing model to accurately predict SCSs enables one to extend the atom counting technique to heterogeneous materials. Here, simulated SCSs can be matched to the measured experimental SCSs. Next, the 3D structure can be determined by combining atom counts from different viewing directions. In this presentation, this technique will be demonstrated on experimentally recorded images of an Au@Ag nanocrystal. Another advantage of the atomic lensing model is its ability to accurately predict the atom ordering in the column from experimental SCSs (Fig. 1). Therefore, it opens up the possibility to extract 3D information from a single image. This ability will be presented on a simulated image of an Au@Ag nanorod.

In conclusion, a new atomic lensing model is developed which is of great importance for extending the atom counting technique from homogeneous to heterogeneous nanostructures.

 

References

[1] Van Aert et al., Nature 470 (2011), p. 374

[2] Van Aert et al., Ultramicroscopy 109 (2009), p. 1236

[3] E. et al., Ultramicroscopy 133 (2013), p. 109

[4] Van Aert et al., Physical Review B 87 (2013), 064107

[5] Van Dyck et al., Ultramicroscopy 64 (1996), p. 99

 

The authors acknowledge financial support from the Research Foundation Flanders (FWO,Belgium) through project fundings (G.0374.13N, G.0369.15N and G.0368.15N) and research grants to K.H.W. van den Bos and A. De Backer. S. Bals and N. Winckelmans acknowledge funding from the European Research Council (Starting Grant No. COLOURATOMS 335078). The research leading to these results has also received funding from the European Union Seventh Framework Programme [FP7/2007- 2013] under Grant agreement no. 312483 (ESTEEM2).


Karel H W VAN DEN BOS (Antwerp, Belgium), Annick DE BACKER, Gerardo T MARTINEZ, Naomi WINCKELMANS, Sara BALS, Peter D NELLIST, Sandra VAN AERT
15:30 - 15:45 #6452 - IM05-OP111 Mapping 2D strain components from STEM moiré fringes.
Mapping 2D strain components from STEM moiré fringes.

Artificial moirés are created in a STEM by deliberately choosing a low magnification where the scan step is close to the crystalline periodicity (see Figure 1a) [1]. A moiré contrast then results from the interference between the scan and the crystal lattice. The technique has been developed to analyse strain [2], and has been applied to the study of strained-silicon devices [3].

 

In reciprocal space, STEM moiré fringes can be understood as the convolution of the lattice created by the scan, characterized by the scan-step, s in real-space, or s* in reciprocal space, and the reciprocal lattice of the crystalline lattice, characterized by d* (Figure 1b). Interference between neighbouring periodicities gives rise to moiré fringes of periodicity qM. In general, only a few moiré fringe periodicities will be present in the image as the scan reciprocal lattice is in reality multiplied by the MTF of the probe: the size of the probe limits the possible interference terms (indicated by the yellow area in Figure 1b). The moiré peridocity qM is related vectorially to s*, which is usually 1 or 2 pixel-1, and the d* (or g-vector) for a particular set of lattice fringes (Figure 1c).

 

Here we show how the strain information can be extracted using the concept of geometric phase, previously used for the analysis of high-resolution TEM images [4]. The advantage of this formulation is that the moiré fringes do not need to be aligned exactly with the crystalline lattice, thus freeing up the experimental work. The periodicity of the moiré fringes (Figure 2a) is identified from the power spectrum of the image and the corresponding geometric phase determined (Figure 2b). The strain is in turn calculated from the geometric phase (Figure 2c). It is not necessary to know the exact calibration of the original image providing a reference region of known crystal parameter is present, as the vectorial relationship (Figure 1c) provides a strong constraint.

 

We have also developed a procedure to determine maps of the 2D strain tensor from two differently oriented SMFs [5] (Figure 3). The results from two separate moiré fringe images need to be aligned (Figure 3b) and combined to determine the full 2D in-plane strain tensor. Whilst the examples here are simulated, we anticipate presenting experimental results from devices and piezo-electric materials.

 

[1] D. Su and Y. Zhu, Ultramicroscopy 110, 229–233 (2010).

[2] S. Kim, Y. Kondo, K. Lee, G. Byun, J. J. Kim, et al., APL 102, 161604 (2013).

[3] S. Kim, Y. Kondo, K. Lee, G. Byun, J. J. Kim, et al., APL 103, 033523 (2013).

[4] M. J. Hÿtch, E. Snoeck, R. Kilaas, Ultramicroscopy 74, 131–146 (1998).

[5] STEM Moiré Analysis (HREM Research Inc.) a plugin for DigitalMicrograph (Gatan)

 

Acknowledgments

The authors greatly acknowledge to Yukihito Kondo (JEOL) for valuable advice during the development of the DM plug-in. This work was funded through the European Metrology Research Programme (EMRP) Project IND54 Nanostrain. The EMRP is jointly funded by the EMRP participating countries within EURAMET and the European Union. MJH and CG acknowledge the European Union under the Seventh Framework Programme under a contract for an Integrated Infrastructure Initiative Reference 312483-ESTEEM2.


Martin HYTCH (TOULOUSE CEDEX), Christophe GATEL, Akimitsu ISHIZUKA, Kazuo ISHIZUKA
15:45 - 16:00 #5993 - IM05-OP107 Precision and application of atom location in HAADF and ABF.
Precision and application of atom location in HAADF and ABF.

Precision and application of atom location in HAADF and ABF

Yi Wang1, Dan Zhou1*, Wilfried Sigle1, Y. E. Suyolcu1, Knut Müller-Caspary2, Florian F. Krause2, Andreas Rosenauer2, Peter A. van Aken1

1Stuttgart Center for Electron Microscopy, Max Planck Institute for Solid State Research, Heisenbergstraße 1, 70569, Stuttgart, Germany

*Current: Materials Science and Engineering, University of Wisconsin-Madison, 1509 University Avenue, Madison, WI 53706, USA

2Institut für Festkörperphysik, Universität Bremen, Otto-Hahn-Allee 1, 28359 Bremen, Germany

 

The multifaceted magnetic, electrical, and structural functionalities of perovskite oxides are underpinned by the distortions of the crystal lattice [1]. These distortions include the displacement of cations, deformation of oxygen octahedra (BO6, where B is a transition metal atom), and collective tilts of the octahedral network. Controlling and engineering these distortions in the constituent oxides are crucial in designing and fabricating heterostructures with novel functional properties that are absent in the bulk form. Atomistic understanding of these distortions and elucidation of their influence on the final properties requires imaging and measuring of atomic positions of both cations and oxygen. With the application of spherical aberration (Cs) correctors, sub-Angstrom atomic resolution is nowadays regularly achievable in both TEM and STEM. The recent application of the annular bright-field (ABF) imaging technique in perovskite oxides has become increasingly popular, as it enables simultaneous imaging of heavy and light elements and allows for simultaneous acquisition of other signals [2, 3].

Here, we report the development of a software tool, written in Digital Micrograph scripting language [4], to extract quantitative information of the crystal lattice and of oxygen octahedron distortions of perovskite oxides from high-angle annular dark-field (HAADF) and ABF STEM images. Center-of-mass and two-dimensional (2D) Gaussian fitting methods are implemented to locate positions of individual atom columns. As shown in Fig.1, under daily reproducible working conditions, e.g. sample drift and contamination present, the precision is in the range of 3–4 pm. Applications of this tool will be presented.

The accuracy of atom location by ABF can be significantly influenced by atom-column tilts introduced by inadequate alignment by the operator or by strain near crystal defects. The influence of such tilts was quantitatively analyzed using image simulations. Figure 2 shows exemplarily simulated HAADF and ABF images for 0 and 10 mrad tilt [5].

 

References:

 

[1] R H Mitchell “Perovskites: Modern and Ancient”, (Almaz, Thunder Bay)

[2] S D Findlay et al., Appl. Phys. Lett. 95 (2009), p.191913.

[3] E Okunishi et al., Microsc.Microanal.164 (2009), p.15.

[4] D R G Mitchell, B Schaffer, Ultramicroscopy 103 (2005), p.319.

[5] The research leading to these results has received funding from the European Union Seventh Framework Program under Grant Agreement 312483-ESTEEM2 (Integrated Infrastructure Initiative I3).


Yi WANG, Dan ZHOU, Wilfried SIGLE (Stuttgart, Germany), Y. Eren SUYOLCU, Knut MÜLLER-CASPARY, Florian F KRAUSE, Andreas ROSENAUER, Peter VAN AKEN
Salle Prestige Gratte Ciel

"Monday 29 August"

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MS7-II
14:00 - 16:00

MS7: Materials for optics and nano-optics
SLOT II

Chairpersons: David MCCOMB (Chairperson, Columbus, USA), Jérôme PLAIN (Chairperson, Troyes, France)
14:00 - 14:30 #6254 - MS07-S86 Excitonic Properties of Inorganic-Organic Hybrid Perovskites and Nanophotonic Devices.
Excitonic Properties of Inorganic-Organic Hybrid Perovskites and Nanophotonic Devices.

Excitonic Properties of Inorganic-Organic Hybrid Perovskites and Nanophotonic Devices

Qihua Xiong

School of Physical and Mathematic Sciences & School of Electrical and Electronic Engineering

Nanyang Technological University, Singapore, 637371 

Abstract: In this talk, we present investigations of vapor phase synthesis of purely inorganic or organic-inorganic perovskites nanoplatelets by a van der Waals epitaxy mechanism and their excitonic properties. Those crystals exhibit 2D well-faceted triangular, hexagonal or square geometry with thickness range of tens to hundreds of nanometers. Optical spectroscopy investigations suggest that the crystals have large exciton binding energy, high external quantum efficiency and long diffusion lengths. The naturally formed high-quality planar whispering-gallery mode cavities ensure adequate gain and efficient optical feedback for low-threshold optically pumped in-plane nanolasers ranging from ultraviolet and near-infrared, with an exceptionally high quality factor (>4000) in purely inorganic perovskite square-shaped crystals. Our findings open up a new class of wavelength tunable nanomaterials potentially suitable for on-chip integration and flexible optoelectronic devices. Progress in light-emitting diode and laser cooling will also be discussed.

 

References:

  1. S.T. Ha, C. Shen, J. Zhang and Q.H. Xiong*, “Laser Cooling of Organic-inorganic Lead Halide Perovskites”, Nature Photonics 10, 115-121 (2016)
  2. Q. Zhang, S.T. Ha, X.F. Liu, T.C. Sum* and Q.H. Xiong*, "Room-Temperature Near-Infrared High-Q Perovskite Whispering-Gallery Planar Nanolasers", Nano Lett. 14, 5995–6001 (2014)
  3. S.T. Ha, X.F. Liu, Q. Zhang, D. Giovanni, T. C. Sum and Q.H. Xiong*, "Synthesis of Organic–Inorganic Lead Halide Perovskite Nanoplatelets: Towards High-Performance Perovskite Solar Cells and Optoelectronic Devices”, Adv. Opt. Mater. 2, 838-844 (2014)
  4. J. Xing, X. F. Liu, Q. Zhang and Q. H. Xiong*, “Vapor Phase Synthesis of Organometal Halide Perovskite Nanowires for Tunable Room-Temperature Nanolasers”, Nano Lett. 15, 4571 - 4577 (2015).

Qihua XIONG (singapore, Singapore)
Invited
14:30 - 14:45 #5150 - MS07-OP298 Angle-resolved cathodoluminescence of plasmonic crystal waveguide.
Angle-resolved cathodoluminescence of plasmonic crystal waveguide.

Slow-light manipulation in a photonic crystal (PhC) waveguide is expected to improve future optical information processing and communication technologies such as optical buffering and light compression [T. Baba, Nat. Photon. 2, 465-473 (2008)]. Waveguiding using bandgap of plasmonic crystal (PlC) has also been demonstrated [S. I. Bozhevolnyi et al. Phys. Rev. Lett. 86, 3008-3011 (2001)]. However, the dispersion characteristics of the guided modes, which are essential to control surface plasmon polariton (SPP) pulses, have not yet been understood. Electron beam spectroscopies at high spatial resolution are powerful characterization tools to observe electromagnetic modes nowadays. Momentum-resolved spectroscopy in electron microscopy is especially useful to investigate detailed optical properties of locally-modified structures introduced into a PhC [R. Sapienza et al. Nat. Mater. 11, 781-787 (2012)] and a PlC [H. Saito and N. Yamamoto, Nano Lett. 15, 5764-5769 (2015)]. We have studied the dispersion characteristics of SPPs in a PlC waveguide by angle-resolved chatodoluminescence performed in a STEM. The guided SPP modes were found to have two unique features : i) energy dependence of the phase shift at the wall, and ii) waveguide bandgap (WBG) due to the periodicity originating from PlC structure, which resulted in small group velocity of the guided SPP modes over a wide energy range.

The investigated PlC waveguide is composed of a silver dot array with a triangular lattice and silver plane surface as shown in Fig. 1a, which was structured by electron beam lithography and physical deposition. A full bandgap is formed from 1.8 eV to 2.3 eV in the present PlC. The SPPs with the energies in the full bandgap are confined in the flat waveguide area and guided parallel to the Γ-K direction as illustrated in Fig. 1a. Figure 1b shows the dispersion pattern measured in the PlC waveguide area with the waveguide width W of 650 nm, angle-scanned parallel to the direction of the waveguide. The details of the experimental setup for angle-resolved chatodoluminescence measurements are explained elsewhere [K. Takeuchi and N. Yamamoto, Opt. Express 19, 12365-12374 (2011)]. The guided SPP mode is observed (indicated by green ellipse). We also find the small gap about 0.01 nm-1 along the curve. The guided SPP mode can be approximately modelled as the guided wave between two interfaces with total internal reflections considering an energy-dependent phase shift. The details of this model will be explained in the congress. The theoretical curves relatively well fits the experimental curves for various waveguide widths except for the gaps. The measured dispersions indicate that the SPPs in the PlC waveguide become much slower than light in vacuum. The guided SPP in the waveguide with W = 520 nm is 7.5 times slower than light in vacuum. The velocity is even more slowed as the energy approaches the gap about 0.01 nm-1.

To understand the origin of the gap, photon map imaging was performed for W = 1040 nm. Interestingly, the interference fringes appear in the direction of the waveguide with the period of 300 nm, indicating the dot row facing the waveguide causes Bragg reflection, resulting in the WBG. The antinode positions for lower band-edge energy and upper band-edge energy are different from each other as illustrated in Figs. 1c and 1d. The antinodes of the lower band-edge mode are extended between the dots facing the flat waveguide area (Fig. 1c) while the upper band-edge mode is more tightly confined within the flat waveguide area (Fig. 1d). This difference in the effective waveguide width generates the energy difference between the band-edge modes, i.e. WBG.

The present results indicated that the PlC waveguide has potential advantages in manipulation of ultrashort pulses since it follows the linear dispersion with small group velocity over a wide energy range. Although the dispersion mainly inside the light cone was measured in this fundamental study, it could be shifted outside the light cone for a practical use. One of the possible solutions is a use of a hybrid waveguide composed of a dielectric strip on a metal surface [T. Liu et al. Opt. Express 22, 8219-8225 (2014)].

This work was supported by Kazato Research Foundation, the Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT) Nanotechnology Platform 12025014.


Hikaru SAITO (Fukuoka, Japan), Naoki YAMAMOTO, Takumi SANNOMIYA
14:45 - 15:00 #5764 - MS07-OP299 Sub-nanosecond electron beam blanking for deep-subwavelength lifetime probing of nanophotonical devices and nanoparticles.
Sub-nanosecond electron beam blanking for deep-subwavelength lifetime probing of nanophotonical devices and nanoparticles.

Optical techniques are used to probe carrier or excited energy dynamics down to femtosecond time-scales, but they lack the resolution to address nanoscopic length scales [1]. Higher spatial resolution can be obtained using pulsed beams of electrons, but this typically requires dedicated microscopes with laser-triggered electron sources [2]. Here, we use a standard scanning electron microscope equipped with an electrostatic beam blanker operated in conjugate mode (Fig. 1). We show the generation of sub-nanosecond electron pulses (Fig.2). This system is used to probe nanophotonical devices and nanoparticles using time-resolved cathodoluminescence (CL). In these devices, optical emitters couple with the nanoscale environment leading to a position-dependent excited state lifetime. The pulsed electron beam excites the emitters, giving rise to CL. The CL emission is detected using an integrated light microscope [3]. Photon arrival histograms are obtained using time-correlated single photon counting, synchronized with the input signal of the electron beam blanker, thus measuring spatially resolved CL lifetime.

 

We demonstrate the ability to identify nanoparticles based on their lifetime as well as their emission wavelength, which provides an additional source of information in nanoparticle-based biological imaging. Moreover, we conduct a nanoscopic version of the seminal work performed in the 1960s and 1970s by Drexhage, who showed that the lifetime of emitters depends on their distance to a metallic mirror [4]. We locally excite Ce3+ emitters in YAG, which is partially covered with a thin aluminum film (Fig. 3). We then measure the CL lifetime as a function of distance d to the metal, with deep subwavelength (<λ/10) resolution (Fig. 4). Our results firmly establish time-resolved electron spectroscopy of nanophotonical devices as a powerful characterization tool for nanophotonics.

 

 

 

[1]     MacDonald, K. F.; Sámson, Z. L.; Stockman, M. I.; Zheludev, N. I., Ultrafast active plasmonics. Nat. Photonics 2008, 3 (1), 55-58.

[2]     Yang, D. S.; Mohammed, O. F.; Zewail, A. H., Scanning ultrafast electron microscopy. Proc. Natl. Acad. Sci. U. S. A. 2010, 107 (34), 14993-8.

[3]     Zonnevylle, A. C.; Van Tol, R. F.; Liv, N.; Narváez, A. C.; Effting, A. P.; Kruit, P.; Hoogenboom, J. P., Integration of a high-NA light microscope in a scanning electron microscope. J Microsc 2013, 252 (1), 58-70.

[4]     Drexhage, K. H., Influence of a dielectric interface on fluorescence decay time. J. Lumin. 1970, 1–2 (0), 693-701.


Robert MOERLAND, Mathijs GARMING (Delft, The Netherlands), Gerward WEPPELMAN, Pieter KRUIT, Jacob HOOGENBOOM
15:00 - 15:15 #5869 - MS07-OP301 Optically Coupled Plasmonic Nanopores Observed by Cathodoluminescence Scanning Transmission Electronmicroscopy.
Optically Coupled Plasmonic Nanopores Observed by Cathodoluminescence Scanning Transmission Electronmicroscopy.

Control of the optical properties of nano-plasmonic structures is essential for next-generation optical circuits and high-throughput biosensing platforms. Realization of such nano-optical devices requires optical couplings of various nanostructured elements and field confinement at the nanoscale. In particular, symmetric coupling modes, also referred to as “dark modes”, have recently received considerable attention because these modes can confine light energy to small spaces. Although the coupling behavior of plasmonic nanoparticles has been relatively well-studied, couplings of inverse structures, i.e., holes and pores, remain partially unexplored. Even for the most fundamental coupling system of two dipolar holes, comparison of the symmetric and anti-symmetric coupling modes has not been performed. Here, we present a systematic study of the symmetric and anti-symmetric coupling of nanopore pairs using cathodoluminescence by scanning transmission electron microscopy (CL-STEM) and electromagnetic simulation.

The nanopore samples were fabricated by colloidal lithography and film transfer by wet etching of the sacrificial layer. To achieve very close separation of nanopore pairs and to obtain high spatial resolution in STEM, we chose ultra-thin, free-standing film structures. For the measurement of single and coupled pairs of nanopores, 135 nm nanopores in an AlN(8 nm)/Au(16 nm)/AlN(8 nm) trilayer membrane were used (Figure 1b). With this sandwich layer structure, it is possible to obtain very thin and stable metal layers, even at high temperatures.

For CL-STEM measurement, 80 kV acceleration was used to avoid possible damage due to relatively high beam current. (5nA) Depending on the electron beam position it is possible to distinguish the symmetric and anti-symmetric dipolar coupling modes.(Fig. 1) The observed symmetric coupling mode, approximated as a pair of facing dipoles, appeared at a lower energy than that of the anti-symmetric coupling mode, indicating that the facing dipoles attract each other. The anti-symmetric coupling mode splits into the inner- and outer-edge localized modes as the coupling distance decreases. These coupling behaviors cannot be fully explained as simple inverses of coupled disks. Electromagnetic simulation by finite difference time domain (FDTD) also showed consistent coupling behaviors. Models of FDTD simulation showed that the inner- and outer-edge anti-symmetric modes become fully localized with minimal influence of the opposite edges as the coupling distance decreases. Symmetric and anti-symmetric coupling modes are also observed in a short-range ordered pore array (Fig. 2), where one pore supports multiple local resonance modes, depending on the distance to the neighboring pores.


Takumi SANNOMIYA (Yokohama, Kanagawa, Japan), Hikaru SAITO, Junesch JULIANE, Naoki YAMAMOTO
15:15 - 15:30 #6028 - MS07-OP303 Excitation and probing of hyperbolic phonon polaritons in hexagonal boron nitride structures by fast electrons.
Excitation and probing of hyperbolic phonon polaritons in hexagonal boron nitride structures by fast electrons.

Hexagonal boron nitride (hBN) is a representative material of a wide class of two-dimensional systems in which individual atomic layers are only weakly coupled by van der Waals interaction, resulting, among others, in extreme optical anisotropy. The latter gives rise to hBN’s hyperbolic phonon polaritons (h-PhPs), i.e. coupled excitations of optical phonons and light that exhibit hyperbolic dispersion [1, 2] at mid-infrared (mid-IR) energies, specifically in the range of 90-200 meV. Hyperbolic polaritons might be a key to many emerging photonic technologies that rely on nanoscale light confinement and manipulation, such as nanoscale imaging or sensing [3]. Thus, efficient design and utilization of hBN (nano)structures require spectroscopic studies with adequate spatial resolution and energy range.

Electron energy loss spectroscopy (EELS) performed in scanning transmission electron microscope (STEM) is a versatile technique that employs fast electrons as an effective localized electromagnetic probe for spectroscopy with nanoscale spatial resolution. Successfully employed at visible and near-IR energies, this technique has limited capabilities for mid-IR spectroscopy primarily due to lack of monochromaticity of the primary electron beam which typically masks low energy excitations under ~200  meV with the zero loss peak (ZLP) originating from the elastic electron scattering and also limits the spectral resolution to ~100 meV.

Here we demonstrate that by an optimization of microscope data acquistion and signal processing it is possible to significantly reduce the ZLP width down to 50 meV (with corresponding resolution enhancement), placing mid-IR spectroscopy within the reach of standard TEM instruments.

To this end, we perform experimental mapping of the spectral signature at an hBN edge.  As summarized in Fig. a, we clearly observe the variation in spectral peak position as a function of the electron impact parameter (position of the electron beam with respect to the edge). As revealed by our theoretical analysis, this behavior is the manifestation of polaritonic nature of the induced excitations. Indeed, our developed analytical and numerical models of EELS in structured hyperbolic materials show the existence of multiple EEL peaks depending on the impact parameter (see Fig. b). These peaks are due to the reflection of propagating h-PhPs from the hBN edge, which proves that fast electrons can and do couple to the hyperbolic polaritons. After mimicking the experimental spectral resolution (via convolution of the calculated spectra with a Gaussian of proper experimental width), we obtain a good agreement with the experimental data (see Fig. c).

Our work provides first steps in understanding polaritonic excitations produced by fast electrons in hyperbolic materials and sets grounds for the rigorous analysis of the observed low-energy EELS. With the ongoing improvements of STEM-EELS instrumentation [4], we expect further enhancement of the spectral resolution and an extension of the applicable energy ranges in near future, thus enabling EELS in STEM as a versatile technique for infrared spectroscopy of polaritons.

 

 

References:

[1] Dai S. et al. Science 343 (2014), 1125.

[2] Yoxall, E. et al. Nat. Photonics 9 (2015), 674.

[3] Li, P. et al. Nat. Commun. 6 (2015), 7507.

[4] Krivanek, O. L. et al. Nature 514 (2014), 209.


Andrea KONEČNÁ (San Sebastian, Spain), Alexander GOVYADINOV, Andrey CHUVILIN, Irene DOLADO, Saül VÉLEZ, Javier AIZPURUA, Rainer HILLENBRAND
15:30 - 15:45 #6598 - MS07-OP304 Spatiotemporal imaging of few-cycle nanoplasmonic fields using photoemission electron microscopy.
MS07-OP304 Spatiotemporal imaging of few-cycle nanoplasmonic fields using photoemission electron microscopy.

Surface plasmons are capable of concentrating light on both a nanometre spatial and femtosecond temporal scale, thus serving as a basis for nanotechnology at optical frequencies. However, the simultaneously small and fast nature of surface plasmons leads to new challenges for spatiotemporal characterization of the electric fields. An especially successful method for this purpose is photoemission electron microscopy (PEEM) in combination with ultrashort laser pulses. This method uses the high spatial resolution offered by electron microscopy together with the temporal resolution offered by femtosecond laser technology. By combining PEEM with state-of-the-art sources of ultrashort bursts of light, we have contributed to two pathways towards the ultimate goal: the full spatiotemporal reconstruction of the surface electric field at arbitrary nanostructures.

The first approach is based on extending interferometric time-resolved PEEM (ITR-PEEM) [1] to the few light cycle regime by using two synchronized pulses from an ultra-broadband oscillator. Because the photon energy (1.2-2.0 eV) is well below the material work function, photoemission occurs through a multiphoton process. The measurement is performed by scanning the delay between two identical, sub-6 fs pulses and measuring the local photoemission intensity (Fig. 1a). We have applied this method to a variety of nanostructures, including rice-shaped silver particles, nanocubes, and gold bow-tie nanoantennas. As an example, results from the rice-shaped silver nanoparticles are shown in Fig. 1. We excited multipolar surface plasmons at grazing incidence, and imaged the photoelectrons emitted from the two ends of the nanoparticle (Fig. 1b). Upon scanning the delay between the two pulses, the interference fringes measured from the two ends of the nanoparticle are shifted with respect to each other (Fig. 1c). We show that these shifts correspond to locally different instantaneous frequencies of the near-field within the same nanoparticle, and that these differences occur due to a combination of retardation effects and the excitation of multiple surface plasmon modes [2].

The second approach is based on using high-order harmonic generation (HHG) to produce attosecond pulses in the extreme ultraviolet (XUV) region. Attosecond XUV pulses have been proposed to enable a direct spatiotemporal measurement of nanoplasmonic fields with a temporal resolution down to 100 as [3]. However, PEEM imaging using HHG light sources has turned out to be a major challenge due to numerous issues such as space charge effects, chromatic aberration, and poor image contrast [4-6]. To address these issues, we perform HHG using a new optical parametric chirped pulse amplification system delivering 7 fs pulses at 200 kHz repetition rate. We show how the XUV pulses generated by this system allow for PEEM imaging with both higher resolution and shorter acquisition times. For comparison, Fig. 2 shows PEEM images of silver nanowires on a gold substrate, imaged using high-order harmonics at 1 kHz repetition rate (Fig. 2a, acquisition time is 400 s) and at 200 kHz repetition rate (Fig. 2b, acquisition time is 30 s). The image quality is clearly improved (Fig. 2c). We also show how the higher repetition rate allows for PEEM imaging using only primary (“true”) photoelectrons, whereas previous studies have acquired images using secondary electrons [4-6].

[1] A. Kubo et al., Nano Lett. 5, 1123 (2005).

[2] E. Mårsell et al., Nano Lett. 15, 6601 (2015).

[3] M. I. Stockman et al., Nat. Photon. 1, 539 (2007).

[4] A. Mikkelsen et al., Rev. Sci. Instrum. 80, 123703 (2009).

[5] S. H. Chew et al., Appl. Phys. Lett. 100, 051904 (2012).

[6] E. Mårsell et al., Ann. Phys. (Berlin) 525, 162 (2013).


Erik MÅRSELL, Arthur LOSQUIN (Lund, Sweden), Chen GUO, Anne HARTH, Eleonora LOREK, Miguel MIRANDA, Cord ARNOLD, Hongxing XU, Johan MAURITSSON, Anne L'HUILLIER, Anders MIKKELSEN
15:45 - 16:00 #6624 - MS07-OP305 Toroidal dipole plasmon resonance modes in upright split ring resonators.
Toroidal dipole plasmon resonance modes in upright split ring resonators.

Nanoscale split ring resonators (SRRs) have been a popular topic of study due to their surface plasmon resonance (SPR) modes and their many interesting interactions with light. They can be used as components in metamaterials exhibiting, among other properties, a negative refractive index. The surface plasmon properties of these structures are strongly dependent on their size and spatial arrangement. Most studies so far have focussed on the horizontal SRR due to the ease of fabrication. However, there are some advantages to be gained in the design of materials using upright SRRs. We are studying a structure composed of four upright SRRs as shown in Figure 1. The coupling of these four upright SRRs produces a magnetic dipole moment and a toroidal dipole moment.

The toroidal dipole moment, when compared to electric and magnetic dipole moments, shows a higher quality factor and lower gain threshold for a nanoscale laser analogue, the spaser (surface plasmon amplification by stimulated emission of radiation) [1]. The presence of a strong toroidal dipole moment isolated from magnetic and electric dipole moments makes the structure under study a promising candidate for a spaser for use in on-chip telecommunications.

A similar structure was first realized experimentally in the microwave regime of the electromagnetic spectrum [2]. Scaling the geometry down to nanoscale dimensions has been shown by simulation to shift the toroidal dipole energies into the near infra-red regime [1]. In this work we demonstrate the experimental fabrication (Figure 2) and characterization of this structure using electron energy loss spectroscopy (EELS), with confirmation of the modes provided by finite element method (FEM) simulations.

We have fabricated this structure using a double patterning process in electron beam lithography, with precise alignment of the second lithography layer to the first. The structures are made from gold deposited on a 50 nm thick silicon nitride membrane. We probe the plasmon modes using EELS on a monochromated scanning transmission electron microscope, collecting spectrum images with nanometer spatial resolution and 60 meV energy resolution. We extract site-specific spectra (Figure 3a) and energy-resolved maps of the SPR modes (Figure 3b, c). We apply the Richardson-Lucy algorithm to further increase the effective energy resolution and identify the magnetic and toroidal dipole modes at energies of 0.52 eV and 0.72 eV, with SPR maps as shown in Figure 3b and 3c, respectively.

We are able to correlate our EELS results with COMSOL Multiphysics FEM simulations. The simulated SPR response is given in Figure 3a, d, and e, showing close agreement in the peaks with our experimental data. Simulations confirm the low energy magnetic dipole mode (0.56 eV) and reveal two closely spaced toroidal dipole modes (0.61 eV, 0.66 eV) which are not perfectly resolved in the EELS data. We are able to tune the energy and strength of the toroidal dipole moment through tuning of the fabrication parameters; with careful design this structure is a promising spaser design for a range of applications near telecommunications frequencies.

References

[1] Y.-W. Huang, et al., Sci. Rep., vol. 3, Feb. 2013.

[2] T. Kaelberer, et al., Science, vol. 330, no. 6010, pp. 1510–1512, Dec. 2010.

Acknowledgements: We gratefully acknowledge the financial support of NSERC and the province of Ontario.


Isobel BICKET (Hamilton, Canada), Edson BELLIDO, Ahmed ELSHARABASY, Mohamed BAKR, Gianluigi BOTTON
Salle Gratte Ciel 1&2

"Monday 29 August"

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LS1-I
14:00 - 16:00

LS1: Macromolecular assemblies, supra molecular assemblies
SLOT I

Chairpersons: Bettina BOETTCHER (Chairperson, Edinburgh, United Kingdom), Karen DAVIES (Staff Scientist) (Chairperson, Berkeley, USA), Guy SCHOEHN (Chairperson, Grenoble, France)
14:00 - 14:30 #8323 - LS01-S01 Native machinery of membrane-associated protein synthesis.
Native machinery of membrane-associated protein synthesis.

A large fraction of ribosomal synthesis occurs at organellar membranes. At the endoplasmic reticulum (ER), the inner mitochondrial, and the thylakoid membrane, nascent proteins are co-translationally inserted or transported into other compartments. Here, we structurally study membrane-bound ribosomes and their associated machineries in their native settings using cryo-electron tomography (cryo-ET) in combination with subtomogram analysis (Fig. 1).

Studies of ribosomes associated to isolated rough ER vesicles reveal the structure of the native ER translocon, as well as its compositional variability. Core components of the ER translocon are the protein-conducting channel Sec61, the translocon associated protein complex (TRAP), and the sub-stoichiometric oligosaccharyl transferase complex (OST), which all bind to the ribosome. Subnanometer resolution subtomogram averages indicate that the ribosome alone, even without a nascent chain, is sufficient for lateral opening of Sec61, contrary to recent mechanistic models. To elucidate the structures and functions of TRAP and OST in detail, we make use of mutations involved in congenital disorders, as well as their evolutionary diversity across different organisms. Analysis of cryo-tomograms from focused-ion-beam-milled whole cells allows studying the compositional variability of the ER-translocon and the relative arrangement of ER-associated ribosomes in vivo, which reveals a highly characteristic polysome organization.

Mitochondrial ribosomes specialize on the synthesis of few, very hydrophobic membrane proteins. Cryo-electron tomographic analysis of mitochondria isolated from Saccharomyces cerevisiae reveals the binding mode of mitoribosomes to the inner mitochondrial membrane, as well as their molecular organization into polysomes. The structures of mammalian mitoribosomes differ dramatically from their fungal counterparts and we study the consequences of these differences on membrane association and polysome organization. State-of-the-art phase plate imaging helps to overcome the contrast limitations set by the extremely dense and optically barely electron transparent mammalian mitochondria.

Chloroplast ribosomes constitute the third realm of eukaryotic ribosomes. We analyzed the in situ structure and intracellular distribution in green algae. The interaction mode of ribosomes with the thylakoid membrane appears to be much less defined than those of their cytoplasmic and mitochondrial counterparts.

In summary, in situ studies using cryoelectron tomography put atomic-level structural information of ribosomal complexes into context with their associated organellar membranes and their respective co-translational processing machineries, revealing high evolutionary diversity for organelles and organisms.


Stefan PFEFFER, Robert ENGLMEIER, Friedrich FOERSTER (martinsried, Germany)
Invited
14:30 - 15:00 #8743 - LS01-S02 Structure of hibernating ribosomal complexes from Gram-positive pathogenic bacteria Staphylococcus aureus, solved by single particle cryo-EM.
Structure of hibernating ribosomal complexes from Gram-positive pathogenic bacteria Staphylococcus aureus, solved by single particle cryo-EM.

Protein synthesis is a universally conserved process that is assured by a macromolecule called the ribosome (3.4 – 4.5 Mda). In spite of the conservation of the ribosome among all orders of life, its structure presents significant differences between eukaryotes and bacteria. Bacterial ribosome, smaller than its eukaryotic counterpart, presents specific particularities to which we owe the efficiency of numerous commonly used antibiotics that target the latter without hindering protein synthesis in the host. Such structural differences are found in all steps of protein translation.

Here, we attempt to explore by cryo-electron microscopy the ribosomal hibernation, one of the most mysterious regulation processes of protein translation in bacteria. Hibernation is a vital process that can be triggered as a response to stress and aims at shutting down translation in a reversible manner so that translation can recover quickly after the alleviation of stress. Here, we show several 3D reconstructions of hibernation ribosomal complexes from the Gram-positive pathogenic bacteria Staphylococcus aureus. Our structures display the formation of a disome (ribosomal dimer) mediated by a peculiar hibernation factor (HPF), thus setting up the disome in a unique fashion, different than other dimers of known bacterial species indicating the uniqueness of this process in S. aureus and perhaps in gram-positive bacteria more generally. In spite of the size of the imaged asymmetric complexes (~7 Mda, ~550Å diameter), our data-processing yielded several structures after particle sorting presenting an average resolution of ~3.7Å, thus enabling the modelling ab initio of S. aureus HPF, so far of unknown structure.

Our results represent a significant advance and pinpoint a unique process that can be targeted for designing drugs of improved specificity and efficiency against this dangerous pathogen and Gram-positive bacteria more generally.


Iskander KHUSAINOV, Quentin VICENS, Anthony BOCHLER, Alexander MYASINKOV, Srefano MARZI, Pascale ROMBY, Gulnara YUSUPOVA, Marat YUSUPOV, Yaser HASHEM (STRASBOURG CEDEX)
Invited
15:00 - 15:15 #5775 - LS01-OP001 Cryo-electron microscopy structure of La Crosse orthobunyavirus polymerase in presence or absence of viral RNA.
Cryo-electron microscopy structure of La Crosse orthobunyavirus polymerase in presence or absence of viral RNA.

Bunyaviridae is the largest family of segmented negative strand viruses (sNSV) which also include Orthomyxoviridae and Arenaviridae. Central to their viral cycle is the RNA-dependent RNA polymerase which replicates and transcribes the genome segments within circular ribonucleoprotein particles (RNPs). Here we describe a cryo-electron microscopy reconstruction of the full length La Crosse polymerase in complex with viral RNA (Figure 1), together with a reconstruction of its apo truncated form (Δ-Cterminal construct, Figure 2). Combined with the X-ray structure determined in the group, we provide a partial pseudo-atomic model of La Crosse polymerase (Figures 1 and 2). Identification of distinct template and product exit tunnels (Figure 3) and structural analysis of RNP (Figure 4) allows proposal of a detailed model for template-directed replication with minimal disruption to the circularised RNP. The similar overall architecture and vRNA binding of monomeric LACV to heterotrimeric influenza polymerase, despite high sequence divergence, suggests that all sNSV polymerases have a common evolutionary origin and mechanism of RNA synthesis.

Reference: Structural Insights into Bunyavirus Replication and Its Regulation by the vRNA Promoter. Gerlach P*, Malet H*, Cusack S¦, Reguera J¦. Cell. 2015 Jun 4;161:1267-79.


Helene MALET (Grenoble), Piotr GERLACH, Juan REGUERA, Stephen CUSACK
15:15 - 15:30 #6610 - LS01-OP006 Structure-function insights reveal the human ribosome as a cancer target for antibiotics.
Structure-function insights reveal the human ribosome as a cancer target for antibiotics.

Abstract

Many antibiotics in clinical use target the bacterial ribosome by interfering with several mechanistic steps of the protein synthesis machinery. However, targeting the human ribosome in the case of protein synthesis deregulations such as in highly proliferating cancer cells has not been much considered up to now. Here we report the first structure of the human 80S ribosome with a eukaryote-specific antibiotic and show its anti-proliferative effect on cancer cell lines. Structural sorting of the cryo electron microscopy data shows that the cycloheximide ligand induces an equilibrium shift of ribosome subpopulations in different states, revealing that the mechanism of action relies on an active release of the tRNA from the exit site. The structure provides unprecedented insights into the detailed interactions in a ligand-binding pocket of the human ribosome that are required for structure-assisted drug design. Furthermore, anti-proliferative dose response in leukemic cells and interference with synthesis of c-myc and mcl-1 short-lived protein markers reveals specificity of a series of antibiotics towards cytosolic rather than mitochondrial ribosomes, establishing the human ribosome as a promising cancer target. In addition, we present a protocol that primarily uses the crystallographic tools for atomic model building and refinement into cryo-EM maps, as exemplified by our recent human ribosome structure.


Alexander MYASNIKOV, Kundhavai NATCHIAR (Illkirch), Marielle NEBOUT, Isabelle ISABELLE HAZEMANN, Véronique IMBERT, Heena KHATTER, Jean-François PEYRON, Bruno KLAHOLZ
15:30 - 15:45 #6802 - LS01-OP007 Tripartite assembly of RND multidrug efflux pumps in nanodisc and amphipol.
Tripartite assembly of RND multidrug efflux pumps in nanodisc and amphipol.

 

*Two first authors equally contributed to this work

 

Tripartite multidrug efflux systems of Gram-negative bacteria export a large variety of antimicrobial compounds at the expense of ATP or the proton motive force, thereby conferring resistance to a wide variety of antibiotics. Pseudomonas aeruginosa MexAB-OprM and Escherichia coli AcrAB-TolC, are prototypic proton motive force-driven efflux systems from Resistance Nodulation and cell Division (RND) family. These efflux systems, composed of an inner membrane transporter, an outer membrane channel and a periplasmic adaptor protein, are assumed to form ducts inside the periplasm, facilitating drug exit across the outer membrane. Using lipid nanodisc system, we recently reported the reconstitution of native MexAB-OprM tripartite system. Single particle analysis by electron microscopy revealed the lipid nanodisc-embedded inner and outer membrane protein components linked together via the MexA periplasmic adaptor protein [1].

Recently the replacement of detergent by specially designed amphiphilic molecules such as amphipol or styrene–maleic acid copolymers is an alternative option to stabilize the membrane proteins in a free-lipid environment. To further investigate key parameters controlling the formation of the tripartite system, we focus our study on MexA that in its mature form is anchored to the inner membrane via its palmitoyl moiety. To assess whether the lipid anchor is required for the reconstitution, we report here on the reconstitution of OprM and MexB in amphipol and compare with our previous results obtained with nanodiscs.

 

 

[1] Daury L, Orange F, Taveau JC, Verchère A, Monlezun L, Gounou C, Marreddy RK, Picard M, Broutin I, Pos KM, Lambert O (2016). Tripartite assembly of RND multidrug efflux pumps. Nat Commun. 7:10731.


Dimitri SALVADOR, Marie GLAVIER, Cyril GARNIER, Martin PICARD, Isabelle BROUTIN, Jean-Christophe TAVEAU, Laetitia DAURY, Olivier LAMBERT (Bordeaux)
15:45 - 16:00 #6546 - LS01-OP004 The supramolecular packing of the gel-forming MUC5B and MUC2 mucins and its importance for cystic fibrosis.
The supramolecular packing of the gel-forming MUC5B and MUC2 mucins and its importance for cystic fibrosis.

Text:

Introduction: The genetically related gel forming mucins, MUC2 (intestine), MUC5B (airways), MUC5AC (airways, stomach) and MUC6 (stomach) have large sizes with heavily glycosylated mucin domains in the central part. The C-termini form intermolecular dimers. The N-terminal regions are evolutionarily similar with identical domain organization important for the oligomerization. MUC5B is vital for normal mucociliary clearance of the lungs whereas MUC2 in colon forms an inner dense and attached stratified layer impermeable to bacteria, and an outer loose and unattached layer habituating commensal bacteria. The MUC2 N-terminus (D1-D2-D′D3 domains) was shown to form concatenated polygone-structures under low pH- and high calcium conditions (1).
The Aim is to understand the cellular packing of the MUC5B and MUC2 mucins and how this influences their secretion.
Method: The N-terminal and D´D3 domains of MUC2 and MUC5B were expressed, purified and then analyzed by subsequent gel filtration, transmission electron microscopy and single particle image processing.
Results: MUC5B multimerizes by disulfide bonds between the D3-domains giving the MUC5B polymer a linear structure (2). Analysis of the MUC5B N-terminus at lower pH and higher calcium concentration revealed a tight dimer+dimer packing where the second dimer is turned upside down by 180 degrees and then slightly rotated. This way of packing the MUC5B in the granulae will allow a slow unwinding of a linear molecule.
Conclusion: The MUC5B and MUC2 mucins are packed in the mucin granulae in a way allowing the formation of linear strands or net-like structures, respectively.

References:
1. Ambort, D., Johansson, M. E. V., Gustafsson, J. K., Nilsson, H., Ermund, A., Johansson, B. R., Koeck, P. J. B., Hebert, H., and Hansson, G. C. (2012) Proc. Natl. Acad. Sci. U. S. A. 109, 5645-5650
2. Ridley, C., Kouvatsos, N., Raynal, B. D., Howard, M., Collins, R. F., Desseyn, J. L., Jowitt, T. A., Baldock, C., Davis, C. W., Hardingham, T. E., and Thornton, D. J. (2014) J. Biol. Chem. 289, 16409-16420

 


Harriet E. NILSSON (Huddinge, Sweden), Sergio MUYO TRILLO, Anna ERMUND, Malin BÄCKSTRÖM, Elisabeth THOMSSON, Daniel AMBORT, Philip J. B. KOECK, David J. THORNTON, Gunnar C. HANSSON, Hans HEBERT
Salle Tête d'or 1&2

"Monday 29 August"

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LS7-I
14:00 - 16:00

LS7: Organism development and imaging
SLOT I

Chairpersons: Grégoire MICHAUX (Chairperson, Rennes, France), Cristina PUJADES (co-chair) (Chairperson, Barcelona, Spain)
14:00 - 14:30 #8649 - LS07-S22 Eavesdropping on the molecular signatures of embryonic development.
Eavesdropping on the molecular signatures of embryonic development.

The study of embryonic development has been dramatically advanced by the wealth of high-throughput molecular studies that have defined the genes and proteins involved.  This wealth of data now presents the challenge of integrating a working knowledge of how these molecular components, often present at vanishingly small concentrations, generate reliable patterns of cell migration and cell differentiation.  In typical cell biology approaches, cultures of isolated cells have been used reveal mechanism.  What is needed to understand development is to carry out studies on cells in their normal context interacting with other cells and signals in the intact embryo.  Key events of embryonic development take place over dimensions of less than 500um in less than 5 hours, making it tractable for light imaging tools to be used to answer this challenge.   

 Imaging techniques are challenged by major tradeoffs between spatial resolution, temporal resolution, and the limited photon budget.  We are attempting to advance this tradeoff by constructing light sheet microscopes that maintain subcellular resolution in thick and scattering specimens.  Our two-photon light-sheet microscope, combines the deep penetration of two-photon microscopy and the speed of light sheet microscopy to generate images with more than ten-fold improved imaging speed and sensitivity.  As with other light sheet technologies, the collection of an entire 2-D optical section in parallel offers dramatically speeds acquisition rates.  By adopting two-photon SPIM is far less subject to light scattering, permitting subcellular resolution to be maintained far better than conventional light sheet microscopes.  The combination of attributes permits cell and molecular imaging with sufficient speed and resolution to generate unambiguous tracing of cells and signals in intact systems, which presents a major challenge in data management, processing and analysis. 

Multispectral imaging offers the chance of asking multiple questions of the same embodied cells.  Multiplex analyses permit the variance and the “noise” in a system to be exploited by asking about the analytes that co-vary with a selected gene product.  Transforming fluorescent spectra to a point on a 2D-plot with sinusoidal functions (phasors) provides a powerful tool for the cumbersome tasks of visualizing and analyzing hyper-spectral imaging data.  This technique offers excellent performance in the face of biological and instrumental uncertainties. Our results on live zebrafish embryos document the accuracy of hyper-spectral phasors and demonstrates their capability to distinguish multiple spectrally overlapping fluorophores in low signal-to-noise and fast analysis time.

Combined, these tools offer the multi-dimensional imaging required to follow key events in embryos as they take place, and allow us to use variance as an experimental tool rather than a limitation. 


Scott FRASER (Los Angeles, USA)
Invited
14:30 - 14:45 #4890 - LS07-OP028 Germ-line cysts organisation in clitellate annelids – from electron microscopy to live cell imaging.
Germ-line cysts organisation in clitellate annelids – from electron microscopy to live cell imaging.

 

At the onset of gametogenesis in animals, the germ-line cells usually form syncytial cysts (clusters). The germ cells in such cysts are interconnected by wide cytoplasmic channels known as intercellular (cytoplasmic) bridges that are modified contractile rings that do not close during late cytokinesis. These bridges ensure the cytoplasmic continuity between the interconnected cells and, as a result, the cytoplasm of the sister cells is common. It is believed that the interconnections of germ cells into syncytial clusters regulate and synchronise germ cell development. However, it seems that the actual role of the cell clustering is sex dependent.

                The germ-line cyst architecture (spatial organization) varies between taxa. Currently, we know several different modes of cysts organisation. The best characterised examples are: linear cysts in which the interconnected cells form chains (e.g. mammal spermatogenesis); branched cysts in which some cells may have more than two intercellular bridges and, as a result, “branchings” occur in these sites (e.g. male and female cysts in Drosophila); and cysts with germ cells that are clustered around a central anuclear mass of cytoplasm (e.g. in C. elegans).

              Clitellate annelids (Clitellata) is a monophyletic taxon of segmented worms, which comprises earthworms and their allies and leeches. At the early stages of spermatogenesis and oogenesis in Clitellata, germ-line cysts are also formed (with one known exception – female cells in Capilloventer australis). In both lines, male and female, the cysts have the same basal plan of organization – each germ cell is connected to the central and anuclear cytoplasmic mass, the cytophore via one cytoplasmic bridge (Fig. 1 and 2). However, the cyst morphology may differ substantially between taxa and even between sexes in the same specimen. These differences may be caused by: a different number of interconnected germ cells (from 16 in the pot worm Enchytraeus albidus (Fig. 2) to over 2 000 in the sludge worm Tubifex tubifex (Fig. 3)); a different shape and ratio of cytophore development (the cytophore in male cysts is usually spherical and well developed, while in female cysts the cytophore usually has the form of long cytoplasmic strands and is often poorly developed). Additionally, whereas male cysts are not associated with somatic cells, female clusters are usually enveloped by somatic cells and together form characteristic structures such as egg follicles or ovary cords.

              During our long-term studies, we have analysed the formation, architecture and functions in both male and female germ-line clusters in several representatives of clitellate annelids (e.g. the earthworm Dendrobaena veneta, the pot worm E. albidus, a sludge worm T. tubifex and the European medicinal leech Hirudo medicinalis). Using classical (light and fluorescent microscopy, electron microscopy) and modern tools (live cell imaging see Fig. 4, 3D reconstructions in scanning electron microscopy – SBEM method), we have revealed, among others, the great plasticity in cyst architecture and sex-dependent differences in their functions.

Acknowledgements This work was partially funded by National Science Centre, Poland. Contract grant number: DEC-2012/05/B/NZ4/02417.


Piotr ŚWIĄTEK, Anna Z. URBISZ, Karol MAŁOTA, Szymon GORGOŃ, Natalia JAROSZ, Piotr ŚWIĄTEK (Katowice, Poland)
14:45 - 15:15 #8757 - LS07-S23 Optical investigation of a novel sensory interface linking spinal fluid to motor circuits in vivo.
Optical investigation of a novel sensory interface linking spinal fluid to motor circuits in vivo.

The cerebrospinal fluid (CSF) is a complex solution circulating around the brain and spinal cord. Behavior has long been known to be influenced by the content and flow of the CSF, but the underlying mechanisms are completely unknown. CSF-contacting neurons by their location at the interface with the CSF are in ideal position to sense CSF cues and to relay information to the nervous system. By combining electrophysiology, optogenetics, bioluminescence monitoring with calcium imaging in vivo, we demonstrate that neurons contacting the CSF in the spinal cord detect local bending and in turn feed back GABAergic inhibition to multiple interneurons driving locomotion in the ventral spinal cord. Behaviour analysis of animals deprived of this mechano-sensory pathway reveals its contribution in modulating key parameters of locomotion. Altogether our approach developed in a transparent animal model shed light on a novel pathway enabling sensory motor integration between the CSF and motor circuits in the spinal cord.

 

References

Djenoune et al., Frontiers in Neuroanatomy 2014.

Fidelin et al., Current Biology 2015.

Bohm et al., Nature Communications 2016.

Hernandez et al., Nature Communications 2016.

Sternberg et al., Current Biology, in press.

Hubbard et al., Current Biology, in revision.

Knafo et al., submitted.


Claire WYART (Paris)
Invited
15:15 - 15:30 #6574 - LS07-OP029 The posterior neural plate in axolotl can form mesoderm or neuroectoderm.
The posterior neural plate in axolotl can form mesoderm or neuroectoderm.

Gastrulation is the developmental process where germ layers are formed. It was generally assumed that germ layer specification is finished by the end of gastrulation. However, previous studies in amphibians revealed that posterior neural plate and fold, although traditionally regarded as neural, have a mesodermal bias and give rise to tail and posterior trunk muscles whereas only more anterior regions give rise to spinal chord [1-4]. In addition, recent studies in zebrafish, chick, and mouse revealed bipotential stem cell populations at the posterior ends of these embryos. The stem cells can give rise to neural and mesodermal tissues depending on local signaling in the tail bud [5-7]. Here, we reinvestigated morphogenesis and fate of the posterior neural plate in an amphibian model, the axolotl (Ambystoma mexicanum), using GFP-labeled grafts of the posterior third of the neural plate (reg. 3; stage 15; Figure 1) for detailed lineage analysis. In situ hybridisation with riboprobes against mesodermal (brachyury, bra) and neuronal/stem cell (sox2) markers revealed an ambiguous determinative state of reg. 3 at the time of transplantation. While its central and posterior part is bra-positive, small left and right anterior regions expressed sox2. The more anterior plate regions 2 and 1 are sox2-positive and bra-negative. The border of the two markers is ill defined and shows some overlap. Histological analysis of reg. 3 grafts at early tailbud stages revealed that the cells of the most posterior part of reg. 3 start moving from dorsal to ventral forming the posterior wall. Then they turn anteriorly, become connected with paraxial presomitic mesoderm and form somites on either side of the embryo (Figure 1). As a result of this movement, the posterior half of reg. 3 gives rise to posterior trunk and anterior tail somites whereas the anterior half forms posterior tail somites and tail spinal cord. Only cells that conduct this anterior turn and pass the Wnt/b-catenin positive posterior wall will contribute to paraxial mesoderm. Cells that remain in the dorsal part of the tail-bud eventually form lateral and dorsal parts of the tail spinal chord. The floor plate of the posterior spinal chord and the axial mesoderm do not contain any reg. 3 cells which indicates that they may be formed from the chordoneural hinge, a connection between the posteriormost reg. 2 cells and the tip of the notochord [8]. Additional grafting experiments showed that the notochord is formed from axial mesoderm that was already involuted during gastrulation and underwent massive elongation, presumably by convergence and extension. Therefore, axial and paraxial mesoderm of the tail are formed by different mechanisms and are probably specified at different time points, i.e. during gastrulation and tail bud development.

Taken together, these data show that germ layer specification is not complete after gastrulation, but that part of the putative neural plate is specified during morphogenetic movements of tail bud stages in order to become paraxial mesoderm.

 

[1]        JH Bijtel, Roux Arch. EntwMech. Organ. 125 (1931) 448-486

[2]        AS Tucker and JMW Slack, Curr. Biol. 5 (1995) 807-813

[3]        CW Beck, WIREs Dev Biol 4 (2014) 33-44

[4]        Y Taniguchi, T Kurth, et al., Sci. Rep. 5 (2015) 11428

[5]        BL Martin and D Kimelman, Dev. Cell 22 (2012) 223-232

[6]        CM Bouldin, AJ Manning, et al., Development 142, 2499-2507

[7]        H Kondoh and T Takemoto, Curr. Opin. Genet. Dev. 22 (2012) 374-380

[8]        LK Gont, H Steinbeisser, et al., Development 119 (1993) 991-1004

[9]        Financial support by DFG (EP 8/11-1) is gratefully acknowledged.


Yuka TANIGUCHI, Thomas KURTH (Dresden, Germany), Verena KAPPERT, Saskia REICHELT, Susanne WEICHE, Akira TAZAKI, Cora RÖHLECKE, Hans-Henning EPPERLEIN
15:30 - 16:00 #7505 - LS07-S24 Tracking tumor metastasis in vivo at high-resolution.
Tracking tumor metastasis in vivo at high-resolution.

Three reasons explain why most of the critical events driving normal and pathological scenarios had been less investigated: they occur rarely in space and time, they are highly dynamic, they differ when studied in situ in an entire living organism. Metastasis is the primary cause for cancer-related mortality, but its mechanisms remain to be elucidated. Intravital imaging has opened the door to in vivo functional imaging in animal models of cancer, however it is limited in resolution. Ultrastructural analysis of tumor metastasis in vivo has so far been hindered by the limited field of view of the electron microscope, making it difficult to retrieve volumes of interest in complex tissues. We recently developed a multimodal correlative approach allowing us to rapidly and accurately combine functional in vivo imaging with high-resolution ultrastructural analysis of tumor cells in a relevant pathological context. The multimodal correlative approach that we propose here combines two-photon excitation microscopy (2PEM), microscopic X-ray computed tomography (microCT) and three-dimensional electron microscopy (3DEM). It enables a rapid and accurate correlation of functional imaging to high-resolution ultrastructural analysis of tumor cells in a relevant pathological context. As an example, we are now capable of providing high- and isotropic (8nm) resolution imaging of single metastasizing tumor cells previously imaged in the process of extravasation in the living mouse brain. This reliable and versatile workflow offers access to ultrastructural details of metastatic cells with an unprecedented throughput opening to crucial and unparalleled insights into the mechanisms of tumor invasion, extravasation and metastasis in vivo.


Jacky GOETZ (Strasbourg)
Invited
Salon Tête d'Or

"Monday 29 August"

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SCUR - I
14:00 - 16:00

The Skin Imaging Society meeting
SLOT I

14:00 - 14:10 Opening of the SCUR meeting.
14:10 - 15:10 Session 1. Oral communications.
15:10 - 16:00 Invited lecture: Recent advances in cryomethods for skin studies. Roger A. WEPF (Invited speaker, Zürich, Switzerland)
Salle Gratte Ciel 3
16:30

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SCUR - II
16:30 - 19:00

The Skin Imaging Society meeting
SLOT II

16:30 - 17:30 Session 2. Oral communications.
17:30 - 19:00 Annual General Assembly of SCUR.
Salle Gratte Ciel 3
Tuesday 30 August
08:45

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PL3
08:45 - 09:45

Plenary Lecture 3

08:45 - 09:45 Plenary Lecture 3 - Can phase manipulation turn TEM into an even more versatile instrument? Johan VERBEECK (Plenary Speaker, Belgium)
Amphithéâtre

"Tuesday 30 August"

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SCUR - III
08:45 - 09:45

The Skin Imaging Society meeting
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08:45 - 09:45 Session 3. Posters – free visit, discussion with the presenters.
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10:15

"Tuesday 30 August"

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IM2-III
10:15 - 12:30

IM2: Micro-Nano Lab and dynamic microscopy
SLOT III

Chairpersons: Francisco José CADETE SANTOS AIRES (Chairperson, VILLEURBANNE CEDEX, France), Niels DE JONGE (Chairperson, Saarbrücken, Germany), Gerhard DEHM (Chairperson, Düsseldorf, Germany)
10:15 - 10:45 #8421 - IM02-S36 Scanning Probe Microscopy goes Live: seeing dynamic phenomena with STM.
Scanning Probe Microscopy goes Live: seeing dynamic phenomena with STM.

Scanning Tunneling Microscopy (STM) and other forms of Scanning Probe Microscopy (SPM), are traditionally applied mainly to static structures that are investigated mainly under relatively artificial conditions, such as ultrahigh vacuum (UHV). This is surprising in the light of the relative insensitivity of the operation mechanism of STM and that of most other types of SPM to such aspects as temperature or gas pressure or even the presence of liquids.

In this talk, I will demonstrate that it is possible to apply SPM techniques without compromising their atomic resolution even under harsh conditions [1-4]. Extra attention is required to construct the SPM instrumentation such that it avoids the complications that are introduced by these conditions, such as excessive thermal drift or damage to delicate components. This is, in principle, a straightforward engineering task, which leads typically to dedicated designs for specific classes of imaging conditions [1-4].

The examples provided in this talk are all live STM observations of relevant dynamic surface phenomena. They range from model catalysts under the conditions of high temperatures and high pressures at which they are being used in the chemical industry, to the chemical vapor deposition of graphene on metal substrates and the atom-by-atom deposition or erosion of surfaces under the influence of atom and ion beams.

 References

1.  M.S. Hoogeman et al., Rev. Sci. Instrum. 69, 2072 (1998).

2.  M.J. Rost et al., Rev. Sci. Instrum. 76, 053710 (2005).

3.  C.T. Herbschleb et al., Rev. Sci. Instrum. 85, 083703 (2014).

4.  S.B. Roobol et al., Rev. Sci. Instrum. 86, 033706 (2015).

5.  G. Dong, D.W. van Baarle, M.J. Rost and J.W.M. Frenken, ACS Nano 7, 7028  (2013).


Joost FRENKEN (Leiden, The Netherlands)
Invited
10:45 - 11:00 #5751 - IM02-OP058 Operando electron microscopy in heterogeneous catalysis.
Operando electron microscopy in heterogeneous catalysis.

Visualizing nanoparticles at atomic-resolution by transmission electron microscopy (TEM) is beneficial for the understanding of their physico-chemical properties. However, nanoparticles respond dynamically to changes in the surrounding gas or liquid environment, and such changes can have profound impact on their properties. It has therefore remained a long-standing challenge in heterogeneous catalysis and related chemical fields to functionalize TEM for operando studies in which the state and functionality of nanoparticles are simultaneously evaluated at the atomic-scale under catalytically meaningful reaction conditions [1].

Recent, we have developed a nanoreactor that enables atomic-resolution TEM of catalysts at ambient pressure conditions and elevated temperatures [2-5]. The nanoreactor is a micro-electro-mechanical system (MEMS) device that integrates a micrometer-sized and unidirectional gas-flow channel with a micro-heater and an array of electron-transparent SiNx windows (Fig. 1). This nanoreactor design also allows concurrent mass-spectrometry, calorimetry and electron energy loss spectroscopy of changes occuring in the gas phase during catalysis. Hereby, the nanoreactor enables operando TEM studies in heterogeneous catalysis [6].

Here, we showcase operando TEM movies that correlate the atomic-scale dynamics of Pt nanoparticles with their catalytic activity for the CO oxidation at relevant pressure and temperature conditions (Fig. 2) [6,7]. This reaction has long served as the prototypical example for oscillating chemical reactions. The movies surprisingly show that the catalytically active surface sites undergo periodic and reversible changes that are synchronous with the oscillations in the reaction rate. The atomic-resolution TEM was performed under low electron dose-rate conditions to surpress beam-induced alterations [6,8], and the observations were location-dependent due to the mass- and heat-distributions across the reaction zone [6,7]. In interplay with density functional theory, microkinetic and mass- and heat-transport calculations, the operando TEM observations unveiled a mechanism for the oscillatory behavior based on the difference in CO adsorption energy and oxidation rate on the prevalent Pt surface terminations. Thus, operando TEM can extend the description of dynamics and functionality in catalysis with atomic-scale information that is specific to the surface sites, and bridge simultaneously both the so-called materials and pressure gap in catalysis and surface science.

References:  

[1] S. Helveg, J. Catal. 328, 102 (2015)

[2] J.F. Creemer, S. Helveg, G.V. Hoveling, S. Ullmann, A.M. Molenbroek, P.M. Sarro, H.W. Zanbergen, Ultramicroscopy 108, 993 (2008)

[3 ] J.F. Creemer, S. Helveg, P.J. Kooyman, A.M. Molenbroek, H.W. Zandbergen, P.M. Sarro, J. Microelectromech. Systm. 19, 254 (2010)

[4] J.F. Creemer, F. Santagata, B. Morana, L. Mele, T. Alan, E. Lervolino, G. Pandraud, P.M. Sarro, Proc. 2011 IEEE  24th Int. Conf. MEMS 1103-1106  (2011)

[5] S.B. Vendelbo, P.J. Kooyman, J.F. Creemer, B. Morana, L. Mele, P. Dona, B.J. Nelissen, S. Helveg, Ultramicroscopy 13, 72 (2013)

[6] S.B. Vendelbo, C.F. Elkjær, I. Puspitasari, J.F. Creemer, P. Dona, L. Mele, B. Morana, B.J. Nelissen, R. van Rijn, P.J. Kooyman, S. Helveg, Nature Mater 13, 884 (2014)

[7] C.F. Elkjær, S.B. Vendelbo, P. Kooyman, S. Helveg, in preparation  (2016)

[8] S. Helveg, C.F. Kisielowski, J.R. Jinschek, P. Specht, G. Yuan, H. Frei, Micron 68, 176 (2014)


Christian F. ELKJÆR, Søren VENDELBO, Patricia J. KOOYMAN, Stig HELVEG (Kgs. Lyngby, Denmark)
11:00 - 11:15 #7066 - IM02-OP078 High resolution environmental TEM investigation of the catalytic channeling of few-layer graphene.
High resolution environmental TEM investigation of the catalytic channeling of few-layer graphene.

As the 2D graphene flakes are zero-gap semiconductors, one strategy proposed for the fabrication of graphene structures with a finite bad gap was its patterning in quasi-one dimensional (1D) shapes called graphene nanoribbons (GNRs)1. Several methods have been developed to fabricate GNRs, such as direct chemical routes2, unzipping carbon nanotubes3 or graphene/FLG flakes nanopatterning4. The catalytic nanopatterning of FLG using metallic nanoparticles (MNPs) as “nanoscissors” is one of the most promising methods. Under well-controlled conditions, a number of MNPs supported on graphene-based structures act as mobile nanoreactors able to pattern the graphene support with a nanometer precision. At the origin of the nanoparticles’ “graphene cutting” lies their capacity to dissolve carbon and catalyze, at high temperatures, gas-carbon reactions. Transmission electron microscopy (TEM) plays an important role in the investigation of the metal-catalyzed gas-graphite reactions. However, ex-situ TEM approach offers a limited perspective over the dynamic behavior of the catalyzed reaction. Environmental TEM (ETEM) is a more appropriate technique for investigating dynamical processes, offering in real-time imaging and chemical analyses at atomic resolution.

            In this study we present a complete ETEM investigation of the catalytic nanopatterning of FLG by metallic iron nanoparticles (FeNPs) performed in a dedicated environmental Atmosphere (Protochips) cell.  At first the influence of a number of parameters, such as the structure of the initial magnetite nanoparticles on the channeling activity is carefully investigated. This analysis shows that incompletely reduced FeNPs cannot sustain a well-defined channeling activity that is specific only for pure metallic FeNPs for which a specific crystallographic orientation formed between the metallic nanoparticle and the graphene edge is controlling their motion. In the second part, the ETEM reaction setup is controlled at such an extent that it allows the real-time imaging of nanoparticles at high resolution. We show that the nanoparticles’ frontal facets, i.e. the facets sustaining the carbon dissolution from the graphene edges, presents a continuous nanometer-sized “waving” during the channeling activity as an effect of the constant carbon dissolution and its diffusion from the contact area to the rear facets of the nanoparticle. The real-time imaging of the rear facet of the nanoparticle shows an even more interesting phenomenon, e. g. the formation of graphitized nanosized carbon structure with a very short lifetime as well as of amorphous carbon tails. Their location together with their evolution during channeling reveals important aspects concerning catalytic channeling mechanism. The last part deals with a number of aspects related with the nanoparticles motion on the graphene subtracted such as the changes in the channeling direction or the channeling rates. As shown in Fig. 1, the changes in the cutting directions are a very complex phenomenon where the restructuration of the nanoparticle and especially the rearmament of the frontal faceting geometry play the most important role. The causes of the cutting directions changes can be separated in two categories, one related with a gradient of the carbon dissolved in the nanoparticle and one caused by “external” uncontrolled factors as the position fluctuations of the carbon tail.

1. Han, M., Özyilmaz, B., Zhang, Y. & Kim, P. Energy Band-Gap Engineering of Graphene Nanoribbons. Phys. Rev. Lett. 98, (2007).
2. Narita, A. et al. Synthesis of structurally well-defined and liquid-phase-processable graphene nanoribbons. Nat. Chem. 6, 126–132 (2014).
3. Jiao, L., Zhang, L., Wang, X., Diankov, G. & Dai, H. Narrow graphene nanoribbons from carbon nanotubes. Nature 458, 877–880 (2009).
4. G. Melinte, I. Florea, S. Moldovan, I. Janowska, W. Baaziz, R. Arenal, A. Wisnet, C. Scheu, S. Begin-Colin, D. Begin, C. Pham-Huu, O. Ersen, Nat Commun. 5, 2014.


G. MELINTE (Strasbourg), S. MOLDOVAN, D IHIAWAKRIM, W BAAZIZ, S BÉGIN-COLIN, C HIRLIMANN, C PHAM-HUU, O ERSEN
11:15 - 11:30 #6344 - IM02-OP066 Using in situ environmental transmission microscopy and operando X-ray absorption spectroscopy to investigate ceria based diesel oxidation catalysts.
Using in situ environmental transmission microscopy and operando X-ray absorption spectroscopy to investigate ceria based diesel oxidation catalysts.

A knowledge-based design of catalysts requires the determination of so-called structure-activity-relationships. Such correlations between the catalytic activity and its properties on the microscopic and macroscopic scales help to identify new routes for improving state-of-the-art and to develop new generations of catalytic systems. However, in particular at the microscopic level, certain properties of the catalyst, like for example the oxidation state and the morphology of noble metal nanoparticles, can be influenced by the temperature and the atmosphere [1, 2]. As a consequence, it is mandatory to obtain such information under working conditions ("operando").

This accounts in particular for automotive exhaust gas catalysts [3-5]. In the present study, ceria supported catalysts were investigated for application as diesel oxidation catalysts. In contrast to catalysts not supported on ceria, their activity strongly depended on the pre-conditioning. As previously observed, the activity could be significantly enhanced with respect to low temperature CO and hydrocarbon oxidation, by short reducing pulses (lean/rich-treatment) at moderate temperatures [6]. Since such treatments could be exploited in a car from the technological point of view it is of high interest to understand the origin and the mechanism of this activation step. Hence, a comprehensive approach was applied appreciating especially the importance of a catalyst characterization in relevant conditions (pressure and temperature). In this regard in situ environmental transmission electron microscopy (ETEM) was applied together with operando quick-scanning X-ray absorption spectroscopy (QEXAFS).
According to the QEXAFS data obtained on Pt/CeO2/Al2O3 the low temperature activity of the catalyst was found to be improved (Figure 1), after the Pt oxidation state got reduced  effectively during a lean/rich treatment (Figure 2), e.g. by using CO as reductant. After activation, however, the catalyst got deactivated again during the subsequent light-off experiment, if treated at too high temperature, accompanied by Pt oxidation. Complementary  ETEM studies offered a closer look on the processes on the catalyst surface, e.g. of a reductively treated Pt/CeO2 catalyst in an oxidizing atmosphere at elevated temperatures (10 mbar O2, 400 °C). Prominent structural changes were found depending on the reaction atmosphere. Upon treatment similar to those where XAS evidenced deactivation of the catalyst and Pt oxidation, the disappearance of most of the smallest Pt particles was observed (Figure 3) and a lower number of larger particles were found to remain. The disapperance of small Pt particles could represent a possible deactivation pathway due to redispersion of Pt atoms at elevated temperatures. Hence, ETEM experiments confirmed the strong structural dynamics at the microscopic level of the catalyst, which probably represent the origin of the catalysts activation and deactivation and will be further exploited in future.

References
[1] Weckhuysen B M, In situ Spectroscopy of Catalysts, American Scientific Publishers (2004) 255-270
[2] Grunwaldt J-D, Wagner J B and Dunin-Borkowski R E, ChemCatChem 5 (2013) 62-80
[3] Deutschmann O and Grunwaldt J-D, Chem. Ing.Tech. 85 (2013) 595-617
[4] Doronkin D E, Casapu M, Günter T, Müller O, Frahm R and Grunwaldt J-D, J.Phys.Chem.C. 118 (2014) 10204-10212
[5] Gänzler A M, Casapu M, Boubnov A, Müller O, Conrad S, Lichtenberg H, Frahm R and Grunwaldt J-D, J. Catal. 328 (2015) 216-224
[6] Hoyer R, Schuler A, Franoschek S, Pauly T R and Jeske G, WO 2013/149881 A1, October 22, 2014

[7] The authors thank the BMBF-ANR project ORCA (Oxidation-Reduction-Catalyst, BMBF-19U15014B, ANR-14-CE22-0011-02) for financial support, the synchrotron beamlines SuperXAS (SLS, Villigen), ROCK (SOLEIL, Paris) and XAS (ANKA, Karlsruhe) for beamtime and the CLYM for access to the Ly-EtTEM.


Andreas M. GÄNZLER (Karlsruhe, Germany), Maria CASAPU, Géraldine FERRE, Francisco J. CADETE SANTOS AIRES, Mimoun AOUINE, Christophe GEANTET, Thierry EPICIER, Philippe VERNOUX, Jan-Dierk GRUNWALDT
11:30 - 11:45 #5261 - IM02-OP055 In-situ E(S)TEM Observations of Single Atom Dynamics in Catalytic Reactions.
In-situ E(S)TEM Observations of Single Atom Dynamics in Catalytic Reactions.

In heterogeneous catalysis gas (or liquid)-solid catalyst reactions take place at the atomic level at elevated temperatures. Understanding and control of complex catalytic reactions on the atomic scale are crucial for the rational development of improved catalysts and processes. The development of the first atomic resolution environmental (scanning) transmission electron microscope (E(S)TEM) is described (1-6) including for the direct visualisation of reacting individual atoms in gas-solid reactions in the working state in real time (3-6), opening up striking new opportunities for studies of catalysis at the atomic level.  Our development of the atomic resolution ETEM (2) is now used globally.  Benefits of the in-situ studies include new knowledge, improved and more environmentally beneficial technological processes for healthcare and renewable energy as well as better or replacement mainstream technologies in the chemical and energy industries.

Examples include heterogeneous catalysis of biomass conversion into bioenergy and water gas shift (WGS) reaction (employing carbon monoxide and water) which is the basis of heterogeneous catalysis important in the generation of clean hydrogen energy for fuel cells, transportation fuels and in ammonia manufacture (7). Potential supported noble metal catalysts are examined for low temperature WGS catalysis (Fig.1) and compared with reaction data and modelling. The in-situ observations in WGS have revealed the formation of clusters of only a few noble metal atoms resulting from single atom dynamics and the catalytic effect of low coordination surface sites.  The new insights have important implications for applications of nanoparticles in chemical process technologies including for transportation fuels and emission control.

 

References


1. P.L. Gai, et al: Science 267 (1995) 661.
2. E.D. Boyes and P.L. Gai, Ultramicroscopy  67 (1997)219.
3. P.L. Gai and E.D. Boyes, Microscopy Research and Tech. 72 (2009) 153.
4. E.D. Boyes, M. Ward, L. Lari and P.L. Gai, Ann. Phys. (Berlin) 525 (2013) 423.
5. P.L. Gai, L. Lari, M. Ward and E.D. Boyes, Chemical Physics Letters, 592 (2014) 355.
6. E.D. Boyes and P.L. Gai, Comptes Rendus Physique, 15 (2014) 200.
7. P.L. Gai, K. Yoshida, M R Ward, M Walsh, E D Boyes, et al : Catal. Sc. Tech.  2015:  DOI: 10.1039/c5cy01154j
8.Email :  pratibha.gai@york.ac.uk  


Acknowledgements


We thank the EPSRC (UK) for the strategic critical mass research grant EP/J018058/1.


Pratibha GAI (YORK, United Kingdom), Kenta YOSHIDA, Michael WARD, Edward BOYES
11:45 - 12:00 #5360 - IM02-OP056 Aberration corrected environmental STEM (AC ESTEM) for atom-by-atom analysis of nanoparticle catalyst activation and deactivation mechanisms.
Aberration corrected environmental STEM (AC ESTEM) for atom-by-atom analysis of nanoparticle catalyst activation and deactivation mechanisms.

The core design for the modern ETEM (1, 2), of which there are now some 20 replicates worldwide, has been modified to support full ESTEM functionality and to be compatible with a different basic instrument, in this case the JEOL 2200, with a series of differentially pumped column sections separated by fixed beamline apertures reconfigured for purpose in size and position.  Single atom resolved HAADF imaging and full analytical functionalities, including wide angle electron diffraction, CBDP, EDX and EELS, are enabled under controlled chemical reaction conditions of high temperatures in a continuously flowing gas atmosphere around the supported nanoparticle catalysts samples while retaining sub-Angstrom resolution and single atom sensitivity for atom-by-atom analysis of critical processes.  The novel AC ESTEM machine at York provides new insights into the processes of metal nanoparticle catalyst activation, operational state and deactivation (3) which have economic and other societal importance, including for scientifically informed environmental management.   At typical 2-20Pa gas pressures the gas supply covers the sample surface with multiple 1000s of monolayers of gas per second and generally fully adequate to continuously flood the surface with gas molecules.  They drive the chemistry under conditions defined in surface science as 'high pressure' (4) and minimise e-beam driven artefacts.  Catalysis is a massive industry with highly leveraged investments in processes and plants.  However, in many applications, including automotive emission controls (5), it is still relatively inefficient compared to what might be possible with a better informed knowledge base generating strategies to restrain deactivation processes.   The unique to York AC ESTEM supports quantitative atom-by-atom analysis of the underlying mechanisms of Ostwald Ripening (OR) through atom detachment, migration and re-attachment at lower temperatures around constant particle centres of gravity (6,).  This is compared with (and sometimes mixed with) higher temperature modes of particle migration and coalscence (PMC), with local nanostructure attributes in the round influencing local outcomes.  Neither process is found to be sensitive to gas pressure at 2-20Pa levels.   Both mechanisms have now been studied with new levels of precision using the novel capabilities at York; leading to a better informed understanding of the technical problems and options and helping to specify the enabling developments needed going forward.

References: 
1. E D Boyes and P L Gai, Ultramicroscopy, 67 (1997) 219
2. P L Gai et al, MRS Bulletin, 32 (2007) 1044
3. E D Boyes, M R Ward, L Lari and P L Gai, Ann Phys, 525 (2013) 423
4. G Somorjai et al, Phys Chem Chem Phys, 9 (2007) 3500
5. M R Ward et al Chem Cat Chem, 4 (2012) 1622
6. T E Martin et al Chem Cat Chem. 7 (2015) 3705

Acknowledgement
The EPSRC (UK) is supporting the AC ESTEM development and applications at York under strategic research grant EP/J018058/1 




Edward BOYES (York, United Kingdom), Michael WARD, Thomas MARTIN, Leonardo LARI, Robert MITCHELL, Alec LAGROW, David LLOYD, Ian WRIGHT, Pratibha GAI
12:00 - 12:15 #5825 - IM02-OP059 In-situ observations of nanoparticles of carbon supported copper electrocatalyst during electrochemical cycling.
In-situ observations of nanoparticles of carbon supported copper electrocatalyst during electrochemical cycling.

Microwave assisted synthesis of metallic nanoparticles is an attractive way for the elaboration of electrocatalysts using energy efficient processes. This method consists in the use of a weak reducing agent that acts as solvent with high boiling point at the same time. Among the possible solvents, diethylene glycol is one of the most suitable molecules for microwave absorption and heating. Since microwave energy leads to a more uniform heat-treatment than a conventional heating process, the overall activation energy for metal ion reduction decreases under microwave exposure. The carbon supported copper catalyst described herein is a good candidate for electrocatalytic processes due to the fact that copper is an abundant and effective transition metal for a number of reactions.

Observations were conducted in a Tecnai G2 fitted with a FEG, an EDX spectrometer and GIF Quantum. STEM-HAADF was the primary technique of image recording. Scan speed was kept high in order to follow the kinetic of the evolution of the system. In this experiment, we use a sealed TEM cell recently developed by Protochips , i.e. liquid/bias TEM specimen holder (Poseidon 510). This system permits to study materials under electrochemical environment in TEM instrument. The sample (Copper nanoparticles on carbon) that is inside the sealed TEM cell (liquid gap is from 500 nm to 3000 nm) is immersed in the liquid electrolyte introduced by micro-fluidic system (here aqueous electrolyte KCl/H2O at 0.01ML) and then electrochemically cycled using designed working electrode (glassy carbon) on transparent SixN1-x windows. For electrochemical measurement, the applied currents were between 100 nA and 500 nA. Voltammogram was taken to ensure the correct oxidation and reduction of the copper atoms during a cycle. A strong corrosion of the supporting carbon is then observed. Experiments at constant current (chronopotentiometry) show the coalescence of large Cu grains and their disappearance depending on the applied current (See figure 1 and 2). Gas bubble formation is also observed (Figure 3). In these specific liquid experiments, optimized conditions remain to be found for TEM observation and in-situ cycling, especially for electrocatalysis which is particularly demanding in terms of control of the experimental condition.

 

 


Jerome PACAUD (Chasseneuil), Arnaud DEMORTIERE, Walid DACHRAOUI, Niat Ege SAHIN, Aurelien HABRIOUX, Clément COMMINGES, Tekko NAPPORN, Boniface KOKOH, Stephane AGUY
12:15 - 12:30 #6539 - IM02-OP070 The Dynamics of Active Metal Catalysts Revealed by In-Situ Electron Microscopy.
The Dynamics of Active Metal Catalysts Revealed by In-Situ Electron Microscopy.

Conventional high-resolution imaging by electron microscopy plays an important role in the structural and compositional analysis of catalysts. However, since the observations are generally performed under vacuum and close to room temperature, the obtained atomistic details describe an equilibrium state that is of limited value when the active state of a catalyst is in the focus of the investigation. Since the early attempts of Ruska in 1942 [1], in situ microscopy has demonstrated its potential and, with the recent availability of commercial tools and instruments, led to a shift of the focus from ultimate spatial resolution towards observation of relevant dynamics. [2]

During the last couple of years we have implemented commercially available sample holders for in situ studies of catalysts in their reactive state inside a transmission electron microscope. In order to relate local processes that occur on the nanometer scale with collective processes that involve fast movement of a large number of atoms, we have furthermore adapted a commercial environmental scanning electron microscope (ESEM) for the investigation of surface dynamics on active catalysts. Using these two instruments, we are now able to cover a pressure range from 10-4 to 103 mbar and a spatial resolution ranging from the mm to the sub-nm scale by in situ electron microscopy.

Presently we are investigating the behavior of metal catalysts during hydrocarbon partial oxidation and decomposition reactions as well as structural dynamics during oscillatory red-ox reactions.
The observations are performed in real-time and under conditions in which the active state of the catalyst can be monitored by on-line mass spectroscopy. The latter is of upmost importance, since the key requirement is to observe relevant processes and dynamics that are related to catalytic function.

The ability to directly image the active catalyst and associated morphological changes at high spatial resolution enables us to refine the interpretation of spatially averaged spectroscopic data that was obtained under otherwise similar reaction conditions, for example during near-ambient-pressure in situ XPS measurements. [3]

It will be shown that the ability of observing the adaption of an active surface to changes in the chemical potential of the surrounding gas phase in real-time potentially offers new and direct ways of optimizing catalysts and applied reaction conditions. One of the examples that will be demonstrated is the dynamic state of copper, where the simultaneous and very dynamic formation of oxidized and reduced islands is observed during red-ox conditions in different atmospheres and on different length scales (Figure 1). Direct observation of active catalysts, such as shown in this contribution, will have a big impact on our understanding of their function. It is already clear that some of the assumptions that were published in the catalysis literature on the basis of TEM observations made in vacuum, have to be revised.

 

References:

[1]   E. Ruska, Kolloid-Zeitschrift, 1942, 100, 2, 212-219

[2]   S. B. Vendelbo, et al., Nat. Mater. 2014, 13, 884–890

[3]   R. Blume, et al., PhysChemChemPhys, 2014, 16, 25989


Jing CAO, Ramzi FARRA, Zhu-Jun WANG, Ali RINALDI, Robert SCHLÖGL, Marc Georg WILLINGER (Berlin, Germany)
Amphithéâtre

"Tuesday 30 August"

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MS6-I
10:15 - 12:30

MS6 : Oxide-based, Magnetic and other Functional materials
SLOT I

Chairpersons: Etienne SNOECK (Chairperson, CEMES, Toulouse, France), Maria VARELA (Chairperson, Madrid, Spain)
10:15 - 10:45 #8639 - MS06-S80 Recent applications of high energy and spatial resolution STEM-EELS to energy harvesting materials.
Recent applications of high energy and spatial resolution STEM-EELS to energy harvesting materials.

A new generation of electron beam monochromators has recently pushed the energy resolution of (scanning) transmission electron microscopes deep into the sub 20meV range [1]. In addition to the obvious increase in resolution which has made exploring the phonon region of the EELS spectrum possible [1], the increased flexibility of these instruments is proving hugely advantageous for materials science investigations. The energy resolution, beam current and electron optics can be adjusted seamlessly and traded off each other as necessary within a greatly increased range, as will be illustrated on a number of systems studied using a Nion UltraSTEM100MC ‘Hermes’ instrument recently installed at the SuperSTEM Laboratory.

This added flexibility was essential in particular in studying the crystal structure of Li- and Mn-rich transition metal oxides, whose pristine state is not yet fully understood in spite of their great potential as high-capacity cathode materials for Li-ion batteries. Only through complementary electron microscopy and spectroscopy techniques at multi-length scale could the structural make-up of Li1.2(Ni0.13Mn0.54Co0.13)O2 crystals be described unambiguously. Systematically observing the entire primary particles along multiple zone axes (Fig. 1) reveals that they are consistently made up of a single phase, save for rare localized defects and a thin surface layer on certain crystallographic facets. More specifically, this careful STEM and EELS study at the atomic scale using revealed that the bulk of the oxides consists of randomly stacked domains that correspond to three variants of monoclinic structure. Crucially, it is also shown that only the very surface is composed of a different Co- and/or Ni-rich spinel with antisite defects [2].

Similarly, atomically-resolved monochromated EELS mapping and imaging were used to study the structure and chemistry of promising complex oxide thermoelectrics such as misfit layered cobaltates [3] or Ca-stabilized A-site deficient titanates [4]. For the latter, careful inspection of images and atomically resolved EELS chemical maps in two orthogonal directions suggests that in the Nd0.6Ca0.10.3TiO3 system, Ca predominantly occupies Nd vacancy shared sites, creating locally a higher occupation of the site and thus promotes short range vacancy-cation ordering in both a and b lattice directions. This in turn results in intricately modulated octahedral tilting distortions of the O sublattice, whose signature can be fingerprinted at the atomic scale through the near-edge fine structure of the Ti (and O) electron energy loss edges [5].

[1] O.L. Krivanek et al., Phil. Trans. Roy. Soc. 367 (2009), pp. 3683-3697; T.Miyata et al., Microscopy 5 (2014), pp. 377-382 ; O.L. Krivanek et al., Nature 514 (2014), pp. 209-212.

[2] A.K. Shukla, Q.M. Ramasse, C. Ophus, H. Duncan, F. Hage and G. Chen, Nature Communications 6 (2015), 8711.

[3] J.D. Baran, M. Molinari, N. Kulwongwit, F. Azough, R. Freer, D. Kepapstoglou, Q.M. Ramasse and S.C. Parker, J. Phys. Chem. C 119 (2015), pp. 21818-21827.

[4] F. Azough, D. Kepaptsoglou, Q.M. Ramasse, B. Schaffer and R. Freer, Chemistry of Materials 27 (2015), pp. 497-507.

[5] The SuperSTEM Laboratory is the U.K. National Facility for Aberration-Corrected STEM, supported by the Engineering and Physical Sciences Research Council (EPSRC). 


Quentin RAMASSE (Warrington, United Kingdom), Alpesh SHUKLA, Fredrik HAGE, Demie KEPAPTSOGLOU, Feridoon AZOUGH, Robert FREER
Invited
10:45 - 11:00 #6083 - MS06-OP285 Tracking Atoms, Vacancies and Electrons via Aberration-corrected Microscopy and First-Principles Theory.
Tracking Atoms, Vacancies and Electrons via Aberration-corrected Microscopy and First-Principles Theory.

The aberration-corrected scanning transmission electron microscope (STEM) can provide real space imaging and spectroscopy at atomic resolution with a new level of sensitivity to structure, bonding, elemental valence and even spin state [1]. Coupled with first-principles theory, this represents an unprecedented opportunity to probe the functionality of complex nanoscale systems. Two case studies will be presented utilizing the Nion UltraSTEM: first, determining the origin of the unexpected ferromagnetism in ultrathin, insulating LaCoO3-x (LCO) films, which is induced by the spontaneous ordering of oxygen vacancies to relieve misfit strain (see Fig. 1) [2]. Second, the origin of the colossal ionic conductivity in Y-stabilized ZrO2/SrTiO3 superlattices [3], which is due to spontaneous disordering of the oxygen sublattice in response to biaxial strain coupled with the incompatibility of the  oxygen sublattices at the interfaces (see Fig. 2) [4-6].

A JEOL ARM 200F has recently been installed in the National University of Singapore, equipped with UHR pole piece, ASCOR hexapole aberration corrector, Gatan Quantum ER and OneView camera and Oxford Aztec EDS system. It is installed within a JEOL isolated room with thermal radiation panels, vibration and magnetic field isolation systems. Fig. 3 shows a Ronchigram at 200 kV with near 70 mrad half angle flat phase region, and initial results from Si [110] show good splitting of the dumbbells with information transfer to sub-Angstrom levels, see Fig. 4. Results on oxides will be presented at the meeting [7].

  1. J. Gazquez, et al., Nano Lett, 11, 973 (2011).
  2. N. Biškup, et al., Phys. Rev. Lett. 112, 087202 (2014).
  3. J. Garcia-Barriocanal et al., Science 321, 676 (2008).
  4. T. J. Pennycook et al., Phys. Rev. Lett., 104, 115901 (2010).
  5. T. J. Pennycook et al., Eur. Phys. J. Appl. Phys. 54, 33507 (2011).
  6. Y. Y. Zhang et al., Adv. Mater. Interfaces 1500344 (2015).
  7. S. J. Pennycook, et al., ACS Nano, 9, 9437–9440 (2015).

Acknowledgements:

DOE BES Materials Science and Engineering Division, European Research Council Starting Investigator Award STEMOX # 239739, Fundación BBVA, DOE Grant No. DE-FG02- 09ER46554, National University of Singapore and JEOL Asia.


Stephen PENNYCOOK (Singapore, Singapore), Maria VARELA, Jaume GAZQUEZ, Nevan BIŠKUP, Juan SALAFRANCA, Timothy PENNYCOOK, Yuyang ZHANG, Haijun WU, Tian FENG, Nagahata MASAHITO, Sokrates PANTELIDES, Thirumalai VENKATESAN
11:00 - 11:15 #4806 - MS06-OP278 Nanoscale Ordering in Oxygen Deficient Quintuple Perovskite Sm2 εBa3+εFe5O15-δ revealed by TEM.
Nanoscale Ordering in Oxygen Deficient Quintuple Perovskite Sm2 εBa3+εFe5O15-δ revealed by TEM.

The introduction of two sorts of cations with different valence and size, such as Ba2+ or Sr2+ and Ln3+, in the A-sites of transition metal perovskite oxides has generated numerous remarkable properties such as high Tc superconductivity,  oxygen storage in cobalt based oxides for the realization of solid oxide fuel cell (SOFC) cathodes , CMR in manganates .

The investigation of the system Sm-Ba-Fe-O in air has allowed an oxygen deficient perovskite Sm2-εBa3+εFe5O15-δ (δ=0.75, ε=0.125) to be synthesized. In contrast to the XRPD pattern which gives a cubic symmetry (ap= 3.934Å), the ED patterns of this phase (Fig.1a) show superstructure spots corresponding to c=5ap”. HRTEM study (Fig1b) revealed that this phase is nanoscale ordered with a quintuple tetragonal cell, “ap ´ ap ´ 5ap”. Bearing in mind that one cubic cell corresponds to the formula Sm0.375Ba0.625FeO2.85, these tetragonal nanostructures can be formulated as Sm2-εBa3+εFe5O15-δ (δ~0.75, ε~0.125). They consist of 5 SmO/BaO layers stacked alternately with 5 FeO2 layers along c. The HAADF-STEM image (Fig.1c) of the Sm2-εBa3+εFe5O15-δ structure along the [100] is clearly established from the contrast segregation that the Ba2+ and Sm3+ cations are ordered in (001) layers along the c-axis. One observes rows of bright dots perpendicular to c, which corresponds to three sorts of Sm or Ba cationic layers, judging from their intensity: pure Sm, mixed Ba/Sm and pure Ba layers. Thus the HAADF-STEM image can be interpreted by the following periodic stacking sequence of the A cationic layers along the c axis: “Sm-Ba-Sm/Ba-Sm/Ba-Ba-Sm”.

It appears from the ABF-STEM images along [100] (Fig.1d) and [110] orientations (Fig.1e) of a single Sm2‑εBa3+εFe5O15-δ domain, that the oxygen positions in all the layers are close to the ideal octahedral positions. However, a closer inspection of the images reveals that the oxygen columns in the equatorial positions close to the Sm layer deviate from their ideal octahedral position, and lie closer to the Sm3+ cations yielding a “zigzag” contrast along [100] and [110].

The “Sm-Ba-Sm/Ba-Sm/Ba-Ba-Sm” chemical ordering is also confirmed by elemental EELS mapping (Fig.2a,b). The spatially resolved EELS data show that the O-K edge spectra corresponding to the “FeO2” planes (labeled A,B,C) exhibit different intensity ratios of the two pre-peaks to the O-K edge, prepeak1/ prepeak2 at approximately 529/531 eV, depending on the nature of the surrounding “Sm,Ba” layers (Fig.2c). The O-K fine structure in the Sm plane is very similar to that of plane A, whereas those of the Ba and Ba/Sm planes are similar to B and C planes respectively. A first observation is that pre-peak 1 at ~529 eV is less intense for oxygen anions close to Sm cations (SmO layers as well as A layers). According to the literature, the height of this pre-peak is generally rather independent of the rare earth element and should be around the same height as pre-peak 2. Pre-peak 2, related to Fe3d eg – O2p hybridized states seems invariant in the structure, apart from the c plane where it is slightly subdued, accompanied by an increase of pre-peak 1 below 530eV. Pre-peak 1 can be attributed to a charge transfer from the eg to the t2g band of Fe (the eg band is usually empty for Fe3+). This increase of pre-peak 1 related to Fe3d t2g – O2p hybridized states is also visible in the Ba/Sm mixed layers, and can be linked to the presence of oxygen vacancies in those planes. This peak is stronger in the C plane suggesting the presence of more vacancies in this plane.The spatially resolved EELS spectra of the Fe-L2,3 edge are plotted in Fig. 2c. The Fe L3 and L2 “white lines” arise from transitions of 2p3/2 → 3d3/23d5/2 (L3) and 2p1/2 → 3d3/2 (L2) and are known to be sensitive to valency and coordination. Our data shows that the A and B FeO2 planes exhibit very similar Fe-L2,3 edges, with an L3 peak maximum at 709.5 eV, and a pre-peak to L3, even if faint at 708 eV. The energy position of the L3 maximum, together with the shape and positions of the L3 and L2 are then indicative of Fe3+ in an octahedral coordination. All the acquired Fe L3 edges are significantly broadened with respect to the plotted references for 6-fold, 5-fold and 4-fold coordinated Fe3+. This broadening can be explained by a change in coordination of the Fe atoms. Bearing in mind that the measured oxygen stoichiometry is 14.25, instead of 15, this suggests that the iron coordination is mainly 6, i.e. octahedral, but may also be mixed with the presence of some FeO5 pyramids in those layers.

The nanoscale ordering of this perovskite explains its peculiar magnetic properties on the basis of antiferromagnetic interactions with spin blockade at the boundary between the nanodomains. The variation of electrical conductivity and oxygen content of this oxide versus temperature suggest potential SOFC applications.


Oleg LEBEDEV (Caen), Stuart TURNER, Vladimir CHEREPANOV, Bernard RAVEAU
11:15 - 11:30 #6257 - MS06-OP289 Monochromated STEM-EELS Analysis of Interface-Induced Polarization in LaCrO3-SrTiO3 Superlattices.
Monochromated STEM-EELS Analysis of Interface-Induced Polarization in LaCrO3-SrTiO3 Superlattices.

Emergent phenomena at complex oxide interfaces continue to attract attention as the basis for a variety of next-generation devices, including photovoltaics and spintronics. Tremendous progress has been made toward understanding the role of interfacial defects, cation intermixing, and film stoichiometry in single heterojunction systems; however, the techniques commonly used to study these interfaces, such as X-ray photoelectron and absorption spectroscopies, are either sensitive only to near-surface regions or do not offer depth resolution to probe individual interfaces. Here we explore the induced polarization in superlattices of LaCrO3 (LCO) and SrTiO3 (STO) using a combination of aberration-corrected scanning transmission electron microscopy (STEM) and monochromated electron energy loss spectroscopy (STEM-EELS). We show that a correlative approach, utilizing an array of local and non-local probes, is necessary to fully understand the defect-mediated origin of the induced polarization in this system.

 

We have conducted detailed structural characterization of several LCO-STO superlattices, as shown in Figure 1. We employ high-angle annular dark field imaging (STEM-HAADF) to directly measure the induced ferroelectric polarization in the STO layers. We first acquire a relatively high-speed time series of multiple fast frames (0.4 µs px-1), which are then aligned using both rigid and non-rigid registration to remove both sample drift and scan distortion [1]. Using this procedure we directly measure the induced polarization with picometer precision, as we have demonstrated elsewhere [2]. Our results reveal that the built-in asymmetric potential across the LCO / STO interfaces is sufficient to induce a sizable polarization, on the order of 40-70 µC cm-2, in good agreement with ab initio calculations [3].

 

We next perform detailed characterization of chemical intermixing and local electronic fine structure changes to explore how defects affect the induced polarization. Figure 2 shows the result of monochromated EELS measurements of the Ti L23 edge fine structure, overlaid onto the integrated Ti L23 edge signal. An improved energy resolution of better than 0.120 eV allows us to observe significant Ti intermixing through the superlattice, as well as subtle fine structure changes in the vicinity of the LCO layers not apparent in earlier data. Mapping the Ti L3 t2geg crystal field splitting across the film, we find evidence consistent with a slight reduction in Ti valence from 4+ to 3+ in the vicinity of the LCO layers, possibly the consequence of La3+ substitution for Sr2+ or oxygen vacancies. Measurements of the Ti L3 t2g / eg ratio also point toward such a trend: moving from the STO toward the LCO layers the ratio begins to decrease within the intermixed region, indicating a redistribution of electrons from t2g to eg states, suggesting a reduction in valence. In light of these results, our experimental STEM-HAADF measurements and accompanying ab initio calculations indicate that the induced polarization is robust against even sizable chemical intermixing and defect formation.

References

[1] Jones, L. et al, “Smart Align – a new tool for robust non-rigid registration of scanning microscope data”, Advanced Structural & Chemical Imaging 1:8 (2015).

[2] Spurgeon, S. R. et al, “Polarization screening-induced magnetic phase gradients at complex oxide interfaces.” Nat. Commun. 6, 1–11 (2015).

[3] Comes, R.B. et al, “Interface-induced Polarization in SrTiO3-LaCrO3 Superlattices.” Adv. Mater. Int. (2016). DOI: 10.1002/admi.201500779


Steven SPURGEON, Despoina KEPAPTSOGLOU (Daresbury, United Kingdom), Lewys JONES, Ryan COMES, Quentin RAMASSE, Phuong-Vu ONG, Peter SUSHKO, Scott CHAMBERS
11:30 - 11:45 #6783 - MS06-OP293 Mapping cation-vacancy ordering and oxygen octahedral distortions in A-site deficient perovskites by monochromated core-loss EELS.
Mapping cation-vacancy ordering and oxygen octahedral distortions in A-site deficient perovskites by monochromated core-loss EELS.

A–site defficient perovskites are of particular interest for a range of engineering applications, such as ionic conductors, batteries and thermoelectric materials. The attraction of these systems lies in particular in their chemically stability over a wide range of compositions and operating conditions. Moreover, they can exhibit different degrees structural ordering, such as cation-vacancy or oxygen-octahedral-tilt-domain ordering [1,2] which can significantly affect their macroscopic physical properties.

In this work we combine state-of-the-art monochromated core loss electron energy loss spectroscopy (EELS) measurements with advanced image analysis to investigate the interplay between A-site cation-vacancy ordering and oxygen octahedral tilting domains in a series of Nd2/3xTiO3 double perovskites, exhibiting different degrees of structural ordering as a function of their heat treatment. [3,4] As a result they exhibit vastly different thermoelectric properties related to the presence of domain boundaries which  can suppress the thermal conductivity due to increased phonon scattering. [5,6]

 High-angle annular-dark-field (HAADF) imaging and large scale atomically-resolved EELS maps were used to investigate the chemical ordering of cations on the so-called A site of the perovskite structure (Figure 1), while pm-precision annular bright field (ABF) imaging of these compounds reveals the presence of TiO6 tilting domains, which we show can be correlated with variations in the A-site occupancy (Figure 2).   Furthermore, advanced image analysis of the electron micrographs was used to measure local distortions in the TiO6 lattice

These local distortions are further investigated using atomically-resolved monochromated EELS measurements with an energy resolution better than 0.1eV, in a Nion UltraSTEM 100MC. In particular, measurements of the of the Ti L2,3 edge (Figure 3), reveal local changes of the near-edge fine structure, usually not discernible with conventional EELS measurements. Changes in the Ti L2,3 pre-peak intensity, as well as subtle local variations in the Ti L3 eg/tg intensity ratios, clearly observable thanks the relatively high beam current still available at this energy resolution, are indicative of local distortions in the oxygen octahedral sublattice.

References

[1] D.M. Smyth, Annu. Rev. Mater. Sci. 15, 329 (1985).

[2] M. Labeau, I.E. Grey, J.C. Joubert, H. Vincent, and M.A. Alario-Franco, Acta Crystallogr. Sect. A 38, 753 (1982).

[3] S. Jackson, et al, J. Electron. Mater. 43 (2014) p.2331.

[4] F. Azough, et al, Chem. Mater 27 (2015) p.497.

[5] K. Koumoto, et al, Annu. Rev. Mater. Res. 40 (2010) p.363.

[6] D.J. Voneshen, et a,l Nat Mater 12 (2013) p.1028.

[7] SuperSTEM is the U.K’s national facility for Aberration Corrected STEM funded by EPSRC.  


Demie KEPAPTSOGLOU (Daresbury, United Kingdom), David HERNANDEZ-MALDONADO, Feridoon AZOUGH, Colin OPHUS, Robert FREER, Quentin RAMASSE
11:45 - 12:00 #5344 - MS06-OP280 Determining the structure/property relation at oxide interfaces by means of advanced TEM spectroscopy and imaging.
Determining the structure/property relation at oxide interfaces by means of advanced TEM spectroscopy and imaging.

The study of novel physical properties appearing when two materials are interfaced has become one of the major fields of research in solid state physics over the last decade. For example, in the strive for novel non-silicon based electronics, the discovery of the formation of a conductive layer right at the interface region between 2 insulators (for example LaAlO3 and SrTiO3); a so-called two-dimensional electron gas (2DEG) or two dimensional electron liquid appears. Another important example of such emergent phenomena is the appearance of interface magnetism or superconductivity. As the materials involved in those new physical phenomena are often complex oxides, many factors such as strain, oxygen stoichiometry, cation intermixing, oxygen octahedral coupling.…[1,2] have to be considered when discussing their origin. The exact understanding of those phenomena is a key factor in order to turn these research ideas into working devices and in order to search for the most optimal materials.

In parallel, advances in electron microscopy instrumentation and techniques such as the introduction of aberration-correctors of the probe-forming lens have made it possible to achieve sub-angstrom spatial resolution allowing the study of materials on an atom column by atom column basis. High Angle Annular Dark Field (HAADF) combined with Annular Bright Field (ABF) imaging have made it possible to study and understand respectively the cationic and the oxygen sub-lattices in these materials.

As a first example, in the case of a (La,Sr)MnO3 (LSMO) film grown on a NdGaO3 (NGO) substrate, the magnetic easy axis of the LSMO film can be reversed by adding a SrTiO3 (STO) buffer layer between the substrate and the film. Using the statistical analysis of STEM ABF images, we could reveal that even one single STO layer is enough to remove the transferred octahedral tilt of NGO into the LSMO film reversing its magnetic easy axis from the a to the b axis(see ref 1 and figure 1).

In a second part, The appearance of superconductivity in a superlattice of (Sr,Ca)CuO2 (SCCO) and BaCuO2 (BCO) will be investigated. Comparing two different heterostructures where 8 layers of SCCO are sandwiched with STO (no superconductivity) and BCO (superconductivity) the effect of the structure of the different layers (orientation of the CuO2 in the form of planes or chains) on the appearance of superconductivity will be presented.

[1] Z. Liao, M. Huijben, Z. Zhong, N. Gauquelin, S. Macke, R. Green, S. van Aert, J. Verbeeck, G. Van Tendeloo, K. Held, G. A. Sawatzky, G. Koster & G. Rijnders, Nat. Mater. 15 (2016), p.425-431

[2] N. Gauquelin, E. Benckiser, M.K. Kinyanjui, M. Wu, Y. Lu, G. Christiani, G. Logvenov, H. –U. Habermeier, U. Kaiser, B. Keimer & G.A. Botton, Physical Review B 90 (2014), article 195140

 

J.V., G.V.T. and S.V.A. acknowledge funding from FWO projects G.0044.13N and G.0368.15N.  N.G. and J.V. acknowledge funding from the European Research Council under the 7th Framework Program (FP7), ERC Starting Grant 278510 VORTEX. All authors acknowledge financial support from the European Union under the Seventh Framework Program under a contract for an Integrated Infrastructure Initiative (Reference No. 312483-ESTEEM2).


Nicolas GAUQUELIN (Antwerpen, Belgium), Sandra VAN AERT, Johann VERBEECK, Gustaff VAN TENDELOO
12:00 - 12:15 #5052 - MS06-OP279 Point defect driven ferromagnetism in YBa2Cu3O7-x superconductor.
Point defect driven ferromagnetism in YBa2Cu3O7-x superconductor.

Although defects may be seen as detrimental, they play essential roles in many materials. In some complex oxides for instance, they present an opportunity to enhance particular properties, or even engineer new ones. An archetypal example is the high-Tc superconductor YBa2Cu3O7−δ (YBCO), where defects are indispensable to immobilize quantized vortices in the presence of magnetic fields. Therefore, determining the atomic structure of defects is critical to unravel and control their effect on the physical properties. In this talk, we will do precisely that with an unforeseen complex point-defect that leads to an unexpected formation of ferromagnetic clusters embedded within a superconductor. The commonest YBCO defect comprises the doubling of Cu-O chains between Ba-O planes, a ubiquitous intergrowth regardless of the deposition technique. Here, we will unclothe the true nature of this defect using a combination of experiments and theory to provide a complete picture of the structure and chemistry of these intergrowths at the atomic-scale and their effect on the electronic and magnetic properties of YBCO. First, we will show, by means of scanning transmission electron microscopy (STEM), how the system solves the local off-stoichiometry induced by the extra Cu-O chain, removing half of the Cu atoms in selected chains, and the distortions induced by the vacancies. Secondly, we will show using density functional theory (DFT) how the complex structure of these intergrowths affects the electronic properties, and yields a magnetization density that extends into the neighboring Cu-O planes. Finally, we will present X-ray magnetic circular dichroism (XMCD) spectroscopy results, which provide evidence of the theoretically predicted Cu magnetic moments and the presence of a dilute network of magnetic defects within the high-Tc superconducting state, see Figure 1. See for more details “Emerging dilute ferromagnetism in high-Tc superconductors driven by point defect clusters”, Adv. Sci. 2016, 1500295.


Jaume GAZQUEZ (Bellaterra, Spain), Roger GUZMAN, Rohan MISHRA, Elena BARTOLOME, Juan SALAFRANCA, Cesar MAGEN, Maria VARELA, Mariona COLL, Anna PALAU, S.m. VALVIDARES, Pierluigi GARGIANI, Eric PELLEGRIN, Javier HERRERO-MARTIN, S.j. PENNYCOOK, Teresa PUIG, Xavier OBRADORS
12:15 - 12:30 #5880 - MS06-OP281 Structural and Chemical Investigations of Superconducting Lanthanum Cuprate Bilayer Interfaces.
Structural and Chemical Investigations of Superconducting Lanthanum Cuprate Bilayer Interfaces.

Highly adaptable crystal structures of complex oxide materials enable changes in composition and provide the opportunity of fabricating them in different forms e.g., thin films and/or heterostructures. Complex oxide heterostructures show noteworthy electronic properties which are absent in bulk forms, and the phenomena occurring at their interfaces are intriguing. The interest attributed to these structures and interfaces is also related to the wide variety of the functionalities such as ferroelectricity, magnetism, superconductivity etc. [1]. One of the most exciting interface effects is high temperature interfacial superconductivity discovered in heterostructures consisting of non-superconducting layers of insulating La2CuO4 (LCO) and metallic La1.55Sr0.45CuO4 (LSCO). Moreover, cuprate bilayers are also attractive in which the critical temperature can be enhanced remarkably in comparison to single phase systems [2].

Atomic-layer-by-layer oxide molecular-beam epitaxy (ALL-oxide MBE) with its unique capabilities allowed us to synthesize bilayers consisting of 3 unit cells of metallic La1.6M0.4CuO4 layer and 3 unit cells of the undoped insulating (I) LCO layer neither of which is superconducting by its own, where M represents the dopant, namely Sr2+, Ca2+, and Ba2+ which have the same ionic charge but different ionic radii. The bilayers are superconducting with a critical temperature of ~17.0 K, ~37.0 K and ~38.5 K for Ca, Sr and Ba dopants, respectively.

For STEM investigations, a JEOL-ARM 200F STEM equipped with a cold field-emission electron source, a probe Cs corrector (DCOR, CEOS GmbH), a 100 mm2 JEOL Centurio SDD-type EDX detector, and a Gatan GIF Quantum ERS spectrometer was used. High-angle annular dark-field (HAADF) imaging and electron energy-loss spectroscopy (EELS) were performed at probe semi-convergence angles of 20 mrad and 28 mrad, respectively. Collection angles for HAADF and annular bright-field (ABF) images were 75-310 mrad and 11-24 mrad, respectively.

Atomically resolved ABF and HAADF images were simultaneously acquired. HAADF images unveil not only the perfect interfaces between substrate and the bilayers but also the high structural quality (Fig 1a-b). Atomic resolution EELS and energy-dispersive x-ray spectroscopy (EDXS) analyses were conducted to examine elemental distributions across the interfaces. EDXS analyses and EEL spectrum images (SI) reveal different cation redistribution behaviors and lengths depending on the cation size mismatch with respect to the La ionic radius. In Fig.1c the distribution of La and Sr across the interfaces of a Sr-doped bilayer sample is presented, which reveals relatively homogeneous distribution of Sr and also the redistribution of Sr near the interface.

Through ABF imaging, oxygen positions were determined, interatomic distortions (cation – cation and CuO6 octahedra) were measured and correlated with the dopant distributions obtained via chemical analyses. In Fig. 2a two of the quantitatively studied images (i.e. HAADF and ABF), are presented as an overlay and the arrows indicate the nominal interfaces. Figure 2b shows the measured interatomic distances which are indicated with arrows. Results for the different dopants will be presented and correlations with high-temperature interfacial superconductivity will be discussed [3].

 

References

[1] H. Y. Hwang et al., Nature Materials, 11 (2012) p.103.

[2] A. Gozar et al., Nature, 455 (2008) p.782.

[3] The research leading to these results has received funding from the European Union Seventh Framework Programme [FP7/2007-2013] under grant agreement n°312483 (ESTEEM2).


Y. Eren SUYOLCU (Stuttgart, Germany), Yi WANG, Wilfried SIGLE, Georg CRISTIANI, Gennady LOGVENOV, Peter A. VAN AKEN
Salle Bellecour 1,2,3

"Tuesday 30 August"

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MS2-I
10:15 - 12:30

MS2: 1D and 2D materials
SLOT I

Chairpersons: Raul ARENAL (Chairperson, Zaragoza, Spain), Ursel BANGERT (Chairperson, Limerick, Ireland)
10:15 - 10:45 #7884 - MS02-S69 Electrical properties of atomic carbon chains measured by in-situ TEM.
Electrical properties of atomic carbon chains measured by in-situ TEM.

Carbon in the sp1 hybridization (carbyne) is able to form atomic chains that constitute the elementary one-dimensional phase of carbon [1]. Despite many efforts, the synthesis of carbon chains in appreciable quantities remains difficult and even the existence of bulk carbyne is subject of an ongoing controversy. However, the existence of individual carbon chains is undisputed since they have been observed in in-situ TEM studies. The present work allowed, for the first time, to measure the electrical properties of carbon chains by using a dedicated specimen stage for establishing electrical contacts in the TEM.

Carbon chains are unusual conductors that may occur either as metallic cumulene with double bonds or as semiconducting polyyne with alternating single and triple bonds. Now, as it became possible to characterize them electrically, these two electronic configurations can be distinguished. A piezo-driven tip (Nanofactory), integrated into the specimen holder of a TEM, allowed to establish contacts to graphenic material and, by controlled retraction of the electrodes, to unravel chains of carbon atoms (fig. 1a). At the same time, the electrical properties could be measured [2, 3]. By recording current-voltage curves of individual carbon chains, both cumulene and polyyne were identified (fig. 1b). It was found experimentally and by quantum conductance calculations (fig. 1c) that transport through narrow resonant states makes the conductivity much lower than predicted in previous theoretical work. At high applied bias, however, a sudden rise in current occurs, showing the absence of conduction channels at lower energy and their presence at higher energy.

When the 1D system is under strain, the chains exhibit a semiconducting behavior, corresponding to polyyne. Conversely, when the chain is unstrained, an ohmic behavior, corresponding to cumulene, is observed (fig. 1b) [4]. This confirms a recent theoretical prediction, namely that the Peierls distortion, which would stabilize polyyne, is suppressed by zero-point vibrations in an unstrained chain so that cumulene is the stable configuration. In the presence of strain, however, polyyne is favoured by the Peierls instability. Thus, a metal-insulator transition can be induced by adjusting the strain. Furthermore, it is shown that these atomic chains can act as rectifying diodes when they are in a non-symmetric contact configuration, i.e., between a carbon and a metal contact or between two carbon contacts of different type.

  

Acknowledgements:

Financial support by the LABEX program "Nanostructures in Interaction with their Environment" (NIE) and different projects of the Agence Nationale de Recherche (ANR, France) is gratefully acknowledged.

 

 References:

1. F. Banhart, Beilstein J. Nanotech. 6, 559 (2015).

2. O. Cretu, A. R. Botello-Mendez, I. Janowska, C. Pham-Huu, J.-C. Charlier, F. Banhart, Nano Lett. 13, 3487 (2013).

3. A. La Torre, F. Ben Romdhane, W. Baaziz, I. Janowska, C. Pham-Huu, S. Begin-Colin, G. Pourroy, F. Banhart, Carbon 77, 906 (2014).

4. A. La Torre, A. Botello-Mendez, W. Baaziz, J.-C. Charlier, F. Banhart, Nature Comm. 6, 6636 (2015).


Florian BANHART (STRASBOURG CEDEX), Alessandro LA TORRE, Ferdaous BEN ROMDHANE, Ovidiu CRETU, Andrés BOTELLO-MENDEZ, Jean-Christophe CHARLIER
Invited
10:45 - 11:00 #4515 - MS02-OP217 Correlative Microscopy: Raman Imaging Meets AFM, SNOM, and SEM.
Correlative Microscopy: Raman Imaging Meets AFM, SNOM, and SEM.

The characterization of low-dimensional materials such as graphene or transition metal dichalogenides (TMDCs) often requires more than one technique to obtain a thorough understanding of their attributes for specific applications. Graphene and TMDCs both have layered structures and properties that vary significantly with thickness as compared to single layer conformations, making them very interesting for electronics design [1, 2]. Electronic device performance optimization can benefit greatly from knowledge of their crystalline structure and exciton dynamics. The aim of the following analysis is to show how several spectroscopy (Raman/Photoluminescence) and microscopy techniques (AFM/SEM) can, in correlation, provide a more detailed depiction of low-dimensional materials than the constituent measurements could offer in isolation.

 

Raman spectroscopy, and Raman imaging in particular, has proved to be of great value in differentiating spectra obtained from single, double and multi-layered low-dimensional materials. Raman imaging was also used to evaluate strain, doping, chirality and disorder in graphene and TMDCs [3, 4]. The information acquired with Raman spectroscopy and imaging can be complemented by data from highest resolution microscopy techniques such as Atomic Force Microscopy (AFM), Scanning Near-Field Microscopy (SNOM), or Scanning Electron Microscopy (SEM).

 

Fig. 1a shows a correlative Raman-SEM image of exfoliated graphene deposited on a non-conductive glass coverslip. The SEM image was acquired in the low vacuum mode using a BSE detector. Different graphene sheets can be clearly visualized. In the center of the SEM image a confocal Raman image was acquired, showing the presence of different number of graphene layers, from one (green) to ten (yellow). The high resolution confocal Raman image (Fig. 1b), acquired from the area marked in Fig. 1a shows the intensity distribution of the G band as a function of layers in the graphene sheet as indicated with 1, 2 and M (multy-) layers. By evaluating the intensity of the D-band, the chirality of the graphene crystal could be determined as highlighted in red color in Fig. 1b. The SNOM image from the same area (Fig. 1c) shows that the transparency of the graphene decreases with increase of number of layers providing direct access to the fine structure of graphene.

In a second example a high resolution SEM image of CVD grown MoS2 is pesented (Fig. 2a). The Raman-SEM image (RISE image)  presented in Fig. 2b shows a correlation of changes in the Raman spectrum at the defects of the crystals.

References:

[1] A. K. Geim , I. V. Grigorieva, Nature 499 (2013), p. 419.

[2] F. H. L. Koppens, T. Nueller, P. Avouris, A.C. Ferrari, M. S. Vitiello, M. Polini, M. Nat. Nano  9 (2014) p. 780.

[3] Y. You, Z. Ni, T.Yu, Z. Shen, Appl. Phys. Letters 39 (2008) p.13112.

[4]  P.K. Chow, R.J. Gedrim, J. Gao, T. M. Lu, B. Yu, H. Terrones, N. Koratka, ACS Nano (in press)


Ute SCHMIDT (Ulm, Germany), Maxime TCHAYA, Philippe AYASSE, Olaf HOLLRICHER
11:00 - 11:15 #5068 - MS02-OP218 Localized electrical resistance measurements of supported reduced graphene oxide using in-situ STM-TEM.
Localized electrical resistance measurements of supported reduced graphene oxide using in-situ STM-TEM.

The tunable electrical properties of reduced graphene oxide (RGO) make it an ideal candidate for many applications including energy storage.1 However, in order to utilize the material in industrially applied systems it is essential to understand the behavior of the material on the nanoscale, especially how naturally occurring phenomenon like wrinkling effects the electronic transport. While there have been many theoretical investigations on the transport behavior, there are much fewer experimental measurements.2, 3, 4 Here we used a transmission electron microscope (TEM) with scanning tunneling microscope (STM) probe in-situ holder is used to perform localized electrical measurements on wrinkled, supported RGO flakes. The RGO flakes are deposited onto pre-patterned Au electrodes on SiN membranes. The flakes are 1-3 layers thick and have lateral dimensions on the order of single micrometers. They are deposited through an ammonium laurate (AL) aqueous surfactant. The TEM allows for observation of the local wrinkling structure of the RGO and simultaneously a Nanofactory STM-TEM holder is used to perform localized resistance measurements. The holder allows for manipulation with and positioning of Au STM probes, with diameters less than 100 nm, with sub-nanometer precision. The results show that the overall resistance is low, on the order of single kΩ, if the contact between the probe and the RGO is optimized.  Wrinkles reduce the contact resistance between RGO and the probe. The overall trend for more than 70 measurements is that the total resistance decreases with increasing amount of wrinkles and that the contact resistance dominates the resistance when the probe makes contact with wrinkle free RGO. The sheet resistance and maximal contact resistance for our measurements range from 5-20 kΩ/☐ and 6-20E-7Ω cm2, respectively, which falls in line with other scanning probe measurements for graphene and metal contacts.5, 6  Here we use a bottom metal contact for the gold electrodes which eliminates the risk of resist contamination and metal doping of the graphene.7 These measurements give evidence that RGO with large amounts of wrinkling on a substrate can transport electrons well and that it is thus not necessary to produce suspended, pristine graphene in order to benefit from its electrical transport properties.

 

(1) Novoselov, K. S.; Fal'ko, V. I.; Colombo, L.; Gellert, P. R.; Schwab, M. G.; Kim, K. A roadmap for graphene. Nature 2012, 490, 192-200.

(2) Guinea, F.; Horovitz, B.; Le Doussal, P. Gauge fields, ripples and wrinkles in graphene layers. Solid State Communications 2009, 149, 1140-1143.

(3) Guo, Y.; Guo, W. Electronic and Field Emission Properties of Wrinkled Graphene. Journal of Physical Chemistry C 2013, 117, 692-696.

(4) Ladak, S.; Ball, J. M.; Moseley, D.; Eda, G.; Branford, W. R.; Chhowalla, M.; Anthopoulos, T. D.; Cohen, L. F. Observation of wrinkle induced potential drops in biased chemically derived graphene thin film networks. Carbon 2013, 64, 35-44.

(5) Yan, L.; Punckt, C.; Aksay, I. A.; Mertin, W.; Bacher, G. Local Voltage Drop in a Single Functionalized Graphene Sheet Characterized by Kelvin Probe Force Microscopy. Nano Letters 2011, 11, 3543-3549.

(6) Robinson, J. A.; LaBella, M.; Zhu, M.; Hollander, M.; Kasarda, R.; Hughes, Z.; Trumbull, K.; Cavalero, R.; Snyder, D. Contacting graphene. Applied Physics Letters 2011, 98.

(7) Babichev, A. V.; Gasumyants, V. E.; Egorov, A. Y.; Vitusevich, S.; Tchernycheva, M. Contact properties to CVD-graphene on GaAs substrates for optoelectronic applications. Nanotechnology 2014, 25.

 


Hanna NILSSON (Gothenburg, Sweden), Ludvig DE KNOOP, John CUMINGS, Eva OLSSON
11:15 - 11:30 #6189 - MS02-OP223 In-situ electrical measurements of Graphene Nanoribbons fabricated through Scanning Transmission Electron Microscopy.
In-situ electrical measurements of Graphene Nanoribbons fabricated through Scanning Transmission Electron Microscopy.

We recently demonstrated a controllable and reproducible method to obtain suspended monolayer graphene nanoribbons with atomically defined edge shape [1]. Our method exploits the electron-beam of a Scanning Transmission Electron Microscope (accelerated at 300 kV) to create vacancies in the lattice by knock-on damage and pattern graphene in any designed shape. The small beam spot size (0.1 nm) enables close-to-atomic cutting precision, while heating graphene at 900 K during the patterning process avoids formation of beam-induced Carbon deposition and allows self-repair of the graphene lattice.  Self-repair mechanism is essential to obtain well-defined (zig-zag or armchair) edge shape and, if the electron beam dose is lowered, to perform non-destructive imaging of the graphene nanoribbons.

Drawing the electron-beam path with a software script, we were able to obtain reproducible graphene nanoribbons with sub 10 nm width. Using an in-house built microscopy holder equipped with electrical feedthroughs, we performed 2 and 4 wire measurements on several graphene nanoribbons, with different number of layers. Wide nanoribbons (width> 50 nm) exhibited ohmic behaviour, with conductivity linearly proportional to the width. Narrower ribbons (10 nm < width < 50 nm) displayed non-linear current-voltage (IV) relationship at low temperature (4 K, ex-situ), possibly indicating the opening of a band gap. The narrowest ribbon was 1.5 nm wide, with strong non-linear IV also at room temperature.

Electrical measurements were also performed in the high temperature range (300 K – 900 K), from which we concluded that thermal generated carriers give the main contribution to  electrical conductivity above room temperature.

Ackwnoledgements: This work was supported by ERC funding,  project 267922 - NEMinTEM 

References

[1]        Q.Xu, M. Wu, G. F. Schneider, L. Houben, S.K. Malladi, C. Dekker, E. Yucelen, R.E. Dunin-Borkowski, and H.W. Zandbergen, ACS Nano  7 (2), 1566-1572, 2013


Leonardo VICARELLI (Delft, The Netherlands), Stephanie J. HEEREMA, Cees DEKKER, Henny ZANDBERGEN
11:30 - 11:45 #6684 - MS02-OP227 In situ cyclic telescoping of multi-walled carbon nanotubes.
In situ cyclic telescoping of multi-walled carbon nanotubes.

        In this work, we perform an in-depth study of the cyclic telescoping of multi-walled carbon nanotubes (MWCNTs) inside a transmission electron microscope. The nanotubes are observed in real time, while simultaneously measuring their electrical properties. To date, examples of in situ TEM nanotube telescoping have remained few in number due to the highly specialized equipment and technical expertise required.

        Experiments were conducted by first ‘sharpening’ a MWCNT by approaching it with a piezo-controlled tungsten tip and applying a voltage pulse. This results in controlled and localized peeling of the outer walls, giving rise to a telescope structure. The exposed core is then contacted with the tungsten tip and reproducibly pulled out then re-inserted, while measuring conductance behavior at each movement step. Figure 1 shows an example of in situ telescoping of a MWCNT in real time.

        Results demonstrate that an electrical current can be maintained for multiple in-and-out cycles (up to 11 cycles have been tested to date), and for telescoping distances of up to 650 nm. This is exemplified in Figure 2. The systems display complex conductance behavior, with of some MWCNT telescopes demonstrating improved conduction (and current) as a function of the number of cycles, while for most these properties diminish.

        Control experiments have been conducted to investigate the effect of the electron beam on the behavior of the MWCNTs, and have indicated that changes in conductance behavior are not strongly influenced by the imaging process under normal beam conditions.

        One potential application for these structures is use as flexible electrical contacts, which allow for relative motion of the two electrodes, while maintaining electrical conduction.

        The authors would like to acknowledge funding as provided by the National Institute for Materials Science (NIMS), through the International Center for Materials Nanoarchitectonics (MANA).


Katherine MOORE, Ovidiu CRETU (Tsukuba, Japan), Dmitri GOLBERG
11:45 - 12:00 #6706 - MS02-OP228 Ion implantation into two-dimensional materials for electronic tailoring – observing the behaviour of individual implanted atoms.
Ion implantation into two-dimensional materials for electronic tailoring – observing the behaviour of individual implanted atoms.

Controlled manipulation of materials on the atomic scale is a continuing challenge in physics and material science. Doping of two-dimensional (2D) materials via low energy ion implantation could open possibilities for fabrication of nanometre-scale patterned devices, as well as for functionalization compatible with large-scale integrated semiconductor technology. High resolution imaging and spectroscopic analysis of these electronic dopants at the atomic scale is fundamental for understanding sites, retention, bonding and resulting effects on Fermi level shifts. This has been made achievable with the advent of aberration corrected transmission electron microscopy (TEM) and scanning TEM, as well as low-loss electron energy loss spectroscopy (EELS).

 

We show for the first time directly that 2Ds can be doped via ion implantation. Retention is in good agreement with predictions from calculation-based literature values [1], as are initial results of the sites of dopants and their influence on the band structure of surrounding atoms. We present results of N- and B-implantation in graphene [2,3] as well as current progress with ion-implantation in TMDCs.

 

  1. Ahlgren, E. H.; Kotakovski, J.; Krasheninnikov, A. V. Phys. Rev. B, 2011, 83, 115424
  2. U. Bangert, W. Pierce D. M. Kepaptsoglou, Q. Ramasse, R. Zan, M. H. Gass, J. A. Van den Berg, C. B. Boothroyd, J. Amani and H. Hofsäss, Nano Letters, 2013, 13, 4902-4907
  3. Demie Kepaptsoglou, Trevor P. Hardcastle, Che R. Seabourne, Ursel Bangert, Recep Zan, Julian Alexander Amani, Hans Hofsaess, Rebecca J. Nicholls, Rik M. D. Brydson,  Andrew J. Scott, and Quentin M. Ramasse, A.C.S., 2015, 9, 11398–11407

Eoghan O'CONNELL (Limerick, Ireland), Beata KARDYNAL, Jhih-Sian TU, Florian WINKLER, Hans HOFSAESS, Demie KEPAPTSOGLOU, Quentin M. RAMASSE, Julian Alexander AMANI, Recep ZAN, Ursel BANGERT
12:00 - 12:15 #6717 - MS02-OP230 Effects of electron-beam-generated anion point defects on the long range order of charge density waves in 1T-TaSe2, 1T-TaS2.
Effects of electron-beam-generated anion point defects on the long range order of charge density waves in 1T-TaSe2, 1T-TaS2.

Charge density waves (CDW) are periodic modulations of charge density in low-dimensional metals observed as a function of temperature, doping and pressure. Due to electron-phonon coupling CDWs, are also accompanied by a periodic lattice distortion (PLD).1 Quasi two-dimensional (2D) transition metal dichalcogenides metals like 1T/2H-TaSe2, 1T/2H-TaS2, 2H-NbSe2 are some of the materials that exhibit strong CDW distortions. While CDW can be directly probed using Scanning Tunnelling Microscopy (STM), diffraction and imaging techniques such as High Resolution Transmission electron Microscopy (HRTEM) and selected area electron diffraction (SAED) are sensitive to the structural distortions (PLD) accompanying CDW. In an electric field, and in the absence of crystalline impurities and defects, sliding incommensurate CDW show transport properties similar to a superconducting state.1,2 It is therefore important to understand the effects of commensuration, defects, and impurities on the static and dynamic properties of the CDW state.2,3 On a transmission electron microscope (TEM), investigating the effects of  defects on the CDW/PLD state can be done in-situ by generating point defects through electron beam irradiation and at the same time monitoring the structure of the CDW/PLD through electron diffraction and atomic resolved HRTEM imaging. 

Here we report on the interaction of commensurate CDW/PLD with point defects generated by the electron beam in 1T-TaSe2 and 1T-TaS2. Due to the CDW/PLD, bulk 1T-TaS2 and 1T-TaSe2 are characterized by a commensurate √13 a×√13 a0 (a0= 3.447) superlattice at 180 K and 300 K respectively.Figure 1(a) displays a HRTEM image of 1T-TaSe2 obtained at 100 K. The HRTEM image was obtained at region consisting of upto 10-15 layers of 1T-TaSe2 and shows Ta atomic columns. The HRTEM image is also characterized by a bright, dark contrast modulation due to the PLD/CDW. A Fast Fourier Transform (FFT) of the HRTEM image shown in fig 1(b) has spots from the main structure (solid red circles) surrounded by six satellite spots (dotted circle) from the PLD/CDW. HRTEM image analysis involving masking of the satellite spots from the CDW/PLD with a circular mask, followed by inverse FFT helps to visualize the structure of the lattice arising from the commensurate PLD/CDW. The resulting image, shown in fig. 1(c), then displays an intensity image showing a √13 a×√13 a lattice of the CDW/PLD maxima.

To investigate the effects of electron-beam generated defects on the CDW/PLD, succesive HRTEM images  were obtained from the same sample region over time and at a constant electron dose. Images showing the evolution of PLD/CDW maxima with electron beam irradiation were then obtained from respective HRTEM images using the image analysis procedure elucidated above. Figures 1(d)-(f) show successive HRTEM images obtained over time. The HRTEM images were obtained from a region of upto 15 layers of 1T-TaSe2 and only show the Ta atomic columns. The PLD/CDW lattices shown in fig.1(g), 1(h), 1(i) correspond to the HRTEM images in figs. 1(d), 1(e), and 1(f) respectively. A radial distribution function (RDF) showing the nearest-neighbor and next-nearest-neighbor periodicities between the CDW maxima can also be calculated. The RDF in figs.1(j), 1(k), 1(l) have been calculated from the CDW/PLD lattices in figs. (g), (h), (i) respectively. The peak with the asterix shows the main periodicity due to the CDW/PLD wave-vector |qi =1…6| =  √13 a0. Loss of long-range order with increased exposure to the electron beam is characterized by broadening of RDF peaks (see regions marked with dotted rectangle in fig. 1(k) and fig.1 (l)). Based on the characterization of 1T-TaSe2, and 1T-TaS2 thin/single layers we show that this loss of long range order is due to interaction of CDW/PLD with S and Se anionic point defects generated by the electron beam.

References and acknowledgments:

1. J. Wilson, F. D. Salvo, and S. Mahajan, Adv. Phys. 24, 117 (1975).

2.H. Dai, and C. Lieber, J. Phys. Chem. 97, 2362 (1993)

3. H. Mutka, Phase Transitions 11, 221 (1988).


Michael KINYANJUI (Ulm, Germany), Pia BOERNER, Tibor LEHNERT, Janis KOSTER, Ute KAISER
12:15 - 12:30 #6908 - MS02-OP234 TEM Characterization of Indium Phosphide Nano-Flags Growth.
TEM Characterization of Indium Phosphide Nano-Flags Growth.

Quasi two-dimensional (2D) semiconductor materials are desirable for electronic, photonic, and energy conversion applications and have stimulated extensive research on their synthesis1-3 and applications4-6.  One such example is the growth of indium phosphide flag-like nanostructures (Fig. 1) by epitaxial growth on a nanowire template7. By the intentional incorporation of defects, control of the nano-flag location along the nanowire was achieved. Long InP nanowires with inherent high defect density in the top area of the flagpole, which pins the catalyst, resulted in top flag geometry (Fig. 1a). Intentional defect creation in the middle section of the flagpole produced middle nanoflags (Fig. 1b). Bottom flags were created by growing defect free primary nanowires under high phosphine flow (Fig. 1c).

 

Detailed investigation, using aberration corrected high resolution TEM (FEI Titan 80-300), high angle annular dark field STEM and electron diffraction, of the flag-like nano-structures at different stages of the growth provided valuable details about the growth mechanism and the resulting morphology of such nano-structures.

 

The main conclusion from the TEM observations is that the growth process involves a few stages. The first stage consists of asymmetrical dissolution of the nanowire (NW) tip into the catalyst (Fig. 2a), followed by the Au catalyst unpinning from the top of the nanowire, and its induced migration along the nanowire sidewall. The final position of the catalyst is determined by the position of structural defects (such as stacking faults - Fig. 2b) along the NW (i.e. the "flagpole"). The next stage involves the epitaxial growth of a pure Wurtzite nano-flag on one of the facets of the "flagpole" resulting in a two dimensional nano-membrane on a one dimensional NW sidewall template (Fig. 2c-d).

 

The comprehensive understanding of the growth process may help improve the synthesis of similar nano-structures. It may allow for better control on the growth process of more complex structures and also help achieving similar nanostructures in a variety of III-V semiconductor material systems with potential applications such as active nanophotonics.

 

References:

  1. Gudiksen, M. S.; Lauhon, L. J.; Wang, J.; Smith, D. C.; Lieber, C. M. Nature 2002, 415 (February), 617–620.
  2. Algra, R. E.; Verheijen, M. a; Borgström, M. T.; Feiner, L.-F.; Immink, G.; van Enckevort, W. J. P.; Vlieg, E.; Bakkers, E. P. a M. Nature 2008, 456 (7220), 369–372.
  3. Gorji Ghalamestani, S.; Ek, M.; Ganjipour, B.; Thelander, C.; Johansson, J.; Caroff, P.; Dick, K. a. Nano Letters 2012, 12 (111), 4914–4919.
  4. Tomioka, K.; Tanaka, T.; Hara, S.; Hiruma, K.; Fukui, T. IEEE J. Sel. Top. Quantum Electron. 2011, 17 (4), 1112–1129.
  5. Nakayama, Y.; Pauzauskie, P. J.; Radenovic, A.; Onorato, R. M.; Saykally, R. J.; Liphardt, J.; Yang, P. Nature 2007, 447 (June), 1098–1101.
  6. Mourik, V.; Zuo, K.; Frolov, S. M.; Plissard, S. R.; Bakkers, E. P. a. M.; Kouwenhoven, L. P. Science (80-. ). 2012, 336, 1003.
  7. A. Kelrich, O. Sorias, Y. Calahorra, Y. Kauffmann, R. Gladstone, S. Cohen, M. Orenstein and D. Ritter, Nano Letters 2016, 10.1021/acs.nanolett.6b00648.

Yaron KAUFFMANN (Haifa, Israel), Alexander KELRICH, Dan RITTER
Salle Prestige Gratte Ciel

"Tuesday 30 August"

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IM1-II
10:15 - 12:30

IM1: Tomography and Multidimensional microscopy
SLOT II

Chairpersons: Sara BALS (Chairperson, Antwerpen, Belgium), Wolfgang LUDWIG (Chairperson, Lyon, France), Sergio MARCO (Chairperson, Paris, France)
10:15 - 10:45 #8320 - IM01-S32 Electron Tomography at the Frontiers of Materials Chemistry.
Electron Tomography at the Frontiers of Materials Chemistry.

This presentation will follow two themes. The first considers recent contributions of electron tomography in materials chemistry, with particular focus on rationally designed multi-scale and multi-component systems. Second, developments and future prospects in electron tomographic methodology will be discussed.

 

Summarised in Figures 1 and 2, for example, is a recent study of Au nanorpisms decorated with Pt nanoparticles of size relevant for catalysis [1]. The tomographic analyses disclosed otherwise ambiguous details of the multi-component architecture, revealing that both pseudospherical protrusions and dendritic Pt nanoparticles grow on all faces of the nanoprisms, the faceted or occasionally twisted morphologies of which were also revealed, and shedding light on alignment of the Pt nanoparticles. Complementary electron energy-loss spectrum imaging showed that the Au nanoprisms support multiple localized surface plasmon resonances despite the presence of pendant Pt nanoparticles. These insights suggest potential applications in plasmon-enhanced catalysis and in situ monitoring of chemical processes via surface-enhanced spectroscopy, and pave the way toward comprehensive engineering of such multi-functional nanostructures.

 

With the widespread adoption of scanning transmission electron microscopy and high-angle annular-dark field imaging, structural electron tomographic studies have reached a consistently high standard. The fidelity of such studies has also been raised significantly by the development of advanced reconstruction algorithms, such as those based on compressed sensing [2]. These are undergoing continual evolution to address the range of contexts and challenges faced in contemporary nanoscale investigations, including quantitative, low-dose and analytical electron tomography.

 

Significant advances in hardware, such as fast and efficient X-ray and electron energy-loss spectrometers, and new camera technologies, have opened the flood gates to analytical electron tomography [3]. New ‘big data’ challenges are faced in the processing and analysis of multi-dimensional tomography data sets. In this regard, post facto ‘computational microscopy’ is becoming increasingly important; and versatile computational approaches can yield rich rewards. Indeed, computational analysis combined with advanced reconstruction can enable capture of the salient information content in a powerful and efficient manner. Computational modelling also offers the opportunity to utilise signals that have traditionally been thought unsuitable for tomography. Combined, hardware and computational advances are enabling a new era of analytical electron tomography, providing sophisticated 3D mapping at the nanoscale, spanning composition, crystallography, chemical, optical and electronic properties.

 

References

[1] R.K. Leary et al. J. Phys. Chem. C DOI: 10.1021/acs.jpcc.6b02103

[2] R.K. Leary et al. Ultramicroscopy 131 (2013) 70-91

[3] R.K. Leary & P.A. Midgley MRS Bulletin (in press)

 

Acknowledgements

I am grateful for a Junior Research Fellowship at Clare College, and for financial support from Emilie Ringe and Paul Midgley.


Rowan LEARY (Cambridge, United Kingdom)
Invited
10:45 - 11:15 Multimodal and multidimensional tomography with a hard X-ray nanoprobe. Peter CLOETENS (Invited speaker, GRENOBLE CEDEX 9, France)
Invited
11:15 - 11:30 #5776 - IM01-OP039 Nanoparticles quantification inside cells by near-edge absorption soft X-ray nanotomography.
Nanoparticles quantification inside cells by near-edge absorption soft X-ray nanotomography.

Recent advances in superparamagnetic iron oxide nanoparticles (SPION) design have generated new possibilities for nano-biotechnology and nano-medicine.  Achieving the full potential of SPION will nonetheless require precise quantitative analysis at sufficient resolution to model the interactions between nanoparticles and the cell environment.  The results from this analysis will determine the dose for either drug-delivery or hyperthermia treatments as well as its feasibility.  To get an insight into this problem we incubated 15 nm SPION functionalized with dimercaptosuccinic acid with MCF-7 breast cancer cells [1] as a model system to be analyzed exploiting the iron differential absorption contrast in the L2-edge.  Near-edge absorption soft X-ray nanotomography (NEASXT) combines whole-cell 3D structure determination at 50 nm resolution, with 3D elemental mapping and high throughput.  We solved three-dimensional distribution of SPIONs within cells with sensitivity sufficient for detecting the density corresponding to a single nanoparticle (Fig. 1)[2].

References:

[1] Chiappi M, Conesa JJ, Pereiro E, Sorzano CO, Rodríguez MJ, Henzler K, Schneider G, Chichón FJ, Carrascosa JL.  Cryo-soft X-ray tomography as a quantitative three-dimensional tool to model nanoparticle:cell interaction.  J Nanobiotechnology. 2016 Mar 3;14(1):15. doi: 10.1186/s12951-016-0170-4.

[2] Conesa JJ, Otón J, Chiappi M, Carazo JM, Pereiro E, Francisco Javier Chichón FJ, Carrascosa JL.  Intracellular nanoparticles mass quantification by near-edge absorption soft X-ray nanotomography.  Scientific Reports 6, Article number: 22354 (2016) doi:10.1038/srep22354.


Jose Javier CONESA (Madrid, Spain), Joaquin OTON, Michele CHIAPPI, Eva PEREIRO, José María CARAZO, Francisco Javier CHICHON, Jose L. CARRASCOSA
11:30 - 11:45 #5929 - IM01-OP041 Utilising correlative 3D imaging to understand creep cavitation in stainless steel.
Utilising correlative 3D imaging to understand creep cavitation in stainless steel.

The role of grain boundary orientation and secondary phase precipitation on creep cavitation in a stainless steel sample has been investigated using a correlative tomography1 approach. A number of different 3D imaging techniques are combined on the same sample in order to understand the initiation and progression of cavitation.

Correlative imaging has become an important tool in both biology2,3 and materials science4, where it provides 2D information of the same sample area at multiple length scales. Correlative tomography describes the extension of  correlative imaging to three dimensions via a range of techniques, which also provides the opportunity to probe sub-surface volumes1.

The position, size and morphology of cavities on three grain boundaries in a stainless steel sample taken from a power station steam header were examined using X-ray computed tomography (CT) 5. X-ray CT demonstrates that the presence of cavities, as well as their size and shape, varies for each of the grain boundaries examined in this study (Figure 1). Subsequently, FIB-SEM slice and view provides a higher-resolution analysis of the same sample to resolve and identify the precipitates decorating the cavitated grain boundaries. Additionally, 3D electron backscatter diffraction (EBSD) mapping reveals the misorientation at grain boundaries and thus offers some insight in to why certain boundaries may possess cavities and whether grain boundary misorientation affects the size and shape of cavities.

Furthermore, a 200 nm diameter pillar was sectioned from one of the cavitated boundaries in order to perform scanning transmission electron microscope (STEM) – energy dispersive X-ray (EDX) tomography 6,7. STEM-EDX tomography reveals the distribution of elements at nanometre scale in three dimensions (Figure 2). This high-resolution chemical information aids understanding of precipitate formation and provides accurate characterisation of precipitate morphology.

The correlative 3D imaging approach applied here gives unprecedented insight in to cavitation in stainless steels and is also applicable to a wide range of other materials that display characteristic features at a number of different length scales.

References

1              Burnett, T. L. et al. Correlative Tomography. Scientific Reports 4, (2014).

2              Caplan, J., Niethammer, M., Taylor Ii, R. M. & Czymmek, K. J. The power of correlative microscopy: multi-modal, multi-scale, multi-dimensional. Carbohydrates and glycoconjugates/Biophysical methods 21, 686-693 (2011).

3              Sengle, G., Tufa, S. F., Sakai, L. Y., Zulliger, M. A. & Keene, D. R. A Correlative Method for Imaging Identical Regions of Samples by Micro-CT, Light Microscopy, and Electron Microscopy: Imaging Adipose Tissue in a Model System. Journal of Histochemistry & Cytochemistry 61, 263-271 (2013).

4              Dumpala, S. a. O. A. A. a. P. S. a. B. S. R. a. L. J. M. a. R. K. Correlative Imaging of Stacking Faults using Atom Probe Tomography (APT) and Scanning Transmission Electron Microscopy (STEM). Microscopy and Microanalysis 20, 996-997, (2014).

5              Maire, E. & Withers, P. J. Quantitative X-ray tomography. International Materials Reviews 59, 1-43, (2014).

6              Lepinay, K., Lorut, F., Pantel, R. & Epicier, T. Chemical 3D tomography of 28 nm high K metal gate transistor: STEM XEDS experimental method and results. Micron 47, 43-49, (2013).

7              Slater, T. J. A. et al. Correlating Catalytic Activity of Ag-Au Nanoparticles with 3D Compositional Variations. Nano Letters 14, 1921-1926, (2014).


Thomas SLATER (Manchester, United Kingdom), Robert BRADLEY, Remco GEURTS, Giacomo BERTALI, Grace BURKE, Sarah HAIGH, Philip WITHERS, Timothy BURNETT
11:45 - 12:00 #6464 - IM01-OP048 Understanding the degradation of Pt nanoparticles in a fuel cell electrode via identical location electron tomography.
Understanding the degradation of Pt nanoparticles in a fuel cell electrode via identical location electron tomography.

The degradation and high cost of electrodes materials used in proton exchange membrane fuel cells (PEMFCs) are major barriers limiting their commercialization in automotive vehicles [1]. The search for more affordable electrode materials has focused on controlling the surface structure and composition of novel multi-metallic catalytic nanoparticles on high surface area support membrane [2]. During fuel cell operation, the catalyst nanoparticles can dissolve, re-deposit and agglomerate, resulting in electrochemical surface area losses, and an associated decrease in catalyst activity [3]. It is therefore critical to understand the degradation mechanism of the nanoparticle catalysts during electrochemical aging in a fuel cell electrodes in order to improve the performance and lifetime of PEMFCs. Here we characterize a newly proposed fuel cell cathode material, comprised of nano-particulate platinum on a NbOx-carbon hybrid support, using identical location electron tomography. A full HAADF-STEM tomographic tilt series of several representative clusters were obtained before and after acclerated stress tests (30,000 cycles from 0.6 to 1.0 V in an electrochemical cell).

Preliminary results are summarized in Figure 1. A three dimensional (3D) schematic of a simple PEMFC shows the overall structure and location of the cathode electrode catalyst material used in this study. Pt nanoparticles, a few nanometers in diameter, decorate the complex, 3D NbOx-carbon hybrid support structure, imaged by HAADF STEM under identical conditions in (b) before and after electrochemical cycling and at two tilts separated by 400. The 3D tomographic reconstructions of the structure are aligned and compared in (c). The high fidelity of the reconstructions and the relatively small overall changes observed in the structure enabled the semi-automated matching of over 500 individual Pt nanoparticles before and after cycling (d). The semi-automatized approach was accomplished with the aid of quantitative image analysis techniques including histogram normalization and maximum entropy thresholding, and alignment of the before and after reconstructions via a singular valued decomposition of the reconstructed Pt centroids matrix.  Preliminary results suggest that a net leaching of the Pt into solution has occurred during cycling, indicated by the overall reduction in size of a vast majority of Pt nanoparticles (e). Analysis of 3D reconstructions obtained from Pt-NbOx-carbon hybrid structures differing in their Pt/NbOx ratio are underway to better elucidate the role of NbOx in the degradation of Pt.

Identical location electron tomography before and after electrochemical cycling has provided valuable insight into the degradation mechanism of the PEMFC electrode during cycling, enabling more informed decisions for the design of high-performance durable electrode materials.

 

References

[1] M. K. Debe, Nature, vol. 486, no. 7401, pp. 43–51, 2012.

[2] Y. Wang, K. S. Chen, J. Mishler, S. C. Cho, and X. C. Adroher, Appl. Energy, vol. 88, no. 4, pp. 981–1007, 2011.

[3] D. Banham, S. Ye, K. Pei, J. Ozaki, T. Kishimoto, and Y. Imashiro, J. Power Sources, vol. 285, pp. 334–348, 2015.

 

Acknowledgements

GAB is grateful for funding from NSERC under the CaRPE-FC network and to AFCC for partially supporting this work.


David ROSSOUW (Dundas, Canada), Lidia CHINCHILLA, Tyler TREFZ, Natalia KREMLIAKOVA, Gianluigi BOTTON
12:00 - 12:15 #5119 - IM01-OP036 Multi scale tomography of materials for Li-ion battery electrodes.
Multi scale tomography of materials for Li-ion battery electrodes.

Increasing energy capacity, power density and cycle life of Li-ion batteries requires optimizing the composite electrodes microstructure. 3D simulation analysis and modeling have shown that the amount, the size, the shape, the tortuosity and the specific surface area of pores and particles are all key parameters for the improvement of electrode performance.

Recently, the 3D morphologies of various anodes and cathodes for Li-ion batteries have been evaluated by FIB/SEM and X-Ray Computed Tomography (XRCT). In addition, 3D imaging softwares allow automatic processing and quantifying measurements by finite element calculations or other numerical models. XRCT is non destructive but routine procedures are limited to rather poor spatial resolution. Combined Focused Ion Beam (FIB) and Scanning Electron Microscopy (SEM) is destructive but has recently emerged as an established technique for the three-dimensional imaging at high spatial resolution, inaccessible with laboratory X-ray tomography. Electron TEM tomography is finally an option to improve the spatial resolution down to several nanometers.

This paper will give examples of different materials used for Li-ion  battery electrodes, analyzed at different scales with all these different 3D tomography techniques. It will be shown that static characterisation of the prestine materials gives the initial morphology of the electrodes.

Samples can then be analysed after electrical cycling and this shows the degradation mechanisms. Some methods even allow to do the observation in operado.


Eric MAIRE (VILLEURBANNE), Thierry DOUILLARD, Aurélien ETIEMBLE, Lucian ROIBAN, Victor VANPEENE
12:15 - 12:30 #6483 - IM01-OP049 3-D EM exploration of the hepatic microarchitecture – lessons learned for large-volume in situ serial sectioning.
3-D EM exploration of the hepatic microarchitecture – lessons learned for large-volume in situ serial sectioning.

To-date serial block-face scanning electron microscopy (SBF-SEM) dominates as the premier technique for generating three-dimensional (3-D) data of resin-embedded biological samples at an unprecedented resolution and depth volume. Given the relative infancy of the technique, limited literature is currently available regarding the applicability of SBF-SEM for the ultrastructural investigation of tissues that are inherently low in contrast, including hepatic tissue. Such tissues, relative to neural tissue – which has been extensively investigated by means of SBF-SEM – require dedicated SBF-SEM specimen preparation protocols combined with optimised imaging conditions in order to collect large-volume 3-D image data, at appropriate resolution which is devoid of imaging artefacts that are inherent to SEM investigations of uncoated samples.

          Therefore, in this study, we provide a comprehensive and rigorous appraisal of different tissue preparation protocols for the large-volume exploration of hepatic architecture at an unparalleled XY and Z resolution. In so doing, we qualitatively and quantitatively validate the use of a novel and time-saving SBF-SEM tissue preparation protocol, which involves the concomitant application of heavy metal fixatives, stains and mordanting agents for the subsequent imaging of contrast-rich SBF-SEM data, 3-D reconstruction and modelling of the hepatic architecture. We further extrapolate large-volume morphometric data relating to key tissue features of the murine liver, including hepatocytes, the hepatic sinusoids and bile canaliculi network (Fig. 1).

         Furthermore, we combine our validated SBF-SEM specimen preparation protocol with a correlative light and electron microscopy approach, to combine the respective advantages of confocal scanning laser microscopy and SBF-SEM in order to selectively picture particular subcellular hepatic details in a novel manner. We propose that this correlated multidimensional light and electron imaging approach will allow the study of different liver diseases under relevant experimental tissue models.


Gerald SHAMI (Sydney, Australia), Delfine CHENG, Minh HUYNH, Celien VREULS, Eddie WISSE, Filip BRAET
Salle Gratte Ciel 1&2

"Tuesday 30 August"

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LS1-II
10:15 - 12:30

LS1: Macromolecular assemblies, supra molecular assemblies
SLOT II

Chairpersons: Bettina BOETTCHER (Chairperson, Edinburgh, United Kingdom), Karen DAVIES (Staff Scientist) (Chairperson, Berkeley, USA), Guy SCHOEHN (Chairperson, Grenoble, France)
10:15 - 10:45 #8354 - LS01-S03 High resolution cryo-EM of eukaryotic proteasomes: an emerging tool for therapeutic drug development.
High resolution cryo-EM of eukaryotic proteasomes: an emerging tool for therapeutic drug development.

Recently the field of biological structural electron microscopy has seen an enormous transformation, primarily triggered by the availability of improved electron microscopes and direct electron detectors. It is now possible to use electron cryo-microscopy (cryo-EM) and single particle analysis to determine the structure of proteins to resolutions that used to be achievable only by crystallography or NMR methods. The structural information attainable by such methodologies can in principle be used to infer into the detailed molecular mechanisms of proteins and protein complexes. We explored their application to study protein/ligand interactions using the eukaryotic 20S proteasome core.

The proteasome is a highly regulated protease complex essential in all eukaryotes for its role in cell homeostasis and regulation of fundamental mechanisms such as cell cycle progression. The proteasome proteolytic active sites are enclosed within its 20S core. In eukaryotes, the 20S proteasome is a ~750 kDa complex formed by 7 individual α and 7 individual β subunits, arranged in a barrel shaped two-fold symmetric α7β7β7α7 assembly. While the 20S proteasome core is a well-established target for cancer therapy, its inhibition is being further explored for an increasing range of varied therapeutic usages, including inflammatory disorders, viral infections and tuberculosis. We used cryo-EM and single particle analysis to determine the structure of the human 20S proteasome core bound to a substrate analogue inhibitor molecule, at a resolution of around 3.5Å. The resulting map allowed the building of protein coordinates as well as defining the location and conformation of the inhibitor at the different active sites. These results serve as proof of principle that cryo-EM is emerging as a realistic approach for more general structural studies of protein/ligand interactions, with its own advantages compared with other methods of protein structure determination. Cryo-EM has the potential benefits of extending such studies to complexes unsuitable for other methods of structure determination, namely by requiring significantly less amounts of sample, and allowing closer to physiological conditions, preserving ligand specificity. Within this context, we extended our studies to assist in the development of new highly specific inhibitors targeting the Plasmodium falciparum proteasome. Plasmodium falciparum is the parasite responsible for the most severe form of malaria, against which artemisinin is currently the forefront medication. The spreading of artemisinin resistant parasites, first identified in the Southeast Asia, represents a major threat to human health and to the current programs aiming at controlling and eventually eradicating malaria and urges the development of new antimalarials. We determined the structure of the Plasmodium falciparum 20S proteasome core bond to a new specific inhibitor, developed by our collaborator Matt Bogyo, Stanford University, at a resolution of around 3.6Å (figure 1). Our structure, and its comparison with that of the human 20S proteasome core, revealed the molecular basis for the inhibitor specificity for the parasite complex and for the improvement of this ligand into a more potent anti-malaria drug prototype, with demonstrated low toxicity to in vivo model hosts. The cryo-EM structure of the Plasmodium falciparum 20S proteasome can assist in the development of such inhibitors as ligands with potential as new-generation antimalarials.


Paula DA FONSECA (Cambridge, United Kingdom)
Invited
10:45 - 11:15 #8368 - LS01-S04 Our muscle at near-atomic resolution - Cryo-EM structure of the F-actin-tropomyosin complex.
Our muscle at near-atomic resolution - Cryo-EM structure of the F-actin-tropomyosin complex.

Muscular movement plays an essential role not only in our lives but also describes a fundamental mechanism of force production. Filamentous actin (F-actin) is the major protein of muscle thin filaments, and actin microfilaments are the main component of the eukaryotic cytoskeleton. The interaction of myosin with actin filaments is the central feature of muscle contraction and cargo movement along actin filaments. In striated muscle fibres, this interplay is mainly regulated by tropomyosin and troponin. Although crystal structures for monomeric actin are available, the difficulty of obtaining diffracting crystals, however, has prevented structure determination by crystallography of F-actin. High-resolution structures of F-actin in complex are still missing, hampering our understanding of how disease-causing mutations affect the function of thin muscle filaments and affecting skeletal and cardiac muscles.

We solved the three-dimensional structure of F-actin in complex with tropomyosin at a resolution of 3.7 Å (von der Ecken et al., 2015). We used cutting edge transmission electron cryomicroscopy and direct electron detectors and implemented new methods for processing of the data. The structure reveals insights in the inner interaction of the F-actin subunits and the interplay of F-actin and tropomyosin at near-atomic resolution.

Reference:

von der Ecken J., Müller M., Lehman W., Manstein D.J., Penczek P.A., Raunser S. (2015): Structure of the F-actin-tropomyosin complex. Nature 519, 114-117.


Julian VON DER ECKEN (Dortmund, Germany), Mirco MÜLLER, William LEHMAN, Dietmar J. MANSTEIN, Pawel A. PENCZEK, Stefan RAUNSER
Invited
11:15 - 11:30 #6230 - LS01-OP003 Near atomic structure of flexible filamentous pepino mosaic virus by high resolution cryo-EM.
Near atomic structure of flexible filamentous pepino mosaic virus by high resolution cryo-EM.

Flexible filamentous viruses belonging to the Alphaflexiviridae family cause from severe to mild diseases in agricultural crops, often reducing yield and crop quality. Viral particles from the Alphaflexiviridae group are formed by a (+)ssRNA molecule encapsidated by single capsid protein (CP) monomers arranged in helical fashion. Pepino mosaic virus (PepMV) is a flexible filamentous plant virus belonging to the genus Potexvirus included in the family Alphaflexiviridae which genome consists of a ~6.4 kb (+)ssRNA and encodes five proteins. 

 

We report here the structure of intact PepMV virions by cryoEM at 3.9 Å resolution (Agirrezabala et al., 2015). The results and the resolution achieved (Figure 1) allowed the modeling of the CP, the (+)ssRNA and their relative interactions. The CP was modeled starting with the CP from PapMV (Yang et al., 2012), clearly showing a similar folding of the α-helical domain for the Alphaflexiviridae family. The ssRNA is allocated and protected in a continuous groove of high electropositive potential built up by the CP in helical arrangement. The CP polymerize through a flexible N-terminal arm providing the structural basis for the flexibility of the virus, in similar organization as the observed for BaMV (DiMaio et al., 2015).

 

Interestingly, the overall structure and organization of CP from PepMV is similar to the organization of nucleoproteins from the Bunyaviridae family, a group of enveloped (-)ssRNA viruses. Common features include: the folding and arrangement of the α-helical main domain; the groove for the ssRNA; the N-terminal arm for polymerization; and the relative position between all these elements. Although structural homology between viruses revealed by their atomic structures is common, in the current case, the different nature of capsid protein and nucleoprotein might have profound evolutionary implications.

 

 

References

 

-Agirrezabala, X., Mendez-Lopez, E., Lasso, G., Sanchez-Pina, M.A., Aranda, M., and Valle, M. (2015). The near-atomic cryoEM structure of a flexible filamentous plant virus shows homology of its coat protein with nucleoproteins of animal viruses. Elife 4.

 

-DiMaio, F., Chen, C.C., Yu, X., Frenz, B., Hsu, Y.H., Lin, N.S., and Egelman, E.H. (2015). The molecular basis for flexibility in the flexible filamentous plant viruses. Nat Struct Mol Biol 22, 642-644.

 

-Yang, S., Wang, T., Bohon, J., Gagne, M.E., Bolduc, M., Leclerc, D., and Li, H. (2012). Crystal structure of the coat protein of the flexible filamentous papaya mosaic virus. Journal of molecular biology 422, 263-273.


Xabier AGIRREZABALA, Francisco MENDEZ, Maria Amelia SANCHEZ-PIÑA, Miguel Angel ARANDA, Mikel VALLE (Derio, Spain)
11:30 - 11:45 #6941 - LS01-OP009 Structure of filamentous alternanthera mosaic virus and mechanism of its activation.
Structure of filamentous alternanthera mosaic virus and mechanism of its activation.

Alternanthera mosaic virus (AltMV) is a filamentous plant virus belonging to the genus Potexvirus. The virus contains a single-strand RNA and coat protein (CP) that self-assembles around RNA into a flexible helical sheath. In contrast to rich information on the rigid rod plant viruses, structural information for flexible plant viruses has been lacking. High-resolution structures are available only for papaya mosaic virus (Yang et al., 2012) and bamboo mosaic virus (DiMaio et al., 2015), and for some other Potexviruses low-resolution structures exist.

The aim of this work is to determine the structure of AltMV using cryo-EM and image processing and to propose a mechanism of uncoating of viral RNA during infection.

The virus particles were purified as described by Mukhamedzhanova et al. (2009) and quickly frozen in liquid ethane. The high resolution data were collected on Titan Krios electron microscope (FEI) at 300 kV acceleration voltage, using low dose condition. Images were captured using Falcon direct detector and image processing has been accomplished using software packages IMAGIC and Spider. All images (2000 single particles) were corrected for the CTF.

The helical parameters were estimated and the obtained 3D map of viral particle had a resolution of 7Å which allowed to reveal the orientation of alpha helixes. The high radius region of AltMV was quite similar to that of PapMV and this could be explained by high (79.8%) homology of CPs of these viruses (Geering, 1999). The electron density revealed a central channel with ~18Å in diameter. The viral RNA may be positioned at 36Å radius of the particle.

As crystal structure of AltMV is not known the homology modelling of AltMV coat protein was carried out. In order to interpret the obtained structure the homology model was fitted into 3D electron density map (Fig. 1). Like in other Potexviruses with known structure (Yang et al., 2012; DiMaio et al., 2015)N terminus of AltMV CP contacts with adjacent protein subunit. This contact likely plays a key role in maintaining of virion stability.

Previously it was shown that encapsidated AltMV RNA is nontranslatable in vitro, but can be converted into a translatable form after phosphorylation of coat protein (Mukhamedzhanova et al., 2011).

In order to understand the mechanism of uncoating of AltMV RNA after such phosphorylation a series of umbrella sampling simulations was carried out. We measured binding free energy of two AltMV CP subunits with all serine and threonine residues exposed on outer surface of a virion phosphorylated and compared it with binding free energy of AltMV CP subunits without phosphorylation. Our results indicate that phosphorylation considerably reduces binding energy of the complex and promotes its disassembly. The minimum on the energy profile of the non-phosphorylated complex corresponded to a conformation where N terminus of one subunit was in a close contact with the adjacent protein subunit. For the phosphorylated complex the minimum was reached when N terminus moved 1 nm away from the neighboring protein subunit (Fig. 2).

Thus the new evidence that the mechanism of AltMV activation during infection may include phosphorylation of CPs has been obtained. The phosphorylation causes destruction of the contact between N terminus of a CP and adjacent protein subunit. As a result, AltMV virion becomes unstable without the contact and uncoating of RNA starts.

Acknowledgements: The reported study was funded by RFBR according to the research project No. 16-34-00658 мол_a.


Evgeniya PECHNIKOVA (Moscow, Russia), Tatiana STANISHNEVA-KONOVALOVA, Ekaterina PETROVA, Anton SEDOV, Alexandre VASILIEV, Olga KARPOVA, Olga SOKOLOVA
11:45 - 12:00 #5807 - LS01-OP002 Structural basis of Nanobody-mediated plant virus resistance and vector transmission revealed by cryo-EM.
Structural basis of Nanobody-mediated plant virus resistance and vector transmission revealed by cryo-EM.

Since their discovery, single-domain antigen-binding fragments of camelid-derived heavy chain-only antibodies, also known as Nanobodies (Nbs), have proven to be of outstanding interest as therapeutics against human diseases and pathogens including viruses, but their use against phytopathogens remains limited. Many plant viruses including Grapevine fanleaf virus (GFLV), a vector-transmitted icosahedral virus related to animal picornaviruses, have worldwide distribution and huge burden on crop yields representing billions of US dollars of losses annually, yet solutions to combat these viruses are often limited or inefficient. Here we show that a Nb specific to GFLV confers strong resistance to GFLV upon stable expression in plants due to virus neutralization at an early step of the virus life cycle, prior to cell-to-cell movement. To address the involved molecular mechanisms, we determined the cryo- electron microscopy (cryo-EM) structure of the Nb-virus complex at 2.8 Å resolution revealing the stoichiometric 1:1 complex formed with the viral capsid protein (CP). Remarkably, the conformational surface epitope recognized by the Nb covers a cavity analogous to the canyon of picornaviruses implicated in receptor binding. By showing that this cavity is also involved in nematode transmission of GFLV, our results suggest a structural conservation driving vector specificity and receptor binding among plant and animal Picornavirales. Our findings will not only be instrumental to confer resistance to GFLV in grapevine but more generally they pave the way for the generation of novel antiviral strategies in plants based on Nbs.


Caroline HEMMER, Igor ORLOV (ILLKIRCH CEDEX), Léa ACKERER, Aurélie MARMONIER, Kamal HLEIBIEH, Corinne SCHMITT-KEICHINGER, Emmanuelle VIGNE, Sophie GERSCH, Véronique KOMAR, Lorène BELVAL, François BERTHOLD, Baptiste MONSION, Patrick BRON, Olivier LEMAIRE, Bernard LORBER, Carlos GUTIÉRREZ, Serge MUYLDERMANS, Gérard DEMANGEAT, Bruno KLAHOLZ, Christophe RITZENTHALER
12:00 - 12:15 #6899 - LS01-OP008 Cryo-EM Structural characterization of the M. tuberculosis ESX-1 secreted virulence factor EspB.
Cryo-EM Structural characterization of the M. tuberculosis ESX-1 secreted virulence factor EspB.

Mycobacterium tuberculosis (Mtb) is the top infectious disease killer worldwide. The threat posed by this bacterium is higher than ever, with the recent discovery of multi and extended-drug resistant (MDR, XDR) strains with improved virulence.

Virulent mycobacteria infect their host cells through a Trojan Horse strategy: they get ingested by the normal phagocytosis route but instead of being digested through acidification and maturation of the phagosome to phagolysosome, these bacteria enter the host’s cell cytosol where they replicate freely. Controlled death of the host cell will allow the spreading of the descendants in the infected organism.

A key step in the infectious life cycle of the virulent mycobacteria is their escape from the phagosome compartment [1]. This phenomenon is mediated by the release of different proteins (EsxA, EsxB, EspB) with cytolytic activities, that will perforate the phagosome membrane. These factors are secreted by the specialized machinery ESX-1 of the recently discovered Type 7 Secretion System family [2].

The ESX-1 machinery is a multi-protein complex thought to span the entire mycobacterial cell envelope. It is constituted by a core of structural proteins (EccACabBDE1) and the assembly and/or functioning of the machinery seems to require the recruitment of additional proteins, including substrates.

Among the different ESX-1 substrates, the 48 kDa protein EspB seems to carry multiple roles: this secreted protein carries cytolytic activity on its own; it is co-secreted with EsxA (the main virulence factor) and this secretion is mutually dependent; EspB may also play a structural role suggested by its ability to oligomerize as well as its proteolytic maturation by MycP1 during the translocation process.

Recently, the structure of the N-terminus of EspB was published [3] showing the N-terminal be composed of a bundle of α-helices, similar to other ESX substrates; the C-terminal is predicted to be unfolded. A heptameric structure was modelled computationally based on the monomeric X-ray data in combination with negative-stain electron microscopy 2D classes.

Here, we report structural characterization of EspB using transmission electron microscopy data. We determined the structure of the N-terminal helix bundle, the mature form as well as the pre-protein EspB at sub-nanometer resolution. Moreover, we were able to identify several discrete oligomeric states of the proteins that were not previously observed: these data will aid to a better understanding of ESX-specific substrates.

References:

[1] van der Wel, N., D. Hava, D. Houben, D. Fluitsma, M. van Zon, et al. 2007. M. tuberculosis and M. leprae Translocate from the Phagolysosome to the Cytosol in Myeloid Cells. Cell. 129: 1287.

[2] S.A. Stanley, S. Raghavan, W.W. Hwang, J.S. Cox. 2003. Acute infection and macrophage subversion by Mycobacterium tuberculosis require a specialized secretion system Proc. Natl. Acad. Sci. U. S. A., 100 (2003), pp. 13001–13006

[3] Solomonson M., Setiaputra D., Makepeace K.A., et al. 2015 . Structure of EspB from the ESX-1 type VII secretion system and insights into its export mechanism. Structure. 2015 Mar 3;23(3):571-83.


Giancarlo TRIA, Giancarlo TRIA (Maastricht, The Netherlands), Axel SIROY, Chen DELEI, Nino IAKOBACHVILI, Hirotoshi FURUSHO, Carmen LÓPEZ-IGLESIAS, Raimond B. G. RAVELLI, Peter J. PETERS
12:15 - 12:30 #6565 - LS01-OP005 Can DNA Organization in the Full Bacteriophage Capsid be modified by changes in Temperature or Ionic Conditions?
Can DNA Organization in the Full Bacteriophage Capsid be modified by changes in Temperature or Ionic Conditions?

    As revealed initially by X-ray diffraction and visualized later on by cryoEM in several bacteriophages, the DNA chain confined in the capsid is densely packed and organized locally in such a way that DNA segments form an hexagonal lattice with an average inter-helix spacing aH close to 26 – 27 Å. The 3D organization of DNA in the capsid or the path followed by the chain remains unknown. DNA is kinetically constrained and undergoes out-of-equilibrium conformational dynamics during packaging in the capsid. The structural analysis of full capsids also indicates that there is not a unique deterministic DNA packaging pathway. All consequences of this high confinement on DNA ordering and mobility are not yet well understood.

    Our aim is here to explore how confinement determines DNA organization in the full capsid and to what extent spermine and temperature may affect this ordering. CryoEM has been used to visualize DNA patterns in individual capsids, Circular Dichroism (CD) to detect possible changes of the conformation of DNA and of its supramolecular chiral organization and Small Angle X-ray Scattering (SAXS) to detect possible variations of inter-helix distances, while controlling the conformation of the full capsids. We have compared T5, λ, T7, and Φ29 bacteriophages. This selection let us explore the effect of extreme confinement and compare capsids of different shape (prolate or isometric icosahedron) and size, with or without an internal core. We also compared T5 strains containing the full-length genome to the mutant T5st0 containing a shorter DNA chain, to detect whether possible effects may be increased or reduced at lower densities.

    Selected CryoEM views show the overall shape of the phages (Figure 1A) and highlight the local hexagonal DNA lattice seen in top view (domains framed in red in Figure 1B). In the direction normal to the capsid faces, up to 5-6 layers define the thickness of the domain. Figure 1C presents structure factors recorded for all phages.

    - First, we did not detect any change of DNA organization as a function of temperature between 20 to 40°C, as opposed to previous results (1, 2).

    - Second, the presence of spermine (4+) enlarges the size of the hexagonal domains determined by the width of the diffraction peak: from 139 to 156 Å in T5, from 111 to 123 Å in λ, from 111 to 128 Å in T7, and from 96 to 110 Å in Φ29 when 100 mM sp is added in HS buffer (10 mM Tris-HCl, 100 mM NaCl, 1 mM MgCl2, and 1 mM CaCl2). 4 mM spermine is enough to produce this effect. We interpret this increase of the domain size detected for all phages as an increase of the DNA ordering upon spermine addition in agreement with (3). The addition of spermine, by reducing the repulsive interactions between DNA strands would help the local hexagonal order to expand and slightly move the defects further apart. In this hypothesis, DNA reorganization would require very minor sliding of the DNA chain inside the capsid. The enlargement of the DNA hexagonal domains by spermine does not modify the CD spectrum of the encapsidated DNA that stays close to the typical B-type spectrum. Our estimations of the DNA concentrations based on SAXS measurements (540 ± 20 mg/ml in T5, 525 ± 20 mg/ml in λ, 575 ± 20 in T7 and 615 ± 50 in Φ29) seem to indicate that the smallest phages (T7 and Φ29) are the most densely packed. The comparison between  λ and T7 (both icosahedral, with dimensions and DNA length in the same range) suggest that the presence of an internal core in T7 facilitate DNA organization by wounding part of the chain around it in a toroidal organization, thus reducing the defect lattice required to solve the frustration arising from the confinement of the hexagonal lattice in an icosahedral capsid (4).

(1) Liu, T. et al, Proc Natl Acad Sci U S A 2014, 111, 14675–14680 (2) Li, D.et al,  A. Nucleic Acids Res 2015, 43, 6348–6358 (3) Lander, G. C. et al, Nucleic Acids Res 2013, 41, 4518–4524 (4) De Frutos et al, JPhysChemB in press.


Marta DE FRUTOS, Amélie LEFORESTIER, Jeril DEGROUARD, Dominique DURAND, Françoise LIVOLANT (ORSAY CEDEX)
Salle Tête d'or 1&2

"Tuesday 30 August"

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LS8-I
10:15 - 12:30

LS8: Human health and disease
SLOT I

Chairpersons: Peter PETERS (University Professor and Director) (Chairperson, Maastricht, The Netherlands), Danijela VIGNJEVIC (Chairperson, Paris, France)
10:15 - 10:45 #8629 - LS08-S25 Real-time subcellular imaging of cancer cell behavior in living mice.
Real-time subcellular imaging of cancer cell behavior in living mice.

Although histological techniques have provided important information on epithelial stem cells and cancer, they draw static images of dynamic processes. To study dynamic processes, we have developed various imaging windows to image intestinal, liver and breast tissue, and visualize the behavior of individual cells at subcellular resolution for several weeks with two-photon intravital microscropy (IVM). Our IVM experiments illustrate that cellular properties and fate of cells are highly dynamic and change over time. For example, we show in healthy and tumorigenic tissues, that cells can acquire and lose stem cell properties, illustrating that stemness is a state as opposed to an intrinsic property of a cell. Moreover, we show that mammary tumor cells that are surrounded by T cells acquire migration properties. An additional aspect that complicates tumor heterogeneity is that cells may exchange active biomolecules through the release and uptake of extracellular vesicles (EVs). Our data shows, in living mice, that malignant tumor cells, through transfer of EVs, enhance the migratory behavior and metastatic capacity of more benign cells. Taken together, these data exemplify that tumor heterogeneity is far more complex than currently anticipated, which has profound consequences for our ideas on the mechanisms of tumor progression and for designing optimal treatment strategies.


Jacco VAN RHEENEN (AD UTRECHT, The Netherlands)
Invited
10:45 - 11:15 #8363 - LS08-S26 Insights into mitochondrial protein import studied by cryoET.
Insights into mitochondrial protein import studied by cryoET.

As the primary cellular source of ATP, mitochondria form a vital bioenergetic, metabolic and signaling hub. Despite the presence of mitochondrial DNA, almost all mitochondrial proteins (99%) are nuclear encoded and are imported from the cytosol. Protein translocases in mitochondrial membranes are therefore essential for correct protein targeting and localisation. Mitochondrial dysfunction is implicated in ageing, as well as a growing number of human pathologies, including certain cancers, genetically inherited syndromes and neurodegenerative disorders such as Alzheimer’s disease. The biogenesis of mitochondrial proteins and import sites are therefore important factors that determine organelle functionality.

 

The broad aim of this research is to understand how protein import is correctly orchestrated and regulated by innovative approaches focussed on state-of-the-art electron cryo-tomography (cryoET). This technique is the method of choice for the study of proteins or complexes in situ (Figure 1). Samples are preserved by cryo-fixation, imaged in the electron microscope, and protein structures can be determined by subtomogram averaging (StA).

 

The majority of precursor proteins (preproteins) are actively imported into mitochondria from the cytosol through the Translocase of the Outer Membrane (TOM) complex, which forms a common entry gate for proteins that are subsequently targeted to various locations. For decades, it has been known that proteins can be imported into mitochondria post-translationally, after synthesis on ribosomes in the cytosol or in vitro. However, information regarding the organisation and distribution of mitochondrial protein import sites was sparse. To image active post-translational protein import in situ, we previously devised a new labelling strategy in which mitochondrial-targeted preproteins were arrested as two-membrane-spanning intermediates through both the TOM complex and the Translocase of the Inner Membrane (TIM23) complex concurrently (Gold, V. A. M. et al. (2014) Nat Commun 5, 4129). This work provided the first views of mitochondrial proteins in the act of import and enabled direct visualization of the number and location of active complexes for the first time (Figure 1). However, information regarding the cytosolic stage of mitochondrial precursor protein import and targeting was still lacking.

 

Most recently, we have developed a new method to investigate the cytosolic stage of mitochondrial protein targeting and import by biochemical techniques, cryo-ET and StA.  This reveals unprecedented details regarding different targeting pathways, shedding light on the interaction between importing proteins and their corresponding membrane-bound translocons. The consequences of these different modes of targeting and import site redistribution will be discussed in the context of mitochondrial protein biogenesis.

 

Legend to Figure 1

1. Top panel: mitochondria embedded in a layer of amorphous ice are imaged in the electron microscope.  Incremental tilts of the sample yield a series of projections from different viewing angles. The relative orientations of the mitochondrion (brown) and the macromolecular complex of interest (red) vary depending on the projection angle. Bottom panel: a 0° tilt projection image of a S. cerevisiae mitochondrion.

2. Top panel: a three-dimensional tomogram is reconstructed from the two-dimensional image series by computational back-projection. The molecular complex of interest is indicated (red, boxed). Bottom panel: a slice through a reconstructed tomogram of the mitochondrion shown in step 1. Labelled importing proteins (black spheres on the outer membrane are indicated (red arrowhead).

3. Top left and bottom panels: surface volume rendering is used to place complexes of interest back into three-dimensional space in order to visualize their distribution in a native-like context. Labelled preproteins (black spheres) are shown on the mitochondrial outer membrane (green). The inner membrane (blue) and crista membranes (yellow) are also shown. Top right panel: a slice through the reconstructed tomogram of a labelled preprotein (black sphere, red arrowhead) engaged in mitochondrial import.


Vicki GOLD (Frankfurt am Main, Germany), Piotr CHROŚCICKI, Piotr BRĄGOSZEWSKI, Agnieszka CHACINSKA
Invited
11:15 - 11:45 #8728 - LS08-S27 Three-dimensional maps of full-length huntingtin and linkage to development of Huntington’s disease.
Three-dimensional maps of full-length huntingtin and linkage to development of Huntington’s disease.

Among neurodegenerative diseases causing serious medical and social problems, in particular in association with an aging population, Huntington´s disease (HD) is classified as a representative one of nine polyglutamine (polyQ) tract disease families. The polyQ diseases cause dominantly inherited neurodegenerative disorders that typically manifests itself during midlife with motor, psychiatric and cognitive symptoms leading to death in 15-20 years after onset (Fig. 1). They evolve from an expansion of the CAG repeat tract in single responsible genes.

HD results from polyQ expansion at the N-terminal in the huntingtin protein (3,144 amino acid protein). The longer the repeat is, the earlier the onset of disease. A metastudy showed that the prevalence of HD in Europe, North America and Australia was 5.7 per 100 0001.

Genetic studies showed that huntingtin knock-out cause embryonic lethality implicating the important role of huntingtin during development2. Despite that huntingtin was identified to be responsible for HD two decades ago, little is known about its biological function nor the molecular mechanism of the pathogenesis. Even if the polyQ expansion in huntingtin occurs close to the N-terminus it is imperative to investigate the function of huntingtin in full-length context as the expansion is likely to modulate activities of the full-length protein. Huntingtin has several HEAT motifs without any known functional domain. Therefore, huntingtin was predicted to adopt an extended shape as shown in other HEAT repeat proteins.

For the present structural studies, allelic series of huntingtin with various polyQ lengths were successfully expressed and purified. We have obtained the overall structure of full-length huntingtin having 23 (Q23) and 78 (Q78) glutamines at medium-resolution by negatively-stained single-particle electron microscopy (EM) showing the protein adopts a spherical shape3 (Fig. 2). CD spectra were consistent with a predominant α-helical secondary structure. The position of the polyQ region could be mapped onto the structure following antibody-bound amino-terminal FLAG-tags of the Q23- and Q78-huntingtins. Furthermore, cross-linking mass spectrometry analysis revealed a modulated network of intramolecular contacts that together with the EM data suggests that huntingtin is composed of five structural domains. Thus, in a large size protein like huntingtin, HEAT repeat domains can be folded back to form a closed helical solenoid with functional sites in the internal cavity. The difference in structures of the EM maps of Q23 and Q78 huntingtin and between cross-linking patterns of the two species suggest modulation of the overall structure with increasing polyQ lengths.

  1. Pringsheim, T. et al. (2012) Mov Disord. 27, 1083-91.
  2. Nasir, J. et al. (1995) Cell 81, 811–823.
  3. Vijayvargia, R. et al. (2016) eLife, Mar 22;5. pii: e11184. doi: 10.7554/eLife.11184.


Taeyang JUNG, Ihnsik SEONG, Ji-Joon SONG, Hans HEBERT (Huddinge, Sweden)
Invited
11:45 - 12:00 #5482 - LS08-OP030 Structure and viability of atypical morphological forms of Lyme disease spirochetes.
Structure and viability of atypical morphological forms of Lyme disease spirochetes.

Spirochetes Borrelia burgdorferi sensu lato are the causative agents of Lyme disease transmitted by the hard ticks of the genus Ixodes. Spirochetes are motile bacteria with typical flat-wave morphology. These features are crucial for efficient dissemination and evasion of immune responses. However, several reports described presence of non-motile atypical morphologies, e.g. rod-shaped forms, looped/ring shaped forms and spherical/cystic forms called round bodies (RBs).  These forms were observed in the cerebral cortex of patient with chronic Lyme neuroborreliosis [1]. Recently, we proved long term survival of Borrelia in patients after extended antibiotic treatment by successful isolation of live spirochetes [2].

Now, we would like to answer questions, (i) whether RBs represent resistant forms of persisting Lyme disease spirochetes and (ii) whether the transformation of flat-waved spirochetes into RBs forms influences the capability to withstand unfavourable environmental conditions.

For this purpose, we studied morphology and three dimensional arrangements of spirochetes isolated from patients by transmission electron microscopy and electron tomography on serial resin sections and negatively stained spirochetes. Next, using a modification of our novel approach combining cryo-fluorescence and cryo-scanning electron microscopy, we interconnect viability assay with visualization of morphology at high resolution [3]. Viability of GFP expressing spirochetes in a response to host sera was assessed using propidium iodide exclusion method. Obtained results confirmed different susceptibility to different host sera, previously described by our colleagues [4]. We confirmed the formation/viability of RB forms under specific conditions. 

Acknowledgment: This work was supported by the TA CR (TE01020118), European FP7 project 278976 ANTIGONE, Czech-BioImaging (LM 2015062)

 

[1] Miklossy J, Kasas S, Zurn AD, et al. (2008) Persisting atypical and cystic forms of Borrelia burgdorferi and local inflammation in Lyme neuroborreliosis. J Neuroinflammation. 5: 40.

[2] Rudenko N, Golovchenko M, Vancova M, Clark K, Grubhoffer L, JH Oliver Jr. (2016) Isolation of live Borrelia burgdorferi sensu lato spirochetes from patients with undefined disorders and symptoms not typical for Lyme diseases. Clin Microbiol Infect 22: 267.

[3] Strnad M, Elsterová J, Schrenková J, Vancová M, Rego R, Grubhoffer L, Nebesářová J (2015): Correlative cryo-fluorescence and cryo-scanning electron microscopy as a straightforward tool to study host-pathogen interactions. Scientific Reports. Sci Rep. 5:18029.

[4] Tichá L, Golovchenko M, Oliver JH, Grubhoffer L, Rudenko N (2016): Sensitivity of Lyme Borreliosis Spirochetes to Serum Complement of Regular Zoo Animals: Potential Reservoir Competence of Some Exotic Vertebrates. Vector-Borne and Zoonotic Dis 16: 13–19. 


Marie VANCOVÁ (Ceske BUdejovice, Czech Republic), Nataliia RUDENKO, Golovchenko MARYNA, Martin STRNAD, Tomáš BÍLÝ, Libor GRUBHOFFER, Jana NEBESÁŘOVÁ
12:00 - 12:15 #5881 - LS08-OP031 Novel in vivo imaging techniques to visualise renal morphology and function in acute kidney injury.
Novel in vivo imaging techniques to visualise renal morphology and function in acute kidney injury.

Introduction: The medical uses of optical imaging are revolutionizing medicine; optical imaging is undergoing explosive growth fuelled by advances in high-sensitivity detectors. These light based systems utilise multiphoton microscopy (MPM) to provide high resolution and quantitative imaging of cellular metabolism in in situ and in vivo biological tissues and organs – in space (three dimensions), in time, in spectra, and in fluorescence anisotropy (i.e. a total of 6 dimensions). MPM allows in vivo visualisation of intact kidney tissue at the single cell resolution, which is solved a long-standing critical technical barrier in renal research to study several complex and inaccessible cell types and anatomical structures. In this study, MPM was employed to visualise morphology changes and study the functions of acute kidney injury (AKI).

Methods: Glycerol-induced AKI model (elevated serum creatinine) can be used to mimic rhabdomyolysis, which was developed in male C57BL/6 mice (8-12 weeks) by intramuscular injection of 50% (v/v) glycerol /PBS (10 ml/kg) into the left hind leg. The control mice were injected by PBS using the same method. After 24 hours, kidneys were exposed to image using MPM for morphology examination in both groups. Since Rhodamine 123 (RH123) is a marker to measure P-glycoprotein (P-gp) transporter function, it was intravenously injected into control and AKI mice and imaged by MPM to evaluate the P-gp transporter function. Using a bolus injection of FITC labelled inulin, rapid quantification of glomerular filtration rate (GFR) was determined in both groups by directly imaging of inulin clearance from glomerulus. A LaVision Biotec Nikon MPM was used to image RH123 excretion from tubules. GFR was measured using a DermanInspect system equipped with the ultrashort (85 fs pulse width, 80 MHz repetition rate) pulsed mode-locked tunable Ti:sapphire laser (Mai Tai, Spectra Physics, 25 Mountain View, USA).

Results: The MPM images directly showed morphology changes in AKI mice compared to control group, where acute injury of tubular cells as indicated by reduced autofluorescence and cellular vacuolation (Fig.1). Intravital imaging showed that RH123 was rapidly excreted from tubules in control group but slowly eliminated from AKI model (Fig. 2), indicating P-gp transporter dysfunction in glycerol-induced AKI. As shown in Fig, 3, reduced glomerular permeability was also observed in AKI model, where FITC-labelled inulin (red color) was quickly cleared from glomerular at 30 mins after injection in control group, while fluorescence from FITC-labelled inulin was retained in glomerular in AKI model.

Conclusion: This advanced imaging technique can be used to rapid diagnosis and quantification of AKI induced morphology and functional changes.

Key words: Intravital imaging, Multiphoton microscopy, Morphology, Renal function, AKI


Xiaowen LIANG (Brisbane, Australia), Haolu WANG, Germain GRAVOT, Xin LIU, Michael ROBERTS
12:15 - 12:30 #6844 - LS08-OP032 Organelle changes in a Huntington’s disease model using cryogenic soft x-ray tomography.
Organelle changes in a Huntington’s disease model using cryogenic soft x-ray tomography.

Huntington’s Disease, a neurodegenerative disorder characterized by movement and executive function disruption, is linked to an expanded and unstable CAG trinucleotide repeat which translates as a polyglutamine (Q) repeat in the protein product. Healthy controls demonstrate a fairly broad range of trinucleotide repeats and 40+ repeats have been described as pathological. Due to this expansion, exon 1 of the Huntingtin protein is aberrantly processed by cellular machinery leading to an unintended cleavage product (mHTT). Aggregates of mHTT exon 1 have been found in mouse models and in patient brain [1].

PC-12 cells were used as an HD model to study structures of mHTT aggregates in a cellular context and to study cell morphology changes due to the presence of mHTT. These cells inducibly express a truncated version of mHTT exon 1 (97Qs) tagged with eGFP in the presence of Ponasterone A [2]. PC-12 cells expressing mHTT-GFP exon 1 were grown on gold finder grids, cryo-immobilised by plunge freezing, and imaged. GFP fluorescence was used to identify cells of interest prior to imaging in cryogenic soft x-ray tomography (SXT). SXT makes use of x-rays in the “water window” (2.4 nm wavelength, 500 eV) where common biological elements such as carbon and nitrogen absorb x-rays and are therefore more visible, whereas water (vitreous ice) is relatively transparent. This allows whole, fully-hydrated cells to be imaged at approximately 40 nm resolution without requiring sectioning or staining techniques.

Seven overlapping tilt series were collected with a 0.5° step size and a tilt range of ±60°, followed by reconstruction in IMOD [3]. Figure 1 shows one of the seven reconstructions, featuring a large nucleus with nucleolar features and a crowded cytoplasmic space. Segmentation of these features was completed using HISS (Hierarchical Interactive Super-region Segmentation) followed by annotation of cellular features based on their inherent properties (Figure 2). Cytoplasmic organelles were classified using specific characteristics of the data, such as the average intensity of the organelle, the size of the organelle, the variance of the voxels that make up the organelle and the location of the organelle in the 3D volume (Figure 3).

Using these characteristics, clumps of collagen, empty vesicles, lipid droplets and mitochondria were classified and visually inspected for accuracy. (Note: collagen was used to aid in cell adherence, but due to aggregation issues produced large clumps localized to the surface of the carbon substrate.) The group termed “other organelles” is likely composed of various compartments such as lysosomes, endosomes, filled vesicles, etc, which are not differentiable by eye in soft x-ray images.

Next, population statistics for each organelle class, such as the average and standard deviation of the class’s size, shape, intensity and variance will be used to describe the morphology of a non-perturbed cell, and the changes due to perturbations, in this case, the presence of mHTT aggregates. In the future, correlated cryo-fluorescence light microscopy and SXT will be used to verify mitochondria, and identify subgroups of the “other organelles” class, such as lysosomes and early and late endosomes.

Identification of organelle specific characteristics in SXT will allow the unambiguous classification of various organelles. As a whole, this methodology can broadly describe the effects of various cellular perturbations such as disease, infection or treatment in a whole cell context.

  1. Hatters, D.M., 2012. Putting huntingtin “Aggregation” in View with Windows into the Cellular Milieu. Curr Top Med Chem.
  2. Apostol BL, et al., 2003. A cell-based assay for aggregation inhibitors as therapeutics of polyglutamine-repeat disease and validation in Drosophila. Proc Natl Acad Sci USA. 100(10):5950–5955.
  3. Mastronarde, D.N., 1997. Dual-axis tomography: an approach with alignment methods that preserve resolution. J. Struct. Biol. 120:343-352.

Michele DARROW (Didcot, United Kingdom), Wei DAI, Patrick MITCHELL, Imanol LUENGO, Wah CHIU, Elizabeth DUKE
Salon Tête d'Or

"Tuesday 30 August"

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SCUR - IV
10:15 - 12:30

The Skin Imaging Society meeting
SLOT IV

10:15 - 11:05 Invited lecture 2: Syndecans in epidermal biology. Patricia ROUSSELLE (Invited speaker, LYON, France)
11:05 - 12:05 Session 4. Oral communications.
Salle Gratte Ciel 3
12:30

"Tuesday 30 August"

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EMAG
12:30 - 14:00

EMAG Meeting

Salle Prestige Gratte Ciel
14:00

"Tuesday 30 August"

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MS0-I
14:00 - 16:15

MS0: Nanoparticles: from synthesis to applications
SLOT I

Chairpersons: José CALVINO (Chairperson, Cadiz, Spain), Goran DRAZIC (Head of microscopy group) (Chairperson, Ljubljana, Slovenia), Christian RICOLLEAU (Professor) (Chairperson, C'Nano IdF, Paris, France)
14:00 - 14:30 #8382 - MS00-S62 Understanding of atomic structures of nanoparticles on surfaces.
Understanding of atomic structures of nanoparticles on surfaces.

Metallic nanoparticles occupy special places in fundamental research and practical applications, not only because they bridge the gap between atoms and bulk matter but more importantly because some fascinating phenomena appear only at nanoscale level. Research has shown that the properties of nanoparticles are strongly affected by their size, shape, chemical composition as well as their supports.  Hence it is essential to gain full knowledge of their three-dimensional atomic structures, which is still a challenging task for nanoclusters and nanoalloys. 

After a brief overview of the current status of structure research on clusters and nanoalloys, I will discuss what an aberration-corrected scanning transmission electron microscopy (STEM) can offer in this area through an atom counting approach. I will then present two case studies from our recent work: (1) on control and manipulation of the size and atomic structure of Au clusters, formed via gas phase condensation and deposited on amorphous carbon films and MgO(100) surfaces; and (2) on structures of TiO2(110) supported Au-Rh nanoalloys, prepared through solution based chemical synthesis method, under effects of various thermal treatments.  In both cases, direct evidence of atomistic details of the clusters, nanoalloys as well as nanoparticle-support interfaces will be presented and their possible mechanisms will be discussed, together with computer modeling studies. Our emphasis will be on understanding the relationship between nanoparticle structures and their thermodynamics or kinetics.


Ziyou LI (Birmingham, United Kingdom)
Invited
14:30 - 15:00 #8386 - MS00-S63 Nanoparticle Structure and Dynamics Studied Using Controlled Atmosphere Transmission Electron Microscopy.
Nanoparticle Structure and Dynamics Studied Using Controlled Atmosphere Transmission Electron Microscopy.

Nanoparticle and catalysis research makes extensive use of transmission electron microscopy (TEM). In particular, environmental transmission electron microscopy (ETEM) has attracted considerable attention in recent years. This technique allows us to expose samples to gaseous environments at elevated temperatures in order to investigate local structural changes at the atomic level as the environment changes. Recently, the technique has also been used in nanowire, graphene and electron optical lithography research among others.

Recent developments in TEM instrumentation include monochromation of the electron source and aberration correction of both condenser and objective lenses. These developments have now been introduced onto the ETEM column. The improved spatial resolution and interpretability provided by these additions are beneficial for imaging the surface structure and dynamics of catalyst nanoparticles and provides exciting new possibilities for investigating chemical reactions. In order to take full advantage of this, an understanding of both the interaction of fast electrons with gas molecules and the effect of the presence of gas on high-resolution imaging is necessary.

Using an FEI Titan ETEM equipped with a monochromator and an aberration corrector on the objective lens, we have investigated sintering of supported metal nanoparticles often used in catalysis. A model system consisting of supported gold nanoparticles were prepared by sputter-depositing the metal onto graphene and boron nitride substrates. These samples were imaged under hydrogen at increasing temperatures. Gas was introduced into the environmental cell using digitally controlled mass flow controllers providing accurate and stable control of the pressure in the cell. As the temperature was increased, migrating particles were observed on the support. As they came into contact, a neck was formed between the particles and subsequently, the particles coalesced entirely (Fig. 1). Growth patterns have also been investigated for platinum and palladium nanoparticles supported on silicon oxide substrates. Here, anomalously large particles were observed as the particles were sintered in oxygen atmospheres at temperatures at elevated temparatures. Such large particles have also been observed for industrial catalysts. In this study, we will try to elucidate the mechanisms of metal nanoparticle sintering.

The analytical capabilities of the microscope can be further augmented by adding stimuli such as optical or electrical though the sample holder. Using a holder capable of exposing the sample to light, the redox properties of cuprous oxide have been investigated. Cuprous oxide has been identified as an active catalyst for the water splitting and hydrogen evolution from an ethanol solution. However, Cu2O suffers from photocorrosion. This phenomenon was investigated using controlled atmosphere transmission electron microscopy. Fig. 2 shows how the photoinduced degradation of cuprous oxide to metallic copper under an aqueous atmosphere using bright-field imaging, electron diffraction and electron energy-loss spectroscopy. All three techniques show the transformation from oxide to metal.

Effects of imaging in various elemental as well as di-molecular gases and their effect on imaging and spectroscopy in the environmental transmission electron microscope will also be discussed.


Thomas Willum HANSEN (Kgs. Lyngby, Denmark)
Invited
15:00 - 15:15 #4573 - MS00-OP178 On the mechanism of metal-induced crystallization: an in situ TEM study of nanosized Au/Ge films.
On the mechanism of metal-induced crystallization: an in situ TEM study of nanosized Au/Ge films.

Thin crystalline germanium (c-Ge) and silicon (c-Si) films are widely used in current microelectronic and nanoelectronic devices, such as thin film transistors and highly efficient solar cells. However, Si or Ge films grown from the vapor phase are usually amorphous. Crystallization of such films requires annealing temperatures above 500°C, which are often incompatible with the fabrication processes used in industry. Yet, when a semiconductor film of amorphous germanium (a-Ge) or amorphous silicon (a-Si) is in contact with a metal that forms an eutectic phase diagram (e.g, Au, Ag, Al, Bi, Pd), the crystallization temperature of the amorphous film is reduced significantly. This effect is commonly known as “metal-mediated” or “metal-induced crystallization” (MIC). Despite numerous studies of the MIC effect, the reaction mechanism is still unclear, although the interaction at the interface between metal and semiconductor seems to play a key role in activating the process. In this context, the main motivation of the current work is to understand the mechanism of metal-induced crystallization of semiconductor films in eutectic binaries by studying the interfacial interactions in these systems. Layered films formed by the sequential condensation of components in vacuum are a convenient model system, since the thickness of the film or the size of particles is comparable with the width of the interface boundary in a binary system. By heating such a system in a transmission electron microscope,  the interaction between the metal and the semiconductor film can be observed directly in real time.

 

We have selected gold-germanium (Au-Ge) films as a model system. Layered Au/Ge films are prepared by the condensation of an amorphous continuous film of Ge of 5 nm, followed by the deposition of a 0.2-0.3 nm Au film on top of the Ge film. KCl crystals covered by an arc-deposited 5 nm carbon layer prior to the deposition of Ge and Au are used as a substrate. The structure and morphology of the films were studied in situ in a FEI TECNAI G2 F20 X-TWIN transmission electron microscope within the 20-400°C range with a Gatan 652 Double Tilt Heating Holder. It has been shown that the process of solid state de-wetting of a 0.2-0.3 nm Au films occurs in the 150-200°C temperature range and results in an a-Ge film uniformly covered with Au nanoparticles with an equivalent diameter of 4.4 nm. The eutectic melting of these Au nanoparticles occurs at temperatures 200-250°C and is accompanied by both an abrupt change of the film morphology and crystallization of the a-Ge film. Long-term annealing of the film at a temperature below the eutectic point does not lead to a change in the mean particle size or to the appearance of c-Ge. Instead, the capillary motion of liquid eutectic particles on Ge surface has been observed (Fig. 1). At higher temperatures, this process intensifies and the motion of the particles becomes visible directly by TEM. This effect leads to the crystallization of a whole surface of amorphous germanium film and causes a drastic change in the Au film morphology. In addition, the formation of metastable fcc Ge phase is found and is shown to drive the capillary motion of eutectic particles. Fig. 2 shows TEM images of the same area of the film taken at 370°C with an interval of 10 seconds between each image. From Fig 2a to Fig 2b, it is evident that the eutectic nanoparticles move, leaving c-Ge behind. However, a more detailed examination of the HRTEM images of the crystalline Ge film shown in Figure 2 exhibit an unexpected feature. In particular, the Fast Fourier Transform (FFT) of region I in Figure 2a, which corresponds to a beam direction of B=[110], shows forbidden reflections for the diamond structure, namely {200} type planes (d=0.283 nm). The appearance of such reflections seems to indicate the crystallization of germanium into a metastable fcc phase, which is then converted into the diamond structure.


Aleksandr KRYSHTAL (Krakow, Poland), Alexey MINENKOV, Paulo FERREIRA
15:15 - 15:30 #6475 - MS00-OP190 The Determining Role of Solution Chemistry in Radiation-Induced Nanoparticles Synthesis in the STEM.
The Determining Role of Solution Chemistry in Radiation-Induced Nanoparticles Synthesis in the STEM.

In the last decades, radiolytic synthesis routes have exploited the chemical effects of the absorption of high-energy radiation on precursor solutions, to form nanostructures by reproducing a selective reducing/oxidizing environment. Radiation chemical synthesis provides a powerful means to form nuclei which are homogeneously distributed in the whole volume and where the growth rate can be easily controlled.[1] The latter has recently been achieved using liquid cell electron microscopy, with examples of formation kinetics of particles in polar (water)[2] and non-polar (toluene)[3] solvents following a linear relation with applied dose rate. Fine control of particles size with conventional radiation sources typically requires increasing the production of radicals (thus applying “high doses”). On the contrary, the challenge in the scanning transmission electron microscope (STEM), where incident doses are inherently higher by orders of magnitude, is to reduce drastically such production. To illustrate this, we recently proposed the use of non-polar systems (toluene), which are not typically used for radiolytic synthesis outside the STEM, as a solvent that produces much lower amount of radiolytic ionic species upon electron irradiation, as compared to water or other polar solvents such as alcohols (Figure 1 shows an example of

 

Thus far, most experiments in the liquid cell involved the use of water as a solvent, which explains the large amount of work dedicated to understanding the effects of the electron beam in aqueous conditions. Radiation chemical yields in water are large due to the relatively low bond energies in water molecules, meaning highly reactive oxidizing and reducing radicals and species are created in about an equal amount.[4] Reproducing net reducing conditions for nanoparticle growth can be achieved with the addition of substances that convert primary radicals into free reducing radicals (using OH· scavengers, for instance). The use of organic solvents in the liquid cell allows for tuning the polarity of the medium, giving access to a broader range of synthesis conditions but producing more complex radiolytic products. Here I will discuss, revisiting a number of examples from the literature and presenting our most recent work, general methods for finding more suitable synthesis environments for controlled nanoparticles formation in the liquid cell. Much of the presentation will focus on the solvent radiolysis which is what predominantly dictates the species and yields involved in the chemical processes leading to nanostructure synthesis.[4]

 

References:

[1] J. Belloni, Catal. Today, 2006, 113, 141-156; S.-H. Choi et al., Colloids Surf., A, 2005, 256, 165-170; J. Belloni et al., New J. Chem., 1998, 22, 1239-1255; M. A. J. Rodgers and Farhataziz, Radiation Chemistry: Principles and Applications, VCH Publishers, New York, N.Y. , 1987.

[2] D. Alloyeau et al., Nano Lett., 2015, 15, 2574-2581; J. H. Park et al., Nano Lett., 2015, 15, 5314-5320.

[3] P. Abellan et al., Langmuir, 2016, 32, 1468-1477.

[4] SuperSTEM is the UK EPSRC National Facility for Aberration-Corrected STEM, supported by the Engineering and Physical Science Research Council (PA). Part of this work was supported by the Chemical Imaging Initiative, under the Laboratory-Directed Research and Development Program at Pacific Northwest National Laboratory (PNNL) and by the US Department of Energy, Office of Science, Office of Basic Energy Sciences, and was performed in part using the facilities located in the William R. Wiley Environmental Molecular Sciences Laboratory, a DOE national scientific user facility sponsored by the DOE’s Office of Biological and Environmental Research and located and the PNNL. PNNL is operated by Battelle for DOE.


Patricia ABELLAN (Daresbury, United Kingdom), Ilke ARSLAN, Naila AL HASAN, Nigel D. BROWNING, James E. EVANS, Jay W. GRATE, Ayman M. KARIM, Ivan T. LUCAS, Trevor H. MOSER, Lucas R. PARENT, Chiwoo PARK, Taylor J. WOEHL
15:30 - 15:45 #6303 - MS00-OP187 Advanced Electron Tomography of Assemblies of Nanoparticles.
Advanced Electron Tomography of Assemblies of Nanoparticles.

Nano assemblies are two- or three-dimensional (3D) collections of nanoparticles. The properties of the assemblies are determined by the number of particles, their position, shape and chemical nature as well as the bonding between them. If we are able to determine these parameters in 3D, we will be able to provide the necessary input for predicting the properties and we can guide the synthesis and development of new assemblies or superstructures. A detailed structural characterization is therefore of utmost importance.

Electron tomography is a versatile and powerful tool that has been increasingly used in the field of materials science. Also for the investigation of nanoassemblies, electron tomography has been of high value as illustrated in Figure 1 [1-3]. However, to extract quantitative information, optimization of the electron tomography experiment is required, especially for large assemblies or assemblies consisting of more than one type of nanoparticle. Here, we will show how advanced electron microscopy,  in combination with novel reconstruction algorithms, enables us to determine the number of particles, their stacking, interparticle distances and outer morphology. This will be illustrated for very large assemblies consisting of spherical nanoparticles [4], assemblies that contain anisotropic particles (Figure 2) and binary assemblies (Figure 3) consisting of particles with different sizes or different compositions [5,6].

Going a step further is the investigation of self assembly and oriented attachment at the atomic scale. Using annular bright field scanning transmission electron microscopy, the possible effect of polarity can be investigated, whereas high angle annular dark field scanning transmission electron microscopy in combination with advanced computational techniques enables the investigation of the interfacial planes in two-dimensional superlattices from nanocrystals [7]. Finally, we will discuss the use of exit wave reconstructions to investigate the effect of surface ligands on self assembly.

[1] S. Bals, B. Goris, L.M. Liz-Marzán, G. Van Tendeloo, Angewandte Chemie 53 (2014) 10600

[2] T. Altantzis, B. Goris, A. Sánchez-Iglesias, M. Grzelczak, L.M. Liz-Marzán, S. Bals, Particle and Particle Systems Characterization 30 (2013) 84

[3] M.P. Boneschanscher, W. Evers, J.J.Geuchies, T. Altantzis, B. Goris, F.T. Rabouw, S.A.P. van Rossum, H.S.J. van der Zant, L.D.A. Siebbeles, G. Van Tendeloo,I. Swart, J. Hilhorst, A. Pethukov, S. Bals, D. Vanmaekelbergh, Science 344 (2014) 1377

[4] D. Zanaga, F. Bleichrodt, T. Altantzis, N. Winckelmans, W.J. Palenstijn, J. Sijbers, B. de Nijs, M.A. van Huis, A. Sánchez-Iglesias, L.M. Liz-Marzán, A. van Blaaderen, K.J. Batenburg, S. Bals, G. Van Tendeloo, Nanoscale 8 (2016) 292

[5] M. Grzelczak, A. Sanchez-Iglesias, L. M. Liz-Marzán, Soft Matter 9 (2013) 9094-9098

[6] T. Altantzis, Z. Yang, S. Bals, G. Van Tendeloo, M.-P. Pileni, Chemistry of Materials 28 (2016) 716

[7] E. Javon, M. Gaceur, W. Dachraoui, O. Margeat, J. Ackermann, M. Ilenia Saba, P. Delugas, A. Mattoni, S.Bals, G. Van Tendeloo, ACS Nano 9 (2015) 3685

Acknowledgements

S.B., D.Z. and N.C. acknowledge financial support from European Research Council (ERC Starting Grant # 335078-COLOURATOMS). The research leading to these results has received funding from the European Union Seventh Framework Programme under Grant Agreements 312483 (ESTEEM2). 


Sara BALS (Antwerpen, Belgium), Thomas ALTANTZIS, Daniele ZANAGA, Bart GORIS, Nathalie CLAES, Gustaaf VAN TENDELOO
15:45 - 16:00 #6757 - MS00-OP196 Electron Microscopy of Copper Nanoparticle Growth.
Electron Microscopy of Copper Nanoparticle Growth.

Understanding processes leading to the formation of nanoparticles is of utmost importance for tailoring their size, shape and spatial arrangements, which are crucial for the nanoparticles’ use in heterogeneous catalysis. As the nanoparticle growth involve processes at or across atomic surfaces, observation made in situ at high-spatial resolution would be beneficial for elucidating the nanoparticle growth mechanism. In recent years, transmission electron microscopy (TEM) has become a powerful technique for studying nanoparticles. With TEM, individual nanoparticles can be observed at atomic-resolution and in reactive gas environments [1]. This capability opens up new possibilities for uncovering dynamics of nanoparticles immersed in gas environments. Here, we employ such in situ TEM capabilities to study the growth of Cu nanoparticles supported on SiO2 by the reduction of a homogeneous precursor consisting of Cu phyllosilicate platelets (Fig. 1) [2, 3]. The homogeneous precursor represents an important class of industrial catalyst precursor material for which local TEM observations can directly be related to the catalyst at a macro-scale.

By monitoring the individual nanoparticles over time, quantitative information about the nucleation time and size evolution of the Cu nanoparticles were obtained from TEM image series (Fig. 2). To employ such quantitative data in a kinetic description of the reduction process, it is imperative to reduce the influence of the electron beam on the process to a negligible level. To achieve that, we developed a low dose-rate TEM imaging procedure in which several regions of the sample was monitored in parallel in a dose-fragmentated way [1,4,5,6].  This strategy allows for a direct evaluating of the role of the electron dose-rate, accumulated dose and dose history, which were all found to play a role on the growth process (Fig. 1C). Based on this evaluation, the role of the electron beam was quantitatively assessed and used to pinpoint illumination conditions that allowed the observation of the inherent thermal reduction process.

In view of this detailed analysis, quantitative data were extracted from the time-resolved TEM image series to describe the thermally induced growth of the Cu nanoparticles supported on SiO2 (Fig 1B). By comparing the quantitative TEM data of the process with kinetic models, it was found that the growth process was best characterized as an autocatalytic reaction with either diffusion- or reaction-limited growth of the nanoparticles. This finding is significant because the autocatalytic reaction limits probability for secondary nucleation and because the platelike precursor structure restricts the diffusion. This describes a way to synthesize nanoparticles with well-defined sizes, which in turn offers a more stable catalyst[7]. In this way, in situ observations made by electron microscopy provide mechanistic and kinetic insights that can guide the formation of metallic nanoparticles for catalytic applications in a rational way.

References: 

[1] S. Helveg, J. Catal. 328, 102 (2015)

[2] R. van den Berg et. al., J. Am. Chem. Soc. 138, 3433 (2016)

[3] R. van den Berg et. al., Catal. Today (2015)

[4] C. Holse et. al., J. Phys. Chem. 119, 2804 (2015)

[5] J. R. Jinschek and S. Helveg, Micron 43, 1156 (2012)

[6] S. Helveg et. al., Micron 68, 176 (2015)

[7] S. B. Simonsen et. al., J. Am. Chem. Soc. 132, 7968 (2010)


Christian F. ELKJÆR (Kgs. Lyngby, Denmark), Roy VAN DEN BERG, Cedric J GOMMES, Ib CHORKENDORFF, Jens SEHESTED, Petra E. DE JONGH, Krijn P. DE JONG, S HELVEG
16:00 - 16:15 #6872 - MS00-OP197 In situ TEM measurements of mechanical properties of individual spherical BN nanoparticles of different morphologies.
In situ TEM measurements of mechanical properties of individual spherical BN nanoparticles of different morphologies.

Boron nitride (BN) nanostructures exhibit excellent mechanical properties. For example, the in situ tensile tests on individual BN nanotubes (BNNTs), which were conducted in situ in a transmission electron microscope (TEM) column, demonstrated the strength and Young’s modulus of ~33 GPa and ~1.3 TPa, respectively [1].Such superb mechanical properties of BN nanostructures make them very attractive materials as a reinforcement phase in lightweight composites. Besides nanotubes, nano-BN can be obtained in the form of spherical nanoparticles (BNNPs) with different morphologies – solid or hollow, with smooth or rough surfaces. High electrical and chemical resistance, thermal stability and biocompatibility of BNNPs were reported but their mechanical properties have not been detailed yet.

BNNPs in the present study were synthesized by CVD technique. By changing technological parameters of CVD process particles of various morphologies were obtained. For each type of individual BNNPs in situ compression tests were accomplished in a TEM column. As-synthesized BNNPs were dispersed in acetone and the suspension was placed onto a Si wafer. The truncated cone-like shape indenter with a diameter of top circle of 1 μm was used. Elastic moduli were determined for all tested particles. The obtained results (Fig. 1) show that the high strength enables the hollow spherical BNNPs to withstand a considerable compressive deformation before failure (up to 50% of the hollow particle diameter). The structures also demonstrated a high percentage of elastic recovery.

1. X.L. Wei, M.S. Wang, Y.Bando, D.Golberg, “Tensile tests on individual multiwalled boron nitride nanotubes,” Adv. Mater. 22 (2010), 4895-4899.


Konstantin FIRESTEIN (Moscow, Russia), Alexander STEINMAN, Irina SUKHORUKOVA, Andrey KOVALSKII, Andrei MATVEEV, Dmitri GOLBERG, Dmitry SHTANSKY
Amphithéâtre

"Tuesday 30 August"

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IM2-IV
14:00 - 16:15

IM2: Micro-Nano Lab and dynamic microscopy
SLOT IV

Chairpersons: Francisco José CADETE SANTOS AIRES (Chairperson, VILLEURBANNE CEDEX, France), Niels DE JONGE (Chairperson, Saarbrücken, Germany), Gerhard DEHM (Chairperson, Düsseldorf, Germany)
14:00 - 14:30 #8433 - IM02-S37 Enabling and doing structural biology in situ.
Enabling and doing structural biology in situ.

To visualize and analyse molecular structures in their native state and in their cellular context is the overarching aim of in situ structural biology. In the classical structural biology approach purified molecules are investigated isolated from their ‘neighbours’, far from the intricate macromolecular interaction network and thus disentangled from the cellular factory. We have seen stunning results of such isolated molecular structures at atomic or near-atomic resolution obtained by single-particle cryo-electron microscopy (cryo-EM), a direct result of the development and exploitation of direct electron detection devices. However, many supra- and macromolecular assemblies involved in key cellular processes cannot be studied in isolation; their function is so deeply rooted in their cellular context that it is impossible to isolate them without disrupting their structural integrity. Thus the challenge for us now is to apply cryo-EM to protein complexes and other biological objects within their native environment, namely within cells [1,2].

The biggest obstacle in obtaining high-resolution three-dimensional (3D) information on the cellular level is the sample thickness. Resolution scales with thickness in transmission electron microscopy (TEM) and thus minimal invasive preparation methods are needed for several micrometer-sized specimens (e.g. mammalian cells). Cryo-focused ion beam milling or more general FIB micromachining is an alternative to traditional preparation methods. It allows the fabrication of self-supported lamellae, suitable for high-resolution cryo-electron tomography (cryo-ET) studies [3]. These lamellae open up ‘windows’ to the cellular interior, covering tens of square micrometers. They are electron transparent and ‘thin enough’ to obtain molecular resolution information in the cellular context. However, the fidelity with which macromolecules can be visually identified in cryo-electron tomograms is not only related to sample thickness, but on the characteristic ‘material properties’ of the biological samples. Living cells are inherently crowded, but the degree of molecular crowding can vary greatly from one cell type to another (e.g. yeast is denser than algae) and between different regions within a single cell (e.g. the nucleoplasm is denser than the cytoplasm). Thus, a compromise has to be found between what details one would like to see and how big the final tomographic volume should be. Moreover the volume represented in a typical FIB lamella is only a very small fraction of the cell. Retaining low-abundance and dynamic subcellular structures or macromolecular assemblies within such limited volumes requires precise targeting of the FIB milling process. This fact necessitates the introduction of correlative light and electron microscopy (CLEM) in all three dimensions [4]. Together, a sample’s thickness, molecular crowding and the accuracy with which structures can be targeted will ultimately determine the level of detail that can be resolved by cryo-ET.

Here, we present our approaches towards in situ structural biology, - capturing three-dimensional structure within cells at high resolution, unaltered by sample preparation. We will give an overview on recent advances in sample preparation, data collection and data processing, including technology for FIB milling, correlative light and electron microscopy, phase plate imaging and direct electron detection. We demonstrate that these developments can be used in a synergistic manner to produce 3D images of mammalian cells in situ of unprecedented quality, allowing for direct visualization of macromolecular complexes and their spatial coordination in unperturbed eukaryotic cellular environments.

[1] Mahamid J. et al. Science 2016, 351 (6276), 969-972.

[2] Engel BD. et al. PNAS USA 2015, 112 (36): 11264–11269.

[3] Rigort A. and Plitzko JM. Archives of Biochemistry and Biophysics 2015, 581: 122-130.

[4] Arnold J. et al. Biophysical Journal 2016, 110 (4): 860–869.


Juergen PLITZKO (Martinsried, Germany), Julia MAHAMID, Benjamin ENGEL, Sahradha ALBERT, Miroslava SCHAFFER, Jan ARNOLD, Yoshiyuki FUKUDA, Maryam KHOSHOUEI, Radostin DANEV, Wolfgang BAUMEISTER
Invited
14:30 - 14:45 #7069 - IM02-OP079 Studying biological samples in their native liquid environment using electron microscopy.
Studying biological samples in their native liquid environment using electron microscopy.

It is now possible to study biological systems (e.g. eukaryotic cells) at nanometer spatial resolution in their native liquid environment using electron microscopy [1-3]. In contrast to conventional procedures, these new methods do not involve complex preparation steps like embedding, cutting, or freeze-sectioning. It is further possible to minimize negative drying artifacts by adjusting experimental conditions that represent the native state as close as possible, i.e. the presence of water. Several different approaches meeting these requirements have been developed to study whole cells of different sizes:

Method 1: Two silicon microchips with electron transparent windows can be used to realize a microfluidic chamber that is sealed from the vacuum in the electron microscope (Figure 1). The chamber between the two microchips is thick enough to contain whole cells, yet thin enough to ensure a sufficient transmission of electrons. It is further possible to create bubbles in the liquid cell compartment by inducing a high density of electron dose on the sample. This increases the obtained contrast due to the minimized amount of scattering solvent. The liquid cell compartment can be used in a standard Transmission electron microscope (TEM). Method 2: Environmental scanning electron microscopy (ESEM) can be used to study cells covered in a thin layer of liquid surrounded by a saturated water atmosphere. The thickness of the liquid layer is controlled by adjusting the temperature and the environmental pressure within the vacuum chamber. Method 3: The wet sample is attached to an electron transparent support (e.g. graphene, carbon, silicon nitride) and covered with a thin membrane (e.g. mono or multilayer graphene) to realize a thin layer of liquid around the sample [4]. This method allows for high resolution imaging as the amount of solvent is reduced to a minimum. It can be used in any conventional TEM and SEM with scanning transmission electron microscopy (STEM) detection. The presence of water can be confirmed by beam-induced bubbles.

Each of these three methods can be used to study the location and stoichiometry of transmembrane proteins within the intact plasma membrane [2, 3] with relevance to cancer research [5]. Nanoparticles, specifically attached to proteins, provide enough contrast for imaging (Figure 2).  Also correlative light- and electron microscopy is readily possible, so that large numbers of cells can be screened, while selected regions can be studied with high resolution [5].

References:

[1]       de Jonge, N., Peckys, D.B., Kremers, G.J., Piston, D.W. Proc Natl Acad Sci 106, 2159-2164, 2009.

[2]       Peckys, D.B., Baudoin, J.P., Eder, M., Werner, U., de Jonge, N., Scientific reports 3, 2626, 2013.

[3]       Peckys, D.B., de Jonge, N., Microscopy and microanalysis 20, 346-365, 2014.

[4]       Walker, M. I.; Weatherup, R. S.; Bell, N. A. W.; Hofmann, S.; Keyser, U. F. Appl. Phys. Lett. 2015, 106, 023119.

[5]       Peckys, D.B., Korf, U., de Jonge, N., Sci Adv 1, e1500165, 2015.

Acknowledgements: We thank E. Arzt for his support through INM.  Research in part supported by the Leibniz Competition 2014. R.S.W. acknowledges a Research Fellowship from St. John’s College, Cambridge and a Marie Skłodowska-Curie Individual Fellowship (Global) under grant ARTIST (no. 656870) from the European Union’s Horizon 2020 research and innovation programme.


Justus HERMANNSDÖRFER (Saarbrücken, Germany), Robert WEATHERUP, Stephan HOFMANN, Niels DE JONGE
14:45 - 15:00 #6123 - IM02-OP062 Environmental tomography of liquid latex suspensions in STEM.
Environmental tomography of liquid latex suspensions in STEM.

 

   ESEM (Environmental Scanning Electron Microscopy) allows the observation of liquids under specific conditions of pressure and temperature. Moreover, when working in the transmission mode, i.e. in STEM (Scanning Transmission Electron Microscopy), nano-objects can be analyzed inside a liquid. Those acquired images are quite similar to those obtained in TEM (Transmission Electron Microscopy) using a closed cell [1]. By implementing a Peltier stage in the tomography device which was developed for the characterization of the 3D structure of non-conductive and low-contrast materials [2], the acquisition of image series of wet samples (wet-STEM tomography) [3]. Moreover, in situ evaporation of water can be performed to study the materials evolution from the wet to the dry state.

  In our experiment, SBA-PMMA, a copolymer derived from styrene and metacrylic acid esters in aqueous solution, is chosen as the sample. A 3% PMMA shell, which plays the role of steric surfactant, has already included in the SBA particles. Some other surfactants can be introduced to further stabilize the latex for some special applications [4].

  We first present measurements of the sample temperature using different experimental conditions, to show that the sample can be preserved in the dry state. Then, we show series of tilted images that are acquired during in situ hydration / dehydration experiments. Reconstructed volumes are obtained using the image processing softwares etomo and Fiji (see Figure 1), and the resolution is calculated using Fourier Shell Correlation (FSC). The influence of irradiation damage on the reconstructed volumes are discussed.

  Afterwards, the volumes are segmented (see Figure 2) and quantified to follow the evolution of the microstructural parameters during water evaporation.  This shows the potentialities of wet-STEM tomography for the characterization of suspensions from the wet to the dry state.

 

[1] de Jonge, N., Ross, F.M. Nature Nanotechnology, 6, 695-704 (2011)

[2] Jornsanoh, P. Ultramicroscopy, 111, 1247-1254(2011)

[3] Masenelli-Varlot, K., Malchère, A. Microscopy and Microanalysis, 20, 366-375(2014)

[4] Faucheu, J., et al. Langmuir, 25, 10251-10258(2009)

Acknowledgements

The authors acknowledge the Consortium Lyon-Saint Etienne de Microscopie (CLYM) for the access to the microscope, the China Scholarship Council (CSC) and Institut Universitaire de France for financial support.


Juan XIAO (VILLEURBANNE), Lucian ROIBAN, Genevieve FORAY-THEVENIN, Karine MASENELLI-VARLOT
15:00 - 15:15 #6311 - IM02-OP065 IN-SITU TRANSMISSION ELECTRON MICROSCOPY ON OPERATING ELECTROCHEMICAL CELLS.
IN-SITU TRANSMISSION ELECTRON MICROSCOPY ON OPERATING ELECTROCHEMICAL CELLS.

Solid oxide cells (SOC) have the potential of playing a significant role in the future efficient energy system scenario. In order to become widely commercially available, an improved performance and durability of the cells has to be achieved [1]. Conventional scanning and transmission SEM and TEM have been often used for ex-situ post mortem characterization of SOFCs and SOECs [2,3]. However, in order to get fundamental insight of the microstructural development of SOFC/SOEC during operation conditions in-situ studies are necessary [4]. The development of advanced TEM chips and holders makes it possible to undertake analysis during exposure to the SOFC/SOEC sample of reactive gas flow, elevated temperatures and electrical biasing in combination. This allows the study of nanostructure development under temperature and electrode polarisation conditions similar to operation conditions.

In this work, we have for the first time performed in-situ analysis of a symmetric cell inside a TEM under different configurations. In order to be able to perform in-situ experiments while drawing a current through the sample, we used a homemade TEM chip [5,6] and an 80-300kV Titan ETEM (FEI Company) equipped with an image corrector and a differential pumping system.

A symmetric cell was prepared by depositing a cell consisting of three thin films on a strontium titanate (STO) single crystal substrate by pulsed laser deposition (PLD). Lanthanum strontium cobaltite La0.6Sr0.4CoO3-δ (LSC) was chosen as electrode and yttria stabilized zirconia ZrO2: 8% mol Y2O3 (YSZ) as electrolyte, see figure 1. High resolution TEM analysis on PLD samples after the deposition, did not reveal any second phase formation at the interface between YSZ and LSC. The in-situ experiment was firstly conducted in vacuum at temperature between 25 oC and 900 oC. Secondly, it was repeated in presence of oxygen with an oxygen partial pressure of about 2 mbar and a maximum temperature of 750 oC. Subsequently, the symmetric cell will be exposed to oxygen at 600 oC and 1 V overpotential within the ETEM. In order to do that, a symmetric cell has been placed on the chip with the use of a focus ion beam (FIB) microscope, see figure 2. To do so, a lamella was first extracted by the bulk sample and attached to a conventional TEM grid. Afterwards, the grid was tilted by 90 degrees and the lamella was detached once again and placed on the chip.

 STEM-EDS investigation was used for ex-situ post mortem analysis. Finally, a bulk symmetric cell, coming from the same batch as the in-situ treated TEM samples, was tested in a furnace with similar environmental conditions. This comparison is vital for distinguishing possible surface diffusion effects caused by having a thin lamella for in-situ TEM analysis. Electrochemical properties were also investigated by electrochemical impedance spectroscopy (EIS).

In the figure 3 the cell was heat treated at 400 oC in vacuum, whereas in figure 4, the cell was treated at the same temperature but in presence of oxygen, with PO2 of 2 mbar. Comparing the two figures, the cell exposed to oxygen showed structural changes in the LSC thin film in comparison with the sample heated in vacuum. These changes refer to the formation of grains as is confirmed by electron diffraction patterns.

 

[1] A. Atkinson et al., Nature Materials 2004, 3, 17-27.

[2] R. Knibbe et al., Journal of The Electrochemical Society 2010, 157, B1209-B1217.

[3] N. Imanishi et al., Solid State Ionics 2006, 177, 2165-2173.

[4] M. L. Traulsen et al., ECS Transactions 2015, 66, 3-20.

[5] C. Kallesøe et al., Nano Letters 2012, 12, 2965-2970.

[6] S. B. Alam et al., Nano Letters 2015, 15, 6535-6541.


Fabrizio GUALANDRIS (Roskilde, Denmark), Søren Bredmose SIMONSEN, Mogens Bjerg MOGENSEN, Kristian MØLHAVE, Simone SANNA, Jakob Birkedal WAGNER, Luise Theil KUHN
15:15 - 15:30 #6348 - IM02-OP067 On the applicability of electron diffraction to precisely measure temperature in TEM.
On the applicability of electron diffraction to precisely measure temperature in TEM.

With the overwhelming success of in situ electron microscopy, fueled by the recent advances in instrumentation, an everlasting question in electron microscopy comes into focus again: the precise determination of the temperature of the sample, especially in in situ heating experiments [1]. So far temperature is determined by sensors (thermocouples, resistance thermometers) placed close to the sample. In this work we elaborate on the applicability of parallel beam electron diffraction in TEM to precisely measure temperature directly on the sample and on a local scale.

 

Well defined metallic particles are applied on the sample surface using a dewetting process after thin film deposition. SAED is used to determine the lattice spacing from ring patterns averaging over a large number of particles. The determined lattice spacing can be translated into temperature using reference data on thermal expansion. To test the performance of this approach, a MEMS-based sample heating system from DENSsolutions is used inside of a double corrected FEI Titan Themis³ 300. Various metals (Ag, Au, Pt) are used to cover different temperature ranges. Fig. 1 shows image and diffraction pattern of a typical setup.

 

To allow for the highest precision, a proper alignment of the microscope is crucial. Therefore a method to assure perfect beam parallelity has been developed in this project, based on the change in diffraction pattern upon changing the sample position relative to the eucentric height. The accuracy of the evaluation based on peak fitting to the azimuthally averaged radial profile critically depends on the determination of the center and correction of astigmatism in the ring pattern. An algorithm has been employed allowing for correction of the astigmatism to the fourth order in the ring pattern (exemplarily shown in Fig. 2). The error due to the evaluation method can be estimated from the results of the evaluation of 100 subsequent diffraction patterns at a constant temperature shown in Fig. 3. The position of the (220) ring of Pt is determined to be 7.27183 ± 0.00023 nm-1 (corresponding to a temperature accuracy of approximately ± 3.5 K).

 

The temperature accuracy can be tailored to the particular application by selecting a different metal. Low melting metals show a higher thermal expansion increasing the sensitivity of the temperature measurement, but, on the other hand, limiting the maximum usage temperature because of melting or sublimation. Fig. 4 demonstrates the applicability of the presented approach. Ag particles have been used to measure the temperature during a dynamic in situ experiment, showing a very good agreement with the temperature reading from the holder.

 

Acknowledgement:

Financial support by the German Research Foundation (DFG) via research training group GRK 1896 “In-situ microscopy with electrons, X-rays and scanning probes” and cluster of excellence EXC 315 “Engineering of advanced materials” is gratefully acknowledged.

 

[1] F. Niekiel, P. Schweizer, S.M. Kraschewski, B. Butz, E. Spiecker, Acta Mater. 90 (2015), pp. 118-132


Florian NIEKIEL (Erlangen, Germany), Simon M. KRASCHEWSKI, Julian MÜLLER, Benjamin BUTZ, Erdmann SPIECKER
15:30 - 15:45 #6422 - IM02-OP068 Dynamical Holographic Moirés : Time average holographic interferometry.
Dynamical Holographic Moirés : Time average holographic interferometry.

Electron holography (EH) enable a sensitivity to electromagnetic fields at the nanoscale in a Transmission Electron Microscope (TEM) through the Aharonov-Bohm effect (which was by far experimentally demonstrated with EH [1]).  Beside EH we consider here the Moirés pattern than can arise with the fringe network of a hologram. Moirés originate from a superposition of two networks  and their use in electron microscopy enable to reveal hidden details within crystal stacks (from stacking faults in crystals to graphene misalignments).

The technique presented in this contribution propose to reach one step beyond the sensitivity that is actually achieved in EH by combining it with Moirés. The basic idea of what we call Dynamical Holographic Moirés (DHM) is to superpose various and controlled states of the sample under observation within the same out-of-axis hologram giving rise to the apparition of Moirés in a holographic interferogram. Holographic interferometry was initially designed in optics [2] and then implemented in its double exposure at the beginning of electron holography development. Our approach can be described as the implementation of time-average holographic interferometry by an application of in situ experiment with EH.

The system in use here is a Hard Disk Drive writing head that has been mounted to be characterized in operando by EH [3]. We can easily switch the writing pole state between two different states and thus reverting the magnetic flux sense. The DHM method [4] was thus used to fully characterize the magnetic flux escaping from such a magnetic pole in a quantitative way. By far, the obtained interferogram are directly quantized in term of magnetic flux quantum () linked to phase shift via the Aharonov-Bohm effect. A typical phase image of the system along with an interferogram are displayed in Fig 2. The main advantages of this new TEM technique, namely frequential analysis, electron optic distorsion and disturbed reference problem or direct quantification, will be discussed.

References :

[1]            Tonomura A.  Rev. Mod. Phys. 59, 639–669 (1987)
[2]            Heflinger, L. O.  et al.  Journal of Applied Physics 37, 642–649 (1966)
[3]            Einsle, J. F. et al.   Nano Res. 1–9 (2014)
[4]            Gatel, C. et al.   Under review


Christophe GATEL, Aurélien MASSEBOEUF (Toulouse), Florent HOUDELLIER, Etienne SNOECK
15:45 - 16:00 #5954 - IM02-OP061 Atoms in Motion: Electron beam induced dynamics in experiment and simulation.
Atoms in Motion: Electron beam induced dynamics in experiment and simulation.

With the availability of aberration-correctors, scanning transmission electron microscopy (STEM) has become one of the most versatile tools for the characterization of nanostructured materials. In combination with electron energy loss spectrometers (EELS) and energy dispersive X-ray (EDX) detectors in principle chemical information can be extracted at atomic resolution. Due to the high current densities occurring in a highly focused electron beam, however, STEM has to be classified as destructive method in many cases.[1] This is especially true for small metallic clusters with a high percentage of low-coordinated atoms, which are interesting in particular for heterogeneous catalysis.

In this work electron beam induced dynamics was studied via transient STEM HAADF image sequences for different nanostructured material systems like bimetallic alloys and clusters. All clusters were synthesized by means of the superfluid helium droplet method, which guarantees their high purity.[2] Furthermore, we present a methodology for the simulation of elastic electron damage processes using an algorithm based on molecular dynamics and Monte Carlo techniques.[3] Figure 1a shows simulation results for a bimetallic AuAg-cluster which exhibits selective Ag-sputtering and a rapid change of morphology during electron radiation. In Figure 1b HAADF image time series of an Au-CrOx core-shell nanowire can be seen. Due to electron beam enhanced diffusion of Au atoms in CrOx, significant morphology changes of the Au core can be observed after a few seconds of electron beam exposure, even at 60 keV electron energy.

Deeper understanding of electron beam induced dynamics can not only help to develop strategies to prevent sample damage, which is important especially for analytical and quantitative STEM analysis. Electron induced motion of single atoms on the surface or inside crystalline materials may also be useful to estimate surface energies, analyse defect generation and investigate diffusion processes.[4,5] Figure 1c shows the electron beam mediated diffusion of Au atoms on and inside an Al-matrix, for instance.

Moreover, electron beam induced chemical reactions can be used to tailor nanostructures with properties not obtainable otherwise. We show how Ni clusters transform into single crystalline, hollow and toroidal NiO clusters, consisting of less than 3000 Ni atoms, during electron exposure (see Figure 1d and e). The transformation is mediated by adsorbed water and driven by a nanoscale Kirkendall effect. We studied the oxidation process via HAADF time-lapse series and EELS analysis.

                                                                                                                                                                                                                                                                               

References

 

[1]    R. Egerton, Ultramicroscopy 2013, 127, 100.

[2]    P. Thaler, A. Volk, D. Knez et al., The Journal of chemical physics 2015, 143, 134201.

[3]    A. Santana, A. Zobelli, J. Kotakoski et al., Phys. Rev. B 2013, 87.

[4]    A. Surrey, D. Pohl, L. Schultz, B. Rellinghaus, Nano letters 2012, 12, 6071.

[5]    W. Xu, Y. Zhang, G. Cheng et al., Nature communications 2013, 4, 2288.

                                                                                                                                                                                                                                                                              

Acknowledgements

 

Our research is supported by the European Union within the 7th Framework Programme (FP7/2007-2013) under Grant Agreement no. 312483 (ESTEEM2) as well as by the Austrian Research Promotion Agency (FFG). 


Daniel KNEZ (Graz, Austria), Alexander VOLK, Philipp THALER, Wolfgang ERNST, Ferdinand HOFER
16:00 - 16:15 #6712 - IM02-OP073 Improved gas holder for in-situ TEM studies.
Improved gas holder for in-situ TEM studies.

In-situ TEM studies using an environmental cell (nanoreactor) play an important role in not just giving an understanding the corrosion mechanisms at a sub-micron scale, but also on the influence of heat-treatment on the microstructural change and corrosion behaviour of these alloys. One of the main requirements of for these in-situ TEM studies is the leak tightness of the nanoreactor. This is achieved by gluing the top and the bottom chips together with water glass or commercially available cyanoacrylate compounds. The drawback of this method is the chips are inseparable after the in-situ TEM study, making it impossible to carry out any further investigations on the same specimen. To overcome this drawback, we worked on upgrading the nanoreactor by redesigning the TEM holder to avoid gluing. This made it possible not only to assemble the nanoreactors in a more reliable way but also separate the two halves after the in-situ TEM study. This has opened up opportunities to carry out investigations like tomography, AFM measurements and other surface characterization studies on the same specimen, adding more to the mechanisms observed from the in-situ TEM studies.

 

Using this holder, we studied the corrosive attack of an Al alloy that has been heat-treated at 250 °C in an environment of oxygen bubbled through aqueous HCl of pH 3. After corrosion, STEM-tomography has been carried out to understand the propagation of the corrosive attack. Most of the Al alloys have the unique property of improving their strength by the mechanism known as precipitation hardening. This involves a special heat-treatment given to the alloys where alloying elements are added to aluminium, heated to an elevated temperature (usually above 500 °C) to form a single-phase solid solution, and then quenched rapidly to room temperature. On quenching, a super-saturated solid solution is obtained, from which a distribution of numerous fine nano-sized precipitates in the matrix can be obtained by heating at slightly elevated temperatures (typically ranging from 100 to 250 °C). Figure 1 shows the precipitation of numerous S-type nanoprecipitates in the matrix of a FIB specimen of AA2024, heat-treated at 250 °C for 3 minutes. While the formation of the S-type precipitates contributes to a significant increase in the strength of the alloy, the Mg-rich S-type precipitates and the formation of precipitate-free-zones next to the grain boundary have a severely detrimental effect on the corrosion behaviour of this alloy.

 

The corrosion behaviour of the heat-treated specimen can be investigated by assembling a nanoreactor. The heat-treated specimen was also exposed to a gas mixture of oxygen bubbled through aqueous HCl at room temperature, at a pressure of 1 bar.  The snapshots from a movie recorded during the in-situ corrosion experiment are shown in Figure 2.  In contrast to the specimen prior to heat-treatment, Figure 1, exposure to the reactive gas mixture of oxygen bubbled through aqueous HCl causes an immediate attack as shown in Figure 1(a). The bubble-like features observed all over the specimen indicate this, more prominently next to the grain boundary precipitates. As the exposure time increases, the corrosion attack progresses as observed by the growth of circular features all over the matrix after exposure of 15 min (Figure 2b) and approximately 30 min (Figure 2c). STEM-ADF tilt-series confirms that the circular feature observed all over the specimen are pits initiating from the surface of the sample. The high-density of the S-type precipitates, enriched in Mg and Cu act as numerous galvanic couples leading to such an attack.

 

Acknowledgement:

The authors gratefully acknowledge the ERC project 267922 for the financial support.


Sai Rama Krishna MALLADI (Delft, The Netherlands), Ahmet Koray ERDAMER, Tom DE KRUIJFF, Chunhui LIU, Frans TICHELAAR, Henny ZANDBERGEN
Salle Bellecour 1,2,3

"Tuesday 30 August"

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MS2-II
14:00 - 16:15

MS2: 1D and 2D materials
SLOT II

Chairpersons: Raul ARENAL (Chairperson, Zaragoza, Spain), Ursel BANGERT (Chairperson, Limerick, Ireland)
14:00 - 14:30 #8679 - MS02-S70 Properties of low-dimensional electron-beam-sensitive objects by spherical and chromatic aberration-corrected low-voltage high-resolution transmission electron microscopy and spectroscopy.
Properties of low-dimensional electron-beam-sensitive objects by spherical and chromatic aberration-corrected low-voltage high-resolution transmission electron microscopy and spectroscopy.

Spherical aberration correction has become inevitable in materials science for atomic-resolution imaging of conventional objects by transmission electron microscopy at medium accelerating voltages (80-300kV). However, low-Z and radiation-sensitive low-dimensional objects often require lower accelerating voltages because the threshold for knock-on damage is below 80kV for these materials. Unfortunately, the resolution of spherical aberration-corrected transmission electron microscopy at an accelerating voltage less than 80 kV with a standard Schottky type or field-emission electron source is strongly limited by the chromatic aberration of the objective lens. Here we report on our approach to achieve atomic resolution at voltages in the range between 20-80kV in transmission electron microscopy [1,2,3]. We apply the newly-developed aberration corrector that corrects for both, spherical and chromatic aberration of the objective lens.  First experimental results of low-dimensional objects will be presented.

            The performance of the SALVE (Sub-Angstrom Low-Voltage Electron microscopy) microscope enables atomic-resolution imaging and high-resolution energy-filtered (EF)-TEM with large energy windows even at 20kV accelerating voltage. Obviously, no damping of the contrast transfer function by chromatic aberration has to be considered in the image calculation routine, although image spread due to thermal magnetic field noise [4] needs to be taken into account as a new source of contrast transfer damping. The envelope now results from image-spread and residual defocus [5]. Image calculations are performed in dependence of the electron dose [6]. Figure 1 shows experimental HRTEM images of single-layer graphene at 30kV; as the usable aperture is about 65mrad, consequently an information limit of 107pm has been achieved. The comparison of the line profiles through the calculated and experimental images of a defect in graphene demonstrates that a good match has been obtained assuming Si substitutions. Moreover, on the example of TiO2 we demonstrate the new capabilities for EFTEM imaging. We now can use an energy window of about 20 eV where the defocus changes by only about 2 nm. This enables previously reported high-resolution EFTEM [7] imaging but at low accelerating voltages.

In addition, we discuss the importance of sophisticated sample preparation approaches [8,9] and show results in imaging and spectroscopy on low-dimensional objects [10-15].

 

References
[1] U. Kaiser, J. Biskupek, J.C. Meyer, J. Leschner, L. Lechner, H. Rose, M. Stöger-Pollach, A.N. Khlobystov, P. Hartel, H. Müller, M. Haider, S. Eyhusen and G. Benner Ultramicroscopy 111 (2011), p. 1239.
[2] www.salve-projcet.de
[3] M. Linck, P. Hartel, S. Uhlemann, F. Kahl, H. Müller, J. Zach, and M Haider, M. Niestadt and M. Bischoff, J. Biskupek, Z. Lee, T. Lehnert, F. Börrnert, H. Rose, and U. Kaiser (2016) submitted.
[4] S. Uhlemann Physical Review Letters 111(4) (2013), 046101.
[5] M. Haider, P. Hartel, H. Müller, Microsc. Microanal. 16(2010), 393.
[6] Z. Lee, H. Rose, O. Lehtinen, J. Biskupek, U. Kaiser, Ultramicroscopy 145 (2014), 3.
[7] K. W. Urban, J. Mayer, J. R. Jinschek, M. J. Neish, N. R. Lugg, and L. J. Allen, Phys. Rev. Lett. 110, (2013), 185507.
[8] G. Algara-Siller, O. Lehtinen, A, Turchanin, U. Kaiser, Appl. Phys. Lett. 104 (2014) 153115.
[9] G. Algara-Siller, S. Kurasch, M. Segeti, O. Lehtinen, U. Kaiser, Appl. Phys. Lett. 103 (2013) 20310.
[10] G. Algara-Siller, N. Severin, S. Chong, T. Björkman, R. Palgrave, A. Laybourn, M. Antonietti, Y.  Khimyak, A. Krasheninnikov, J. P. Rabe, U. Kaiser, A. Cooper, A. Thomas, M. Bojdys, Angewandte Chemie, 53 (2014) 7450.
[11] O. Lehtinen, L. Tsai, R. Jalil, R. R. Nair, J. Keinonen, U. Kaiser and I. V. Grigorieva, Nanoscale, 6 (2014) 6569.
[12] O. Lehtinen, N. Vats, G. Algara-Siller, P. Knyrim, U. Kaiser, Nano Lett. 15 (1) (2015) 235.
[13] T. Zoberbier, T. W. Chamberlain, J. Biskupek, M. Suyetin, A. G. Majouga, E. Besley, U. Kaiser, A. N. Khlobystov, Small (2016) accepted.
[14] A.  Markevich,  S. Kurasch, O. Lehtinen, O. Reimer, N. Hohlbein, X. Feng, K. Müllen, A. Turchanin,
A N. Khlobystov, U. Kaiser, and E. Besley, Nanoscale (2016) accepted.
[15] A. Botos, J. Biskupek, T. W. Chamberlain, G. A. Rance, C. Stoppiello, J. Sloan, Z. Liu, K. Suenaga, U. Kaiser, A. N. Khlobystov, JACS (2016) accepted.
[16] The authors greatly acknowledge funding from the German Research Foundation (DFG) and the Ministry of Science, Research and the Arts (MWK) of the federal state Baden-Württemberg, Germany in the frame of the SALVE project.


Ute KAISER (Ulm, Germany)
Invited
14:30 - 14:45 #5810 - MS02-OP219 Quantitative STEM analysis of multiscale CNT assemblies.
Quantitative STEM analysis of multiscale CNT assemblies.

Carbon nanotubes (CNTs) and their macroscopic assemblies have shown their potential as advanced conductors. The assembly of individual CNT’s into hierarchical structures is determined either by their interactions (bottom-up self-assembly) or during the fabrication process (top-down strategy). Hence, to tailor the macroscopic functional properties (e.g. electrical conductivity or porosity) of assemblies, a detailed understanding on how interactions create multiscale morphologies and finally function is required. STEM is widely employed for the nanoscale analysis of (in)organic materials. However, (S)TEM imaging of hierarchical CNT assemblies has several limitations. For instance, CNT/polymer composites are only composed of light elements which results in low contrast between the phases. Moreover, they are beam sensitive. We have optimized the contrast between the CNT’s and the polymer phase combining experiments and simulations at limited electron dose [1]. In addition, a hierarchical morphology extends across several length scales, hence, depending on the area of imaging, interpretations could vary, questioning the representativeness of the analysis. Our approach to imaging of representative volumes of hierarchical materials included the development of a toolbox to acquire large-areas at high-resolution, which in essence brings STEM closer to a bulk characterization technique [2].

With these technical developments and relevant image analysis tools, the processing-structure-property relationship of porous CNT assemblies and CNT/polymer composites (PNCs) have been studied on a scale that was previously impossible. We will illustrate the potential of the methodology on examples of: 1) CNT compacts where the final structure and electrical conductivity can be controlled by the polydispersity and aspect ratio of the CNT population (Figure 1) [3]; 2) CNT/polymer composites where residual CNT-CNT interactions during compounding lead to inhomogeneous but highly conducting CNT networks [4]; and 3) CNT alignment can be induced by spin-coating of polymer latex-CNT mixture which exhibit directionally varying electrical conductivity (Figure 2) [5]. In above investigations it has becomes clear that CNT-CNT contacts play a crucial role in the formation of least resistance pathway. At present we are investigation such contacts in details employing electron tomography combined with template matching to deduce the contact number and contact area per unit volume. In summary, we are developing (S)TEM towards bulk characterization tool for the analysis of beam sensitive hierarchical materials over multiple length scale which are materials of scientific and technological importance.

References

[1] K. Gnanasekaran, G. de With, H. Friedrich, Quantification and optimization of STEM image contrast for beam sensitive materials, (2016) submitted.

[2] K. Gnanasekaran, R. Snel, G. de With, H. Friedrich, Ultramicroscopy, 160 (2016) 130-139.

[3] K. Gnanasekaran, G. de With, H. Friedrich, J. Phys. Chem. C, 118 (2014) 29796-29803.

[4] K. Gnanasekaran, H. Friedrich, G. de With, Process dependent electrical percolation in mesoscale networks of multi-walled carbon nanotubes in polymer nanocomposites, (2016) submitted.

[5] M.A. Moradi, K.L. Angoitia, S. van Berkel, K. Gnanasekaran, H. Friedrich, J.P. Heuts, P. van der Schoot, A.M. van Herk, Langmuir, 31 (2015) 11982-11988.

Acknowledgements

The research leading to these results has received funding from the European Union Seventh Framework Programme (FP7-MC-ITN) under grant agreement No. 264710. The authors would like to thank the Directorate-General for Science, Research and Development of the European Commission for financial support of the research.


Karthikeyan GNANASEKARAN (Eindhoven, The Netherlands), Gijsbertus DE WITH, Heiner FRIEDRICH
14:45 - 15:00 #5935 - MS02-OP220 Investigating the loss spectrum of individual carbon nanotubes at high energy resolution in real and momentum space.
Investigating the loss spectrum of individual carbon nanotubes at high energy resolution in real and momentum space.

Over the last quarter of a century Electron Energy Loss Spectroscopy (EELS) has proved itself as an excellent tool for investigating the plasmonic [1-5] and electronic [1, 3, 4] response of carbon nanotubes: either by attaching a spectrometer to a Scanning Transmission Electron Microscope STEM [4, 5] or using a purpose built stand-alone spectrometer [1-3].  While STEM-EELS provides superior spatial resolution to that of a stand-alone spectrometer, it was not until recent improvements in electron source monochromation that the energy resolution of the two techniques became comparable. This was demonstrated by Sato and Terauchi [4] who used TEM –EELS to identify peaks in the loss spectrum of individual CNTs attributable to inter-band transitions between van Hove singularities (vHs) in the CNTs' electronic density of states.  

  

As an extension of the work of Sato and Terauchi [4], the present study is focused on the spatial and momentum dependence of the loss spectrum of individual CNTs. Fig. 1A shows loss spectra acquired from the single walled CNT in Fig. 1B using both a penetrating (1) and an aloof beam geometry (2), (3). The spectra in Fig. 1A are primarily characterised by peaks attributed to vHs (black arrows) [1, 3, 4], and, the π and π+σ plasmon resonances [1-5].  The apparent red-shift of the two plasmon peaks with increasing distance to the tube centre is consistent with literature [5]. Note the lack of a comparable red-shift for the “vHs peaks” as well as a significant change in fine structure of the high energy shoulder of the π plasmon peak.

 

Resolving the CNT loss spectrum in momentum space allows for access to information not readily available in real space. Specifically, the momentum resolved spectra in Fig. 1C reveal that the vHs peaks are non-dispersive (no peak shift with increasing momentum transfer), consistent with a reported measurement of a “bulk” sample of purified single wall CNTs [1]. Furthermore, it is shown that the “π peak” comprises two distinct plasmon modes: “π1“ and “π2”.  The π1 peak is non-dispersive, thus indicating confinement perpendicular to the CNT axis, while the π2 peak is dispersive, which in turn indicates significant plasmon propagation along the CNT axis [2, 3]. 

 

References:

[1] T Pichler et al., PRL 80 (1998) p. 4729.

[2] C Kramberger et al., PRL 100 (2008) 196803.

[3] C Kramberger et al., Nanotechnology 24 (2013) 405202.

[4] Y Sato and M Terauchi, Microsc. Microanal. 20 (2014) p. 807.

[5] M Kociak et al., PRB 61 (2000) 13936, BW Reed and M Sarikaya, PRB 64 (2001) 195404,

O Stéphan et al., PRB 66 (2002) 155422.

 

Acknowledgements:

SuperSTEM is the UK National Facility for aberration-corrected STEM and is funded by the UK Engineering and Physical Sciences Research Council (EPSRC). N Dellby and TC Lovejoy (Nion Company, WA, USA) are thanked for useful discussions and advice. U Bangert (University of Limerick, Ireland) is thanked for providing CNT samples. 


Fredrik S. HAGE (Daresbury, United Kingdom), Quentin M. RAMASSE
15:00 - 15:15 #5967 - MS02-OP221 Calcium Cobal Oxide: the first oxide-based misfit nanotube - from nanostructure to properties.
Calcium Cobal Oxide: the first oxide-based misfit nanotube - from nanostructure to properties.

        Though misfit layered compounds (MLC) have been known for some time,1 the interest in these materials has increased in recent years. Their unique structure allows them to behave like electron crystal, showing a phonon glass behavior and then, exhibiting superior thermoelectric properties.2 MLC can be considered as inter-grown materials with a general formula [(MX)1+x]m[TX2]n, where M is a rare earth (Pb, Sb, etc); T is Ti, V, Cr, Nb, etc. and X is S, Se.1 In 2011, nanotubes (NTs) based on MLC were synthetized for the first time in large amounts.3 Later, the syntheses were generalized to many other chalcogenide systems which were extensively studied at the local scale by TEM and associated techniques.4 However, until now, analogous synthesis of oxide-based MLC NTs has not been demonstrated yet.

        Here, we report a chemical strategy for the synthesis of calcium cobalt oxide-based misfit NTs. A combination of high-resolution STEM (HRSTEM)-HAADF imaging (including image simulations), spatially-resolved EELS (SR-EELS), electron diffraction, and density functional theory (DFT) calculations are used to discover the formation of new phase within these nanotubes. This new phase significantly differs from bulk starting material, inducing different electronic properties.

           

        The bulk starting material, Ca3Co4O9, has a misfit layered structure (Fig. 1), consisting of alternate stacking of CoO2 layers and Ca2CoO3 layers with a periodicity of 1.05 nm along the c axis. After the hydrothermal synthesis of Ca3Co4O9, several NTs (inset of Fig. 2a) are observed with typical lengths of several hundred nanometers. Sandwiched between bright layers (spaced by 0.86 nm), two other atomic layers, with weaker intensities, can be distinguished (purple arrows in Fig. 2a). These facts suggest that one layer from the initial bulk structure is now missing.

        To achieve further insight into the chemical nature of this missing layer, SR-EELS elemental quantification was performed by using the Ca-L2,3 and Co-L2,3 edges (Fig. 2b). The bright layers perfectly match the areas with the lowest Ca/Co ratio (red arrows in Fig. 2b) and correspond to one of the two cobalt sub-systems (CoO2 or CoO). Following the same reasoning, the two layers are related to the Ca sub-system (CaO) and the Co sub-system (CoO2 or CoO), respectively. Thus, it can be concluded that one CaO layer is missing in the NT.

        A novel structure CaCoO2-CoO2 was created by removing one CaO layer from the bulk structure which was then optimized by DFT structural relaxation. To confirm this new structure, we have performed a comparison between the experimental and simulated HRSTEM-HAADF images, using the DFT-relaxed structure as input for the simulation. As it can been seen from Fig. 3, there is an excellent agreement between the simulated and experimental micrographs. The excellent consistency between HRSTEM, SR-EELS, and DFT calculations support and confirm our proposed structure for the new calcium cobaltite phase.

 

        In light of this new structural and chemical information, a growth mechanism for these NTs is proposed. In addition, we will detail the electronic properties of the new MLC phase which we predict as semiconducting in nature in contrast with the bulk phase which is metallic.5,6

 

1. J. Rouxel, A. Meerschaut, and G. Wiegers, J. Alloys Compd. 229, 144 (1995)

2. Putri, Y. E.; Wan, C.; Wang, Y.; Norimatsu, W.; Kusunoki, M.; Koumoto, K. Scr. Mater. 66 (11), 895–898 (2012)

3. G. Radovsky, R. Popovitz-Biro, M. Staiger, K. Gartsman, C. Thomsen, T. Lorenz, G. Seifert, and R. Tenne, Angew. Chem. Int. Ed. 50, 12316 (2011).

4. L.S. Panchakarla, L. Lajaunie, R. Tenne, R. Arenal. J. Phys. Chem. C  (2015), In Press.

5. L.S. Panchakarla, L. Lajaunie, A. Ramasubramaniam, R. Tenne, R. Arenal, Submitted

6. This research has received funding from the EU under Grant Agreement 312483-ESTEEM2, Grant Agreement 604391 Graphene Flagship and the Spanish Ministerio de Economia y Competitividad (FIS2013-46159-C3-3-P).


Luc LAJAUNIE (Zaragoza, Spain), Leela S PANCHAKARLA, Ashwin RAMASUBRAMANIAM, Reshef TENNE, Raul ARENAL
15:15 - 15:30 #6418 - MS02-OP225 Exciton and Plasmon Mapping at the Nanoscale.
Exciton and Plasmon Mapping at the Nanoscale.

Excitons and plasmonic interactions, which are effectively responsible for the transfer of energy within devices such as solar cells, LEDs and semiconductor circuits, have been understood in theory for decades. However, the photophysical behaviour within materials has always been rather difficult to understand and be directly observed.  

Surface structure, localised thickness variations and presence of edges are bound to influence the macroscopic properties of the materials. Understanding the local surface structure and chemistry of these materials at the nanoscale is crucial in order to reach the full potential of the materials for real-life applications. Hence, there is a need to fully characterise the physical and chemical properties from the bottom up i.e. at the level of individual atoms and to map the optoelectronic properties where they happen.

 

Due to recent technical improvements we can now access parts of the low loss electron energy-loss (LL EEL) spectra which had previously been inaccessible. This opens up new possibilities to study nanomaterials not only at unprecedented energy but also – contrary to bulk optical techniques – with a spatial resolution at the nanoscale, as described by Zhou, Dellby [1]. Although some significant progress has been made recently in unravelling the physical origins of the LL EEL features as shown by Tizei, Lin [2], significant gaps in our understanding of the signals and their origins remain. In the study presented here, we used for the first time a combination of experimental monochromated LL STEM EEL spectroscopy and theoretical calculations using time-dependent density functional theory (TDDFT) as well as the Bethe-Salpeter equation (BSE) to study the optical properties of MoS2 at the nanoscale with the aim to understand the origins of the peaks and regional variations of the complete LL EEL spectrum. We report that we identified and resolved as well as mapped mid-bandgap excitonic signals at ~1.88eV and at ~2.08eV on MoS2 flakes using monochromated LL EELS (figure 1) and confirmed their origin by BSE calculations; we also identified and mapped several plasmonic peaks (figure 1) using LL EELS combined with TD DFT. Furthermore, we observed great spatial variations in the LL EELS signal when comparing the edge to inner regions of a flake, i.e. with increasing number of layers, and we show how these can be largely attributed to beam geometry effects. The effects of the experimental set-up on the low loss EELS signal will be discussed.

 

1.         Zhou, W., et al., Monochromatic STEM-EELS for Correlating the Atomic Structure and Optical Properties of Two-Dimensional Materials. Microscopy and Microanalysis, 2014. 20(S3): p. 96-97.

2.         Tizei, L.H.G., et al., Exciton Mapping at Subwavelength Scales in Two-Dimensional Materials. Physical Review Letters, 2015. 114(10).


Hannah NERL (Dublin, Ireland), Kirsten WINTHER, Fredrik HAGE, Kristian THYGESEN, Lothar HOUBEN, Quentin RAMASSE, Valeria NICOLOSI
15:30 - 15:45 #6375 - MS02-OP224 High resolution EELS on individual carbon nanotubes by monochromated TEM.
High resolution EELS on individual carbon nanotubes by monochromated TEM.

            Single-walled carbon nanotube (SWNT) has been known to exhibit a wide range of electronic properties upon its atomic arrangement [1,2]. However it is still difficult to directly correlate the distinct electronic properties with its atomic structure from an individual carbon nanotube. Here, we successfully demonstrate highly localized electronic properties of individual carbon nanotubes with precise atomic structures by means of transmission electron microscopy (TEM) consisting of a monochromator.

            We have used a JEOL TEM (TripleC#2) equipped with a Schottky field emission gun, a double Wien filter monochromator and delta correctors. The energy resolution is adjustable from 30 to 200 meV by choosing the energy selecting slits in the dispersion plane of the monochromator. We have performed the electron energy loss spectroscopy (EELS) on individual freestanding SWNTs with the scanning TEM (STEM) mode at 60 kV. The target SWNTs are also imaged by both STEM/TEM modes to fully assign their atomic structures.

           Figure 1(a) presents a TEM image of two closely aligned SWNTs (inset) and their C K-edge (C1s) spectra. The chirality of thicker SWNT (top) and thinner one (bottom) are assigned as (9, 7) and (6, 5), respectively. Each spectrum has several sub-peaks on the π* response and exhibits completely different features. The line shape analysis [3] suggests that the π* response of (6, 5) tube consists of four sub-peaks related to the van Hove singularity (vHs) (1s →E1*, E2*, E3* and  E4*) and a broad π* resonance (Fig. 1(b)). The position of the sub-peaks fairly consists with the vHs in the shifted ab-initio DOS [3] (inset in Fig. 1(b)). The relative intensities are possibly influenced by core-hole effects. The valence-loss spectra taken from the same SWNTs also exhibit the peaks related to the vHs (Ei → Ei* (i=1,2,…)). However it is difficult to distinguish the two closely aligned SWNTs from the valence-loss spectra because the large delocalization mixes the peaks for both SWNTs. This means that the core-loss spectra has a much higher special resolution and reflects more localized electronic structures.

            Then, we have experimentally investigated how the core-loss spectra changes corresponding to nonperiodic structures. Figure 2 shows STEM images of a typical hybrid SWNT and its C K-edge (C1s) spectra. We have confirmed from TEM image (not shown here) that the hybrid SWNT involves a serial junction between the thinner (11, 1) semiconducting part and the thicker (10, 10) metallic part. The C K-edges (i to x) presented in Figs. 2(b) and 2(c) are obtained when the electron probe is scanned across the broken lines (i to x) in Fig. 2(a). The π* peaks in the junction part (iv to vii) are different form the spectra for either (10, 10) and (11, 1) and show new peaks (black arrows in Fig. 2(c)) reflecting the distinct electronic structures. Such a highly localized measurement of electronic properties for individual carbon nanotubes has never been realized by any other methods.

 

References:

[1] N. Hamada, S. Sawada, and A. Oshiyama, Phys. Rev. Lett. 68 (1992), p.1579.

[2] R. Saito, M. Fujita, G. Dresselhaus, and M. S. Dresselhaus, Phys. Rev. B 46 (1992), p.1804.

[3] K. De Blauwe et al., D. J. Mowbray, Y. Miyata, P. Ayala, H. Shiozawa,  A. Rubio, P. Hoffmann, H. Kataura, and T. Pichler, Phys. Rev. B 82 (2010), p.125444.


Ryosuke SENGA (Tsukuba, Japan), Thomas PICHLER, Kazu SUENAGA
15:45 - 16:00 #6886 - MS02-OP233 Layer specific optical band gap measurement at nanoscale in MoS2 and ReS2 van der Waals compounds by high resolution electron energy loss spectroscopy.
Layer specific optical band gap measurement at nanoscale in MoS2 and ReS2 van der Waals compounds by high resolution electron energy loss spectroscopy.

Atomically thin monolayer transition metal dichalcogenides (TMDs) are a new class of two dimensional nano-material with promising optoelectronic, energy and novel device applications. One of the important features of many TMDs is that they undergo a crossover from indirect band gap in the bulk to direct band gap in the monolayer form [1]. While the monolayer properties of TMDs are unique (e. g. direct band gap), it may be illusive while fabricating practical devices because the cross over to indirect band gap occurs due to unavoidable electronic packaging and the property could change in close proximity of foreign substance. Therefore, there is an urge to stabilize such novel properties arising from the monolayer in the interface or in the bulk form. With this goal there is a candidate material already reported in the family, i.e. crystalline 1T-ReS2 [2]. In this work we have exploited high resolution electron energy loss spectroscopy (HREELS) to perform layer specific direct measurement of optical band gaps of two important van der Waals compounds, MoS2 and ReS2 at nanoscale. Areas with mono, bi, tri and multilayers of MoS2 and ReS2 have been identified using a electron microscope. The atomic resolution image of mono and multilayer MoS2 and ReS2 have been given in figure 2. For monolayer MoS2, the twin excitons (1.8 and 1.95 eV) originating at the K point of the Brillouin zone are observed. The band gap values have been deduced after plotting Tauc-like plots for both direct and indirect band gaps from the EELS absorption spectra. An indirect band gap of 1.27 eV is obtained from the multilayers regions (see figure 1). Indirect to direct band gap crossover is observed which is consistent with the previously reported strong photoluminescence from the monolayer MoS2. For ReS2 the band gap is direct and a value of 1.52 and 1.42 eV are obtained for the monolayer and multilayers, respectively (see figure 1). A direct to indirect band gap transition has been observed in MoS2 going from monolayer to bilyer but no such transition is observen in ReS2 The results demonstrate the power of HREELS technique as a nanoscale optical absorption spectroscopy tool.
[1] K. Mak, C. Lee, J. Hone, J. Shan, and T. F. Heinz, Phys. Rev. Lett. 105, 136805 (2010).
[2]S. Tongay, H. Sahin, C. Ko, A. Luce, W. Fan, K. Liu, J. Zhou, Y-S Huang, H. Ching-Hwa , J. Yan, D. F. Ogletree, S. Aloni, J. Ji, S. Li, J. Li, F.M. Peeters, and J. Wu, Nat. Comm. 5, 3252 (2014).

[3] K. Dileep, R. Sahu, Sumanta Sarkar, Sebastian C. Peter, and R. Datta, J. Appl. Phys. 119, 114309 (2016).


Dileep KRISHNAN (Dublin, Ireland), Rajib SAHU, Sebastian PETER, Ranjan DATTA
16:00 - 16:15 #6863 - MS02-OP232 STEM and EELS investigation of graphene nanoribbons epitaxially grown over SiC.
STEM and EELS investigation of graphene nanoribbons epitaxially grown over SiC.

Graphene nanoribbons grown on the (1-10n) and (-110n) facets of SiC have demonstrated exceptional electronic properties as ballistic transport along their long direction and a band gap in the small direction [1]. In order to understand these electronic properties, we have performed (S)TEM (HAADF, LAADF, ABF, EELS) investigation in combination with STM and ARPES measurements. The (S)TEM have been performed on X-section sample as it can be schematically seen in the figure 1. Using Cs corrected STEM at 60 keV voltage, the structural aspect of the graphene can be maintained for high resolution investigation and EELS spectromicroscopy. In particular we will describe the origin of the metal-semiconductor junction as observed in these graphene [2] and this will be discussed in term of curvature effect, quantum confinement on a complex reconstructed step as presented in figure 2 [3].

 

[1] Exceptional ballistic transport in epitaxial graphene nanoribbons, J. Baringhaus, M. Ruan, F. Edler, A. Tejeda, M. Sicot, A. Taleb-Ibrahimi, A.-P. Li, Z. Jiang, E.H. Conrad, C. Berger, C. Tegenkamp, and W.A. de Heer, Nature 506, 349 (2014).

[2] A wide band gap metal-semiconductor-metal nanostructure made entirely from graphene, J. Hicks, A. Tejeda, A. A. Taleb-Ibrahimi, M.S. M.S. Nevius, F. F. Wang, K. K. Shepperd, J. J. Palmer, F. Bertran, P. Le Fèvre, J. Kunc, W.A. de Heer, C. Berger, E.H. Conrad, Nature Physics 9, 49 (2013).

[3] Atomic structure of epitaxial graphene sidewall nanoribbons:  flat graphene, miniribbons and confinement gap, Irene Palacio, Arlensiú Celis, Maya N. Nair, Alexandre Gloter, Alberto Zobelli, Muriel Sicot, Daniel Malterre, Meredith S.  Nevius, Walt A. de Heer, Claire Berger, Edward H. Conrad, Amina Taleb-Ibrahimi and Antonio Tejeda, Nano letters 15, 182-189 (2015).

 


Alexandre GLOTER (LPS), Irene PALACIO, Arlensiu CELIS, Maya NARAYANAN NAIR, Alberto ZOBELLI, Muriel SICOT, Daniel MALTERRE, Claire BERGER, Walt DE HEER, Ed CONRAD, Amina TALEB, Antonio TEJEDA
Salle Prestige Gratte Ciel

"Tuesday 30 August"

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MS3-II
14:00 - 16:15

MS3: Semiconductors and devices
SLOT II

Chairpersons: Catherine BOUGEROL (Chairperson, Grenoble, France), Vincenzo GRILLO (Chairperson, Modena, Italy)
14:00 - 14:30 #8350 - MS03-S73 Atomic-Scale Compositional Fluctuations in Ternary III-Nitride Nanowires.
Atomic-Scale Compositional Fluctuations in Ternary III-Nitride Nanowires.

Ternary InGaN and AlGaN alloys have been sought after for the application of various optoelectronic devices spanning a large spectral range between the deep ultraviolet (DUV) and infrared (IR), including light-emitting diodes, and laser diodes. Conventional planar devices suffer from a high density of dislocations due to the large lattice mismatch, which together with the non-ideal alloy mixing, are established as the cause for various phase separation, surface segregation, and chemical ordering processes commonly observed in nitride alloys. Growth in a nanowire (NW) geometry can overcome these processes by providing enhanced strain relaxation at the free surfaces. In both InGaN and AlGaN, their superior operational characteristics can be attributed to enhanced charge carrier localization at alloy inhomogeneities down to the atomic-scale. Atomic-level chemical ordering in wurtzite InGaN and AlGaN epilayers, describing preferential site occupancy of the cation sublattice by the group III atoms, has been reported mostly with a 1:1 periodicity along the [0001] growth direction [1]. Reports of atomic ordering in cubic ternary III-V alloys (including III-As and III-P) have remained limited to planar thin films; its prevalence within NWs had not been explored.

 

InGaN/GaN dot-in-a-wire nanostructures grown on Si(111) by molecular beam epitaxy (MBE) were recently developed to achieve more controlled light emission across the entire visible spectrum [2], and characterized using aberration-corrected scanning transmission electron microscopy (STEM) [3]. High-angle annular dark-field (HAADF) Z-contrast imaging shows the InGaN quantum dots (QDs) with atypical oscillating HAADF image intensity at the atomic-level along the c-axis growth direction, exhibiting alternating bright/dark atomic-planes within the QDs [3]. Electron diffraction patterns obtained from the QDs show the presence of otherwise forbidden superlattice reflections, unambiguously confirming the presence of 1:1 bilayer atomic ordering [1]. In addition, atomic-resolution elemental mapping using electron energy-loss spectroscopy (EELS) shows significant In-enrichment in alternating c-planes matching the maxima in the ADF signal collected concurrently, with a deviation from the local mean composition by >25%. Corresponding annular bright field imaging (ABF) enables the visualization of light elements like N, and was used to directly deduce the NWs as N-face polarity. It also indicates that the In-atoms have a preferential occupation at the lower-coordination site along a pyramidal surface facet, which is the first experimental evidence [3] validating the existing theoretical structure model for ordered InGaN layers [4].

 

Compositional inhomogeneities were also investigated in MBE-grown self-catalyzed AlGaN NWs, which exhibit high luminescence efficiency in the DUV range [5]. With increasing Al concentration, atomic-scale compositional modulations can be induced due to differences in Ga- and Al-adatom migration and incorporation at the growth front. The modulating HAADF intensities were confirmed as Ga-rich/Al-rich regions using EELS elemental mapping at atomic-resolution. Furthermore, their QD/quantum dash-like nature was determined based on multi-orientation views of the same atomic-scale Ga-rich regions. Such atomic-scale compositional modulations in AlGaN can provide energy band fluctuations leading to strong three-dimensional confinement of charge carriers [6].

 

[1] P. Ruterana, G. Nouet, W. Van der Stricht et al., Appl. Phys. Lett., 72, 1742-1744 (1998)

[2] H.P.T. Nguyen, K. Cui, S. Zhang et al., Nano Lett., 12, 1317-1323 (2012)

[3] S.Y. Woo, M. Bugnet, H.P.T. Nguyen et al., Nano Lett., 15(10), 6413–6418 (2015)

[4] J.E. Northrup, L. Romano and J. Neugebauer, Appl. Phys. Lett., 74, 2319–2321 (1999)

[5] S. Zhao, S.Y. Woo, M. Bugnet et al., Nano Lett., 15(12), 7801–7807 (2015)

[6] The authors are grateful to NSERC for supporting this research. The microscopy was carried out at the Canadian Centre for Electron Microscopy, a National facility supported by NSERC, CFI and McMaster University.


Steffi Y WOO, Matthieu BUGNET (Ontario, Canada), Hieu P T NGUYEN, Songrui ZHAO, Zetian MI, Gianluigi A BOTTON
Invited
14:30 - 14:45 #5193 - MS03-OP238 Insight on the fine structure of semiconductor nanowires down to single atom detection: correlation to their physical properties.
Insight on the fine structure of semiconductor nanowires down to single atom detection: correlation to their physical properties.

Nanotechnology allows modifying the structure of nanoobjects down to the atomic scale. Low dimensional quantum structures can be embedded in a nanowire system in order to modify its properties at will. Electronic and optoelectronic devices benefit from the new advances in growth methodologies, with a fine control of the elemental species locally deposited.

In the present work, we will present how an accurate knowledge on the atomic positions, down to single atom detection, may help to deeply understand the improved properties of our complex nanowire heterostructures. We will show how from scanning transmission electron microscopy (STEM), it is possible to obtain precise 3D atomic models that can be used as input for the simulation of its physical properties. Finally, these theoretical properties will be cross-correlated to the experimental measurements obtained locally on our nanowire systems.

Some of the presented works will include: the effect of the isotope distribution on the phononic behavior of nanowires, the measurement of the internal electric fields in quantum structures and the influence of doping on the compensation of the polarization field, or the influence of polarity and the atomic arrangement on the photonic and electronic properties of single heterostructured nanowires.

1.    J. Arbiol et al., Nanoscale 4, 7517 (2012).

2.    M. Heiss, J. Arbiol et al., Nature Materials 12, 439 (2013).

3.    J. Arbiol, et al., Materials Today 16, 213 (2013).

4.    M. de la Mata, J. Arbiol, et al., Journal of Materials Chemistry C 1, 4300 (2013).

5.    J. Müßener, J. Arbiol, et al., Nano Letters, 14, 5118 (2014).

6.    F. Schuster, J. Arbiol, et al., ACS Nano, 8, 4376 (2014)

7.    Gozde Tutuncuoglu, Jordi Arbiol, et al., Nanoscale, 7, 19453 (2015)

8.    M. de la Mata, J. Arbiol, et al., Nano Letters, 16, 825 (2016)


Jordi ARBIOL (Bellaterra, Spain), Aziz GENÇ, Reza R. ZAMANI, María DE LA MATA
14:45 - 15:00 #6604 - MS03-OP247 Quantification of the HAADF contrast from the nanometer scale down to the single atomic column: application to quantum cascade lasers.
Quantification of the HAADF contrast from the nanometer scale down to the single atomic column: application to quantum cascade lasers.

The emission wavelength of quantum cascade lasers can potentially be continuously tuned from the short (2µm) to the long (15µm) infrared, making them an ideal candidate for infrared emitters in a region where materials with the appropriate gap are scarce. The challenge with QCLs lies in the complexity of the epitaxial structure. Indeed, in a typical InGaAs/InAlAs/InP structure the active region is often comprised of thirty stages, each stage containing an alternation of twenty or more InGaAs wells and InAlAs barriers, the thicknesses of which range between 7 and 40 Angstrom. Properly optimizing the epitaxial process therefore requires feedback on the thickness and, most importantly, the composition of each individual well and barrier in the layer, as even small deviations can make or break the end device. Currently, even in the most advanced transmission electron microscopes, equipped with state of the art EDX systems it is not possible to obtain quantitative information on the composition of layers that are thinner than 15 Angstrom. Quantifying the chemical information in the Z-Contrast of HAADF images [1] therefore provides the only solution to obtain the kind of quantitative feedback required for QCLs. The present paper discusses how to obtain such chemical mappings in InGaAs/InAlAs QCLs by combining HAADF-STEM, EDX and also X-ray Diffraction and how the information collected from these mappings is used to optimize the QCL structure [2]. The paper also discusses how this information is fed to numerical models to model the performance of the end device and optimize the QCL design. Finally, the paper forays into the quantification of the contrast of single atomic columns, ultimate step in the analysis.

 

[1] K. Pantzas, G. Patriarche, D. Troadec, S. Gautier, T. Moudakir, S. Suresh, L. Largeau, O. Mauguin, P. L. Voss, and A. Ougazzaden, Nanotechnology, 23, 455707 (2012)

[2] K. Pantzas, G. Beaudoin, G. Patriarche, L. Largeau, O. Mauguin, G. Pegolotti, A. Vasanelli, A. Calvar, M. Amanti, C. Sirtori, and I. Sagnes, Semiconductor Science and Technology, accepted for publication (2016)


Konstantinos PANTZAS (Marcoussis), Gilles PATRIARCHE, Ludovic LARGEAU, Maria AMANTI, Angela VASANELLI, Carlo SIRTORI, Grégoire BEAUDOIN, Isabelle SAGNES
15:00 - 15:15 #6317 - MS03-OP244 The influence of atomic size effect on the quantitative compositional analyses by means of local lattice parameter measurements.
The influence of atomic size effect on the quantitative compositional analyses by means of local lattice parameter measurements.

A quantitative analysis of the chemical alloy composition down to the near atomic scale is a key issue for understanding  physical properties of semiconductor nanostructures. One method that is commonly applied to this problem is ‘strain mapping’ in a high-resolution transmission electron microscopy (HRTEM) image. The idea is to measure the out-of-plane lattice parameter locally in the HRTEM image and to calculate a local chemical composition within a specific probe volume using elastic continuum theory (see e.g. Refs. [i,ii]. Prerequisites for this approach are that (i) the HRTEM image contrast yields local information about the mean atomic position along the projection direction and (ii) the probe volume possesses a tetragonal distortion, i.e. the local in-plane lattice parameter is fixed to that of the substrate. We show that the latter assumption only holds for comparatively large probe volumes, while it is a poor approximation as the probe volume approaches the near atomic scale. Such small probe volumes, however, are mandatory for studying small composition variations to distinguish e.g. statistical alloy fluctuations from clustering effects. For demonstration, we have performed HRTEM multislice image simulations using relaxed supercells that correspond to realistic sample thicknesses of around 10 nm. The supercells were relaxed using an interatomic potential that has been fitted to DFT calculations[iii]. The supercells contain typical (In,Ga)N quantum structures, such as wells or dots, coherent to GaN. Fig. 1 shows a random Indium distribution within a quantum well, as determined by counting the ratio of Ga and In atoms within a probe volume of (0.519 x 0.317 x 10) nm³ (corresponding to the GaN unit cell times the sample thickness). Fig. 2 displays the c-lattice parameter map, measured in the corresponding HRTEM image simulation. As can be seen by naked eye, the out-of-plane lattice parameter map does only poorly reflect the true In distribution within the supercell. Even a non-existing ordering phenomena might be mistakenly interpreted from the c-lattice parameter map. As we will show, this effect stems from local strain fields caused by In fluctuations in the alloy, which do not only extent in out-of-plane but also in in-plane directions, making the Indium quantification error prone. We have developed a novel approach, which measures next to the out-of-plane, also the local in-plane lattice parameter to extract the local chemical composition. This method allows a much more reliable calculation of the chemical composition from these complex strain fields. Fig. 3 shows the resulting ‘strain revised’ c*-lattice parameter of the (In,Ga)N quantum well, which reveals a much better agreement with the actual In distribution. In addition to the theoretical works, we will also demonstrate first experimental images, where the feasibility of our approach is demonstrated. We propose that our method is versatile, working also for other compounds and is not limited to 2D objects but also applies for quantum wires or dots.


[i] A. Rosenauer, 1, D. Gerthsen and V. Potin, Phys. Stat. Sol. (a) 203, 176 (2006)

[ii] T.P. Bartel and C. Kisielowski, Ultramicroscopy 108, 1420 (2008)

[iii] E. C. Do, Y.-H. Shin and B.-J. Lee J. Phys.: Condens. Matter, 21, 325801 (2009)


Tobias SCHULZ (Berlin, Germany), Toni MARKURT, Thilo REMMELE, Maxim KORYTOV, Martin ALBRECHT
15:15 - 15:45 #8302 - MS03-S73B Quantitative STEM - From composition to atomic electric fields.
Quantitative STEM - From composition to atomic electric fields.

The image intensity in high-angle annular dark field STEM images shows a strong chemical sensitivity. As it is also influenced by specimen thickness, crystal orientation as well as characteristics of illumination and detector, a standard-free quantification of composition requires a comparison with accurate image simulation, for which we use the frozen lattice approach of the STEMsim program taking the non-uniform detector sensitivity into account. The experimental STEM intensity is normalized with respect to the incident electron beam. For the quantification of a STEM image it is subdivided into Voronoi cells in which the intensity is averaged. Analysis of the composition in a ternary semiconductor layer such as InxGa1-xN requires measuring the specimen thickness in regions with known composition by comparison with the simulated STEM intensity. Interpolation of the obtained thickness into the layer with unknown composition yields a map of the specimen thickness. Finally, specimen thickness and STEM intensity are compared with simulations computed as a function of composition resulting in a map of the In-concentration x. In alloys containing atoms with different covalent radii (e.g. In and Ga in InxGa1-xN) static atomic displacements occur, which are computed with empirical potentials and included in the simulation. As an application example Fig. 1a shows an array of core-shell nanowires. One single nanowire is depicted in Fig. 1b. The core-shell area marked by a yellow frame is shown in Fig. 1c. Figs. 1d and 1f show high-resolution STEM images of the core-shell regions corresponding to the top and the bottom of a nanowire, respectively. The maps of the measured In-concentration given in Figs. 1e and 1g reveal an increasing thickness of the layer along the growth direction. In the upper part, the layer shows variations of the In-concentration clearly beyond the random-array fluctuations as was shown by a comparison with image simulation.

In the second part of the talk we present results on measurements of atomic electric fields. Differential phase contrast STEM detects the field-induced angular deflection of the electron beam with a segmented ring detector (J. Chapman et al., Ultramicroscopy 3 (1978), 203) assuming that the Ronchigram is homogeneously filled and shifted as a whole in the presence of electromagnetic fields (N. Shibata et al., Nat. Phys. 8 (2012), 611). These assumptions were tested by simulation for 1.3 nm thick GaN. Fig. 2b shows Ronchigrams simulated for 6x6 scan positions within the region marked in Fig. 2a. The dominant effect of the atomic electric field is a complex redistribution of intensity within a Ronchigram. By fundamental quantum mechanical arguments, we take the complex intensity distribution in the Ronchigram into account (K. Müller et al., Nat. Commun. 5 (2014), 5653). The intensity in a certain pixel of the recorded Ronchigram is proportional to the probability that the corresponding momentum is observed. Thus, a center-of-gravity type summation yields the expectation value for the momentum. To relate the electric field in the specimen to the observed momentum transfer, Ehrenfest’s theorem is applied. For thin specimens, the expectation value of the momentum is found to be proportional to the projection of the electric field along the optical axis, convolved with the intensity distribution of the incident STEM probe. We demonstrate the potential of this approach in both simulation and experiment. For the GaN simulation in Fig. 2c we find the electric field depicted in Fig. 2d. Atomic sites appear as sources of the field which has a magnitude of up to 1.5 V/pm. As only the convolution of the true field with the probe intensity can be measured, the field strength decreases in the direct vicinity of atomic sites. In a first experiment, 20x20 Ronchigrams of SrTiO3 with a thickness of 2.5 nm have been recorded on a conventional charge-coupled device (CCD), yielding the electric field in Fig. 2e. We also report on pilot experiments with the ultrafast pnCCD camera (K. Müller et al., Appl. Phys. Lett. 101 (2012), 212110) which was operated at read-out rates of up to 4 kHz. For example, Fig. 2f shows the momentum transfers recorded at a MoS2 mono/bilayer interface, demonstrating that fast detectors are the key for atomic-scale materials analyses at a reasonable field of view.


Andreas ROSENAUER (bremen, Germany), Knut MÜLLER-CASPARY, Marco SCHOWALTER, Tim GRIEB, Florian F. KRAUSE, Thorsten MEHRTENS, Armand BÉCHÉ, Johan VERBEECK, Josef ZWECK, Stefan LÖFFLER, Peter SCHATTSCHNEIDER, Marcus MÜLLER, Peter VEIT, Sebastian METZNER, Frank BERTRAM, Jürgen CHRISTEN, Tillmann SCHIMPKE, Martin STRASSBURG, Rafal E. DUNIN-BORKOWSKI, Florian WINKLER, Martial DUCHAMP
Invited
15:45 - 16:00 #5755 - MS03-OP239 Analysis of strain and composition in GeSi/Si heterostructures by electron microscopy.
Analysis of strain and composition in GeSi/Si heterostructures by electron microscopy.

Electronic properties of GeSi/Si-based metal oxide semiconductor field effect transistors (MOSFETs) are strongly influenced by the geometry, composition and strain state of the Ge containing source/drain stressor regions and the Gate channel in between. In the first part of our contribution, we hence present quantitative STEM Z-contrast evaluations of the Ge composition in MOSFETs with different stressor geometries and verify the results with energy-dispersive analyses of X-rays (EDX) using the chemiSTEM system mounted on an FEI Titan facility. To evaluate the strain distribution within the gate channel and the stressors, we used nano-beam electron diffraction employing a delay-line detector (DLD, [1]) which enhances the acquisition speed for the 4-dimensional data set (diffraction patterns as a function of the STEM raster position) to 10ms/image.

As illustrated in Fig.1 the top of the DLD consists of a microchannel plate (MCP) stack that causes a cascade of secondary electrons for each 300keV electron impinging on the detector. The heart of the DLD are 2 meandering wires shown in blue and red in which each cascade causes electrical pulses travelling towards the ends of the wires. Depending on the incident position of the electron a characteristic time delay between the arrivals of the 2 conjunct pulses at the ends of a wire is measured with high accuracy, giving the coordinate of incidence perpendicular to the meander. By crossing two such delay-lines the point (x,y) and time τ of incidence can be detected. Thus the DLD allows for both the recording of a continuous stream of single electron events processed by a time-to-digital converter (TDC) with a time precision in the picosecond range and the in-situ integration of the signal over a certain frame time to obtain conventional images. Note that no pixel raster is involved here. The two modes of operation are illustrated in the right part of Fig. 1.

An example for a MOSFET exhibiting 2 Ge regimes of 22% and 37% within the stressors is shown in Fig. 2 for the strain measurement along the [001] direction and in Fig. 3 for a measurement along the [110] direction. Here a STEM raster of 100x100 pixels was used with a dwell time of 40ms. Figure 2 was obtained by evaluating the position of the 004 CBED disc using the radial gradient maximisation method [2] whereas the 220 reflection was measured to obtain Fig.3. Two strain regimes are observed inside the GeSi stressors due to the different regimes of Ge contents. The gate channel exhibits compressive strain of up to 3% laterally and an expansion below 1% along [001]. Concerning the influence of the acquisition speed on strain precision, recording 10,000 diffraction patterns took 6.5min here, yielding a strain precision of 0.12% in terms of the standard deviation determined in unstrained Si regions. The same experiment at twice the scan speed (dwell time of 20ms) yields the same average strain distributions, however, at the precision of 0.18%.

In the second part, we report a systematic study on the epitaxy of GeSi on Si (111) as a function of growth temperature. In particular, temperatures of 400, 450 and 550°C have been used and the strains along [111] and [1-11] have been measured. Using elasticity theory, composition maps were derived from the strain results, yielding the three Ge profiles in Fig.4. Obviously growth at 400 and 450°C leads to islands of pure Ge whereas the Ge content drops to 60% if the temperature is raised to 550°C. We finally discuss our results with respect to Si/Ge interdiffusion which causes a gradual change of composition at the interface.

[1] K. Müller-Caspary, A. Oelsner, P. Potapov, Applied Physics Letters 107 (2015), 072110.

[2] K. Müller and A. Rosenauer et al., Microscopy and Microanalysis 18 (2012), 995.

[3] Funding: Deutsche Forschungsgemeinschaft (DFG) under contract MU3660/1-1.


Knut MÜLLER-CASPARY (Bremen, Germany), Andreas OELSNER, Pavel POTAPOV, Thomas SCHMIDT
16:00 - 16:15 #6572 - MS03-OP246 Analysis of the Sb and N distribution in GaAsSb/GaAsN superlattices for solar cell applications.
Analysis of the Sb and N distribution in GaAsSb/GaAsN superlattices for solar cell applications.

Dilute nitride III–V alloys have attracted a lot of attention in the last decade due to its wide tunability of both band gap and lattice constant that makes them a potential candidate in multi-junction solar cell technology. For certain, these alloys can be used to improve the conventional lattice matched three-junction solar cell by the replacement of Ge bottom cell and/or also by adding a fourth junction with a bandgap of 1 eV, which is predicted to provide efficiencies beyond 50%.1 In this sense, the GaAs1-x-ySbxNy quaternary alloys have a surplus due to the Sb-surfactant effect and the possibility of an independent tuning of the electron and hole confinements.2 However, the composition control in GaAsSbN materials present important challenges, and undesired phenomena such as segregation, clustering or phase separation are typically observed. A possible route to overcome these handicaps is the use of superlattices, based on the fine stacking of ternary and/or binary thin layers, which could, in addition, offer extra advantages (such as a greater collection efficiency). In any case, it is expected that the spatial separation of Sb and N atoms would improve the composition control and therefore facilitate a smaller lattice mismatch deviation with respect to the substrate. The present work analyses the Sb and N distribution in different GaAsSb/GaAsN superlattice structures grown lattice matched to GaAs substrates by molecular beam epitaxy. The nominal contents of Sb and N are 6.12% and 2.7%, respectively, and the periodicity is varied from a few MLs to ~20 nm. The samples were then characterised by different transmission electron microscopy techniques (TEM) and the results supported by X-ray diffraction (XRD) and cross-sectional scanning tunneling microscopy (X-STM) data.

Firstly, compositionally sensitive 002 dark field (DF) imaging was carried out in order to estimate the compositional distribution and periodicity, where the Sb and N rich areas depict a brighter or darker intensity than the GaAs ones, respectively (Figure 1a). Although the periodicity is close to planned, the intensity analysis revealed a compositional deviation with respect to the nominal design, especially in the Sb distribution. Certainly, although N atoms seem to be confined into the GaAsN layers exhibiting greater stability against interdiffusion, Sb atoms are spread along the whole structure. The precise control over the N position in the supperlattice is confirmed by atomic scale X-STM images in which individual N atoms are directly observed. The low contents of Sb and N unable the application of high angle annular dark field (HAADF) conditions in STEM images (Figure 1.b). Instead, ADF images are used, since N yields a brighter contrast due to the distortion that produces in the structure3,4 (Figure 1c) and compared with electron dispersive x-ray (EDX) maps acquired simultaneously, that allow us to determine the distribution and the overall content of Sb (Figure 1d). All these analysis pointed out to a lower incorporation both of Sb and N that depends on the period of the structure. More important, a strong interdiffusion of Sb is evidenced. The Sb content reaches its maximum value at the top of the GaAsSb layer and a minimum at the top of the GaAsN layer (Figure 2). As consequence, there is a phase difference between the ADF images and the EDX maps that must be taken in consideration. The system moves away from the original design, where the Sb content adopts a sawtooth distribution and the square superlattice structure is preserved mainly by the N distribution. The influence of the period of the superlattice on these effects is discussed.

Acknowledgments

We acknowledge the Spanish MICINN–MINECO for funding through Project MAT2013-47102-C2, and SCCYT-UCA for technical support.

References

1 A. Luque, J. Appl. Phys. 110, 031301 (2011)

2 J. M. Ulloa et al. Appl. Phys. Lett. 100, 013107 (2012)

3 M. Herrera et al. Phys. Rev. B, 80, 125211 (2009)

4 T. Grieb et al., Ultramicroscopy, 117, 15-23 (2012) 

 


Daniel F. REYES (Chiclana de la Frontera, Spain), Veronica BRAZA, Alicia GONZALO, Antonio D. UTRILLA, Davide F. GROSSI, Paul M. KOENRAAD,, Alvaro GUZMAN, Adrian HIERRO, Jose M. ULLOA, Teresa BEN, David GONZALEZ
Salle Gratte Ciel 1&2

"Tuesday 30 August"

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MS4-II
14:00 - 16:15

MS4: Complex materials and nanocomposites
SLOT II

Chairpersons: Rick BRYDSON (Chairperson, Leeds, United Kingdom), Marc SCHMUTZ (Chairperson, CNRS-UNISTRA, Strasbourg, France)
14:00 - 14:30 CryoTEM in Materials Science. Nico SOMMERDIJK (Invited speaker, EINDHOVEN, The Netherlands)
Invited
14:30 - 14:45 #5836 - MS04-OP250 Direct visualization and quantification of three-dimensional ferritin crystallization on the nanoscale.
Direct visualization and quantification of three-dimensional ferritin crystallization on the nanoscale.

We present the proof of concept that a real space tomography approach can be used for the quantification of local ordering in tiny crystals of ferritin. This work is driven by the need for a  fundamental understanding of crystal growth of weakly interacting proteins on a molecular level. At present, only tentative ideas exist about interactions in particular in solution and during crystallization. Offering simplicity and controllability the condensation of ferritin molecules from solution was chosen as an ideal system to get insight into the nucleation and crystallisation mechanism that leads to ordered crystals. 

The approach involves cryo-fixation of aging stages of ferritin condensation from solution and subsequent three-dimensional scanning transmission electron miscoscopy (STEM) tomography (Fig. 1a). Cryo-STEM tomograms were recorded and analysed to yield the three-dimensional ferritin particle coordinates for the real-space refinement of the structure of ferritin agglomerates. 3D pair correlation functions for ordered nanocrystals of a few hundred ferritin particles reproduce well and up to higher coordination shells the crystal structure that was reported from synchrotron experiments on macrocrystals. The local order within ferritin agglomerates is further refined quantitatively by order parameter mapping with the resolution of a single lattice site based on a data-base correlation technique (Fig. 1b).


Lothar HOUBEN (Rehovot, Israel), Haim WEISSMAN, Sharon WOLF, Boris RYBTCHINSKI
14:45 - 15:00 #5982 - MS04-OP253 Characterization of Janus gold nanoparticles obtained via spontaneous binary polymer shell segregation.
Characterization of Janus gold nanoparticles obtained via spontaneous binary polymer shell segregation.

Janus nanoparticles are nanoparticles (NPs) displaying two sides of different chemical nature which makes them of high interest. The formation of the Janus shell provides the NPs an amphiphilic character, which can therefore self-assemble in a tunable fashion by varying different experimental parameters such as size, polymer ratio and temperature. Here, Au NPs coated by polyethylene glycol (PEG) and both polystyrene (PS) and poly(N-isopropylacrylamide) (PNIPAM) were investigated. [1] The true Janus character of the NPs was determined by electron tomography. Characterization of polymer coated particles by electron microscopy is challenging due to the low contrast of the organic materials. The goal was to distinguish the two different polymers in two types of particles (PEG+PNIPAM and PEG+PS coated Au NPs). Different approaches were used to improve the contrast between the two polymers. The PEG+PNIPAM particles were characterized by specific staining of the hemispheres while the character of the PEG+PS particles was investigated by the growth of silica.

 

First, the PEG+PNIPAM coated NPs were stained with 3 mM CuSO4.5H2O solution to generate sufficient contrast in the Transmission Electron Microscope (TEM). PNIPAM-coated NPs showed damage of the polymer upon electron beam irradiation. For PEG-coated NPs a stable shell was observed. In an attempt to distinguish PNIPAM and PEG, PEG+PNIPAM coated particles were stained and investigated with TEM (Fig. 1). Since conventional TEM images are 2D projections from a 3D object, electron tomography was performed. It must be noted that the conventional technique for tomography in materials science, high angle annular dark field scanning TEM (HAADF-STEM), could not be applied due to the large difference in atomic number Z for Au and the elements in the polymer shell. Instead, Bright-Field TEM tomography was applied. Images were acquired over the largest possible range (-76° to +76°) every 2°, aligned and reconstructed by the SIRT (Simultaneous Iterative Reconstruction Technique) algorithm in the Astra Toolbox. [2] The obtained 3D reconstruction displayed rather low contrast between the shell and the background. Manual segmentation based on the orthoslices (xy-, yx- and zx-direction) could be carried out. This method provided a 3D reconstruction that clearly confirms the formation of stained half-shells (Fig. 3).

 

In the second case of PEG+PS coated Au NPs, an attempt of staining with calcium phosphate was carried out. In TEM images hemispheres could be observed, but selective staining could not be confirmed. Due to the high affinity of PEG by silica, PEG is able to act as a primer to promote silica condensation. Since PS is hydrophobic and does not allow silica nucleation, the silica shell was expected to occur only at the parts of the NPs that are coated by PEG (Fig. 2).

Either staining or silica shell growth over PEG-coated areas resulted in the observation of semi-shells (Janus character) in Au NPs by TEM and electron tomography.

 

[1] A. M. Percebom, et al., Chem. Comm., 52 (2016), 4278-4281.

[2] W.van Aarle, et al., Ultramicroscopy, 157, (2015), 35.

[3] The authors S.B. and N.C. gratefully acknowledge the European Research Council, ERC grant N°335078 – Colouratom.


Nathalie CLAES (Antwerpen, Belgium), Ana. M PERCEBOM, Juan J. GINER-CASARES, Sara BALS, Watson LOH, Luis M. LIZ-MARZÁN
15:00 - 15:30 #6345 - MS04-S75B Imaging Dynamic Processes in Liquids: Application for Batteries.
Imaging Dynamic Processes in Liquids: Application for Batteries.

The development of in-situ liquid stages for the (S)TEM presents many opportunities to study dynamic processes important for next generation energy storage, transport and conversion systems.  However, to use the microscope to study these systems we must be aware of the effect of the electron beam in controlling/altering the experiment. Fortunately, the effect of the beam current can be calibrated and understood in terms of its effect on the nucleation and growth of nanoparticles from solution.  Here, we demonstrate the beam effect by analyzing the degradation mechanisms in Li battery electrolytes. Figure 1 shows the degradation mechanisms for lithium hexafluoroarsenate (LiAsF6) in 1,3-dioxolane, DOL (Figure 1a) and dimethyl carbonate, DMC (Figure 1b). There are different mechanisms of breakdown in each case – the size, shape and morphology of the precipitates is different. These results demonstrate that the electron beam has the potential to mimic electrochemical reduction, and therefore must be taken into account during in-situ electrochemical measurements to ensure results are free from artifacts.

Having calibrated the electron dose for the particular electrolyte, we can now use an operando electrochemical cell to investigate the role and mechanism of electrolyte additives during Li deposition/stripping. We prepared two electrolytes, LiPF6 in propylene carbonate (PC) with different trace-amounts of water. Figure 2A shows a comparison of the cyclic voltammograms for the two electrolytes and Figure 2B shows the corresponding amount of Li deposited/stripped during these cycles (Figure 2C and D shows representative STEM images of the process). The higher concentration of water, leads to an increased concentration of highly conducting LiF in the SEI layer, leading to a larger grain size through increased diffusion of Li ions during battery cycling. SEM images show Li deposited on a Cu electrode surface in the presence of 10 ppm (Figure 2E) and 50 ppm (Figure 2F) of water at a current density of 1mA/cm2 for 15 h.  The Li deposits in the electrolyte containing 10 ppm shows a typical dendritic microstructure. However, the electrolyte with 50 ppm of water forms smooth, thin and dense dendritic layer. This result provides crucial insides into the performance of Li metal anodes and their successful incorporation into the next generation battery system.

 

Acknowledgments

This research is part of the Chemical Imaging LDRD Initiative at PNNL, a multi-program laboratory operated by Battelle for the U.S. DOE under Contract DE-AC05-76RL01830.  This work was partially supported by JCESR, an Energy Innovation Hub funded by DOE-BES. A portion of the research was performed using EMSL, a national scientific user facility sponsored by DOE-BER and located at PNNL. C.P. acknowledges support from the FSU COFRS Award 032968, the Ralph E. Powe Junior Faculty Enhancement Award, and NSF-CMMI-1334012.


B. Layla MEHDI (PNNL, USA), Andrew STEVENS, Ryan HUFSCHMID, Chiwoo PARK, Karl MULLER, Nigel BROWNING
Invited
15:30 - 15:45 #6275 - MS04-OP256 Atomic structure of the ultrathin amorphous aluminium oxide barrier in Al/AlOx/Al Josephson junctions.
Atomic structure of the ultrathin amorphous aluminium oxide barrier in Al/AlOx/Al Josephson junctions.

Amorphous materials are widely used in many technologically important devices and structures. In Josephson junctions, amorphous aluminium oxide film with a thickness of a few nanometers is used as tunnel barrier [1]. The atomic structure of this thin amorphous oxide film determines the tunnelling properties of the junction. However, the disordered nature, the miniaturized dimension and the close proximity to the adjacent crystalline contacts of the oxide barrier are challenging aspects of the direct investigation of the atomic structure of the tunnel barrier layer.

 

In this work, we have unveiled the microscopic structure of the ultrathin (<2 nm) aluminium oxide barrier in Al/AlOx/Al Josephson junctions via transmission electron microscopy. Scanning transmission electron microscopy (STEM) and electron energy loss spectroscopy (EELS) were used to reveal the detailed atomic structure and the chemical bonding in the junction. By combining nano-beam electron diffraction (NBED) and pair distribution function (PDF) analysis with reverse Monte Carlo (RMC) refinement [2] we unravelled the atomic structure of the nanosized AlOx barrier. The technique of combining NBED-PDF and RMC enabled us to treat the crystalline Al contacts and the amorphous AlOx barrier layer as integrated parts in the system and take the interfacial interaction between Al and AlOx into account while retrieving the atomic structure information.

 

The atomic structure of the AlOx tunnel barrier layer resembles the structure in bulk Al2O3 in terms of bond length distribution, bond angle distribution, and connectivity of the elemental structure units. However, the average coordination number of the Al atoms in the barrier is around 3.4, which is lower than that in other amorphous aluminium oxide systems [3]. The combined NBED and RMC simulation showed that the miniaturized dimension of the oxide barrier and the presence of the interfacial interaction between crystalline Al and amorphous AlOx give rise to an oxygen deficiency at the metal/oxide interfaces in the junction. This is of importance since atomic defects such as oxygen vacancies at the interfaces are possible origins of the two-level systems that contribute to the decoherence and noise in superconducting quantum circuits based on Josephson junctions.

 

[1] Oliver, W. D. & Welander, P. B. Materials in superconducting quantum bits. MRS Bull. 38, 816–825 (2013).

[2] Cockayne, D. J. H. The study of nanovolumes of amorphous materials using electron scattering. Annu. Rev. Mater. Res. 37, 159–187 (2007).

[3] Gutiérrez, G. & Johansson, B. Molecular dynamics study of structural properties of amorphous Al2O3. Phys. Rev. B 65, 104202 (2002).


Lunjie ZENG (Gothenburg, Sweden), Dung Trung TRAN, Cheuk-Wai TAI, Gunnar SVENSSON, Eva OLSSON
15:45 - 16:00 #6273 - MS04-OP255 Structure determination of a disordered, complex zeolite by combining rotation electron diffraction and HRTEM.
Structure determination of a disordered, complex zeolite by combining rotation electron diffraction and HRTEM.

Zeolites are porous materials with important industrial applications [1]. Their structures are complex, and sometimes disordered which makes their structure characterization difficult using conventional methods. Electron diffraction (ED) combined with high resolution transmission electron microscopy (HRTEM) is a very powerful method for determination of complex or disordered structures from nano-and submicron-sized crystals. In this work, we used Rotation Electron Diffraction (RED) [2] combined with HRTEM imaging and powder X-ray diffraction (PXRD) to solve and characterize the structure of the complex germanosilicate IM-18 [3]. The RED method combines discrete goniometer tilt steps (2.0-3.0°) with fine beam tilt steps (0.05-0.20°) to collect 3D ED data from a single particle. More than 1000 ED frames can be collected in less than one hour. Moreover, both sharp spots and diffuse streaks indicating the disorder could be seen from the 3D reciprocal lattice reconstructed from the RED data. IM-18 was first prepared more than 8 years ago, but its structure remained unsolved [3]. RED data of IM-18 consisting of 649 ED frames were collected covering a tilt range of 119.46° with a tilt step of 0.20°. RED data were collected at 200 kV using the software RED – data collection on a JEOL JEM2100 TEM. The RED data processing software was used for unit cell determination, indexing, and intensity extraction.

We have developed a method and a software, QFocus, for structure projection reconstruction from a through-focus series of HRTEM images acquired with a constant step of defocus changes [4]. The defocus value and two-fold astigmatism were then determined for each image in the series. A contrast transfer function (CTF) correction was performed on each image and a final image representing the projected potential of the specimen was reconstructed by averaging all CTF-corrected images. Several through-focus series of 12 HRTEM images with a defocus step of 85.3Å were taken from IM-18 along the b-axis, and the structure projections were reconstructed using QFocus.

The unit cell parameters of IM-18 were obtained from the 3D reciprocal lattice reconstructed from the RED data (Fig. 1), and refined against the PXRD data. The crystal of IM-18 is monoclinic (P2/m) with a = 10.336 Å, b = 14.984 Å, c = 17.734 Å, β = 106.9° (Fig. 2A). The structure was solved from the RED intensities by using direct methods and further confirmed by using HRTEM images (Fig. 2B) and PXRD data. IM-18 contains three-dimensional intersecting channels defined by 8, 10, 8 vertex-sharing (Ge, Si)O4 tetrahedra along a-, b- and c-axis, respectively. Disorder was determined from the reconstructed HRTEM images (Fig. 2C).

We have shown here that the RED method can help to solve the structures from diffraction intensities and give the information about the disorder in the materials. The structure projection reconstruction method is important for beam sensitive materials, because it allows fast data collection without the need of manually optimizing the defocus. The contrast of the reconstructed HRTEM image is greatly improved and the image can be directly interpreted in terms of structure projection.

Acknowledgments

This project is supported by the Swedish Governmental Agency for Innovation Systems (VINNOVA) and the Swedish Research Council (VR), and the Knut and Alice Wallenberg Foundation (KAW) through a project grant 3DEM-NATUR.

 

References

1) M. E. Davis, Nature, 2002, 417, 813-821.

2) W. Wan, J. Sun, J. Su, S. Hovmöller, X. Zou, J. Appl. Cryst. 2013, 46, 1863-1873.

3) Y. Lorgouilloux, J.-L. Paillaud, P. Caullet, J. Patarin, N. Bats, French patent 2,923,477. 2007 Nov 11.

4) W. Wan, S. Hovmöller, X. Zou, Ultramicroscopy, 2012, 115, 50-60.


Magdalena Ola CICHOCKA (Stockholm, Sweden), Yannick LORGOUILLOUX, Jie SU, Yifeng YUN, Wei WAN, Nicolas BATS, Jean-Louis PAILLAUD, Xiaodong ZOU
16:00 - 16:15 #6629 - MS04-OP257 Electron tomography combined with electron diffraction reveals the dissolution and phase transformation of KFI to CHA zeolites.
Electron tomography combined with electron diffraction reveals the dissolution and phase transformation of KFI to CHA zeolites.

Introduction

Microporous alumminosilicates, zeolites, have been implemented in a large number of important industrial applications.[1] Their unique properties are to a large extent determined by their unique micropore structures with pores in the size range of small molecules. Though providing unique properties, the micropores also introduce obstacle when it comes to efficient mass transfer in the material. Introducing porosity on larger length scales will enhance the diffusion properties as well as increasing the accessibility to the chemically active micropores. In addition transformations between different zeolite phases with characteristic pore structures may be observed. Through electron tomography important knowledge about the internal pore structure can be obtained. By linking the results to information about the present crystalline phases, relationship between morphology, crystal structure and the relative orientation of intergrowing crystals from electron diffraction and high resolution TEM (HRTEM) imaging a comprehensive understanding of the material and its crystallization can be obtained.

Results and discussion

Micrometer sized single crystals of a cubic KFI zeolite were treated in in a controlled dissolution process with 1.2M Potassium hydroxide. This treatment partially dissolves the KFI crystals and creates a very peculiar sponge like morphology, see Fig 1a. The overall cubic morphology of the crystals was however preserved. Selected area electron diffraction (SAED) could confirm that the crystal despite its spongy texture remained a single crystal of KFI, Figure 1b.

In order to study the internal structure of the KFI crystals electron tomography was performed. A tilt series of 69 ADF-STEM projection images collected in the range of -76 - +60 degrees with a 2° tilt increment was used for the reconstruction. The reconstruction was performed using a SIRT reconstruction algorithm implemented in the ASTRA toolbox [2]. The electron tomography reconstruction clearly shows that the porosity penetrates through the entire spongy cubic crystal of KFI zeolite, see Fig 2 b-c. Both the tomography reconstruction as well as the ADF-STEM and HRTEM images, see Fig 1a and 2a, shows that some of the pores have a preference to run from the edges towards the center. From the HRTEM images in Fig xx it can be observed that the preferred termination surfaces are and surfaces.

 

Bright field TEM images shows that after the controlled dissolution process additional smaller well facetted crystals form on top of the micrometer sized spongy KFI cubes, see Fig XX. Through the use of SAED the smaller crystals could be identified to be a different trigonal zeolite, chabazite. The Potassium ions present during the dissolution direct the growth of chabazite based on the KFI structure. Interestingly the KFI and chabazite structures are intimately related as they are entirely built from the same building unit of 12 SiO4 tetrahedrons, called a double 6-ring. The only difference between the two structures is the packing of this building unit. The SAED patterns shows that the cubic KFI zeolite grows along its directions and that the chabazite crystals tend to grow epitaxially with its [101] direction aligned along the [100] direction of the KFI crystals structure.

 

Acknowledgments

T.W. acknowledges a Postdoctoral grant from the Swedish research council. S.B. acknowledges financial support in the form of an ERC starting grant.

 

References

1) Davis, M. E. Nature, 2002, 417, 813-821.

2) van Aarle, W., Bals, S., Sijbers, J. et. al. Ultramicroscopy, 2015, 157, 35-47

3) L. Van Tendeloo, E. Gobechiya, E. Breynaert, J. A. Martens and C. E. A. Kirschhock, Chemical communications, 2013, 49, 11737-11739.


Tom WILLHAMMAR (Antwerp, Belgium), Leen VAN TENDELOO, Eric BREYNAERT, Johan MARTENS, Christine KIRSCHHOCK, Sara BALS
Salle Tête d'or 1&2

"Tuesday 30 August"

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LS2-I
14:00 - 16:15

LS2: Cell organisation and dynamics
SLOT I

Chairpersons: Isabelle ARNAL (Chairperson, Grenoble, France), Chris HAWES (Chairperson, Oxford, United Kingdom), Eija JOKITALO (Chairperson, University of Helsinki, Finland)
14:00 - 14:30 #8358 - LS02-S05 Probing cell behavior: Combining MEMS (microelectromechanical systems) technology with high resolution live cell imaging.
Probing cell behavior: Combining MEMS (microelectromechanical systems) technology with high resolution live cell imaging.

Cell biological experimentation has benefitted from the development of microdevices based on microfluidics and MEMS (microelectromechanical systems) technology. These devices exploit the possibility to create microscopic 3D structures that can be used to manipulate single cells. Furthermore, microdevices can be used to miniaturize laboratory functions (Lab-on-a-Chip). We developed an experimental platform with the specific aim to study tip growing cells, the TipChip [1]. The device allows positioning of single cells such as pollen grains or fungal spores at the entrances of serially arranged microchannels harboring microscopic experimental setups. The transport of the cells is mediated by fluid-flow. Once positioned in the device, the tip growing cells, pollen tubes, filamentous yeast or fungal hyphae, can be exposed to chemical gradients, microstructural features, integrated biosensors or directional triggers. The device is compatible with Nomarski optics and fluorescence microscopy and can thus be used for live cell imaging. Using the TipChip platform we investigated the growth mechanism in pollen tubes. The pollen tube is a cellular transport system that is generated to connect the male gametophyte with its female counterpart. Through this catheter-like protuberance the sperm cells are delivered from the pollen grain to the ovule nestled deep within the pistillar tissues. To be competitive, the pollen tube elongates extremely rapidly and it has to do so against the impedance of the apoplast of the transmitting tissue and through the maze of pistillar cells that separate the pollen grain from the ovule. Using calibrated micro-cantilevers we quantified the invasive force of the pollen tube and we found that sperm cell discharge can be triggered by mechanical constriction [2]. Further applications include exposure of cells to precisely calibrated electric fields and micron-sharp, tunable chemical gradients. The TipChip is therefore a highly versatile tool for the combined quantitative biophysical and optical investigation of polar growth in plant cells.

 

 

 

References

[1] Agudelo CG, Sanati Nezhad A, Ghanbari M, Naghavi M, Packirisamy M, Geitmann A. 2013. TipChip – a modular, MEMS (microelectromechanical systems)-based platform for experimentation and phenotyping of tip growing cells. Plant Journal 73:1057-1068

[2] Sanati Nezhad A, Naghavi M, Packirisamy M, Bhat R, Geitmann A. 2013. Quantification of cellular penetrative forces using Lab-on-a-Chip technology and finite element modeling. PNAS 110: 8093–8098


Anja GEITMANN (Quebec, Canada)
Invited
14:30 - 15:00 #7814 - LS02-S06 Structure and dynamics of the endoplasmic reticulum in cultured mammalian cells.
Structure and dynamics of the endoplasmic reticulum in cultured mammalian cells.

The endoplasmic reticulum (ER) is a large, single-copy, membrane-bound organelle that comprises an elaborate 3D network of structurally diverse subdomains: highly curved tubules, flat sheets, and parts that form contacts with nearly every other organelle of the cell. The ER is essential for the synthesis, modification, and transport of membrane and secretory proteins; it is also the site of cytosolic calcium level regulation and synthesis and transport of several lipids. To accommodate the vast range of functions, the ER network spreads throughout the cell, and its functions are distributed into structural subdomains according to their specific requirements. Many structural determinants of the network formation and maintenance have been described; however, it is not yet understood e.g. how different functions are distributed to the various subdomains, why the ER is constantly rearranging its architecture, and how the sheet/tubule –balance is maintained.
Proper ER operation requires an intricate balance within and in-between dynamics, morphology, and functions. While ER structure is in constant flux, it does not move en masse, and the network movement is achieved through dynamics of individual subdomains and through network remodelling, which are accomplished through interactions with the cytoskeleton. Combining live cell imaging, thin section TEM and two 3D-EM methods, we show that dynamic microtubules and actin filament arrays together contribute to the maintenance of ER sheet-tubule balance. Perturbations of microtubule or actin cytoskeleton readily shift the balance towards tubules or sheets, which in turn can result in formation of sheet remnants or long and less fenestrated abnormal sheets. We recently identified the unconventional motor protein myosin 1c localizing to and regulating the ER associated actin filament arrays. Manipulation of myo1c levels disturbed the dynamics of actin arrays and affected ER sheet morphology similarly to actin manipulations with drugs. Tubular ER phenotype of myo1c-depleted cells could be rescued with wild type myo1c, but not with a mutated form lacking the actin binding domain. We propose that ER -associated actin filaments have a role in maintaining the ER sheet-tubule balance and sheet structure by regulating sheet remodeling events, and thus support the maintenance of sheets as a stationary subdomain of the otherwise dynamic ER network.
Knowledge of the mechanisms behind the structural maintenance and dynamics will be the key towards deeper understanding of ER functions and their regulation, and eventually, in unravelling molecular mechanisms behind various ER-associated diseases.


Merja JOENSUU, Ilya BELEVICH, Helena VIHINEN, Darshan KUMAR, Olli RÄMÖ, Behnam LAK, Eija JOKITALO (University of Helsinki, Finland)
Invited
15:00 - 15:30 #8624 - LS02-S07 How do plants read their own shape ?
How do plants read their own shape ?

There is accumulating evidence that single cells in culture can sense mechanical cues to control their division, their growth and their fate. In a multicellular context, this implies that a given cell can use growth-derived stress and shape-derived stress to control its behavior. In this scenario, the presence of mechanical forces in tissues may thus be a way for the cell to know its position and control its differentiation accordingly, during development. Whereas this question is difficult to explore in animals, the relatively slow growth and simpler mechanics in plants make them ideal systems to investigate the contribution of “positional mechanical signals” in development. To illustrate this idea, I will present the microtubule response to mechanical stress in Arabidopsis at three different scales: at the single cell level, using the jigsaw puzzle shaped pavement cells; at the tissue scale, using the crease-shape boundary domain of the shoot apical meristem; at the whole organ scale, using the sepal, which exhibits a very reproducible shape despite high variability at the cell level. Beyond the cytoskeleton, mechanical cues are also controlling gene expression and our recent data suggest that the perception of mechanical stress acts in parallel to major hormones, like auxin, to regulate some of the master regulators of the shoot apical meristem. Altogether, this provides a picture in which mechanical forces add robustness to plant morphogenesis, by channeling the dynamics of cell effectors and molecular pathways.


Olivier HAMANT (LYON CEDEX 7)
Invited
15:30 - 15:45 #6579 - LS02-OP013 The 3-D organisation of the plant endomembrane system.
The 3-D organisation of the plant endomembrane system.

Recent advances in high resolution field emission scanning electron microscopy combined with the ability to section resin blocks within the microscope specimen chamber have revolutionised our ability to study cell structure in three dimensions.   Serial Block Face Scanning Electron Microscopy (SBFSEM) permits the collection of large three dimensional data sets from resin embedded material.  One of the major limitations of the technique is generating sufficient contrast in the specimen prior to resin embedding to permit sequential collection of relatively high magnification images. We use selective staining of membranes using the zinc iodide/osmium tetroxide impregnation technique to selectively highlight membranes of the secretory pathway. In this way the organisation of nuclear envelope, endoplasmic reticulum and Golgi membranes can be studied through reconstructions of data sets obtained from the Gatan 3-View system and reconstructed using Amira or Imaris.  Here we will describe the use of this technique to investigate the organisation of the endoplasmic reticulum in dividing root meristematic calls and the relationship between Golgi bodies and the tubular endoplasmic reticulum.


Chris HAWES (Oxford, United Kingdom), Maike KITTELMANN, Louise HUGHES
15:45 - 16:00 #5933 - LS02-OP012 A complex prokaryotic endomembrane system.
A complex prokaryotic endomembrane system.

Compartmentation is generally considered a feature of eukaryotic cells. One exception in the "prokaryotic world" is the marine hyperthermophilic Crenarchaeon Ignicococcus that exhibits a large inter-membrane compartment (IMC) between an inner (cytoplasmic) and an outer (cellular) membrane (CM and OCM) [1]. In addition, I. hospitalis supports the propagation of another archaeon - Nanoarchaeum equitans - on its surface [2]. Cryopreparation in combination with 3D methods (serial sectioning, FIB/SEM and electron tomography) enabled us to deliver a comprehensive insight into the anatomy of I. hopitalis and its contact to N. equitans. The 3D-models obtained, reveal a highly complex and dynamic endogenous membrane system with putative secretory function: The IMC makes up ~40% of the whole cell volume on average, but in few cells, it can reach an extent much larger than the volume of the cytoplasm. In the IMC, elongated protrusions of the cytoplasm are present. Apparently, these structures can constrict from or fuse with the CM or themselves. We also observed interactions of these protrusions with the OM via macromolecular, cylindrically shaped complexes. All interacting structures are connected via thin filaments (~3-6 nm in diameter), that span through the whole IMC and are presumably responsible for membrane dynamics. In addition, homologues in sequence and/or structure to eukaryotic proteins can be found in Ignicoccus, that are putatively involved in the system like their eukaryotic counterparts: small GTPases (Sar1/Arf like), Coatomer proteins, Sec61ß, proteins of the ESCRT-III system, a tethering complex component (Bet3) and the ATPase CDC48/p97 [3, 4]. Since Ignicoccus belongs to the recently proposed TACK superphylum, that is considered a sister group of eukaryotes [5], it is also tempting to speculate about a prokaryotic origin of the eukaryotic endogenous membrane system. Regarding the contact of N. equitans to I. hospitalis, a fusion of cytoplasms of both organisms was revealed, providing an important complement and explanation to recent proteomic [4], transcriptomic [6] and metabolomic [7] studies on this inter-archaeal system.

[1] Rachel et al., Archaea 1 (2002), 9

[2] Huber et al., Nature 417 (2002), 63

[3] Podar et al., Biology Direct 3 (2008), 2

[4] Giannone et al., PLOS One 6(8) (2011), e22942

[5] Guy & Ettema, Trends in Microbiology 19(12) (2011), 580

[6] Giannone et al., ISME Journal 9 (2015), 101

[7] Hamerly et al., Metabolomics, 11(4) (2015), 895

[8] supported by a grant of the Deutsche Forschungsgemeinschaft (DFG)


Thomas HEIMERL (Marburg, Germany), Jennifer FLECHSLER, Gerhard WANNER, Reinhard RACHEL
16:00 - 16:15 #6693 - LS02-OP015 Spatial relation of organelle membranes in the coccolith forming marine alga Emiliania huxleyi.
Spatial relation of organelle membranes in the coccolith forming marine alga Emiliania huxleyi.

The  marine unicellular alga Emiliania huxleyi forms a shell of calcite scales called coccoliths. It can form large blooms and thus is the most important sink for marine CO2 responsible for 33% of the marine CaCO3 production [1]. The coccoliths are first formed intracellular within an organelle called the coccolith vesicle and then leave the cell and interlock with one another to form the shell. Calcium ions required for calcite formation need to be transported from the external medium to the coccolith vesicle, raising the question of compartmentation of calcium ions during its way through the cell to the growing coccolith. Current hypotheses suggest influx of calcium through plasma membrane calcium channels, uptake from the cytoplasm in peripheral cisternae of the smooth endoplasmic reticulum, and vesicular transport to Golgi cisternae. Further accumulation of calcium is thought to occur within Golgy cisterns and Golgi vesicles via a V-type H+-ATPase driven Ca2+/H+-exchange mechanism before the vesicles fuse with the coccolith vesicle [2].

In order to contribute to the understanding in organelle interactions during coccolith formation, we used STEM tomography of high pressure frozen and freeze substituted E. huxley as well as chemically fixed material. The coccolith vesicle is confluent with membrane bound cisterns of an organelle called the reticular body. STEM tomography reveal seams of peculiar 7-10 nm thick particles at the inner side of membranes of the reticular body, Golgi cisterns and Golgy vesicles (Figure 1) suggesting that the latter fuse with the reticular body. In early stages the coccolith vesicle is devoid of these particles, however, they can be found in later stages, suggesting that the reticular body contributes to the growth of the coccolith vesicle. The coccolith vesicles is always close to the nuclear envelope [3]. Only in late stages just before the extrusion of the coccolith into the external medium it is apart from the nucleus. In these cases we often find a second coccolith growing within a young coccolith vesicle. Cryofixation followed by freeze substitution revealed that the coccolith vesicle forms a close junction with the outer membrane of the nuclear envelope (Figure 2). Over a distance of 500 nm and more this junction maintains a constant gap of about 4 nm between the two membranes. This finding opens the possibility of another pathway of calcium ions required for coccolith formation. The nuclear envelope is continuous with endoplamic reticulum and is thus part of the large intracellular calcium store having a calcium concentration between 100 and 300 mM [4] and contains calcium release channels required for calcium signalling [5]. Therefore, we propose a model in which calcium ions from the endoplasmic reticulum are released at the site of the junction of the nuclear envelope with the coccolith vesicle causing a large local increase of calcium within the gap between the adjacent membranes, which facilitates quick uptake of calcium into the coccolith vesicle by a Ca2+/2H+ exchange mechanism [6].

[1] M. D. Iglesias-Rodriguez et al. (2008). Science, 320 (5874): 336-340

[2] C. Brownlee and A. Taylor (2004). In: Thierstein H.R., Young, J.R. (Eds.), Coccolithophores.

     From molecular processes to global impact. Springer, Berlin, Heidelberg. pp. 31-49,

[3] P. Westbroek et al (1989). J. Protozool. 36, 368-373.

[4] O.H. Petersen et al (1998). Cell Calcium 23, 87-90.

[5] O.V. Gerasimenko et al (1996) Eur. J. Physiol. 432, 1-6.

[6] L. Mackinder et. al. (2011). Environ. Microbiol. 13, 3250-3265.


Andreas ZIEGLER (Ulm, Germany), Xiaofei YIN, Erika GRIESSHABER, Lothar MIERSCH, Thorsten B. REUSCH, Paul WALTHER, Wolfgang W. SCHMAHL
Salon Tête d'Or

"Tuesday 30 August"

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SCUR - V
14:00 - 17:45

Annual SCUR meeting
SLOT V

14:00 - 15:10 Session 5. Oral communications.
15:10 - 16:00 Invited lecture 3: Bedside assessment of multiphoton fluorescence lifetime imaging - from morphology to biochemical state. Volker HUCK (Invited speaker, Mannheim, Germany)
16:30 - 17:30 Session 5. Oral communications.
17:30 - 17:45 Announcement of the prizes and closing of the SCUR meeting.
Salle Gratte Ciel 3
16:45

"Tuesday 30 August"

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EMS GC
16:45 - 19:45

EMS General Council

Salon Tête d'Or
Wednesday 31 August
08:45

"Wednesday 31 August"

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PL4
08:45 - 09:45

Plenary Lecture 4

08:45 - 09:45 Plenary Lecture 4. Hirofumi YAMADA (Plenary Speaker, Kyoto, Japan)
Amphithéâtre
10:15

"Wednesday 31 August"

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MS6-II
10:15 - 12:30

MS6 : Oxide-based, Magnetic and other Functional materials
SLOT II

Chairpersons: Etienne SNOECK (Chairperson, CEMES, Toulouse, France), Maria VARELA (Chairperson, Madrid, Spain)
10:15 - 10:45 #6341 - MS06-S81 Atomic structures and dynamic behaviors of domain walls in ferroelectric thin films.
Atomic structures and dynamic behaviors of domain walls in ferroelectric thin films.

Ferroelectric materials are characterized by a spontaneous electric polarization that can be reoriented between different orientations by an applied electric field.  The ability to form and manipulate domains with different polarization orientations at the nanometer scale is key to the use of ferroelectric materials for devices such as nonvolatile memories.  The ferroelectric switching occurs through the nucleation and growth of favorably oriented domains and is strongly mediated by defects and interfaces. Thus, it is critical to understand how the ferroelectric domain forms, grows, and interacts with defects.  Here, we demonstrate the ability of studying the atomic structure and dynamic behaviors of ferroelectric domain walls using the state-of-the-art atomic-resolution scanning transmission electron microscopy (STEM) and in situ transmission electron microscopy (TEM) techniques.

Figure 1a shows a high-angle annular dark-field (HAADF) image of a BiFeO3 thin film in [100] pseudocubic orientation. With a quantitative analysis of this image, the displacement (DFB) vector was determined, which is measured by the displacement of the Fe position (which is located in the center of an oxygen octahedron) from the center of its four Bi neighbors. The vector DFB as the manifestation of the ferroelectric polarization in BiFeO3, points toward the center of the negative oxygen ions (Fig. 1b), and thus can be used to determine the polarization vector in the image plane. Using the polarization mapping technique based on HAADF imaging, we found that a localized vortex domain structure can be formed at the termination of 109° domain walls at the BiFeO3/TbScO3 interface. While in thicker (20 nm) BiFeO3 films (Fig. 1c), the vortex is accompanied by triangular domains consist of a mirrored pair of inclined 180° domain walls in conjunction with the previously existing 109° domain wall; no obvious triangular nano-domain patterns are observed in thinner (5 nm) films (Fig. 1d), and instead, the polarization vectors rotate smoothly to form a vortex core. These observations indicate that the configuration of the spontaneous flux-closure domains strongly depends on the size of the system, suggesting a potential method to tune the polarization vortex structures for practical devices.

Figure 2 shows in situ switching of domains in a 20 nm thick BiFeO3 films grown on TbScO3 substrate by applying a bias between a W probe and an epitaxial La0.7Sr0.3MnO3 bottom electrode. A charged domain wall (CDW) can be created by applying a bias (Fig. 2a). The initial stable structure (Fig. 2b) contained 109° and 180° domain walls separated by 10 nm at the substrate interface. The onset of domain wall motion occurred at a critical bias of 1.7 V (Fig. 2c). As the bias increases, the two 109° and 180° domain walls moved toward each other until they intersected (Fig. 2d). Then further shrinkage of the triangular domain led to upward motion of the triangular domain tip and resulted in the formation and elongation of a CDW (Fig. 2e,f). After the bias was removed, a stable state of the CDW remained (Fig. 2g). Such switching processes involving the evolution of CDWs result in significant changes in the local resistance of the film, suggesting the CDW may play an important role in future memory devices. 

   

References:

[1] C. T. Nelson, etc., Nano Letters 11 (2011), 828-834.

[2] This work was supported by the US Department of Energy (DOE) through the grant DE-SC0014430.


Xiaoqing PAN (, USA), Linze LI
Invited
10:45 - 11:00 #5897 - MS06-OP282 Polar-graded multiferroic SrMnO3 thin films.
Polar-graded multiferroic SrMnO3 thin films.

Engineering defects and strains in oxides provides a promising route for the quest of thin film
materials with coexisting ferroic orders, multiferroics, with efficient magnetoelectric coupling at
room temperature. Indeed, precise control of strain gradients would enable custom tailoring of
multiferroic properties, but presently remains challenging.

Here we use aberration-corrected scanning transmission electron microscopy (STEM) to explore

the existence of a polar-graded state in epitaxially-strained antiferromagnetic SrMnO3 thin films,

whose polar nature was predicted theoretically [1] and recently demonstrated experimentally [2].
Combining annular bright field (ABF) with high angle annular dark field (HAADF) imaging we
map at the atomic scale level the cation-oxygen dipole distortion far from (Figure 1) and near to
the domain walls (Figure 2). Local deformation analyses reveal a particular strain state where
flexoelectricity –the coupling between strain gradients and polarization– induce a rotation of the
in-plane ⟨110⟩ electric polarization due to ⟨001⟩ strain gradients. The analysis of the local Mn
oxidation state by electron energy loss spectroscopy (EELS) reveals that the strain gradients are
related to a gradual distribution of oxygen vacancies across the film thickness. Here we present a
chemistry-mediated route to induce flexoelectric polar rotations in oxygen-deficient multiferroic
films with potentially enhanced piezoelectricity.


References
[1] Lee, J. H.; Rabe, K. M. Phys. Rev. Lett. 2010, 104 (20), 207204.
[2] Becher, C.; Maurel, L.; Aschauer, U.; Lilienblum, M.; Magén, C.; Meier, D.; Langenberg,
E.; Trassin, M.; Blasco, J.; Krug, I. P.; Algarabel, P. A.; Spaldin, N. A.; Pardo, J. A.; Fiebig, M.
Nat. Nanotechnol. 2015, 10, 661–665.


Roger GUZMAN, Roger GUZMAN (Bellaterra, Spain), Laura MAUREL, Eric LANGENBERG, Andrew R. LUPINI, Pedro A. ALGARABEL, José A. PARDO, César MAGÉN
11:00 - 11:15 #5928 - MS06-OP283 Control of octahedral rotations via octahedral connectivity in an epitaxially strained [1 u.c.// 4 u.c.] LaNiO3/LaGaO3 superlattice.
MS06-OP283 Control of octahedral rotations via octahedral connectivity in an epitaxially strained [1 u.c.// 4 u.c.] LaNiO3/LaGaO3 superlattice.

ABO3 provskites represent a board spectrum of intriguing functionalities such as metal-insulator transitions, multiferroicity, colossal magnetoresistance and superconductivity owing to the strong correlation between charge, spin and orbital degrees of freedom [1]. In recent years, heterostructures and superlattices formed by two or more different ABO3 perovskites have  received intense research interest. Due to the electronic and structural reconstructions at the heterointerfaces, novel phenomena may emerge opening the way to novel functionalities that are not accessible in their bulk counterparts [2].  In ABO3 perovskites, the magnetic and electronic states are strongly coupled to the B-O-B bond angles and B-O bond lengths. Therefore, precise control of the BO6 octahedral rotations and distortions via epitaxial strain and interfacial octahedral connectivity offers a promising route to tailoring the material properties in a controllable way [3].

In our previous study of a [(4 u.c.// 4 u.c.) ×8] LaNiO3/LaGaO3 superlattice grown on (001) SrTiO3 by using aberration-corrected high-resolution transmission electron microscopy (AC-HRTEM), we have shown that the response of NiO6 rotations to epitaxial strain in the LaNiO3/LaGaO3 superlattice is significantly different from that in LaNiO3 thin films [4]. In LaNiO3 thin films, epitaxial strain effectively modifies the NiO6 rotational magnitudes throughout the entire film therefore stabilizing new electronic and magnetic states [3]. However, in the [(4 u.c.// 4 u.c.) ×8] LaNiO3/LaGaO3 superlattice, the [100] and [010] rotational magnitudes of NiO6 and GaO6 relax to the bulk values of LaNiO3 and LaGaO3 even though the superlattice is still coherently strained.

Here, we investigated the local octahedral rotations in a [(1 u.c.// 4 u.c.) ×13] LaNiO3/LaGaO3 superlattice grown on a (001) SrTiO3 substrate. Figure 1 shows the atomic models of bulk LaNiO3 and LaGaO3 and the simulated [110] AC-HRTEM images. Figure 2 represents an experimental AC-HRTEM image near the surface of the superlattice. We found that, due to the octahedral connectivity at LaNiO3-LaGaO3 interfaces (see Fig. 1e), the octahedral rotations of NiO6 adopted the same [100] and [010] rotational magnitudes as the neighbouring GaO6 till the surface of the superlattice. Our results indicate that in LaNiO3 based superlattices, the octahedral rotations of NiO6 can be precisely controlled via interfacial octahedral connectivity when the thickness of the LaNiO3 layer is reduced to 1 unit cell.

[1] Imada M, Fujimori A, Tokura Y (1998) Metal-insulator transitions, Rev. Mod. Phys. 70:1309-1263

[2] Hwang HY, Iwasa Y, Kawasaki M, Keimer B, Nagaosa N, Tokura Y (2012) Emergent phenomena at oxide interfaces, Nat. Mater. 11:103-113

[3] Rondinelli JM, May SJ, Freeland JW (2012) Control of octahedral connectivity in perovskite oxide heterostructures: an emerging route to multifunctional materials discovery, MRS Bull. 37:261-270

[4] Qi HY, Kinyanjui MK, Biskupek J, Geiger D, Benckiser E, Habermeier HU, Keimer B, Kaiser U (2015) Local octahedral rotations and octahedral connectivity in epitaxially strained LaNiO3/LaGaO3 superlattices, J. Mater. Sci. 50:5300-5306

[5] We are grateful to Sabine Grözinger for cross-section TEM sample preparation. We gratefully acknowledge the financial support by the German Research Foundation (DFG) and the Ministry of Science, Research and the Arts (MWK) of the state Baden-Württemberg within the DFG: KA 1295/17-1 project.


Haoyuan QI (Ulm, Germany), Michael KINYANJUI, Xiaodan CHEN, Johannes BISKUPEK, Dorin GEIGER, Eva BENCKISER, Hanns-Ulrich HABERMEIER, Bernhard KEIMER, Ute KAISER
11:15 - 11:30 #6219 - MS06-OP287 Direct observation of interfacial coupling of oxygen octahedra and its impact on ferromagnetic order in La0.7Sr0.3MnO3/SrTiO3 epitaxial heterostructures.
MS06-OP287 Direct observation of interfacial coupling of oxygen octahedra and its impact on ferromagnetic order in La0.7Sr0.3MnO3/SrTiO3 epitaxial heterostructures.

La0.7Sr0.3MnO3/SrTiO3 (LSMO/STO) heterostructures have been intensively studied because of large values of tunnel magnetoresistance (TMR), which make it a promising material for spintronic devices based on magnetic tunneling junctions. However, the “dead-layer” behavior of the manganite layers, a quick decay of the magnetoresistance and metallicity with the decreasing thickness and eventually insulating behavior below certain critical thickness (4-7 u.c.), hinder the applications. The origins of this behavior were reported to be strongly related to the interfacial reconstruction, such as magnetic and orbital coupling, epitaxial strain, and carrier doping charge-effect.[1-2] Recently it has been also recognized that the metal-oxygen bonding modification due to oxygen octahedral tilt can also play an important role in the magnetism double-exchange interaction.[3-4] However, an atomistic understanding of how oxygen octahedral distortions are introduced to accommodate octahedral mismatch at a heterointerface is still a challenge because it requires a precise simultaneous determination of the positions of metal cations and oxygen.

We used the annular bright-field (ABF) imaging in a Cs-corrected scanning transmission electron microscope (STEM, JEOL ARM200F) to image directly both heavy cations and oxygen atoms in the real space. Two samples grown on cubic STO(100) substrate were studied: (a) a sandwich-like sample consisting of two LSMO layers of 10 and 20 u.c thick, separated by a 3 u.c thick STO middle layer; (b) a multilayer sample with LSMO-STO  consisting of 15 bilayers of 3-4 u.c LSMO and 6 u.c. STO. Magnetometry measurements showed that the LSMO layers of the trilayer sample had large Curie temperature for the onset of ferromagnetic order (larger than 250 K) while the LSMO-STO multilayer had a very low Curie temperature of less than 50 K and a very low magnetization, indicating very poor magnetic order. In Fig.1(a), a high magnification STEM-ABF image of LSMO at the 2nd layer (20 u.c.) is shown which is far from the strained interface and well present a bulk-like LSMO structure. The corresponding atomic model of LSMO with MnO6 tilt a-a-c- is also shown under the ABF image, where we can see clearly the oxygen octahedra with the anti-phase tilting of ~10o along [110] axis. The quantitative analysis of oxygen octahedral tilt angle is done for both samples, as shown in Fig.1 (b) and (c). At the interface between STO substrate and LSMO in both samples, a clear suppression of oxygen octahedral tilt of LSMO in the first 2-3 u.c. is found, and then the tilt gradually recovers when it is away from the interface, until reaching the bulk value at around 9th u.c. (as seen in the Fig.1 (b) 2nd LSMO layer). Moreover, the 3 u.c. thick LSMO layers in the multilayer are highly distorted and have a suppressed octahedral tilt of lower than 5o, which can well explain the degradation of their ferromagnetic order and transport properties. Interestingly, we also found that the top 2-3 u.c. of the STO have a non-zero apparent oxygen octahedra tilt, especially in the middle layer, of up to ~3o, and this finding correlates with the previous reported magnetic moment found at the interfacial Ti cations. [1]

Here, we directly evidenced the strong relation between the oxygen octahedral tilt and the magnetism. We found a greatly suppressed tilting in LSMO due to the interfacial coupling of adjacent oxygen octahedral of cubic STO, which gives rise to dramatic deterioration of the magnetic and transport properties when the LSMO layer is thinner than 3 u.c.. Therefore, for good TMR properties of LSMO-STO heterostructures, a critical thickness of LSMO of at least 7 u.c. (3 u.c. away from both interfaces) is required for preserving ferromagnetism, and a critical thickness of STO of at least 5 u.c. (2 u.c. away from both interfaces) for a good insulating barrier.

[1] F. Y. Bruno, et.al. Physical Review Letters 106 (14), 147205 (2011).

[2] R. Peng, et.al. Applied Physics Letters 104 (8), 081606 (2014).

[3] X. Zhai, et.al.  Nature Communications 5, 4283 (2014).

[4] Q. He, et.al. ACS Nano 9, 8412 (2015)


Xiaoyan LI (Orsay), Ionela VREJOIU, Michael ZIESE, Peter VAN AKEN
11:30 - 11:45 #6798 - MS06-OP294 A study of polymorph dynamics in mixed-phase BiFeO3 thin films via AFM and in-situ TEM applications of external stimuli.
MS06-OP294 A study of polymorph dynamics in mixed-phase BiFeO3 thin films via AFM and in-situ TEM applications of external stimuli.

Epitaxially strained BiFeO3 (BFO) thin films have seen an upsurge of interest over the past decade with the revelation of fascinating characteristics such as giant ferroelectric polarisation, exceptional piezoelectric and magnetoelectric responses to name a few.[1] The growth of BFO on substrates providing a large in-plane compressive strain which facilitates structural alterations of the material to that of a tetragonal-like phase (T-phase) and distorted rhombohedral-like phase (R-phase) has opened the door to a plethora of opportunities in terms of controlling nanoscale interfaces and expanding our understanding of solid state physics. In a recent review by Nagarajan et al. (2016),[2] it was advised that there are still a number of exciting possibilities as well as pending questions which need to be addressed before the functionality of mixed-phase BFO thin films can be driven to the next level.

Using both aberration-corrected TEM and STEM we have performed a high resolution study of the lattice parameters which characterise the ‘R’ and ‘T’ phase (Figure 1) and mapped the strain evolution (via geometrical phase analysis (GPA)) between polymorphs using the LaAlO3 substrate as reference. Having identified the metastable ‘T’ polymorph and the extent to which the thin film (and FIB-prepared lamella) thickness can influence the ratio of ‘R’ to ‘T’ polymorphs, we demonstrate the thermal energy required to expand the dimensions of the highly strained ‘T’ polymorph through in-situ heat cycling experiments (Figure 2), and explain the complexity involved in such a transition.

The relative ease through which transitions from one phase to another can be achieved varies depending on the application of stimuli selected. In this study we use a variation of techniques to explore the physical phenomena behind the functionality of mixed-phase BFO. We highlight the benefits of reversibly reorganising phases via the application of external stimuli with an AFM probe tip. Through precise SEM and FIB techniques we have identified the pre-written AFM areas and milled cross-sectional lamellae across these areas for post-AFM analysis using STEM. With this unique study we detect and compare structural differences between the as-grown polymorphs in a native lamella and polymorphs written through external stimuli via an AFM tip. We show differences in lattice parameters and strain evolution in the newly written polymorphs via nano-beam electron diffraction using a 2nm sized electron probe; this precision has allowed us to explicitly map the strain across a large area of these polymorphs. With the addition of EELS focusing on the Fe-L2,3 and O-K edges we show changes in ELNES features which suggest octahedral distortion variations between polymorphs.

By combining AFM and state-of-the-art STEM techniques in this distinctive way we provide an insight into the link between exciting interfacial behaviour seen via AFM at the polymorph boundaries on the microscopic scale, and structural polymorph changes seen via STEM on the atomic scale.

 

References

[1] R. Ramesh and N. A. Spaldin, Nat. Mater. 6, 21-29 (2007)

[2] D. Sando, B. Xu, L. Bellaiche and V. Nagarajan, Appl. Phys. Rev. 3, 011106 (2016)


Kristina HOLSGROVE (Belfast, United Kingdom), Martial DUCHAMP, Niall BROWNE, David EDWARDS, Nicolas BERNIER, Dipanjan MAZUMDAR, Marty GREGG, Amit KUMAR, Miryam ARREDONDO
11:45 - 12:00 #6826 - MS06-OP295 High resolution STEM analysis of temperature stable relaxors.
MS06-OP295 High resolution STEM analysis of temperature stable relaxors.

There is a need for dielectric materials with high relative permittivity (εr) values that can operate at high temperatures.  Such materials have uses in new automotive, aerospace and energy technologies where there are demands for capacitors to operate in increasingly demanding high temperature environments. One particular ceramic system that shows promise is (1-x)Ba0.8Ca0.2TiO3-(x)BiMg0.5Ti0.5O3 (BCT-BMT) [1].

Typical relaxor materials display a broad εr peak when plotted against temperature [2]. Their behaviour may be explained by the presence of nano-domains [3, 4], or polar nano-regions (PNRs), which act to broaden the dielectric peak through a distribution of relaxation times.  However, a special class of relaxors display εr plots with flat temperature responses up to 500 ºC.  These are termed temperature-stable relaxors and BCT-BMT is such a material.  This behaviour cannot be explained by current understanding of relaxor PNRs, and so further investigation of structural and chemical differences in the nanostructure is required.  One technique ideally suited to probing such features is atomic resolution scanning transmission electron microscopy (STEM).

Initial studies of the material with composition (Ba0.4 Ca0.1 Bi0.5) (Mg0.25 Ti0.75)O3, which displays typical temperature stable relaxor behaviour, have been carried out using aberration corrected STEM using a Nion UltraSTEM 100.  STEM high angle annular dark-field (HAADF) imaging at the atomic level suggests uniform crystallinity; however measurements of displacements of B-site atomic columns within the projected lattice on the nanoscale are detectable.  These localised, coherent B-site displacements (in the form of aligned nanodomains) may respond to changes in temperature in a different way to normal relaxor materials and their detection could go some way to explain the temperature stable behaviour.  Atomically resolved electron energy loss spectroscopy (EELS) spectrum imaging (SI) was used to identify potential chemical inhomogeneity which might also contribute to a distinctive polar nanostructure (Figure 1) and help explain the dielectric behaviour. However there are challenges associated with this type of EELS analysis: the Ca L2,3-edge was obscured by the tail of the C K-edge, the Mg K-edge is weak and the Bi M4,5-edge sits at a high energy loss.  Nevertheless, preliminary studies suggest significant column-to-column variations in HAADF intensity for both A and B sites in BCT-BMT for the very thinnest regions of the STEM specimen, suggesting significant short-range variations in composition. 

Present studies are concentrating on detecting any chemical inhomogeneities in the sample using STEM energy dispersive X-ray (EDX) mapping, which will complement EELS by being able to map the Ca, Mg and Bi elemental signals without overlap.  The new 300 kV FEI Titan3 Themis G2 STEM installed at Leeds University with its FEI SuperX EDX system is capable of producing elemental maps with sufficient resolution and sensitivity, as demonstrated in EDX maps shown in Figure 2.  Here, EDX mapping has been carried out on a different sample, in an area containing an interface between SrTiO3 and (0.7)BiFeO3 – (0.3)PbTiO3.  The positions of the columns of Bi are clearly visible, and it is anticipated that such capability will mean that more information can be gained about any possible chemical segregation in BCT-BMT.  

(1)  A Zeb and S J Milne. J. Am. Ceram. Soc., 96 [9] 2887-2892. (2013)

(2)  M Groting, S Hayn, K Albe J Solid State Chem 184, 2041-46. (2011)

(3)  C. A. Randall, D J Barber, R W Whatmore and P Groves.  J. Mater. Sci. 21,  4456. (1986)

(4)  A Feteira, D C Sinclair and J Kreisel. J. Am. Ceram. Soc. 93 (12) 4174-4181. (2010)


Michael WARD (Leeds, United Kingdom), Steven MILNE, Aurang ZEB, Faye ESAT, Nicole HONDOW, Andy BROWN, Rik BRYDSON, Sophia ANDERSSON, Ian MACLAREN, David HERNANDEZ MALDONADO
12:00 - 12:30 #7856 - MS06-S82 Strain-driven oxygen deficiency in multiferroic SrMnO3 thin films.
Strain-driven oxygen deficiency in multiferroic SrMnO3 thin films.

In the last decade, multiferroic materials exhibiting simultaneous magnetic and ferroelectric order with strong magnetoelectric coupling above room temperature have attracted great interest. This is motivated by the expectation of integrating them into low-power spintronic nanodevices, where the magnetic order is controlled by low energy consuming electric fields instead of magnetic fields. Manganese-based perovskite oxides are particularly promising for this purpose. Recently, it was suggested that strain-driven multiferroicity associated with spin-phonon coupling should arise in strained SrMnO3 (SMO): under epitaxial strain a polar instability in the ferromagnetic phase leads to a substantial energy lowering, which stabilizes the ferromagnetic-ferroelectric multiferroic phase over the bulk antiferromagnetic-paraelectric phase [1]. Thus, the spontaneous polarization is driven by the off-centering of the magnetic Mn4+ cations from the MnO6 octahedra and increases by expansion of the lattice.

However, the SMO structure tends to incorporate oxygen vacancies, which makes it very difficult to synthesize fully stoichiometric SMO samples. Moreover, for SMO films, a small biaxial tensile strain of 2% is predicted to increase the oxygen vacancy concentration by one order of magnitude at room temperature [2]. Understanding the role of the oxygen non-stoichiometry in this material is of fundamental importance for the development of multiferroic SMO thin films as perfectly stoichiometric highly resistive samples are required.

Here, we focus on the structural and electronic properties of several SMO thin films grown on different substrates, namely LSAO, LAO, LSAT, STO and DSO, by using aberration-corrected high-angle annular dark-field scanning transmission electron microscopy (HAADF-STEM) and electron energy loss spectroscopy (EELS). The structural parameters of the SMO films are obtained by geometrical phase analysis of HAADF-STEM images and are plotted as a function of nominal strain in Fig. 1. EELS data were acquired for all the samples: the obtained oxygen K-edge spectra show pronounced peak-height changes and energy shifts as a function strain (Fig. 2). The experimental results are interpreted with the aid of the all-electron density functional theory (DFT) code WIEN2k (see Fig. 3). Thus, the effect of oxygen vacancies on the O K and Mn L2,3 electron energy-loss near-edge structures (ELNES) is theoretically investigated [3].

[1] J. H. Lee and K. M. Rabe, Phys. Rev. Lett. 104, 207204 (2010).

[2] C. Becher et al. Nature Nanotech. 10, 661 (2015).

[3] This research was supported by the Swiss National Science Foundation under the project number 200021_147105. We thank J. Guo and P. Yu for providing the samples.


Marta D. ROSSELL (Dübendorf, Switzerland), Piyush AGRAWAL, Cécile HÉBERT, Daniele PASSERONE, Rolf ERNI
Invited
Amphithéâtre

"Wednesday 31 August"

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MS5-I
10:15 - 12:30

MS5: Energy-related materials
SLOT I - Different aspects

Chairpersons: Wolfgang JÄGER (Chairperson, Kiel, Germany), Joachim MAYER (Chairperson, Aachen, Germany), Philippe MOREAU (Chairperson, IMN, Nantes, France)
10:15 - 10:45 #4442 - MS05-S76 Correlative atom probe tomography and electron microscopy on energy materials.
Correlative atom probe tomography and electron microscopy on energy materials.

We present recent progress in correlative methods for the joint analysis of samples by Atom Probe Tomography (LEAP 3000, LEAP 5000) and Electron Microscopy (Cs corrected Titan Themis). Measurements are conducted on the same Atom Probe sample tips and in some cases atomic resolution is reached.

Examples from functional and structural energy-related materials are presented including segregation effects in multicrystalline silicon solar cells and their relation to cell efficiency (Fig. 1), superalloys for advanced turbines and high strength steels (Fig. 2).


Andreas STOFFERS, Christian LIEBSCHER, Pyuck-Pa CHOI, Michael HERBIG, Christina SCHEU, Gerhard DEHM, Ivan POVSTUGAR, Dierk RAABE (Duesseldorf, Germany)
Invited
10:45 - 11:15 #8697 - MS05-S77 Combining advanced TEM techniques for full characterization of extended defects in creep-deformed single crystal superalloys.
Combining advanced TEM techniques for full characterization of extended defects in creep-deformed single crystal superalloys.

Single crystal superalloys are used for turbine blades in the hottest parts of gas engines, where they have to withstand high stresses at temperatures exceeding 1000°C. This is only possible because of the well-known γ/γ‘-microstructure of these alloys, forming the basis for excellent creep properties [1]. One of the research objectives is to gain a microscopic understanding of the elementary deformation mechanisms and defect processes that govern high-temperature creep and to use this knowledge for further improvement of single crystal superalloys. Beside Ni-base superalloys which are well established in applications new Co-base superalloys have attracted a lot of research interest since the discovery of stable γ/γ‘-microstructure in these alloys in 2006 [2]. Research on Co-base superalloys is still in its infancy, meaning that there is strong need for fundamental studies on elementary deformation mechanisms and defect processes.

In this contribution we give an overview of our recent research on extended defects that form upon high-temperature creep in Ni- and Co-base superalloys. We demonstrate that the combination of advanced transmission electron microscopy (TEM) techniques, employing dedicated diffraction, high-resolution and analytical methods, is generally required for full characterization of such extended defects and for obtaining a complete picture of their role in elementary creep processes.   

Figure 1 illustrates an example of full characterization of superdislocations in a Ni-base superalloy. First, large-angle convergent beam electron diffraction (LACBED) is employed for reliable determination of the Burgers vector [3], overcoming the well-known problems of conventional Burgers vector analysis of such dislocations. Secondly, using a new FIB cross-sectioning technique [4], the core structure of the same dislocation is studied by high-resolution scanning TEM (HRSTEM). This approach enables scale-bridging characterization of complex superdislocations on the micrometer and atomic scale.

Figures 2 and 3 summarize advanced TEM studies on extended faults that form upon creep of Ni-containing Co-base (CoNi) superalloys [5]. Inside of γ‘ precipitates a characteristic defect configuration is observed in which  superintrinsic stacking fault (SISF) loops are fully embedded in antiphase boundaries (APB). LACBED is used to determine the full Burgers vector (including sign and magnitude!) of the partial dislocation loop [5]. Pronounced segregation of alloying elements at SISF and APB is revealed by HRSTEM and energy-dispersive X-ray spectroscopy (EDXS). Based on these and other results, an elementary creep mechanism is proposed which is characterized by ½<112> slip involving a SISF→APB transformation [5]. Atomic diffusion at creep temperature appears to be a rate limiting step by gradually changing the fault energies which control the kinetics of the transformation.

[1] R.C. Reed, The Superalloys: Fundamentals and Applications, Cambridge University Press, Cambridge, 2008.

[2] J. Sato, T. Omori, K. Oikawa, I. Ohnuma, R. Kainuma and K. Ishida, Cobalt-base high-temperature alloys, Science (2006), 312, pp. 90-91.

[3] J. Müller, G. Eggeler, and E. Spiecker, On the identification of superdislocations in the γ′-phase of single-crystal Ni-base superalloys – An application of the LACBED method to complex microstructures,  Acta Materialia (2016), 87, pp. 34-44.

[4] J. Müller and E. Spiecker, Correlative microscale and atomic scale characterization of individual defects and interfaces in Ni-base superalloys, Proceedings of the Microscopy Conference MC 2015, 6-11 September 2015, Göttingen, Germany, MS4.076, pp. 146-147.

[5] Y.M. Eggeler, J. Müller, M.S. Titus, A. Suzuki, T.M. Pollock, and E. Spiecker, Planar defect formation in the γ′ phase during high temperature creep in single crystal CoNi-base superalloys, Acta Materialia (2016), 113, pp. 335-349.

Financial support by the German Research Foundation (DFG) through the SFB-TR 103 “Single Crystal Superalloys” and the Cluster of Excellence EXC 315 “Engineering of Advanced Materials” is gratefully acknowledged.


Erdmann SPIECKER (Erlangen, Germany), Julian MÜLLER, Yolita M. EGGELER, Malte LENZ
Invited
11:15 - 11:30 #7067 - MS05-OP277 TEM and STEM investigations of Sr(Ti,Nb)O3-δ thermoelectric with the addition of CaO and SrO.
TEM and STEM investigations of Sr(Ti,Nb)O3-δ thermoelectric with the addition of CaO and SrO.

It is known that thermoelectric properties, i.e. figure of merit ZT of oxide-based polycrystalline thermoelectric materials can be improved by introducing planar faults into the microstructure of these materials. It is assumed that in-grown planar faults will reduce thermal conductivity without reducing electrical properties which would consequently increase the ZT value. In order to successfully tailor thermoelectric properties of chosen thermoelectric materials, it is prerequisite to know the structure and chemical composition of introduced planar faults. This is why we used HR TEM and HAADF STEM imaging with EDXS in order to study structure and chemical composition of the Ruddlesden-Popper-type (RP) planar faults1,2 in Sr(Ti,Nb)O3-d (STNO) thermoelectric material with the addition of SrO and/or CaO. All results were obtained in a Jeol ARM-200F with a CFEG and Cs probe corrector. HAADF imaging was performed at angles from 70 to 175 mrad (ADF from 42 to 168 mrad). EDX spectra were acquired using JEOL Centurio Dry SD100GV SDD Detector. TEM bright‑field images of pure STNO showed that the STNO solid solution grains contained no planar faults of any kind. Furthermore, the interfaces between the grains were clean with no observable interface phase. However, when SrO and/or CaO were added to the STNO, various nanostructured features were observed. In SrO‑doped STNO, one can observe three distinctly different regions, i.e. the STNO solid solution, the regions with ordered SrO faults and the region with a network of random SrO planar faults (Figure 1). In the ordered regions one SrO layer is always followed by two perovskite STNO blocks, which corresponds to the Sr3(Ti1‑xNbx)2O7 RP‑type phase in which Nb and Ti occupy the same crystallographic site. While the measured HAADF intensities across Sr atomic columns at the RP fault do not scatter significantly, the mixed (Ti1-xNbx)O6 atom columns on the other hand exhibit significant differences in measured intensities thus indicating variation in Nb and Ti content within a single mixed atom column (Figure 2). Semi-quantitative HAADF STEM of the perovskite matrix, i.e. the comparison of measured integrated intensities of the atom columns with the calculated intensities showed that that the Nb content on the Ti sites within the perovskite structure varied from app. X=0.05 to X=0.35 (from Sr(Ti0.95Nb0.05)O3-d  to Sr(Ti0.65Nb0.35)O3-d). When RP‑type planar faults are isolated they run parallel to the {001} low-index zone axes of the perovskite structure. A similar structural phenomenon was observed in STNO with excess of CaO. Again, ordered and/or random 3D networks of RP‑type planar faults were observed in the STNO grains (Figure 3). In very thin regions of CaO-doped STNO specimen many orthogonal loops of RP faults were observed that were not detected in SrO doped STNO (Figure 4). The EDX analysis from a single fault and from the matrix showed higher concentration of Ca at the fault. This is in agreement with previously reported investigations3 since smaller Ca ions are easier incorporated at the RP fault than in the perovskite matrix. The TEM and STEM investigations thus confirmed that the addition of SrO and/or CaO to the STNO perovskite solid solution is structurally compensated via the formation of RP‑type planar faults within the STNO grains. Finally, thermoelectric measurements confirmed that the existence of RP-type faults in the perovskite STNO matrix reduced the thermal conductivity of this oxide thermoelectric material.

REFERENCES:

[1]   S.N. Ruddlesden, P. Popper, Acta Cryst., 11, 54-55, 1958

[2]   S. Sturm, M. Shiojiri, M. Ceh, J. Mater. Res., 24(8), 2596-2604, 2009

[3]   S. Sturm, A. Recnik, M. Kawasaki, T. Yamazaki, K. Watanabe, M. Shiojiri, M. Ceh, JEOLNews, 37E 22, 2002

acknowledgements:

The authors acknowledge financial support from the Scientific and Technological Research Council of Turkey (TÜBITAK) under Fellows Program and from EU under Seventh Framework Programme under grant agreement n°312483 (ESTEEM2).


Miran ČEH (Ljubjana, Slovenia), Marja JERIČ, Sašo ŠTURM, Cleva OW-YANG, Mehmet ALI GÜLGÜN
11:30 - 11:45 #6640 - MS05-OP273 Atomic structure and electronic configurations of 2D thermoelectric cobaltates.
Atomic structure and electronic configurations of 2D thermoelectric cobaltates.

Among the numerous different oxide systems, the cobaltites present fascinating and complex physical properties directly correlated with their electronic structure. A strong interplay exists in these Co-based systems between (i) valence and spin states and (ii) low dimensionality and structural anisotropy, all of these yielding the emergence of unexpected magnetic and thermoelectric (TE) functionalities as illustrated in NaxCoO2 [1]. The misfit-layered cobalt oxides built from similar cobalt layers have triggered intensive works regarding their remarkable TE properties at high temperatures. A real driving force of this misfit family is the CoO2 2D hexagonal layers turning out to be at the origin of its metallicity combined with a large thermopower, and more largely of interesting magnetic and electronic phenomena [2].

Another cobalt oxide, Bi4Sr12Co8O28-δ, derived from the 2201-type cuprates reveal an original tubular structure. These cobaltates present a peculiar 2D structure composed of two defined sub-lattices interconnected through oxygen-deficient CoOxpillars. This complex network has the ability to accommodate a certain structural and chemical flexibility by tuning locally its oxygen stoichiometry and therefore modulates its concentration of charge carriers. Large oxygen stoichiometry variations are achieved in these Co-based systems after post-annealed synthesis inducing dramatic changes in their physical properties, e.g. the emergence of two magnetic transitions at ≈ 50 K and 450 K. As in misfit cobaltites, the Co-tubular family reveals peculiar transport properties and magnetic transitions while their local electronic configurations remain unresolved to date. In these bidimensional cobaltites, one of the pivotal questions is the key role played by each type of Co sites.

The recent advances in electron spectromicroscopy have considerably improved both spatial and spectral resolutions toward acquiring 2D elemental maps at sub-Angström resolution over large unit cells and more recently mapping mixed-valence state modulations down to the level of the atomic columns. Here we shed light on the [Bi2Sr2CoO6]n[Sr8Co6O16-δ] n=2 member by resolving its atomic structure using a Cs-corrected scanning transmission electron microscope (STEM), the NION UltraSTEM200, coupled with electron energy-loss spectroscopy (EELS). Relying on high-energy resolution, we map locally the Co mixed-valence state modulations and further probe the effect of electronic charge transfer on individual Co atomic columns by tracking the subtle evolution of the Co-L2,3 and O-K near-edge fine-structures which are highly sensitive to the mixed valence-states and the hybridization geometries (see Fig.).

[1] I. Terasaki, Y. and K. Uchinokura, Phys. Rev. B 56, R12685 (1997)

[2] S. H.bert, W. Kobayashi, H. Muguerra, Y. Br.ard, N. Raghavendra, F. Gascoin, E. Guilmeau, A. Maignan. Phys. Stat. Sol. A 210, 69-81 (2013)

[3] D. Pelloquin, A. C. Masset, A. Maignan, M. Hervieu, C. Michel, B. Raveau, J. Solid State Chem.148, 108-118 (1999)


Laura BOCHER (LPS - STEM, Paris), Alexandre GLOTER, Odile STÉPHAN, Sylvie HÉBERT, Denis PELLOQUIN
11:45 - 12:00 #5768 - MS05-OP265 In-situ reduction of platinum alloys using environmental (S)TEM.
In-situ reduction of platinum alloys using environmental (S)TEM.

Platinum-cobalt amongst other platinum alloys has desirable properties for use in fuel cells, having higher activities and stability than current commercial catalysts which only use platinum. Research into structures of platinum-cobalt alloy nanoparticles has greatly benefited from electron microscopy, particularly Z contrast HAADF-STEM imaging which is able to resolve the nanoparticle and surface structure with atomic resolution [1].

Most of the electron microscopy has focused on the characterisation of as prepared particles which have underwent further treatment outside the microscope [1, 2]. These annealing experiments produce ordered structures on the surface and fully ordered cubic (Pt3Co) or tetragonal phase (PtCo) alloys depending on the composition and annealing temperatures and times. The studies have been aided by in-situ (S)TEM studies which focus on the segregation of platinum and cobalt is observed inside the microscope at atomic resolution [3, 4]. Although there are many studies, often accompanied by EELS and EDX there appear to be few studies on the initial interaction between platinum and other metals which may be more representative of the activation of a commercial catalyst which is produced in bulk.

Inspired by annealing experiments performed on thin films for magnetic applications [5], we took a different approach by using aberration corrected environmental STEM and a MEMS heating holder to investigate how platinum, cobalt and cobalt oxides interact upon initial annealing.  We sputtered thin films of platinum and cobalt to make model systems similar to those used in magnetic thin films. Figure 1 shows a low and high magnification image of the as deposited film. The high magnification image shows mostly platinum crystallography but several amorphous regions and CoO crystals in the background. By annealing in-situ, in hydrogen gas (to remove cobalt oxide, typically used as a cobalt precursor) we were able to form new structures. Figure 2 shows the film shortly after being at 450 °C and 700 °C. In both cases alloyed regions were generally found but only completely ordered particles were observed at 700 °C. The 700 °C annealing temperature produces a good distribution of nanoparticles which can be further explored. Similar experiments are to be carried out on other alloys including platinum-copper and platinum-nickel. Results from these experiments have importance to the development of fuel cells and other industrial processes. The behaviour of platinum-cobalt thin films under annealing may also find use in magnetic film research.

Acknowledgements

We acknowledge the EPSRC for funding of this project (EP/J018058/1 critical mass grant) and thank Ian Wright for assistance.


References

1. Chen, S., et al., Origin of Oxygen Reduction Reaction Activity on "Pt3Co" Nanoparticles: Atomically Resolved Chemical Compositions and Structures. Journal of Physical Chemistry C, 2009. 113(3): p. 1109-1125.

2. Wang, D.L., et al., Structurally ordered intermetallic platinum-cobalt core-shell nanoparticles with enhanced activity and stability as oxygen reduction electrocatalysts. Nature Materials, 2013. 12(1): p. 81-87.

3. Xin, H.L.L., et al., Revealing the Atomic Restructuring of Pt-Co Nanoparticles. Nano Letters, 2014. 14(6): p. 3203-3207.

4. Chi, M., et al., Surface faceting and elemental diffusion behaviour at atomic scale for alloy nanoparticles during in situ annealing. Nat Commun, 2015. 6.

5. Sato, K., K. Yanajima, and T.J. Konno, Structure and compositional evolution in epitaxial Co/Pt core-shell nanoparticles on annealing. Thin Solid Films, 2012. 520(9): p. 3544-3552.


Michael WARD (York, United Kingdom), Ed BOYES, Pratibha GAI
12:00 - 12:15 #5266 - MS05-OP262 Investigation of the deformation mechanisms and defects in high-Mn austenitic steel.
Investigation of the deformation mechanisms and defects in high-Mn austenitic steel.

A new class of austenitic steels stabilized with high Mn contents (instead of Ni) exhibits exceptional mechanical properties, such as large energy absorption and high work-hardening rate, owing to secondary deformation mechanisms such as mechanical twinning-induced plasticity (TWIP) and martensitic transformation-induced plasticity (TRIP) favored for low stacking-fault energy (SFE) [1]. The interaction of dislocations with twin boundaries and martensite interfaces during mechanical deformation enhances the work hardening, i.e., a dynamic Hall-Petch effect, with total elongations exceeding 70% and ultimate tensile strengths in the GPa regime.

The influence of the strain rate, temperature, and changes in SFE on the deformation mechanisms in high-Mn austenitic steels has been investigated using electron backscattered diffraction (EBSD), electron-channeling contrast imaging (ECCI), conventional bright-field/dark-field imaging (BF/DF), and aberration-corrected high-resolution scanning/transmission electron microscopy (HRTEM/HRSTEM).  The TWIP/TRIP secondary deformation mechanisms are related to the low SFE exhibited in these materials.  Experimentally measured SFE from weak-beam-dark-field (WBDF) imaging provides the basis to understand how changes in SFE influence mechanical twinning versus transformation induced martensite [2-3].  However, adiabatic heating during deformation at high strain rates (20 -10,000 s-1) increases the SFE.  Quantifying the twin or martensite density by EBSD/ECCI and BF-DF images allows for comparison of the secondary deformation at different SFE, strain rates, and total elongation, but to study the details of the deformation mechanisms requires imaging at atomic resolution using aberration-corrected electron microscopy. 

Figure 1(a) shows the EBSD/ECCI experimental procedure.  EBSD identifies grains with a [110] orientation that are subsequently imaged using backscattered electrons where the incident beam strongly channels except for areas with twinning and martensite plates.  Although the EBSD/ECCI method provides for a statistical number of measurements, the DF imaging method shown in figure 1 (b) has the advantages of improved resolution and the ability to differentiate between the hexagonal ε-martensite and twins. The histograms in figures 1 (c-d) summarize the spacing between the planar defects and their thickness from a Fe-25Mn3Al3Si alloy deformed at a strain rate of 20 s-1 to a total strain of 20% using these two experimental methods.  Figure 3 is a HRTEM image produced with an image corrected FEI-Titan from a Fe-25Mn3Al3Si alloy deformed at a strain rate of 2x103 s-1 to a total strain of 18%. The image shows an example of an individual dislocation trapped at the planar defect interface as well as a local region of martenite (bottom left) together with the mechanical twins.  The high-angle dark field (HAADF) HRSTEM image in figure 3 from a Fe-16Mn14Cr0.3N0.3C alloy deformed to a total strain of 21% at a strain rate of 10-4 s-1 was acquired using the ER-C PICO operating at 300 kV.  Similar to the high strain rate material, the quasi-static deformed microstructure exhibits multiple mechanical twins with evidence of local hexagonal stacking (upper right). Advantages of the HRSTEM method compared to HRTEM images are more straight forward image interpretation from the HAADF amplitude contrast, the ability to image thicker samples, and the reduced sensitivity to local variation in crystallographic orientation.

 

[1] O Grassel, L Kruger, G Frommeyer, and LW Meyer,  Int. J. Plasticity,16(2000) p.1391

[2] D T Pierce, JA Jiménez, J Bentley, D Raabe, C Oskay and JE Wittig, Acta Mater 68(2014)238-53

[3] D T Pierce, J A Jiménez, J Bentley, D Raabe and J E Wittig, Acta Mater 100(2015)178-90

Acknowledgement - Financial support from the NSF DMR 0805295 and the DFG SFB 761 “Steel –ab initio” and research at the Ernst Ruska-Centre are gratefully acknowledged.


James WITTIG (Nashville, USA), Jake BENZING, Maryam BEIGMOHAMADI, Marta LIPINSKA, Joachim MAYER
12:15 - 12:30 #6390 - MS05-OP271 High resolution STEM and EELS investigation of N-doped carbon allotropes decorated with noble metal atom catalysts.
High resolution STEM and EELS investigation of N-doped carbon allotropes decorated with noble metal atom catalysts.

Graphene’s unique properties make this material an ideal catalyst support for use in the proton exchange membrane fuel cell (PEMFC). Graphene offers increased electrical conductivity and a larger surface area for catalyst deposition compared to other catalyst support material, such as carbon black.[1,2]. Utilizing graphene as the electrode support also results in increased chemical stability due to the spbonding; however, this precludes the availability of dangling bonds for chemisorption, thus leading to a poor Pt distribution and the formation of large nanoparticles (NPs). Functionalization can be used to introduce nucleation sites into the graphene lattice, where N-dopants have been shown to increase the Pt-C binding energy.[3] The atomic layer deposition (ALD) technique creates ultra-small NPs (<1 nm) which, when combined with the enhanced catalyst binding energy from the N-doped graphene support can produce stable Pt clusters/atoms, resulting in increased Pt utilization while subsequently reducing the cost.[4] 

To fully understand and design a more efficient PEMFC the material must be characterized at the atomic level. This can be accomplished by the use of aberration-corrected transmission electron microscopy (TEM). High resolution TEM (HRTEM) can be utilized to observe the structure of the graphene lattice, while high-angle annular dark-field (HAADF) scanning transmission electron microscopy (STEM) can be used to examine the Pt clusters’ size and distribution. Furthermore, electron energy loss spectroscopy (EELS) can be utilized to examine local chemical composition and bonding of the probed atoms from nanometer scaled areas in order to reveal the coordination of the N-dopant species in the graphene lattice.[4] Here we used a FEI Titan 80-300 Cubed TEM equipped with aberration correctors of the probe and imaging forming lens, and a monochromator for optimal imaging at a low accelerating voltage.

Low-energy condition HRTEM (figure 1) and STEM imaging were used to investigate thermally-exfoliated graphene (figure 2). From these observations, we deduced that the graphene lattice maintained its short range order; however, the long range order was lost due to the presence of steps, folds, defects, and incomplete exfoliation.[4] The mass-thickness dependence in HAADF imaging confirmed the presence of numerous steps and ledges in the N-doped graphene nanosheets. More importantly the Z-contrast in the HAADF images revealed that Pt was present as stable single atoms and clusters on the N-doped graphene and that Pt NPs were not detected.[4] Lastly, using EELS and the N-K edge fine structures, we probed the distribution of N-dopants within the nanosheets (figure 3). Significant variations in the local concentration of N-dopants were observed among the graphene sheets, in which an inhomogeneous distribution was discovered. Such effects have not been observed in previous broad beam techniques.[4] To futher investigate the effect of N-doping, mutliwalled N-doped CNTs (N-CNTs) were produced and ALD was utilized to deposit Pd. Initial investigations showed the stabilization of single Pd atoms with N-doping; however, small NPs were also formed (figure 4). It was demonstrated with EELS that many of the N-CNTs were filled with N2 gas. Using controlled evacuation of the multiwalled CNTs induced by the electron beam, we were able to reveal the intrinsic N-type doping within the CNT walls.

References

[1]Novoselov,K.S, Geim,A.K.  Science, 306,(2004),666.

[2]Lee,C. et.al. Science, 321,(2008),385.

[3]Holme,T. et.al. Phys.Chem.Chem.Phys, 12,(2010),9461.

[4]Stambula,S et.al. J.Phys.Chem.C, 118,(2014),3890.

Acknowledgements

This work is supported by NSERC via CaRPE-FC Network grant and a strategic grant to Western University and McMaster University. S. Stambula is grateful to NSERC for a Postgraduate Scholarship. The electron microscopy presented here was carried out at the Canadian Centre for Electron Microscopy, a National Facility supported by the Canada Foundation for Innovation under the MSI program, NSERC, and McMaster University.


Samantha STAMBULA (Hamilton, Canada), Matthieu BUGNET, Niancai CHENG, Andrew LUSHINGTON, Xueliang SUN, Gianluigi BOTTON
Salle Bellecour 1,2,3

"Wednesday 31 August"

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MS2-III
10:15 - 12:30

MS2: 1D and 2D materials
SLOT III

Chairpersons: Raul ARENAL (Chairperson, Zaragoza, Spain), Ursel BANGERT (Chairperson, Limerick, Ireland)
10:15 - 10:45 #8632 - MS02-S71 Extreme Nanowires: The Smallest Crystals in the Smallest Nanotubes.
Extreme Nanowires: The Smallest Crystals in the Smallest Nanotubes.

A logical extension to fabrication of monolayer 2D materials such as graphene is creation of

'Extreme Nanowires' (i.e. Fig. 1), down to a single atom column in width.[1,2] In this limit, crystals

have fundamentally different physical characteristics and properties.[3-5] We and others have created

atomically regulated nanowires by confining them within the smallest diameter carbon nanotubes

(i.e. either single walled carbon nanotubes (SWNTs) or double walled carbon nanotubes (DWNTs)),

and are investigating their structural and electronic properties. These materials also provide an

ultimate benchmark for testing the most sensitive characterisation methodologies which, when

corroborated with suitable theory, will provide new data on physics at the most fundamental length

scale accessible to nanomaterials fabrication. The most powerful investigative tools for structural

investigation are aberraton-corrected Transmission Electron Microscopy (ac-TEM) and Scanning

Transmission Electron Microscopy (ac-STEM) and, here, we describe the application of these

methods to a variety of Extreme Nanowire systems.

One of the most crucial aspects of the role of electron microscopy in our investigation is the 2D

and 3D elucidation of the structure of quasi- or true 1D nanowires formed in SWNTs as these form

the primary source of information for density functional theory (DFT) and other ab initio theoretical

approaches to both structure and properties elucidation. When combined with real physical

measurements, this combined approach becomes even more powerful as we can start to piece

together how the fundamental physics of a crystalline nanowire changes once we constrain its width

down to one or two atoms in cross section. For example we recently record Raman Spectra from

2x2 atom thick HgTe nanowires embedded within 1.2-1.4 nm SWNTs[4] and found that we are able to

model the Raman-measured lattice phonons of this system based on a simple structural model

previously determined from two pairs of Exit Wave Reconstruction images which we also used to

make DFT predictions about the altered electronic structure of this system which is predicted to

change from a -0.3 eV semi-metal to a ~1.2 eV band gap semiconductor.[3] Following on from the

exciting recent work of Senga et al.[2] who imaged the first true 1D crystals of CsI in DWNTs we are

now modeling single atomic chain coils of tellurium formed within narrow SWNTs (Fig. 2).[6]

References

[1] J. Sloan et al Chem Commun (2002) 1319

[2] R. Senga et al Nature Mater 13 (2014) 1050

[3] R. Carter et al Phys Rev Lett 96 (2006) 21550

[4] J. H. Spencer et al ACS Nano 8 (2014) 9044

[5] C. Giusca et al Nano Lett 13 (2013) 2040

[6] To be published


Jeremy SLOAN (Coventry, United Kingdom), Reza KASHTIBAN, Sam MARKS, Richard BEANLAND, Ana SANCHEZ, Sam BROWN, Andrij VASYLENKO, Peter BROMMER, Krzysztof MORAWIEC, Slawomir KRET, Paulo MEDEIROS, James WYNN, Joe SPENCER, David SMITH, Quentin RAMASSE, Zheng LIU, Kazu SUENAGA, Andrew MORRIS, David QUIGLEY, Eric FAULQUES
Invited
10:45 - 11:00 #5976 - MS02-OP222 Defects in as-grown vs. annealed rutile titania nanowires and their effect on properties.
Defects in as-grown vs. annealed rutile titania nanowires and their effect on properties.

Semiconducting metal oxides play a key role in electrochemical and photo physical applications like photo catalysis and as electrode material in solar cells and Li-ion batteries. Among these metal oxides, hydrothermally grown rutile TiO2 nanowire arrays are promising as the 1 D structure possesses a large surface area and a directed electron path towards the substrate. However, the efficiency of these devices is also influenced by the defects inside the nanowires (dislocations, stacking faults, titanium interstitials and oxygen vacancies). A previous study showed that as-grown nanowires have a high density of lattice defects.[1] However, these defects can be removed by an additional annealing step. Latest findings demonstrate that hybrid solar cells where those annealed nanowires are incorporated have significantly higher power-conversion efficiency.[2] However, the removal of the defects is not fully understood so far.

In our present work, transmission electron microscopy (TEM) was used to study the changes within the nanowire during annealing. TEM investigations were performed at 200 kV using a JEOL JEM-2200FS and at 300 kV using a FEI Titan Themis 60-300. First results were obtained by ex-situ TEM analysis of as-grown TiO2 nanowires and nanowires, which were annealed at 500 °C for 4 h. These ex-situ analysis confirm that both, as-grown and annealed nanowires, have the rutile crystal structure. Defects, present in the as-grown state, can be removed by the thermal treatment. Concurrently, a structural transformation inside the nanowires occurs resulting in faceted voids of several nanometer in diameter. Using tilt series from -70° to +70° in high-angle annular dark-field (HAADF) scanning (S)TEM mode and the discrete iterative reconstruction technique (DIRT)[3], a TEM tomograph was obtained, which proved that these voids are solely formed inside the nanowire and not at the nanowire surface (Fig. 1). Further analysis including electron energy loss spectroscopy revealed changes of the oxidation state at the surface region of the voids during annealing, whereas the rutile TiO2 crystal structure was maintained.

HAADF-STEM in-situ heating experiments, performed in a JEOL JEM-2200FS with a DENSsolutions heating holder, enabled the direct observation of the structural changes inside the rutile TiO2 nanowires (Fig. 2). Using a slow heating ramp of 3.3°C/min, a sudden formation of these voids at around 500 °C could be observed. Heating at lower temperatures did not affect the structure of the nanowire and also an additional heating after the transformation (600°C, 1h) did not change the size and shape of the voids.  These ex-situ and in-situ observations are a decisive step to explain the mechanisms involved in this process in more detail.

The results of our TEM investigation were correlated to the properties of as-grown and annealed TiO2 nanowires. Here, we could show that the healing of the lattice defects upon annealing not only increased the performance of hybrid solar cells but also affects other properties of the nanowires e.g. chemical stability.

 

 

[1] A. Wisnet et al., Crystal Growth & Design 2014, 14, 4658-4663.

[2] A. Wisnet et al., Advanced Functional Materials 2015, 25, 2601–2608.

[3] A. Zurner et al., Ultramicrocopy 2012, 115, 41-49.


Alena FOLGER (Düsseldorf, Germany), Andreas WISNET, Christina SCHEU
11:00 - 11:15 #6494 - MS02-OP226 Quantitative measurement of mean inner potential and specimen thickness from high-resolution off-axis electron holograms of ultra-thin layered WSe2.
Quantitative measurement of mean inner potential and specimen thickness from high-resolution off-axis electron holograms of ultra-thin layered WSe2.

Off-axis electron holography is a powerful tool to measure electrostatic and magnetic fields at the nanoscale inside a transmission electron microscope. The electron wave that has passed through a thin specimen can be recovered from an electron hologram and the phase can be related to the specimen thickness or the electrostatic potential in and around the specimen. However, dynamical diffraction may cause a deviation from the expected linear relationship between phase and specimen thickness, which emphasizes the need for comparisons with corresponding computer simulations.

Here, we study few-layer-thick two-dimensional WSe2 flakes by off-axis electron holography. Voronoi tessellation is used to spatially average the phase and amplitude of the electron wavefunction within regions of unit-cell size (see Fig. 1). A determination of specimen thickness of the WSe2 is not possible from either the phase or the amplitude alone. Instead, we show that the combined analysis of phase and amplitude from experimental measurements and simulations allows an accurate determination of the local specimen thickness. Extremely thin specimens that are tilted slightly away from the [001] zone axis show an approximately linear relationship between phase and projected potential. If the specimen thickness is known, the electrostatic potential can be determined from the measured phase.

We used this combined approach to determine a value for the mean inner potential of 18.9 ± 0.8 V for WSe2, which is approximately 10% lower than the value calculated from neutral atom scattering factors. In this way, a comparison of high-resolution electron holography data with simulations has been achieved on a quantitative level, enabling an assessment of the experimental conditions under which electrostatic potentials can be extracted directly from the phases of measured wavefunctions.

The authors are grateful to L. Houben, M. Lentzen, A. Thust, J. Caron and C. B. Boothroyd for discussions, as well as A. Chaturvedi and C. Kloc from the School of Materials Science and Engineering, Nanyang Technological University, Singapore for providing the WSe2 crystals. We are also grateful to the European Research Council for an Advanced Grant and for funding by the German Science Foundation (DFG) grant MA 1280/40-1.


Florian WINKLER (Jülich, Germany), Amir H. TAVABI, Juri BARTHEL, Martial DUCHAMP, Emrah YUCELEN, Sven BORGHARDT, Beata E. KARDYNAL, Rafal E. DUNIN-BORKOWSKI
11:15 - 11:30 #6708 - MS02-OP229 Atomic relaxation in ultrathin fcc metal nanowires.
Atomic relaxation in ultrathin fcc metal nanowires.

Capillary forces affect the atomic structure, and can lead to radically different atomic configuration in nanoscale compared to bulk counterpart. In this work, we demonstrate such a phenomenon in ultrathin Au nanowires. These Au nanowires can be fabricated by a simple wet-chemical approach, using oleylamine as a capping agent facilitating the anisotropic crystal growth. Detailed investigation of the atomic structure shows that the close-packed plane normal to the [111]-wire axis undergoes wrinkling leading to the formation of a saddle surface1. This phenomenon was captured in ab initio simulations (Fig. 1) and was corroborated with aberration-corrected transmission electron microscopic studies (Fig. 2). The reason of such relaxation can be attributed to the anisotropic surface stress of the bounding facets leading to out-of-plane displacement of the atoms. In terms of electronic structure, such atomic scale structural relaxation forces the d-band of the Au nanowire towards higher energy, and opens up a tantalizing possibility of using them as nanoscale sensors2, as electronic states near Fermi energy become available for hybridization.

Furthermore, we have generalized this phenomenon for other FCC metal nanowires such as Cu, Ag and Pt. Our recent simulations show that the strain in the FCC nanowire exhibits a systematic variation with the resultant stress along the nanowire orientation (Fig. 3). These results shed light on the atomic structure of FCC nanowires and open up a possibility of experimental investigation of the atomic structure for other FCC nanowires in detail.

References:

1. A. Roy et al., Nano Lett., 14, 4859-4866 (2014)

2. A. Roy et al., J. Phys. Chem. C, 118, 676-682 (2014)


Ahin ROY (Fukuoka, Japan), Knut MÜLLER, Kenji KANEKO, Andreas ROSENAUER, Jörg WEISMÜLLER, Abhishek Kumar SINGH, N RAVISHANKAR
11:30 - 11:45 #6764 - MS02-OP231 Examination of inas/insb heterointerfaces in nanowires.
Examination of inas/insb heterointerfaces in nanowires.

Examination of InAs/InSb heterointerfaces in Nanowires

Antimony based semiconductor nanowires (NWs) have been widely studied in recent years due to their large spin-orbit coupling, high Landé g-factor, and single subband conductance. They may become a key material in the field of quantum information processing and are currently used in the search for Majorana fermions by electrical transport [1]. Theory predicts that Majorana bound states can be realized in a 1D semiconductor coupled to a superconductor when exposed to an external magnetic field and manipulated by electrostatic gates [2]. Using NWs as a mean to achieve this goal has become even more promising after a recent report on epitaxial semiconductor/superconductor NW interfaces [3,4]. InSb NWs are expected to be the optimal material in this endeavor as the large spin-orbit interaction, and the possibility to induce superconductivity, in InSb makes it feasible to drive the wires into the topologically protected regime [2,5]. Realization of Majorana bound states in semiconductor/superconductor NWs would open the route to perform quantum information processing in networks by exploiting the unique non-abelian braiding statistics and non-trivial fusion rules which are inherent in Majorana Fermions [6].

In this work we present a detailed investigation of the growth of Au-seeded InSb NWs grown by molecular beam epitaxy (MBE) on (111)B InAs substrate. As InSb has proven difficult to grow directly on InAs substrates, an InAs stem mediates the growth as seen in Fig. 1. In Fig. 2 the growth deformation in this region is analyzed using Geometric Phase Analysis (GPA) and the abrupt interface indicates that the compositional change occur rapidly. To explore the growth dynamics of InSb, the transition region between InAs/InSb is investigated in order to study how incorporation of Sb affects the system. This analysis is performed using HR-TEM, Dark-Field Electron Holography (DFEH) [7], and Energy Dispersive x-ray Spectroscopy (EDS). In Fig. 3 a DFEH image is obtained by interfering the diffracted beam from the InAs part of the NW with that from the InSb part. Using DFEH the in-plane deformation in the growth direction is shown in Fig. 4.  Comparing the results from the aforementioned techniques with parameters used in the MBE during growth gives insight into the incorporation dynamics of Sb in NWs. Understanding the dynamics of NW growth is crucial in order to optimize and utilize these in novel devices. InSb NWs with two-facet Al shell are also investigated to explore the epitaxy of the interface, since the interface plays the major role in utilizing InSb/Al heterostructures for topological superconductivity and devices.

References:

[1] Kitaev, A.Y., 2001. Unpaired Majorana fermions in quantum wires. Physics-Uspekhi44(10S), p.131.

[2] Leijnse, M. and Flensberg, K., 2012. Introduction to topological superconductivity and Majorana fermions. Semiconductor Science and Technology27(12), p.124003.

[3] Chang, W., Albrecht, S.M., Jespersen, T.S., Kuemmeth, F., Krogstrup, P., Nygård, J. and Marcus, C.M., 2015. Hard gap in epitaxial semiconductor–superconductor nanowires. Nature Nanotechnology10(3), pp.232-236.

[4] Krogstrup, P., Ziino, N.L.B., Chang, W., Albrecht, S.M., Madsen, M.H., Johnson, E., Nygård, J., Marcus, C.M. and Jespersen, T.S., 2015. Epitaxy of semiconductor–superconductor nanowires. Nature Materials14(4), pp.400-406.

[5] Mourik, V., Zuo, K., Frolov, S. M., Plissard, S. R., Bakkers, E. P. A. M., & Kouwenhoven, L. P. (2012). Signatures of Majorana fermions in hybrid superconductor-semiconductor nanowire devices. Science336(6084), 1003-1007.

[6] Alicea, J., Oreg, Y., Refael, G., von Oppen, F. and Fisher, M.P., 2011. Non-Abelian statistics and topological quantum information processing in 1D wire networks. Nature Physics7(5), pp.412-417.

[7] Hÿtch, M., Houdellier, F., Hüe, F. and Snoeck, E., 2008. Nanoscale holographic interferometry for strain measurements in electronic devices. Nature453(7198), pp.1086-1089.


Aske GEJL (Copenhagen Ø, Denmark), Thomas KANNE, Erik JOHNSON, Thibaud DENNEULIN, Wolfgang JÄGER, Jesper NYGÅRD, Peter KROGSTRUP
11:45 - 12:00 #6918 - MS02-OP235 Focused ion beam based highly resistive and reproducible sub-5nm nanogaps in thin gold wire.
Focused ion beam based highly resistive and reproducible sub-5nm nanogaps in thin gold wire.

The measurements of physical properties such as electrical characterization of single or few nano-objects like nanoparticles, nanoclusters and single molecules require the fabrication of nanoscale gaps between electrodes [1]. It is difficult to fabricate electrical contacts at this scale with standard lithography techniques but focused ion beam (FIB) can fabricate nanogaps by milling thin metallic wires on the insulation substrate. It is a not only a mask less technique but also enables to fabricate large numbers of nanogaps with reproducible properties at the room temperature [2]. The FIB milled nanogaps are employed to determine single or few nano-entities such as nanoparticles and molecules [3]. Due to limitation of ion beam diameter and profile, the size of FIB milled nanogap is more than 10 nm thus not applicable to measure single less than 10nm object. We have developed two strategies to create sub-5nm gaps 1) by a control and precise dosage of ions during milling 2) by electrodeposition of gold in 30nm FIB cut gaps

1) A series of nanogaps are milled with size range from sub-5 to 30nm in thin gold wires, through precise control of the applied ion dosages with a range between 4.6 and 9.2 x 1010 ions/cm  using focused gallium ion beam at 30KV. As shown in figure 1a, the nanogap is not fully milled with the ion dosage of 4.6×1010 ions/cm, whereas the large nanogaps are milled with high ion dosage of 9.2 x 1010 ions/cm having resistances in 100-1000TΩ range (figure 1b). With ion dosage of 5×1010 ions/cm the nanogap begin to show up in gold nanowire (figure 2), which is verified by the current-voltage (I-V) characteristic demonstrating the resistance up to 12 TΩ. The Fowler-Nordheim tunneling effect is also observed in the sub-5 nm. The application of Simmon’s model to the milled nanogaps and the electrical analysis indicates that the minimum effective nanogap size approaches to 2.3 nm

2) The 30nm FIB cut nanogaps (figure 1b) are connected to a potentiostat controlled by GPES software. A 10 µL drop of diluted gold chloride is added on top of a FIB cut gap. In one of the configuration when working electrode (WE) is connected to to one side of nanoelectrode setup, other side of setup is connected to reference electrode (RE) and counter electrode(CE) is placed inside the drop on silsicon dioxide as shown in figure 3, well defined and well-shaped reduction of gap size has occurred with the growth on both electrodes from deposition of gold atoms (figure 4). The calculated growth rate in the nanogap is in the order of 1 nm/s and growth rates depend directly on the deposition time. The current-voltage characteristics have demonstrated the open gap resistance of 5nm nanogap in the order of 300TΩ. The FIB templating also improves the shape of electrochemically grown nanogaps.

These two strategies allow us to create large number of nanogaps thus enabling to measure physical properties of a sub 5nm single nano-object.

References:

1.         Nicholas, P. and S. Kyung-Ah, Alligator clips to molecular dimensions. Journal of Physics: Condensed Matter, 2008. 20(37): p. 374116.

2.         Blom, T., et al., Fabrication and characterization of highly reproducible, high resistance nanogaps made by focused ion beam milling. Nanotechnology, 2007. 18(28): p. 285301.

3.         Jafri, S.H.M., et al., Nano-fabrication of molecular electronic junctions by targeted modification of metal-molecule bonds. Scientific Reports, 2015. 5: p. 14431.


Syed Hassan Mujtaba JAFRI (Uppsala, Sweden), Hu LI, Ishtiaq Hassan WANI, Klaus LEIFER
12:00 - 12:15 #6942 - MS02-OP236 Exploring and Tailoring Structural Properties of the Two-Dimensional Family ofMXenes.
Exploring and Tailoring Structural Properties of the Two-Dimensional Family ofMXenes.

MXenes constitute a rather recent addition to two-dimensional materials, which exhibit a large range of tunable properties [1].  These materials can be synthesized in both bulk form as well as thin film structures. Although many of their properties remain unexplored they exhibit outstanding properties for applications in electrochemical energy storage devices, EESDs [2].

 

MXenes originate from a large family of naturally nanolaminated materials known as MAX phases, where M is a transition metal, A a group A element and X is either C or N, following the general formula Mn+1AXn., see e.g. the schematic in fig. 1a. Upon chemical etching, the A element leaves the MAX phase and results in single sheets, with surfaces functionalized, Tx, by O, OH and F to give the MXene formula Mn+1XnTx [3]. Bulk made MXene hence exhibit an extremely large surface area per volume, and are consequently attractive for energy storage. The material is easily intercalated and delaminated using standard methods.

 

To date, shy of 20 different 2D structures in this family has been synthesized and the wide range of choice of e.g. M elements enable a formidable playground for materials engineering. Among the more interesting structures synthesized to date, are those which are achieved while alloying different M elements to achieve (M1,M2)n+1Xn, see e.g. [4]. Through theoretical predictions and subsequent materials synthesis, we have been able to tune the material to exhibit out of-plane ordering as well as in-plane ordering, by means of repetitively alternating M elements. Additionally, by choosing the M elements carefully, we can incorporate those which are loosely bound and prone to chemical etching. This further enable a reduced MXene structure exhibiting in-plane vacancy ordering. The process is shown in fig. 1, where a MAX phase of 2M elements is schematically etched to produce the reduced, in-plane vacancy ordered structure as seen in cross-section (fig 1b) and plan-view (fig 1c). The corresponding synthesized structure is shown by HRSTEM methods in fig 2. These new MXenes additionally enable further tuning by vacancy ripening. Upon irradiating and heating the sample, the vacancies ripen to produce 2D sheets with a mesoporous structure, which exhibits a significant application in filtering and for enhancing ion mobilities in EESD applications.

 

This presentation will highlight the research front in this new family of materials, and present the opportunities given through its vast tailoring ability. Electron microscopy, and in particular aberration corrected STEM in combination with EELS and EDS has proven critical in the exploration of these new materials.

 

[1] M. Naguib, M. Kurtoglu, V. Presser, J. Lu, J. Niu, M. Heon, L. Hultman, Y. Gogotsi, M.W. Barsoum, Adv. Mater., 23 4248 (2011).

[2] M. Ghidiu, M. Lukatskaya, M. Zhao, Y. Gogotsi, M.W. Barsoum, Nature 516, 78 (2014).

[3] L.H. Karlsson, J. Birch, J. Halim, M.W. Barsoum, and P.O.Å. Persson Nano Lett., 15 4955 (2015).

[4] B. Anasori, Y. Xie, M. Beidaghi, J. Lu, B.C. Hosler, L. Hultman, P.R.C. Kent, Y. Gogotsi, and M.W. Barsoum ACS Nano, 9 9507 (2015).


Per PERSSON (Linköping, Sweden)
12:15 - 12:30 #6944 - MS02-OP237 Probing structural and electronic properties of h-BN by HRTEM and STM.
Probing structural and electronic properties of h-BN by HRTEM and STM.

After the discovery of graphene and its consequences in the field of nanoscience and nanomaterials, there has been a growing interest in 2D materials and also their vertical stacking due to unique properties and potential applications.[1] For instance, it was shown the transport properties of exfoliated graphene supported by hexagonal boron nitride (h-BN) could approach the intrinsic graphene limits.[2] Nevertheless, studying the structural properties of 2D materials and 2D heterostructures is crucial to understand their physical and chemical properties. Our motivations have been to exploit state of the art aberration-corrected high resolution transmission electron microscopy (HRTEM) and scanning tunneling microscopy (STM) to study the structure and electronic properties of graphene (G), h-BN and G/h-BN heterostructures.

 

HRTEM analyses were conducted with a JEOL ARM microscope equipped together with a cold FEG, an aberration corrector for the objective lens and a One view camera (Gatan). Notably, we used high-speed atomic-scale imaging to study with unprecedented dynamics (up to 25 fps) the nucleation and growth mechanisms of triangular holes in h-BN under beam irradiation (Figure 1). The direct observation of B and N atom sputtering and surface reconstruction processes allow understanding how the triangular shape and orientation of holes are maintained during the growth. Interestingly, by studying the effects of the electron dose and the number of BN layers, we demonstrate that these atomic-scale processes are simultaneously driven by kinetic and thermodynamic effects. Further works are in progress to study the stability of h-BN/G stacking under electron-beam irradiation. 

 

STM analyses were carried out with low temperature STM at 4 K, on 2D heterostructures that consist in a few layers of graphene doped with nitrogen on thick exfoliated flakes of BN deposited on SiO2.  Remarkably, we show that STM allows identifying and characterizing ionization defects within the BN flakes below the graphene layers (Figure 2). This study opens new avenues to probe the electronic interactions between this two stacked materials.

[1] Geim & al., Nature, 499, 419 (2013)

[2] J. M. Xue & al., Nature Mater, 10, 282 (2011)


Ouafi MOUHOUB (Chatillon), Christian RICOLLEAU, Guillaume WANG, Hakim AMARA, Amandine ANDRIEUX, Nelly DORVAL, Frédéric FOSSARD, Pierre LAVENUS, Jerome LAGOUTE, Van Dong PHAM, Pai WOEI WU, Annick LOISEAU, Damien ALLOYEAU
Salle Prestige Gratte Ciel

"Wednesday 31 August"

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IM1-III
10:15 - 12:30

IM1: Tomography and Multidimensional microscopy
SLOT III

Chairpersons: Sara BALS (Chairperson, Antwerpen, Belgium), Wolfgang LUDWIG (Chairperson, Lyon, France), Sergio MARCO (Chairperson, Paris, France)
10:15 - 10:45 #5714 - IM01-S33 3D Mapping of electric potentials and magnetic fields at the nanoscale using Electron Holographic Tomography.
3D Mapping of electric potentials and magnetic fields at the nanoscale using Electron Holographic Tomography.

Off-axis electron holography (EH) is a TEM technique that records the phase information of an electron wave transmitted through a thin specimen in an electron hologram. By reconstructing this phase information, it enables electrostatic and magnetic potentials to be mapped quantitatively with high spatial resolution and, when combined with tomography to electron holographic tomography (EHT), in three dimensions (3D) [1,2]. Tomograms obtained by EHT provide the 3D mean inner potential (MIP) distribution of nanoscale materials from which the 3D morphology and the chemical composition can be inferred [3]. Moreover, functional potentials, e.g., introduced by doping of impurities in semiconductors, have been successfully revealed in 3D [4]. Recently, we succeeded in the 3D reconstruction of the axial component of the B-field prevailing in magnetic nanowires [5,6].

EHT as applied on magnetic samples proceeds as follows (see Fig. 1): (1) an electron hologram tilt series (ideally covering a range of 360°) is acquired, (2) the phase image tilt series is reconstructed from the holograms, (3) electric and magnetic phase shifts are separated by computing half of the sum/difference between opposite (180° tilted) projections, and (4) both the electric potential and the B-field component parallel to the tilt axis are reconstructed with tomographic techniques. Here, we report EHT studies achieved by means of tomography-dedicated TEM sample holders, in combination with advanced in-house developed software packages for acquisition, alignment and tomographic reconstruction.

Fig. 2 shows the 3D electric potential reconstruction of a GaAs/AlGaAs core-multishell nanowire (NW) grown by metalorganic vapour phase epitaxy (MOVPE) using an Au nanoparticle (NP) as catalyst. Such NWs may serve as novel coherent nanoscale light sources (lasers), because they provide an effective gain medium, low-loss optical waveguiding, and strong optical confinement for axially guided optical modes. The difference in the MIP allows discriminating between GaAs and AlGaAs within the NW. Longitudinal (Fig. 2b) and cross-sectional (Fig. 2e) 2D slices averaged over a well-defined thickness reveal not only the GaAs core and the AlGaAs shell, but also a 5nm thin GaAs shell within the AlGaAs, which acts as a quantum well.

Fig. 3 comprises two recent EHT studies revealing the B-field within a Co nanowire (NW) [5] and a Co2FeGa Heusler alloy NW [6] both with spatial resolution higher than 10 nm. The reconstructions of the dominant axial component of the magnetic induction exhibit a small inversion domain at the apex of the Co NW, whereas at the Co2FeGa NW, a magnetic dead layer of 10 nm width could be revealed.

The powerful approach presented here is widely applicable to a broad range of 3D electric and magnetic nanostructures and may trigger the progress of novel nanodevices.



[1] P A Midgley and R E Dunin-Borkowski, Nat. Mater. 8 (2009) p. 271.

[2] D Wolf, A Lubk, F Röder and H Lichte, Curr. Opin. Solid State and Mater. Sci. 17 (2013) p. 126.

[3] A Lubk, D Wolf, P Prete, N Lovergine, T Niermann, S Sturm and H Lichte, Phys. Rev. B 90 (2014) p. 125404.

[4] D Wolf, A Lubk, A Lenk, S Sturm and H Lichte, Appl. Phys. Lett. 103 (2013) p. 264104.

[5] D Wolf et al., Chem. Mater. 27 (2015) p. 6771.

[6] P Simon, D Wolf, C Wang, A A Levin, A Lubk, S Sturm, H Lichte, G H Fecher and C Felser, Nano letters 16 (2016) p. 114.

[7] We thank N Lovergine of University of Salento, Lecce for provision of the GaAs/AlGaAs core-multishell nanowire samples.

[8] This work was supported by the European Union under the Seventh Framework Program under a contract for an Integrated Infrastructure Initiative Reference 312483-ESTEEM2.


Daniel WOLF (dresden, Germany), Axel LUBK, Hannes LICHTE
Invited
10:45 - 11:00 #6431 - IM01-OP046 Quantitative elemental and bonding EELS tomography of a complex nanoparticle.
Quantitative elemental and bonding EELS tomography of a complex nanoparticle.

Comprehending the properties of complex nanoscale materials requires not just study of their morphology, but also determining the distribution and quantity of specific elements or phases, and the nature of bonding within these. Here we present quantitative 3D elemental and bonding mapping of a complex boron nitride based nanoparticle. This is achieved through a combination of electron energy-loss spectroscopy (EELS) in the scanning transmission electron microscope (STEM), novel EELS analysis methods and compressed sensing tomographic reconstruction [1].

For this study, a low-loss and core-loss STEM-EELS tilt series of spectrum images was recorded over the angular range -70° to 70° with a 17.5° tilt increment. The experiment was performed at 80 kV using a Tecnai Osiris with Gatan Enfinium spectrometer equipped with DualEELS. Figure 1a shows the high angle annular-dark field (HAADF) tilt-series images of the nanoparticle studied. The nanoparticle clearly possesses intricate structure, but the HAADF images are not fully revealing, obviating need for tomographic and analytical investigation.

EELS can achieve accurate absolute quantification of elemental composition without the need for standards, opening the door to quantitative analytical tomography. Moreover, the fine structure exhibited within the first tens of eV above an EELS ionisation edges is related to the local density of states, and hence, carries a wealth of information about the electronic environment of the ionised atom. However, direct measurement of the fine structure of pure compounds is only possible in homogeneous materials and in atomically resolved EELS of two-dimensional mono-layered materials. More commonly, EELS measurements comprise a linear combination of the fine structure corresponding to different atomic environments. Here we have devised a novel method to extract the fine structure of individual compounds from a multi-dimensional EELS dataset, based on a combination of curve fitting [2] and blind source separation [3]. Major practical complications with curve fitting for EELS quantification, especially in multi-dimensional datasets, are ill-conditioning and divergence of non-linear optimisation. To address this we have developed a new parallel Smart Adaptive Multidimensional Fitting (SAMFire) algorithm that learns the starting parameters from the dataset as the fitting progresses [4]. The analysis reveals that the particle is composed of boron (in different compounds), nitrogen, oxygen, carbon, silicon and calcium (Figure 1b, c). The EELS data analysis was performed using HyperSpy [5].

Tomographic reconstruction of the obtained tilt series of EELS elemental and bonding maps was performed using the FISTA algorithm with 3D total variation regularization [6]. Figure 2 displays a 3D visualization of the three boron compounds found in the sample, namely boron oxide, pure boron and boron nitride. Despite the small number of tilt series maps, the tomographic reconstruction reveals comprehensively the details of this complex 3D structure and provides new insight on the growth mechanism of the particle.

   

   

[1] R. Leary et al. Ultramicroscopy 131 (2013): 70–91

[2] T. Manoubi et al. Microscopy Microanalysis Microstructures 1.1 (1990): 23-39.

[3] F. de la Peña et al. Ultramicroscopy 111.2 (2011): 169-176.

[4] T. Ostasevicius et al. (in preparation).

[5] F. de la Peña et al. (2016). HyperSpy 0.8.4. Zenodo. 10.5281/zenodo.46897. http://hyperspy.org

[*] All authors acknowledge the support received from the European Union Seventh Framework Program under Grant Agreement 312483 – ESTEEM2 (Integrated Infrastructure Initiative – I3) . FDLP, TO, RKL and PM acknowledge support from the ERC under grant number 291522-3DIMAGE; and FDLP and CD under grant number 259619 PHOTO EM. RKL acknowledges a Junior Research Fellowship at Clare College. RA acknowledges funding from the Spanish MINECO (FIS2013-46159-C3-3-P), and from the EU under Grant Agreement 604391 Graphene Flagship.


Francisco DE LA PEÑA (Cambridge, United Kingdom), Tomas OSTAŠEVIČIUS, Rowan K. LEARY, Caterina DUCATI, Paul A. MIDGLEY, Raúl ARENAL
11:00 - 11:15 #6722 - IM01-OP052 STEM optical sectioning for imaging screw dislocation core structures.
STEM optical sectioning for imaging screw dislocation core structures.

The introduction of spherical-aberration correctors in STEM has allowed an improvement in spatial resolution up to the sub-angstrom scale also accompanied by a reduction of the depth of focus (due to the increase in probe convergence angles), which in a modern instrument is just a few nanometers, thus often less than the sample thickness. This can be exploited to extract information along the beam direction by focusing the electron probe at specific depths within the sample. This technique has already been used to observe the depth-dependence of the strain field due to the Eshelby twist associated with dislocations containing a screw component in thin STEM samples. The measurement of the magnitude of the displacement confirmed the screw Burgers vector for dislocations in GaN [1] and allowed the identification of a new dissociation reaction associated with mixed [c+a] dislocations [2]. The optical sectioning approach has also been applied to the direct observation of the c-component of the dissociation reaction of a mixed [c+a] dislocation in GaN by imaging a dislocation lying transverse to the electron beam [3].

Here we show how optical sectioning in high-angle annular dark-field (HAADF) STEM imaging conditions can be used to image the core structure of screw dislocations at atomic resolution. In particular, we evaluate using simulations whether the edge and screw displacements associated with the delocalization of ½[111] screw dislocations in body-centered cubic (BCC) metals [4] can be detected. In Figure 1 we show that the helicoidal displacements around a screw dislocation can be imaged with the dislocation lying transverse to the electron beam by optically sectioning the plane containing the dislocation.

In order to reveal how the edge components of the dislocation contribute to the observed contrast we have created two atomistic models, one using the anisotropic linear-elastic displacements around the dislocation, which is not capable of modelling the core delocalisation, and the other using the core structure relaxed using the Bond Order Potential for W which does predict a delocalised core. Figures 2 a) and b) show the respective HAADF simulated images. Figure 2 c) is the RGB image made from the (101) component of the Fourier Transform (FT) (shown in Figure 2 d)) of both images. It is possible to observe that the shifts in this Fourier component occur along two distinct lines lying parallel to [111]. The superposition of both filtered images shows that there is a discrepancy on both sides of the core between both models. It is therefore apparent that the delocalisation of the core can in principle be detected using electron-optical sectioning [5,6].

References

[1] J. G. Lozano, et al. Phys. Rev. Lett. 113 (2014) 135503.

[2] P.B. Hirsch, et al. Philosophical Magazine, 93 (2013) 3925.

[3] H. Yang, et al. Nature Communications, 6 (2015) 7266.

[4] P.B. Hirsch, Fifth Internat. Congs. Crystallography, Cambridge, 139 (1960)

[5] D. Hernandez-Maldonado, et al. manuscript in preparation

[6] The SuperSTEM Laboratory is the U.K National Facility for Aberration-Corrected STEM, supported by the Engineering and Physical Science Research Council (EPSRC). 


David HERNANDEZ-MALDONADO (Warrington, United Kingdom), Hao YANG, Lewys JONES, Roman GRÖGER, Peter B HIRSCH, Quentin M RAMASSE, Peter D NELLIST
11:15 - 11:30 #6413 - IM01-OP044 Vectorial field tomography from single projection for cylindrically symmetric nanostructures.
Vectorial field tomography from single projection for cylindrically symmetric nanostructures.

One-dimensional (1D) nanostructures have been regarded as the most promising building blocks for nanoelectronics and nanocomposite material systems as well as for alternative energy applications [1]. Magnetic nanowires with circular cross-section, are of utmost importance from theoretical and technological aspects [2]. 1D carbon-based nanostructures such as carbon nanotubes are amongst the best candidates for field emission displays and new high-brightness electron sources [3]. The confinement effects in 1D nanostructures can alter their properties and subsequently their behavior significantly. Hence it is necessary to understand the strong effect of their size on their three-dimensional (3D) properties such as the magnetic and electric fields associated with nanowires and nanotubes completely before they can be used in applications. There are currently very few methods, which have the capability to visualize the complete 3D fields associated with nanowires. In this work, we show that using a combination of symmetry arguments and electron-optical phase shift data obtained using TEM, it is possible to recover the entire 3D magnetic or electric field in and around nanowires and nanotubes from a single image.

The phase change φe+φm of an electron wave traveling through a thin foil can be expressed in terms of tomographic quantities [4]. The phase shift can be recovered experimentally using various techniques such as transport-of-intensity based methods or off-axis electron holography. Nominally, determining the 3D magnetic field or 3D elestrostatic potential requires recording a series of phase shift images as the sample is tilted about its axis. However, in a 1D nanostructure such as a nanocylinder that is uniformly magnetized along its long axis, the magnetic field possesses cylindrical symmetry with respect to the long axis. Similarly, carbon nanotubes under applied bias exhibit a cylindrically symmetric potential and electric field. Exploiting these conditions of cylindrical symmetry, we can reconstruct the full 3D magnetic or electric field associated with a nanowire from a single phase image using the inverse Abel transform. Simulations were performed for a uniformly magnetized sphere, which also possesses cylindrical symmetry to analyze the fidelty of the reconstruction algorithm. Fig. 1(a) shows the magnetic phase shift of such a uniformly magnetized sphere, (b) shows the derivative with respective to the horizontal axis (∂φm/∂x) showing the cylindrical symmetry, and (c) the 3D reconstructed magnetic induction using the single image method developed in this work. Experiments were performed on nickel nanowires that were uniformly magnetized to reconstruct the 3D magnetic induction. Similarly the 3D electric field was reconstructed from in-situ biased carbon cone nanotips under varying applied bias.

References

[1] C. M. Lieber, Solid State Communications, 107, 607 (1998).

[2] C. Chappert, A. Fert, F. N. Van Dau, Nature Materials, 6, 813 (2007).

[3] N. de Jonge, Y. Lamy, K. Schoots, T. H. Oosterkamp, Nature, 420, 393 (2002).

[4] C. Phatak, M. Beleggia, and M. De Graef, Ultramicroscopy, 108, 503 (2008)


Charudatta PHATAK, Ludvig DE KNOOP, Florent HOUDELLIER, Martin HYTCH, Aurélien MASSEBOEUF (Toulouse)
11:30 - 11:45 #6588 - IM01-OP051 Laboratory diffraction contrast tomography – applications and future directions.
Laboratory diffraction contrast tomography – applications and future directions.

Determining crystallographic microstructure of a given material in 2D can be challenging.  Further extending such an investigation to 3D on meaningful volumes (and without sample sectioning) can be even more so. Yet reaching this insight holds tremendous value for 3D materials science since the properties and performance of materials are intricately linked to microstructural morphology including crystal orientation. Achieving direct visualization of 3D crystallographic structure is possible by diffraction contrast tomography (DCT), albeit only available at a limited number of synchrotron X-ray facilities around the world. Recent developments, however, have made DCT possible on an X-ray microscope with a laboratory source. 

 

The introduction of diffraction contrast tomography as an additional imaging modality on the ZEISS Xradia 520 Versa laboratory X-ray microscope has opened up a whole new range of possibilities for studies of the effect of 3D crystallography on materials performance. The capability to link directly the crystallographic and grain microstructure information with that obtained via conventional absorption or phase contrast imaging, non-destructively in three-dimensions and all in the laboratory, creates a powerful and easy to access tool.   [1]  Using a polychromatic X-ray source, laboratory diffraction contrast tomography technique (LabDCT) takes advantage of the Laue focusing effect, improving diffraction signal detection and allows handling of many and closely spaced reflections. Additionally, LabDCT opens the way for routine, non-destructive and time-evolution studies of grain structure to complement destructive electron backscatter diffraction (EBSD) end-point characterization. Combination of grain information with microstructural features such as cracks, porosity, and inclusions all derived non-destructively in 3D presents new insights for materials characterization of damage, deformation and growth mechanisms. Furthermore, 3D grain orientation data is a valuable input into multi-scale, multi-layered modeling platforms that can virtually evaluate mechanical properties to produce high fidelity simulation results. Here, we introduce the LabDCT technique and demonstrate its unique capability through a selection of application examples for materials science as well as discuss innovative methods to extend the current capabilities of the technology for a better understanding of materials structure evolution in 3D.

 

[1] McDonald, S.A. et al. Non-destructive mapping of grain orientations in 3D by laboratory X-ray microscopy. Scientific Reports 5, 14665 (2015). doi: 10.1038/srep14665


Leah LAVERY (Pleasanton, USA), Christian HOLZNER, Hrishikesh BALE, Arno MERKLE, Samuel MCDONALD, Philip WITHERS, Yubin ZHANG, Dorte JUUL JENSEN, Peter REISCHIG, Erik LAURIDSEN
11:45 - 12:00 #5911 - IM01-OP040 Electron tomography based on highly limited data using a neural network reconstruction technique.
Electron tomography based on highly limited data using a neural network reconstruction technique.

Gold nanoparticles are studied extensively due to their unique optical and catalytical properties. Their exact shape determines the properties and thereby the possible applications. Electron tomography is therefore often used to examine the three-dimensional shape of nanoparticles. However, since the acquisition of the experimental tilt series and the 3D reconstructions are very time consuming, it is difficult to obtain statistical results concerning the 3D shape of nanoparticles. We propose a new approach for electron tomography that is based on artificial neural networks, which enables us to reduce the number of projection images with a factor of 5 or more1.

The application of neural network filtered backprojection method (NN-FBP)2 to electron tomography consists of two phases: (i) a learning phase, in which full tilt series and their corresponding reconstructions are used to calibrate the reconstruction algorithm and (ii) a reconstruction phase, in which large batches of limited tilt series (i.e. using fewer projection images) are rapidly reconstructed. The parameters of the NN-FBP are trained by high quality 3D reconstructions, based on 151 projection images, in the learning phase. In the reconstruction phase, a tilt series of only 10 projection images of a gold nanoparticle is used as input. As opposed to previous advanced reconstruction methods, specific prior knowledge is not explicitly used in the NN-FBP method. Also, since NN-FBP is based on the efficient Weighted Backprojection algorithm, it is computationally efficient as well, enabling high throughput of 3D reconstructions. We show that the NN-FBP reconstruction algorithm is able to yield electron tomography reconstructions based on highly limited data with a comparable quality to a reconstruction based on a full data series with a tilt increment of 1° (Figure 1).

The decrease in acquisition time and the use of an efficient reconstruction method enables us to examine a broad range of nanostructures in a statistical manner. Using the NN-FBP approach, the average radius of a batch of 70 nanospheres was obtained. These results confirm the reliability of the NN-FBP algorithm and demonstrate the possibility of combining electron tomography and statistical measurements (Figure 2).

 

[1]      Bladt, E.; Pelt, D. M.; Bals, S.; Batenburg, K. J. Ultramicroscopy 2015, 158, 81–88.

[2]      Pelt, D. M.; Batenburg, K. J. IEEE Trans. Image Process. 2013, 22, 5238–5251.

The authors acknowledge financial support from the Research Foundation - Flanders (FWO).


Eva BLADT (Antwerpen, Belgium), Daniel PELT, Joost BATENBURG, Sara BALS
12:00 - 12:15 #6191 - IM01-OP043 Electron tomography with sub-5-second temporal resolution for dynamic in situ transmission electron microscopy.
Electron tomography with sub-5-second temporal resolution for dynamic in situ transmission electron microscopy.

           Electron tomography (ET) is an important technique for the study of the three dimensional morphology, structure and chemical composition of nanoscale materials in the transmission electron microscope (TEM). Although ET is potentially a powerful tool for in situ three-dimensional TEM studies of catalytic reactions, growth processes, phase transformations, switching mechanisms and defect nucleation, motion and interactions, its application to dynamic experiments has been limited, since typical acquisition times for tilt series are typically tens of minutes or longer [1]. 

            We have recently demonstrated the rapid acquisition of a tomographic tilt series comprising approximately 3500 images between +30° and -70° in only 3.5 s, as shown in Fig. 1) [2]. Here, we apply the technique to the three-dimensional imaging of the thermal segregation of an InAs V-shaped nanomembrane [3]. The membrane was heated in situ in an FEI Titan TEM up to a temperature of 420 °C. Changes in membrane morphology were tracked by acquiring images on a Gatan K2-IS camera at 400 frames per second while continuously tilting the specimen between +60° and -65°. Each tilt series (i.e., one rotation in one direction) was acquired in approximately 4.3 s and comprised ~1700 frames. Selected frames are shown in Figs 2 and 3.

            The reconstruction of time-dependent (four-dimensional) tilt series can be performed using two approaches: i) Reconstruction of each individual tilt series and interpolation between each reconstruction in the time domain, resulting in a time resolution that is limited by the acquisition time for each tilt series (i.e., 4.3 s); ii) Model-based reconstruction, involving tracking of changes between individual frames within each tilt series, resulting in sub-second temporal resolution. We are presently pursuing both approaches. 

           We are grateful to Cory Czarnik and Ana Pakzad from Gatan Inc. for making the K2 IS camera available for the experiments and to the European Research Council for an Advanced Grant.

           References:

[1] S. Malladi et al. Nano Lett., 14: 384, 2014. DOI: 10.1021/nl404565j

[2] V. Migunov et al.  Sci. Rep., 5: 14516, 2015. DOI:10.1038/srep14516

[3] S. Conesa-Boj, et al. ACS Nano, 6: 10982, 2012. DOI: 10.1021/nn304526k


Vadim MIGUNOV (Jülich, Germany), Rowan K. LEARY, María DE LA MATA, Eleonora RUSSO-AVERCHI, Gözde TÜTÜNCÜOGLU, Anna FONTCUBERTA I MORRAL, Jordi ARBIOL, Rafal E. DUNIN-BORKOWSKI
12:15 - 12:30 #6521 - IM01-OP050 New approach for low dose electron diffraction tomography.
New approach for low dose electron diffraction tomography.

Due to strong interaction of electrons with matter, 3D electron diffraction tomography has been proven to be a reliable method to solve structures of very small crystals, compared to X-ray diffraction; even for small protein crystals [1]. 

Several procedures for automated acquisition of tomographic diffraction data sets have been described [2, 3], using precession technique or discrete beam tilt perpendicular to the goniometer tilt axis. However, those mentioned methods are mainly used for less beam sensitive materials and are not suitable for low dose applications.

Shi et al. [4-7] refined the collection of 3D data sets under low dose condition (less than 10 e-2). Here, the camera system is continuously acquiring diffraction data during a continuous tilt of the goniometer. This allows to completely scan the Fourier space. It turned out that the stability of the goniometer tilt speed and the limited flexibility of the tilt acquisition parameters are problematic.


Here, we present a newly developed automatic data acquisition system, combining real-time direct control of the TEM-deflection systems, the goniometer tilt and the acquisition of high-resolution diffraction patterns with a synchronized CMOS camera. This can be realized by the TVIPS Universal Scan Generator (USG), controlling eight TEM deflection coils, i. e. four beam deflection coils and four image deflection coils.

For a static goniometer alpha, the total beam tilt range (±3° to ±5°, depending on the TEM) can be fragmented by a defined beam tilt range, e.g. 0.5° (see Fig. 1). During the camera exposure time the beam is continuously tilted for this defined range (e.g. 0.5°). The continuous beam sweep during exposure time ensures the complete sampling of the Fourier space. 

Several crystal structures (Carbamazepin: C15H12N2O, bismuth oxychloride: BiOCl, Mayenite: Ca12Al14O33) have been successfully solved by this method. The total acquisition time for 190 high resolution (1Å resolution) diffraction patterns is about 15 minutes, with a total electron dose of about 10 e-2. The collected 3D electron diffraction data sets were processed using the EDT-PROCESS software [8].


 

References

1.       J. A. Rodriguez, M. I. Ivanova, M. R. Sawaya, D. Cascio, F. E. Reyes, D. Shi,S. Sangwan, E. L. Guenther, L. M. Johnson, M. Zhang, L. Jiang, M. A. Arbing, B. Nannenga, J. Hattne, J. Whitelegge, A. S.     Brewster, M. Messerschmidt, S. Boutet, N. K. Sauter, T.Gonen and D. Eisenberg: Structure of the toxic core of α-synuclein from invisible crystals, Nature (2015);  525 (7570).

2.       U. Kolb, T. Gorelik, C. Kübel, M.T. Otten and D. Hubert: Towards automated diffraction Tomography: part I- data acquisition, Ultramicroscopy (2007) ; 107(6-7):507-13.

3.       D. Zhang, P. Oleynikov, S. Hovmoller and X. Zou:Collecting 3D electron diffraction data by the rotation method, Z. Kristallogr (2010); 225 94–102.

4.       D. Shi, B.L. Nannenga, M.G. Iadanza and T. Gonen: Three-dimensional electron crystallography of protein microcrystals, eLife (2013); 2:e01345.

5.       B.L. Nannenga, D. Shi, j. Hattne, F.E. Reyes and T. Gonen: Structure of catalase determined by MicroED, eLife (2014); 3:e03600.

6.       B.L. Nannenga and T. Gonen:Protein structure determination by MicroED, Current Opinion in Structural Biology (2014); Volume 27:24–31.

7.       B.L. Nannenga, D. Shi, A.G.W. Leslie and T. Gonen: High-resolution structure determination by continuous-rotation data collection in MicroED, Nature Methods 11(2014); 927–930.

8.     M. Gemmi, P. Oleynikov: Scanning reciprocal space for solving unknown structures: energy filtered diffraction tomography and rotation diffraction tomography methods. Z. für Krist. 228 (2013) 51-58.

 


Reza GHADIMI, Hans TIETZ (Gauting, Germany), Peter OLYENIKOV
Salle Gratte Ciel 1&2

"Wednesday 31 August"

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IM7-I
10:15 - 12:30

IM7: Phase Microscopies
SLOT I

Chairpersons: David COOPER (Engineer) (Chairperson, Grenobles, France), Christoph KOCH (Professor) (Chairperson, Berlin, Germany)
10:15 - 10:45 #8663 - IM07-S50 Limitations and challenges in off-axis electron holography of electromagnetic fields in nanoscale materials.
Limitations and challenges in off-axis electron holography of electromagnetic fields in nanoscale materials.

In contrast to most conventional transmission electron microscopy (TEM) techniques, which only allow the spatial distribution of image intensity to be recorded, off-axis electron holography allows the phase shift of the electron wave that has passed through an electron-transparent specimen to be measured. The phase shift can, in turn, be used to provide information about local variations in magnetic induction and electrostatic potential within and around the specimen. Recent developments in the technique include the reconstruction of electrostatic potentials and magnetic fields in three dimensions, the use of advanced specimen holders with multiple electrical contacts to study nanoscale working devices, improvements in the stability of transmission electron microscopes to optimise phase sensitivity and the development of new approaches for improving temporal resolution using both direct electron detectors and double exposure electron holography. We are currently using the technique to characterize electrostatic potentials and magnetic fields in a wide variety of nanoparticles, nanostructures and thin films that are subjected to electrical biases and externally applied magnetic fields, as well as to elevated and reduced temperatures. Figure 1 shows representative results obtained from a study of the thermomagnetic behaviour of nanoscale grains of magnetite during heating in situ in the TEM. The magnetic induction maps show first a horseshoe-like magnetic state and then magnetic phase contours that flow from the bottom to top of the grain at higher temperature.

 

An important limitation of backprojection-based algorithms for reconstructing magnetic fields in three dimensions is the presence of artefacts resulting from incomplete tilt series of phase images and the inability to include additional constraints and known physical laws. Accordingly, one of our aims is the development of a robust model-based approach that can be used to reconstruct the three-dimensional magnetization distribution in a specimen from phase images recorded as a function of specimen tilt angle using off-axis electron holography. In order to perform each reconstruction, we generate simulated magnetic induction maps by projecting best guesses for the three-dimensional magnetization distribution in the specimen onto two-dimensional Cartesian grids. Our simulations make use of known analytical solutions for the phase shifts of simple geometrical objects, with numerical discretization performed in real space to avoid artefacts generated by discretization in Fourier space, without a significant increase in computation time (Figs 2 and 3). Our forward simulation approach is used within an iterative model-based algorithm to solve the inverse problem of reconstructing the three-dimensional magnetization distribution in the specimen from tilt series of two-dimensional phase images recorded about two independent tilt axes. Results will be presented from studies of magnetite nanocrystals, lithographically patterned magnetic elements and magnetic skyrmions examined as a function of temperature and applied magnetic field. At the same time, we are developing a similar algorithm for the reconstruction of three-dimensional charge density distributions in materials. Preliminary results will be presented from studies of charge distributions in electrically biased needle-shaped specimens, which require the analysis of differences between phase images recorded using two applied voltages, in order to subtract the mean inner potential to the phase shift.

 

The above studies are part of a wider program of research aimed at recording off-axis electron holograms of nanoscale materials and devices in the presence of multiple external stimuli. Further examples will be presented from studies of electrically biased resistive switching devices and two-dimensional flakes of transition metal dichalcogenides, whose electrical properties can be influenced strongly by the presence of contamination and defects, as well as by their interfaces to metal contacts. We are grateful to J. Ungermann, M. Riese, G. Pozzi, W. Williams, A. R. Muxworthy, M. Farle, M. Beleggia, T. F. Kelly and N. Kiselev for valuable contributions to this work and to the European Research Council for an Advanced Grant.


Rafal E. DUNIN-BORKOWSKI (Jülich, Germany), Trevor P. ALMEIDA, Jan CARON, András KOVÁCS, Patrick DIEHLE, Florian WINKLER, Fengshan ZHENG, Amir H. TAVABI, Vadim MIGUNOV, Zi-An LI
Invited
10:45 - 11:00 #5876 - IM07-OP129 Direct Visualization of Magnetic Skyrmion by Aberration-Corrected Differential Phase Contrast Scanning Transmission Electron Microscopy.
Direct Visualization of Magnetic Skyrmion by Aberration-Corrected Differential Phase Contrast Scanning Transmission Electron Microscopy.

    Magnetic skyrmion is a topologically protected quantum spin texture. It is so stable and expected to be utilized for future memory devices featuring ultralow energy consumption. However, influences of structural defects in real materials remain to be elucidated in such practical applications. Since magnetic skyrmion is a nano-scale magnetic structure, visualization techniques with very high spatial resolution are essential to investigate such influences of nano-scale structural defects, such as edges, dislocations and grain boundaries on magnetic skyrmion. Here, we present the direct visualization of magnetic skyrmion lattice in a thin film specimen of FeGe1-xSix by aberration-corrected differential phase-contrast scanning transmission electron microscopy (DPC-STEM) taking advantages of a segmented annular all-field (SAAF) detector [1] connected via photomultiplier tubes with a high-speed numerical processer.

    Polycrystalline FeGe1-xSix was grown from FeGe0.8Si0.2 ingot by conventional solid-state reaction annealed at 900 °C for 100 hours.  A thin film specimen was fabricated from a bulk crystal by using an Ion Slicer (EM-9100IS, JEOL, Ltd.). For DPC STEM observations, we used a STEM (JEM-2100F, JEOL, Ltd.) equipped with a probe-forming aberration corrector (CEOS, GmbH) and a Schottky field emission gun operated at 200 kV.  This microscope was equipped with a SAAF detector.  We used a double-tilt liquid-nitrogen cooling specimen holder (Model 636, Gatan, Inc.).  Analysis of DPC STEM images was done either online by using a direct reconstruction system [2] implemented as an application of LabView software (National Instruments, Inc.) running on Windows or offline by using a program written in Digital Micrograph Scripting language (Gatan, Inc.).

    Figure 1a shows a schematic diagram of electron-optical system of DPC STEM used in the present study.  In-plane magnetization can be mapped by analyzing the Lorentz deflection of electron beam using segmented annular detector as schematically shown in Fig. 1b.  As shown in Fig. 2a, a set of four images is selected from sixteen images obtained by the segmented detector.  Such images are first converted into two images corresponding to a horizontal and a vertical component image of Lorentz deflection (Fig. 2b).  Finally, the two Lorentz deflection images are analyzed to show a in-plane magnetization vector, intensity, and magnetic helicity images as shown in Fig. 2c.  Figure 3 demonstrates the live reconstruction of in-plane magnetic field and intensity of a magnetic skyrmion lattice.  A unique structural relaxation mechanism in a magnetic Skyrmion domain boundary core, revealed by the technique for the first time [3], will be presented in detail.

 

References

 

[1] N. Shibata et al., J. Electron Microsc. 59 (2010) 473.

[2] N. Shibata et al., Sci. Rep. 5 (2015) 10040.

[3] T. Matsumoto et al., Sci. Adv. 2 (2016) e1501280.

[4] This work was supported by the Japan Science and Technology Agency SENTAN and Precursory Research for Embryonic Science and Technology. A part of this work was conducted at the Research Hub for Advanced Nano Characterization, The University of Tokyo, supported under “Nanotechnology Platform” (project No. 12024046) sponsored by MEXT, Japan. T.M. acknowledges support from GRENE from MEXT and N.S. acknowledges supports from the JSPS KAKENHI Grant number 26289234 and the Grant-in-Aid for Scientific Research on Innovative Areas "Nano Informatics" (grant number 25106003) from JSPS.


Takao MATSUMOTO (Tokyo, Japan), Yeong-Gi SO, Yuji KOHNO, Hidetaka SAWADA, Yuichi IKUHARA, Naoya SHIBATA
11:00 - 11:15 #6259 - IM07-OP134 Fabrication and characterization of a fine electron biprism on a Si-on-insulator MEMS chip.
Fabrication and characterization of a fine electron biprism on a Si-on-insulator MEMS chip.

For off-axis electron holography, an electrostatic biprism is usually located close to the selected area (SA) aperture plane of the transmission electron microscope (TEM). The application of a voltage to the biprism results in overlap of two parts of an incident electron beam and allows both the amplitude and phase of the electron wavefunction that has passed through a specimen to be recovered. The quality of the reconstructed electron wave depends directly on the information contained in the hologram. An off-axis electron hologram is characterized by its interference fringe spacing, contrast and overlap width. The interference fringe spacing and overlap width are determined by the electron optics of the TEM and by the deflection angle at the biprism. The interference fringe spacing is inversely proportional to the deflection angle, while the overlap width is influenced by the width of the biprism. In order to achieve as narrow a fringe spacing as possible with high fringe contrast, the biprism should be as narrow and stable as possible. Previous attempts to make ultra-narrow biprisms have included glass fibres coated with metal or patterned SiNx with focused ion beam. None of these attempts have provided a reproducible method of making ultra-narrow biprisms with perfect control over their dimensions.

.

Here, we illustrate an approach that can be used to fabricate a biprism that has a rectangular cross-section and is located between two counter electrodes that are at the same height. We pattern the biprism in the top Si layer of a Si-on-insulator (SOI) wafer. The wafer consists of a micron-thick single-crystalline Si layer that is isolated electrically from its substrate and can be left free-standing using an etching process. When combined with microelectromechanical systems (MEMS) processes, structures can be patterned down to nm scale in three dimensions. In this way, the width of the biprism and the distance to the counter-electrodes can be chosen to have dimensions down to ~100 nm. A further advantage of using an SOI wafer to fabricate a biprism is the large Young’s modulus of the single-crystalline Si biprism (170 GPa), when compared with that of a conventional biprism made from glass (~70 GPa). In addition, the two counter-electrodes can be biased independently. A schematic diagram and scanning electron microscopy (SEM) images of a biprism on an electrically-contacted MEMS chip are shown in Fig. 1, alongside a three-dimensional design drawing of a custom-made aperture rod.

.

In order to test its performance, the biprism was mounted close to the SA plane in a Philips CM20 TEM. The electron deflection was measured by recording the shift of a diffraction spot as function of applied voltage. The measured deflections are compared with predicted deflections and with similar measurements made using a conventional biprism on an FEI Titan TEM in Fig. 2. The deflection is a factor two greater for the new rectangular biprism for the same applied voltage. The measured interference fringe spacing, contrast and overlap width achieved using the new biprism are also shown in Fig. 2. Here, the maximum voltage that can be applied is limited by the distance between the biprism and the counter-electrodes, which can be increased in future designs.

.

In order to demonstrate the imaging capabilities of the new biprism, an off-axis electron hologram of a MoS2 flake was recorded in a Philips CM20 TEM. The hologram and the resulting reconstructed amplitude and phase are shown in Fig. 3. In the future, the biprism will be mounted in an image-aberration-corrected FEI Titan TEM, in which the electron optics offers greater flexibility in both normal and Lorentz imaging modes.

.

The authors acknowledge financial support from the European Union under the Seventh Framework Programme under a contract for an Integrated Infrastructure Initiative (Reference 312483 ESTEEM2), the European Research Council for an Advanced Grant (Reference 320832 IMAGINE) and for Starting Grant (Reference 306535 HOLOVIEW) for financial support. We thank David Cooper and Helmut Soltner for valuable discussions and support.


Martial DUCHAMP (Jülich, Germany), Olivier GIRARD, Florian WINKLER, Rolf SPEEN, Rafal E. DUNIN-BORKOWSKI
11:15 - 11:30 #5495 - IM07-OP127 The measurement of off-plane magnetic field through electron vortex beams.
The measurement of off-plane magnetic field through electron vortex beams.

It is well known that a magnetic field produces a phase change proportional to the in plane magnetic field B [1]. Alas the out of plane magnetic field is more elusive. The only measurement that so far seems to produce  any out of plane information is the magnetic dichroism [2] as it actually measures the out of plane magnetization.
Unfortunately magnetic dichroism experiment is still a complicated experiment that requires a considerable control of the condition and of the material; moreover the measures of the magnetization , often with the objective on, is not directly a measure of the magnetic field itself.
However while a plane wave along the optical axis has no significant interaction with a magnetic field along z , vortex beams  with winding number l do feel such field through a Larmor phase effect .
We will demonstrate here that through the use of large vortex beams [3][4][5] we are able, for the first time, to measure the out of plane magnetic field generated by a magnetic pillar of Co [6].
We placed the vortex around the pillar ensuring as much as possible an axial symmetry and observed the phase effect.  The result is in good agreement with the typical magnetization expected for the pillar with an average field at surface of about 2T.
Fig 1 illustrates the A and B field produced by a magnetic pillar. The actual magnetic pillar fabricated by EBID deposition is illustrated in fig 1b. Fig 2 depicts the vortex beam density with L=200 as imaged in its focal plane. Thanks to an interferometric approach we were able to measure the magnetic phase contribution and bind it to the magnetic field in proximity of the sample. The magnetic phase is visible in the inset of fig 2 showing approximate axial symmetry.
The technique has been carried on in Low Mag mode with the main objective  lens off but there are no principle limitation to the application in conventional (S) TEM mode.
Moreover this promises  to be one of the best recognition of the importance of vortex beams in microscopy for material science.
[1] R E. Dunin-Borkowski, M. R. McCartney et al Science 282 (1998) 1868
[2] P. Schattschneider, S. Rubino Nature 441 (2006) 486
[3] J. Verbeeck, H. Tian  P. Schattschneider Nature 467 (2010) 301
[4] B. J. McMorran,  A. Agrawal  et al. Science 331 (2011) 192
[5] V. Grillo et al .  Phys Rev Lett 114, 034801 (2015)
[6] G. Pozzi, C. B. Boothroyd Appl. Phys. Lett. 108, 083108 (2016)


Vincenzo GRILLO (Modena, Italy), Tyler HARVEY, Jordan PIERCE, Federico VENTURI, Roberto BALBONI, Gian Carlo GAZZADI, Stefano FRABBONI, Benjamin MCMORRAN, Robert BOYD, Ebrahim KARIMI
11:30 - 11:45 #6834 - IM07-OP136 Direct comparison of differential phase contrast and off-axis electron holography for the measurement of electric potentials by the examination of reverse biased Si p-n junctions and III-V samples.
Direct comparison of differential phase contrast and off-axis electron holography for the measurement of electric potentials by the examination of reverse biased Si p-n junctions and III-V samples.

In this presentation we will compare differential phase contrast (DPC) [1] and off-axis electron holography [2] for the measurement of electrostatic potentials in semiconductor devices. DPC uses the lateral shifts of a convergent electron beam to determine the field in the sample whereas for electron holography the changes in potential is encoded in interference fringes that are formed using a biprism [1]. To fairly assess the relative sensitivity of the different techniques on the same specimen, a symmetrically doped p-n junction with a dopant concentration of 1 x 1019 cm-3 has been measured as a function of reverse bias applied in situ in the TEM.  Figure 1(a) and (b) shows maps acquired by DPC of the p-n junction with 0V and 4V reverse bias applied. At 0V, it is difficult to see the presence of the junction whereas for a reverse bias of 4 V the space charge region is now visible. Profiles acquired from across the junction for various reverse bias voltages can be seen in Figure 1(c).  Electron holograms were acquired and Figure 1(d) and (e) show reconstructed phase images of the junction at zero bias and 4 V reverse bias. Even though a low magnification has been used to obtain a large field of view at the expense of sensitivity, the junction is clearly visible in both of the phase images. Corresponding electric field profiles that have been calculated from the potential maps are shown in Figure 1(f).  These results show that off-axis electron holography has a significantly better sensitivity than DPC. However  the advantages of using DPC is that a large field of view has been obtained and it is not necessary to examine a region close to vacuum.

These techniques have also been applied to an InGaN/GaN system. Figure 2(a) shows a HAADF STEM image of the specimen. Figure 2(b) shows a potential map and (c) profile acquired by off-axis electron holography with a spatial resolution of 5 nm.  When using DPC, sub-nanometer spatial resolution is expected and maps of the electric field in the InGaN layers can be observed in Figures 2(d) and (e). Here the specimen has been tilted onto and away from a zone axis and a large variation in the measured signal is observed which is visible in Figure 2(f). In this presentation will discuss the effects of diffracted beams on measured DPC signal. We will also discuss the advantages and disadvantages of using DPC and electron holography for the measurement of electrostatic fields in a range of different doped and III/V semiconductor specimens and show improvements that have been applied.

 

Acknowledgements : This work has been funded by the ERC Starting Grant 306365 « Holoview ». The experiments have been performed on the platform nanocharacterisation at Minatec.

 

References

 

[1] N.H. Dekkers, Optik, 30 (1974) 452

[2] A. Tonomura, Reviews of Modern Physics, 59 (1987) 1


Benedikt HAAS (GRENOBLE CEDEX 9), David COOPER, Jean-Luc ROUVIÈRE
11:45 - 12:15 #8311 - IM07-S51 Electron interferometry techniques for strain analysis using a multi-biprism microscope.
Electron interferometry techniques for strain analysis using a multi-biprism microscope.

Electron interferometric techniques have progressed in the last years thanks to the development of multiple biprisms microscopes. Here, we will discuss some recent developments in the field of strain measurement carried out with the I2TEM microscope (In-situ Interferometry Transmission Electron Microscope) installed in Toulouse in 2012. The I2TEM is a Hitachi HF-3300 equipped with one pre-specimen electrostatic biprism, three post-specimen biprisms, an image corrector (CEOS B-COR for correcting off-axial aberrations) and two stages (objective stage and Lorentz stage above the objective lens).

In the dark-field off-axis scheme [1], an electron beam diffracted by an epitaxially grown region is interfered with a beam diffracted by the substrate thanks to a post-specimen biprism (Fig. 1(a)).  Fig. 1(b-d) is an example obtained on a p-MOSFET like transistor with SiGe source/drain. The deformation is recorded as a frequency modulation (FM) in the hologram (Fig. 1(c)) and it can be calculated from the gradient of the reconstructed phase image (Fig 1(d)).

In a recently proposed variant called differential phase contrast dark-field holography (DPC-DFEH) [2], a pre-specimen biprism is used to create two overlapping waves on the sample (Fig. 1(e)). The interference of beams diffracted by slightly distant regions is acquired in a defocused plane. The deformation is recorded as a phase modulation (PM) in the hologram (Fig. 1(f)) and the DPC phase is directly proportional to the deformation (Fig. 1(g)).

Another option is the 4-wave dark-field setup where two biprisms oriented perpendicularly are used to interfere three reference waves and one object wave (Fig. 1(h-j)). The holographic fringes are modulated in amplitude (AM) and each amplitude contour corresponds to a given displacement of the lattice planes [3].  It can provide live information if a sufficient fringe contrast is achieved.

In all cases, strain measurement requires a reference wave diffracted by a region of known lattice parameter (usually the substrate). One solution is the “tilted reference wave” (TRW) where a pre-specimen biprism and the condenser system are used to create an object-independent reference wave with an adjustable tilt angle [4]. Fig. 2(a,b) is an example acquired in the vacuum and Fig. 2(c,d) shows the dark-field configuration for strain measurement.

Finally, a pre-specimen biprism can also be useful for electron diffraction techniques. For instance, one can create two parallel half cones on the specimen (splitting convergent beam electron diffraction, SCBED) with a controllable distance (Fig. 3(a)) [5]. Each spot in the diffraction pattern contains two lobes related to the regions crossed by the two probes. Fig. 3(b) shows an example of SCBED pattern series where the left and right lobes are related to unstrained and increasingly strained regions respectively.

[1]  M Hÿtch et al, Nature 453 (2008), 1086–1089.

[2]  T Denneulin et al, Ultramicroscopy  160 (2016), 98–109.

[3]  T Denneulin and M Hÿtch, J. Phys. D: Appl. Phys. 49 (2016), 244003.

[4]  F Röder et al, Ultramicroscopy 161 (2016), 23–40.

[5]  F Houdellier et al, Ultramicroscopy 159, Part 1 (2015), 59–66.

Acknowledgments

This work was funded through the European Metrology Research Programme (EMRP) Project IND54 Nanostrain. The EMRP is jointly funded by the EMRP participating countries within EURAMET and the European Union. This work has been supported by the French National Research Agency under the "Investissement d'Avenir" program reference No. ANR-10-EQPX-38-01. The authors acknowledge the "Conseil Regional Midi-Pyrénées" and the European FEDER for financial support within the CPER program.


Thibaud DENNEULIN (TOULOUSE CEDEX), Falk RÖDER, Florent HOUDELLIER, Christophe GATEL, Etienne SNOECK, Martin HŸTCH
Invited
12:15 - 12:30 #5789 - IM07-OP128 Electron holography by means of tilted reference waves.
Electron holography by means of tilted reference waves.

Off-Axis Electron Holography permits the direct reconstruction of amplitude and phase of electron waves elastically scattered by an object (see, e.g., [1]). The technique employs the Möllenstedt biprism to mutually incline an object modulated wave and a plane reference wave to form an interference pattern at the detector plane. Limited coherence of the electron beam in presence of aberrations attenuates high spatial frequencies of the object exit wave spectrum, which is illustrated by the sideband envelope function for a non-corrected TEM in Fig. 1a.

In this work, we explore an extension of the conventional setup given by deliberately tilting the reference wave independent from the object wave. This allows the transfer of spatial frequencies beyond the conventional sideband information limit in Fig. 1a as predicted by a generalized transfer theory for Off-Axis Electron Holography [2]. This is because a reference wave tilted by q0 compensates the aberration impact on the spatial frequency q0 of the object wave spectrum. The resulting transfer envelope for a tilt of q0x = -10/nm perpendicular to the post-specimen biprism is shown in Fig. 1b, where the contrast maximum of the total envelope (TCC) is located at q0x. Thus, an off-axis hologram series with varying reference wave tilt allows in principle a linear synthesis of an effective coherent aperture with a radius reaching out beyond the conventional information limit. Furthermore, an object-independent measurement of aberrations as well as dark-field electron holography can be realized using this setup.

The experimental realization of an arbitrarily tilted reference wave is challenging and could be realized for the first time at the Hitachi HF3300C I2TEM at CEMES Toulouse for one direction [3]. We used an additional biprism placed in the illumination system. Three condenser lenses were adjusted to provide a demagnified image of the condenser biprism at the sample plane under parallel illumination (Fig. 2). The pre-specimen deflectors were adapted to maintain the incident wave vector of the object wave and to realize a tilt of the reference wave as a function of the condenser biprism voltage. Optimal condenser lens settings were found by means of paraxial ray tracing (Fig. 3) finally producing a mutual tilt of up to 20/nm at the object plane. We verified the kink-like phase modulation of the incident beam by means of holographic measurements. Contrast transfer theory including condenser aberrations and biprism instabilities was applied to explain detailed fringe contrast measurements. Finally, we have experimentally shown that dark-field holography [4] can be conducted with an object-independent reference.

 

[1]  H Lichte et al, Rep. Prog. Phys. 71 (2008) 016102

[2]  F Röder et al, Ultramic. 152 (2015) 63-74

[3]  F Röder et al, Ultramic. 161 (2016) 23–40

[4]  MJ Hÿtch et al, Nature 453 (2008), 1086–1089

 

Acknowledgments

We thank the Graduate Academy of the TU Dresden for the financial support. The research leading to these results has received funding from the European Union Seventh Framework Programme under Grant Agreement 312483-ESTEEM2 (Integrated Infrastructure Initiative-I3).


Falk RÖDER (Dresden, Germany), Axel LUBK, Florent HOUDELLIER, Thibaud DENNEULIN, Etienne SNOECK, Martin HŸTCH
Salle Tête d'or 1&2

"Wednesday 31 August"

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IM10-I
10:15 - 12:30

IM10: Correlative microscopy
SLOT I

Chairpersons: Yannick SCHWAB (Chairperson, Heidelberg, Germany), Paul VERKADE (Chairperson, Bristol, United Kingdom)
10:15 - 10:45 #8369 - IM10-S59 Correlative immuno Light Electron Microscopy (CLEM) of subcellular compartments.
Correlative immuno Light Electron Microscopy (CLEM) of subcellular compartments.

Correlative light and electron microscopy (CLEM) methods integrate light and electron microscopy on a single sample, literally bridging the gap between these two microscopy techniques. Most methods use fluorescent microscopy of thin or semi-thin sections to define a region-of-interest, which then is traced back in the EM to provide subcellular context information (e.g. membrane organization, non-labeled surroundings of the fluorescent structure). The most powerful application of CLEM is correlative live cell imaging-EM, by which dynamic information is inferred to structures seen in static EM pictures. By merging the strengths of the two techniques a novel and integrated type of image is created that combines parameters that cannot - or not easily - be obtained when using separate images of related events. However, because imaging requirements are intrinsically different between light and electron microscopy, creating conditions that are ideal for both modalities is a challenging process. Moreover, correlating fluorescent labeling to the cellular architecture seen in the EM is not always straightforward. The most pressing challenges in CLEM are currently therefore 1. development of sample preparation methods that are appropriate for both LM and EM imaging. 2. development of bi-modal probes that are visible in both LM and EM and 3. development of software that allows for rapid and accurate correlation of LM and EM images. 

The focus of our research is to develop new probes and CLEM pipelines that allow us to efficiently and with high accuracy define the three-dimensional (3D) ultrastructural context of fluorescently-tagged proteins previously localized in fixed or living cells. We apply our technologies to study the cellular pathways and mechanisms that control the cell’s digestive system – i.e. the endo-lysosomal system - in health and disease conditions. The main CLEM technology that we use in the lab is based on the use of immunogold labeling of ultrathin cryosections (the Tokuyasu technique) [1]. Most CLEM approaches, however, are restricted in their EM approach by the lack of 3D structural information. To overcome this limitation, we apply Focused Ion Beam Scanning Electron Microscopy (FIB-SEM) as 3D-EM approach in a live cell-CLEM set up. To visualize endo-lysosomes in live cells we combine fluorescent tagged endo-lysosomal proteins (such as LAMP1-mGFP) with endocytic tracers (such as fluorescently labeled dextran). This approach enables live-cell tracking of specific endo-lysosomal compartments, after which the samples are fixed, stained and resin-embedded for FIB-SEM imaging. Figure 1 presents an example of Dextran-Alexa646 and/or LAMP1-mGFP labeled endo-lysosomal compartments in live cells (A) and in 3D-EM (D), providing the cellular context at ultrastructural resolution. In my presentation I will show various examples of both immunoEM and FIB.SEM-based CLEM approaches, which are designed to optimally image individual, membrane-bounded compartments. 


Judith KLUMPERMAN (Utrecht, The Netherlands)
Invited
10:45 - 11:00 #6922 - IM10-OP174 3D mapping of subcellular structures with super-resolution array tomography.
3D mapping of subcellular structures with super-resolution array tomography.

The combination of fluorescence light microscopy (FLM) and electron microscopy (EM) makes it possible to put molecular identity in its full ultrastructural context. With array tomography (AT) long ribbons of serial ultrathin sections are labelled via immunohistochemistry (IHC). After FLM imaging the same sections are processed for scanning electron microscopy (SEM) and re-analyzed. The resulting images are correlated and superimposed. Due to the serial nature of this approach it is possible to obtain large volumes of correlated multi-channel light and electron microscopic data. One drawback of this method is the large discrepancy of resolution between light and electron microscopy. To alleviate this we advanced AT for two super-resolution light microscopy techniques, Structured Illumination Microscopy (SIM) and direct Stochastic Optical Reconstruction Microscopy (dSTORM). We also devised a method for easy, precise, and unbiased correlation of EM images and super-resolution imaging data using endogenous cellular landmarks and freely available image processing software. Together, these advances make it possible to map even small subcellular structures with high precision and confidence. We applied our super-resolution AT approach in C. elegans to address an important problem in connectomics research: the mapping of gap junctions at connectomes.


Sebastian MARKERT (Würzburg, Germany), Sebastian BRITZ, Sven PROPPERT, Marietta LANG, Daniel WITVLIET, Ben MULCAHY, Markus SAUER, Mei ZHEN, Jean-Louis BESSEREAU, Christian STIGLOHER
11:00 - 11:15 #6596 - IM10-OP171 High-resolution identification of immuno-labelling nanoparticles on tissue using X-ray detection.
High-resolution identification of immuno-labelling nanoparticles on tissue using X-ray detection.

Cellular structure can be imaged at nanometer resolution using electron microscopy, but the biological molecules remain invisible in grayscale electron micrographs. With Correlative Light and Electron Microscopy (CLEM)[1], fluorescence recorded on a separate light microscope can be used to identify molecules in colour, but the resolution gap with electron microscope precludes accurate localization. The use of super-resolution fluorescence microscopy techniques combined with CLEM[2,3] holds great promise but is still one order of magnitude off in resolution compared to EM. In addition, accurate registration of the separate images may be challenging and correlation may require expert procedures to maintain, e.g., protein photo-switching under EM preparation conditions. Thus, while CLEM adds information represented in the colors of visible light, molecular identification and localization at the resolution of the electron microscope is still hampered. Therefore, we are exploring novel approaches to achieve color-EM using the electron beam to add information about the specimen to the electron micrographs.

Detection of electron-beam excited luminescence has been explored in the past. Cross-sections for visible luminescence (also called cathodoluminescence) are, however, small and most biological fluorescent labels are destroyed before sufficient signal has been collected to allow high-resolution localization [4]. Phosphorescent nanoparticles are considered as non-bleaching alternative, but particle sizes are not yet well-defined and bio-functionalization has in most cases still to be pursued[5]. 

Here, we explore detection of X-ray fluorescence to identify nanoparticle labels[6] at EM resolution in colour on tissue. We use Au and CdSe colloidal quantum dots, immuno-targeted to guanine quadruplexes, resp. insulin, as molecular labels in large-scale electron microscopy of pancreatic tissue. Energy dispersive detection of X-ray emission (EDX) during electron irradiation allows discrimination of both nanoparticles based on their elemental (Au vs Cd) composition. We will present electron microscopy images overlaid with false colour elemental maps displaying single nanoparticles. Separate resolution tests have shown that individual Au particles down to 3 nm in size can be detected using EDX, highlighting the potential for coloured identification of materials in biological electron microscopy, revealing both compositional and ultrastructural information at nanometer-scale resolution. 

[1] P. de Boer, J. P. Hoogenboom, B. N. G. Giepmans, Nature Methods 12, 503 (2015)

[2] Kopek, B.G., et al., Proc. Natl. Acad. Sci. U. S. A. 109, 6136 (2012)

[3] Johnson, E. et al., Scientific Reports 5 (2015)

[4] Niitsuma, J., Oikawa, H., Kimura, E., Ushiki, T. & Sekiguchi, T., J. Electron Microscopy 54, 325 (2005).

[5] Glenn, D.R. et al., Scientific Reports 2 (2012)

[6] A. Loukanov, N. Kamasawa, R. Danev, R. Shigemoto, K. Nagayama, Ultramicroscopy 110,366 (2010)


Marijke SCOTUZZI, Jeroen KUIPERS (Groningen, The Netherlands), Dasha I. WENSVEEN, Pascal DE BOER, Cornelis W. HAGEN, Ben N G GIEPMANS, Jacob P. HOOGENBOOM
11:15 - 11:30 #6676 - IM10-OP172 Role of Lamin B1 in structuring the cell nucleus in eukaryotic cells.
Role of Lamin B1 in structuring the cell nucleus in eukaryotic cells.

Lamin B1 (Lmnb1) is a major component of the nuclear lamina and together with other lamins (lamin A/C) plays a key role in the structure and function of the nucleus. Mutations in lamins and lamin-associated proteins have been indeed shown to cause various human diseases. There are indications that mammalian lamins A and B and drosophila Lamin Dm0 are involved in nuclear envelope formation and nuclear morphology (Prüfert et al. J Cell Sci 117, 6105). To explore the specific role of Lamin B1 in defining nuclear morphology we applied electron microscopy, electron tomography and correlative light electron microscopy (CLEM) on different cell types in which murine lamin B1 (Lmnb1) was silenced or human lamin B1 (LMNB1) was over-expressed.
To investigate how Lmnb1 deficiency affects nuclei of post-mitotic neurons, we analyzed the nuclear morphology of primary mouse cortical neurons derived from Lmnb1-null (Lmnb1Δ/Δ) embryos (Giacomini et al. Mol Biol Cell 27, 35). Nuclei of cultured Lmnb1Δ/Δ neurons were smaller and rounder than those of Lmnb1+/+ embryos (the area of Lmnb1Δ/Δ nuclei was 43% less than that of Lmnb1+/+). Moreover the Lmnb1Δ/Δ nuclei presented a rounder shape than those of Lmnb1+/+, as confirmed by increased circularity values (mean circularity was 0.62±0.16 n=28 and 0.9±0.87 n=39 for respectively Lmnb1+/+ and Lmnb1Δ/Δ nuclei). Taken together, these results indicate that optimal Lmnb1 levels are essential to maintain neuronal nuclear size and shape. Lmnb1 deficiency also affected the distribution and composition of nuclear pore complexes (NPCs) in mouse cortical neurons. Indeed in Lmnb1Δ/Δ neurons, the NPCs were distributed irregularly, with some regions of the nuclear envelope hosting groups of NPCs located close to each other and other areas devoid of NPCs (Fig.1A-C). Electron tomography performed on serial semi-thin sections showed that in Lmnb1Δ/Δ neurons the NPCs are distributed in parallel, closely packed rows (Fig.1D).
The effect of the LMNB1 over-expression on nuclear morphology was assessed in transfected HEK 293 and HeLa cells. HEK 293 cells transfected with a bicistronic plasmid containing LMNB1 and EGFP downstream of an IRES sequence were sorted by EGFP expression using fluorescence-activated cell sorting (FACS) and high pressure frozen and freeze substituted to maintain structural integrity as much as possible. To increase contrast at the nuclear membranes we set up a freeze substitution recipe with a pre-incubation step at -90°C in 2% hydrated acetone containing small percent of tannic acid and glutaraldehyde. The cell nuclei of HEK 293 over-expressing LMNB1 were lobulated, with highly folded nuclear membranes often associated with multi-membrane stacks and intra-nuclear membranes (Fig.2A). As in primary cortical neurons lacking Lmnb1, we observed clusters of NPCs at the nuclear membrane (Fig.2B). Immunolabeling performed on cryo-sections revealed the presence of LMNB1 on the membrane stacks associated with the nuclear envelope (Fig.2C). This result supports the idea that these membrane stacks are effectively multi-membrane-layered nuclear membranes. To better understand the fine localization of Lmnb1 we performed correlative light electron microscopy (CLEM) experiments on HEK 293 and HeLa cells overexpressing LMNB1 in fusion with EGFP and tdTomato downstream of an IRES sequence. The cells, grown on sapphire disks carbon coated with a finder grid pattern, were live imaged at the confocal laser scanning microscope and then high pressure frozen and freeze substituted (Fig.3). As for HEK 293, the cell nuclei of HeLa cells over-expressing LMNB1 were lobulated with highly folded nuclear membranes. The HeLa nuclei differed from HEK 293 nuclei for the absence of membrane stacks associated to the nuclear membranes and for the presence of peculiar morphologies (Fig.3A). Indeed our CLEM approach revealed the presence of highly folded intra-nuclear membranes delimiting large cytoplasmic regions (Fig.3B,D). This approach also revealed the presence of nuclei that branched apically in thin and long nuclear rods delimited by conventional nuclear membranes (Fig.3B,C). Altogether, our results indicate that proper levels of Lamin B1 are required to maintain structural integrity and morphology of the nuclear envelope.
Acknowledgement
We thank Roberta Ruffilli and all the EM Lab members for their support. Special thanks to Prof. Liberato Manna for supporting this research.


Roberto MAROTTA (Genoa, Italy), Tiziano CATELANI, Mattia PESCE, Caterina GIACOMINI, Sameehan MAHAJANI, Gasparini LAURA
11:30 - 12:00 #8741 - IM10-S61 An integrated structural cell biology to unravel the vesicle and membrane coat formation mechanism at the inner nuclear envelope.
An integrated structural cell biology to unravel the vesicle and membrane coat formation mechanism at the inner nuclear envelope.

Our group uses electron cryo microscopy (cryoEM) / tomography (cryoET) and combines these with complementary techniques to understand biological processes mechanistically. The power of such an integrated structural biology approach to cell biology at the macromolecular level will be exemplified along the group’s analyses of crucial steps in the molecular interactions between viruses and their host cells . The main emphasis will be on understanding mechanisms of membrane modulation in vesicle formation at the inner nuclear envelope in cargo egress from the nucleus [1,2].

Although nucleo-cytoplasmic transport is typically mediated through nuclear pore complexes, herpesvirus capsids exit the nucleus via a unique vesicular pathway. Vesicular nucleo-cytoplasmic transport might also be a general cellular mechanism for translocation of large cargoes across the nuclear envelope. Cargo is recruited, enveloped at the inner nuclear membrane (INM), and delivered by membrane fusion at the outer nuclear membrane. To understand the structural underpinning for this trafficking, we investigated nuclear egress of progeny herpesvirus capsids where capsid envelopment is mediated by two viral proteins (pUL31 and pUL34), forming the nuclear egress complex (NEC). Using a multi-modal imaging approach, we visualized the NEC in situ forming coated vesicles of defined size. Cellular electron cryo-tomography revealed a protein layer showing two distinct hexagonal lattices at its membrane-proximal and membrane- distant faces, respectively. NEC coat architecture was determined by combining this information with integrative modeling using small-angle X-ray scattering data. The molecular arrangement of the NEC establishes the basic mechanism for budding and scission of tailored vesicles at the INM. We further solved the crystal structure of the pseudorabies virus NEC. Fitting of the NEC crystal structure into the cryoEM-derived hexagonal lattice found in situ, provided details on the molecular basis of NEC coat formation and inner nuclear membrane remodeling. Altogether, this multimodal imaging study exemplified the power of an integrated structural cell biology approach to reveal novel mechanistic insights by combining in-situ data with information on the isolated macromolecules mediating the respective biological process of interest.

References:

[1] Hagen, C., Dent, K.C., Zeev-Ben-Mordehai, T., Grange, M., Bosse, J.B., Whittle, C., Klupp, B.G., Siebert, C.A., Vasishtan, D., Bäuerlein, F.J.B. Cheleski, J., Werner, S., Guttmann, P., Rehbein, S., Henzler, K., Demmerle, J., Adler, B., Koszinowski, U., Schermelleh, L., Schneider, G., Enquist, L.W., Plitzko, J.P., Mettenleiter, T.C., Grünewald, K. (2015) Structural Basis of Vesicle Formation at the Inner Nuclear Membrane. Cell 163: 1692–1701.

[2] Zeev-Ben-Mordehai, T., Weberruß, M., Lorenz, M., Cheleski, J., Hellberg, T., Whittle, C., El Omari, K., Vasishtan, D., Dent, K.C., Harlos, K., Franzke, K., Hagen, C., Klupp, B.G., Antonin, W., Mettenleiter, T.C., Grünewald, K. (2015) Crystal structure of the herpesvirus nuclear egress complex provides insights into inner nuclear membrane remodeling. Cell Reports 13: 2645–2652.


Christoph HAGEN, Tzviya ZEEV-BEN-MORDEHAI, Kyle DENT, Michael GRANGE, Jens B. BOSSE, Daven VASISHTAN, C. Alistair SIEBERT, Rainer KAUFMANN, Juliana CELESKI, Cathy WHITTLE, Lothar SCHERMELLEH, Barbara KLUPP, Gerd SCHNEIDER, Wolfram ANTONIN, Lynn ENQUIST, Thomas C METTENLEITER, Kay GRÜNEWALD (Oxford, United Kingdom)
Invited
12:00 - 12:15 #6031 - IM10-OP167 Mycobacterial protein weaponry studied by cryo-correlative microscopy.
Mycobacterial protein weaponry studied by cryo-correlative microscopy.

In correlative light and electron microscopy, the discerning power of fluorescence microscopy (FM) is combined with the ultra-high resolution of electron microscopy (EM). We fluorescently label protein complexes in cells, with the purpose of facilitating their identification in transmission electron tomograms. Our imaging strategy is to perform cryogenic selected volume tomography, continuously keeping the specimen in a vitreous state. To this end, we are developing a cryogenic workflow in collaboration with FEI, consisting of three microscopes: CorrSight light microscope (LM), Scios Dualbeam scanning electron microscope (SEM) with a focused ion beam (FIB) and Tecnai Arctica cryo–transmission electron microscope (TEM). The focus of my presentation is on the integration of the CorrSight light microscope into the workflow (1). This translates to performing cryogenic light microscopy and correlating the images with EM for guided ion beam milling and tomography (2).

The data we collected from cryogenic fluorescence microscopy of mammalian and bacterial cells on TEM grids shows great promise for complementing EM (Fig. 1). This is substantiated by alignment of LM and SEM images utilizing FEI MAPS software, allowing for fluorescence based navigation during SEM imaging (Fig. 2). My future efforts will focus on improving localization precision and correlation accuracy, to guide FIB-milling of sub-cellular structures in the SEM. FIB-milling is used to fabricate thin lamellae in cells, making them suitable for cryo-TEM. Our results indicate that tomograms can be recorded from lamellae using a 200kV cryo-TEM, but vitrification of the specimen is essential. The ultimate goal of our workflow is to obtain structural insight of the Type 7 Secretion System (T7SS), formed by the ESX-1 machinery. To this end, we will perform tomography of mycobacterial membranes inside professional antigen-presenting cells. The T7SS is an important part of the mycobacterial protein weaponry, as it mediates virulence and phagosomal escape (4, 5).

 

 

References

1. Arnold, J., J. Mahamid, A. de Marco, J.-J. Fernandez, T. Laugks, et al. 2016. Site-Specific Cryo-focused Ion Beam Sample Preparation Guided by 3D Correlative Microscopy. Biophysical Journal. 110: 860.

2. Mahamid, J., S. Pfeffer, M. Schaffer, E. Villa, R. Danev, et al. 2016. Visualizing the molecular sociology at the HeLa cell nuclear periphery. Science. 351: 969.

3. K.V. Korotkov, and W. Bitter. 2014. Take five — Type VII secretion systems of Mycobacteria. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research. 1843: 1707.

4. Smith, S. 2004. Individual RD1-region genes are required for export of ESAT-6/CFP-10 and for virulence of Mycobacterium tuberculosis. Molecular Microbiology. 51: 359.

5. van der Wel, N., D. Hava, D. Houben, D. Fluitsma, M. van Zon, et al. 2007. M. tuberculosis and M. leprae Translocate from the Phagolysosome to the Cytosol in Myeloid Cells. Cell. 129: 1287.


Kristof NOTELAERS (Maastricht, The Netherlands), Casper BERGER, Nino IAKOBACHVILI, Delei CHEN, Axel SIROY, Hirotoshi FURUSHO, Raimond RAVELLI, Carmen LÓPEZ-IGLESIAS, Peter PETERS
12:15 - 12:30 #6998 - IM10-OP177 Imaging of Vitrified Biological Specimens by Confocal Cryo Fluorescence Microscopy and Cryo FIB/SEM Tomography.
Imaging of Vitrified Biological Specimens by Confocal Cryo Fluorescence Microscopy and Cryo FIB/SEM Tomography.

The investigation of vitrified biological specimens (i.e. samples that are plunge or high pressure frozen) enables the visualization of cellular ultrastructure in a near native fully hydrated state, unadulterated by harmful prepara­tion methods. Here, we focus on two recent cryo imaging modalities and discuss their impact on cryo correlative workflows. First, we present confocal cryo fluorescence microscopy, utilizing a novel confocal detector scheme with improved signal to noise ratio (SNR) and resolution. Second, we show volume imaging of multicellular specimens by cryo focused ion beam scanning electron microscopy (FIB/SEM).

Confocal laser scanning microscopes (LSM) are renowned for their optical sectioning capability, a feature enabled by utilizing a pinhole that rejects out of focus light. Closing the pinhole improves lateral resolution, but also causes less light to reach the detector leading to reduced signal to noise ratios. In cryo fluorescence microscopy, the situation is aggravated by the fact that current­ly no immersion optics are available and consequently only numerical apertures below NA 1 are possible. Here we combined Airyscan, a novel detector module (available for ZEISS LSM 780, 800 and 880) together with a cryo correlative stage (Linkam CMS 196) for cryo fluorescent imaging of vitrified cells prepared on electron microscopy grids (Figure 1a). The Airyscan detection module allows the spatially resolved detection of fluorescence light otherwise rejected by the pinhole in a standard confocal system. We show that under cryo conditions even without immersion optics a significant increase in resolution and SNR can be obtained with Airyscan compared to standard confocal images (Figure 1 b&c).

In FIB/SEM tomography three-dimensional volumetric data from biological specimens is obtained by sequentially removing material with the ion beam and imaging the milled block faces by scanning with the electron beam. Only recently, it has been shown that this imaging method can be applied also to frozen hydrated specimens [1]. Cryo FIB/SEM tomography allows the mapping of large multicellular specimens in the near native state and is particularly suited to analyze samples that require remaining hydrated. We demonstrate this approach by imaging the cryo immobilized specimens (e.g. mouse optic nerve) (Figure 2).

Both methods by themselves promise significant advantages for biomedical research by being able to investigate biological specimens in the near native fully hydrated state. Yet correlating both imaging modalities, LSM and FIB/SEM of vitrified samples, has the potential to provide even deeper insights into biological context. In contrast to correlative workflows using resin embedded samples, cryo imaging workflows do not have to find the optimal balance between preserving cellular ultrastructure and maintaining the functional integrity of fluorophores. Moreover, major mechanisms leading to irreversible bleaching of fluorescent molecules are suppressed at cryo temperatures [2]. The correlation between cryo light and electron microscopy data will greatly benefit from an increase in resolution in fluorescence imaging. Cryo Airyscan is a first step in that direction and can deliver three-dimensional optical sectioning data that can be used to reliably target cellular structures in a FIB/SEM microscope, before the structural context is explored by cryo FIB/SEM tomography.

References:

(1) Schertel A et al., “Cryo FIB SEM: volume imaging of cellular ultrastructure in native frozen specimens.” J Struct Biol. 2013 Nov; 184(2):355 60. doi: 10.1016/j.jsb.2013.09.024.
(2) Kaufmann R, Hagen C, Grunewald K. Fluorescence cryo microscopy: current challenges and prospects. Current opinion in chemical biology. 2014; 20:86 91. DOI: 10.1016/j.cbpa.2014.05.007


Andreas SCHERTEL (Oberkochen, Germany), Robert KIRMSE, Eric HUMMEL, Volker DÖRING, Michael SCHWERTNER, Ralf WOLLESCHENSKY, Wiebke MÖBIUS
Salon Tête d'Or

"Wednesday 31 August"

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LS9-I
10:15 - 12:30

LS9: Societal challenges and environment
SLOT I

Chairpersons: Kesara ANAMTHAWAT-JONSSON (Chairperson, Reykjavik, Iceland), Béatrice SATIAT-JEUNEMAITRE (Chairperson, GIF SUR YVETTE CEDEX, France)
10:15 - 10:45 #8359 - LS09-S28 imaging via FIB-SEM tomography at nanoscale for tissue engineering applications.
imaging via FIB-SEM tomography at nanoscale for tissue engineering applications.

The use of electrospun nanofibers for guided bone regeneration or bone scaffolds are becoming increasingly important in tissue engineering for next-generation healthcare. However, understanding the interaction between the nanofiber scaffolds that organize into complex 3D organizations and cells for optimized growth is a recurrent problem yet to be overcome.

In this study we exploit high resolution 3D imaging using scanning electron microscopy (SEM) and focussed ion beam (FIB) microscopy to evaluate cryo-prepared electrospun nanofiber scaffolds. Specifically, a biodegradable electrospun nanofiber membrane fabricated from poly(D,L-lactide-co-glycolide) (PLGA) is used for guided bone regeneration for orthopaedic applications. The electrospun scaffolds are produced with randomly oriented and aligned nanofibers, creating a range of void sizes, which are crucial for controlling cells penetration into electrospun scaffolds. The secondary electron imaging in Figure 1 and 2 demonstrates osteoblasts spreading over the random and aligned nanofiber mat surface respectively and within the fibrous membrane after 4 days in culture. Osteoblasts tend to growth both along the principal fiber axis and migrate in all directions towards neighboring fibrous filopodia, localized at the edges of osteoblasts, help the sheets of cells to align in the nanofiber direction and participate in cell-cell adhesion. It is presumed that these filopodia–like–protrusions are responsible for osteoblast elongation and migration into the 3D network of the electrospun nanofiber mat.

The interaction between osteoblasts and osteoblast-derived mineralized nodule formation on the nanofiber membrane is visualized using 3D FIB-SEM imaging based on a ‘slice-and-view’ approach. The 3D imaging highlights a coherent interface at small length scales between osteoblasts and nanofiber surfaces through connections between osteoblast, their filopodia and the nanofibers that promote cell growth. These imaging results are supported by biochemical approaches that indicate the formation of proteins responsible for focal adhesion in osteoblasts.1 The presented 3D tomography therefore presents a new approach in high resolution visualization the cell growth on electrospun nanofibers, and potentially other biomaterials, that will develop and design new biomaterials for a range of clinically important applications including orthopaedics of this work.

Acknowledgments

The study was conducted within the funding from SONATA 8 project granted by National Science Centre in Poland, No 2014/15/D/ST6/02598 

References

1.   U. Stachewicz, T. Qiao, S.C.F. Rawlinson, F.V. Almeida, W.-Q Li, M. Cattell, A.H. Barber,  "3D Imaging of Cell Interactions with Electrospun PLGA Nanofiber Membranes for Bone Regeneration",  Acta Biomater, 27 (2015), 88-100.


Stachewicz URSZULA (Krakow, Poland), Piotr SZEWCZYK, Adam KRUK, Asa BARBER, Aleksandra CZYRSKA-FILEMONOWICZ
Invited
10:45 - 11:00 #6378 - LS09-OP035 Life cycle of carbon nanotubes in the body.
Life cycle of carbon nanotubes in the body.

The human body is increasingly exposed to nanoscale materials that are widely developed for industrial use or for biomedical applications. Moreover, these engineered nano-objects are not the only worrying source of exposure for humans, since anthropogenic nanomaterials released in the environments also constitute a growing threat to public health. Therefore, addressing the risks associated to nanomaterials is a complex and sensitive societal issue which requires identifying all the nano-objects to which humans are exposed and understanding their lifecycle in the organism.  Here, we reveal for the first time an entry pathway for multi-wall carbon nanotubes (MWCNTs) found in air pollution to the airways of Parisian children [1]. Given the key role of macrophages in the process of foreign substances, we have also exploited multidisciplinary know-how in materials and life sciences to unravel the way taken by these cells to degrade MWCNTs [2].

 

We used high-resolution transmission electron microscopy and energy dispersive X-ray spectroscopy to show the presence of MWCNTs in broncho-alveolar lavage-fluids (fig 1a) and inside lung cells (fig 1b) of asthmatic children. These CNTs are present in all examined samples (n = 64) and they are similar to those found in dusts and vehicle exhausts (fig 1c) collected in Paris and other parts of the world (USA, India…). These results strongly suggest that humans are routinely exposed to MWCNTs and demonstrate that advanced atomic-scale characterizations are essential to identify ultrafine particles in the environment or in the organism [1].

 

Like most nanomaterials, the “journey” of MWCNTs in the organism mainly ends in macrophages of lung after inhalation, or of liver and spleen after intravenous injection. In order to consider the reciprocity of the interactions between MWCNTs and macrophages, we have simultaneously examined the influences of intracellular environment on the atomic structure of nanomaterials and the biologic response of the cells to MWCNTs. Gene and protein expression profiles of macrophages exposed to MWCNTs allowed identifying the formation of reactive oxygen species (ROS) as a non-ambiguous causal process for triggering intracellular degradation of MWCNTs. Consistent with cellular approach, we could monitor with unprecedented nanoscale resolution the ROS-induced damages in MWCNTs using transmission electron microscopy in liquid (fig 2). Remarkably, we demonstrate that this in situ imaging of MWCNT degradation recapitulates the long term ROS-induced aging of MWCNT in macrophages and reveals the structural mechanisms of MWCNT transformation over time. More generally, such dynamical observations of nanomaterials under oxidative stress is a step forward for studying their behavior and reactivity in biological environment at the relevant scale. These mechanistic insights on the biological responses to nanomaterial exposure and the resulting nanomaterial transformations are of primary importance for both material scientists interested in optimizing the reactivity of nanostructures in biological environment and biologists anxious to evaluate the effects and potential risk of nanomaterials for the organism [2].

 

References:

[1] Jelena Kolosnjaj-Tabi et al, Anthropogenic Carbon Nanotubes Found in the Airways of Parisian Children, EBioMedicine 2 (2015), p. 3988.

[2] Dan Elgrabli et al. Carbon Nanotube Degradation in Macrophages: Live Nanoscale Monitoring and Understanding of Biological Pathway, ACS Nano 9 (2015), p. 10113.


Damien ALLOYEAU (LMPQ, Paris Diderot), Walid DARCHRAOUI, Dan ELGRABLI, Jelena KOLOSNJAJ-TABI2, Alberto BIANCO, Dominique BEGIN, Sylvie BEGIN, Christian RICOLLEAU, Fathi MOUSSA, Florence GAZEAU
11:00 - 11:15 #5826 - LS09-OP033 Application of FIB-SEM tomography for analyses of ceramic coatings deposited on titanium alloy and material-cell interface.
Application of FIB-SEM tomography for analyses of ceramic coatings deposited on titanium alloy and material-cell interface.

Biomedical engineering is a fast developing field of medicine, employing biomaterials to replace or augment damaged and diseased tissues. Growing population with osteoarthritis problems and extending life span contributes to increased demand for effective solutions in arthroplasty. Titanium alloys are the materials of the choice in case of elements of artificial joints. They are implanted directly into the bones. Long lasting performance of those implants depends on their integration with surrounding tissues. Surface modification of titanium alloys is performed to improve osseointegration. It can be achieved by deposition of porous, ceramic coatings. Such a structure facilitates bone cells ingrowth and stable anchorage of the implant in the bone. Understanding of the reactions at the interface between materials and cells will help to optimize the design of new implants with improved performance.

In current work, a titanium alloy (Ti6Al7Nb) was used as a substrate in micro-arc oxidation (MAO) process. As the effect of this electrochemical reaction the protective and bioactive coating composed of titanium dioxides, calcium titanate and calcium phosphates was formed on the metallic sample. The obtained complex ceramic, porous layer was investigated by SEM and SEM-EDS (Merlin Gemini II, Zeiss) and FIB-SEM tomography (NEON CrossBeam 40EsB, Zeiss) to analyze microstructure, chemical composition and internal structure, including pores network.

In vitro cell culture is a standard method to evaluate biocompatibility of new or modified materials. Thus, osteoblast-like cells line MG-63 were cultured for three days at the surface of coated titanium alloy samples. Subsequently cells attached to the ceramic coating were fixed, dehydrated and gold sputtered for electron microscopy investigations. Cells shape and distribution at rough and porous structure of the coating containing hydroxyapatite (HA) in the outer layer was investigated based on plain view SEM images (Fig. 1a). Area prepared for tomography by FIB milling of surrounding material is presented at Fig. 1b (marked by red square). FIB-SEM tomography enables to see both material surface and cells at nanometer scale (Fig. 1c). The 3D reconstruction allows for visualization and investigations of the interface between coated material and cell in the analyzed sample volume.

Acknowledgement

The study was conducted within the OPTYMED project granted by National Science Centre of Poland (no 2013/08/M/ST8/00332).


Joanna KARBOWNICZEK (Krakow, Poland), Adam GRUSZCZYŃSKI, Adam KRUK, Aleksandra CZYRSKA-FILEMONOWICZ
11:15 - 11:45 #8435 - LS09-S29 Metal Contaminated Environments And Interactions With Biota.
Metal Contaminated Environments And Interactions With Biota.

Contamination of the environment with metals has dramatically increased during the last century due to intense anthropogenic activities and increasing metal need. Living organisms present in soils and aquatic systems are affected by these metals, and some of them are able to develop some specific strategies to cope with metal toxicity. To decipher the impact of metals on these organisms, and particularly their trafficking and storage, the determination of their localization at the tissue and cell level as well as their chemical forms (speciation) are crucial.

In this context, we combine various imaging techniques including synchrotron micro X-ray Fluorescence (µXRF), Transmission Electron Microscopy combined with Energy Dispersive X-ray analysis (TEM-EDX), and Nano- Secondary Ion Mass Spectrometry (nano-SIMS) to locate metals, and X-ray Absorption Spectroscopy with focused and non focused beam (µXAS and XAS) to clarify the nature of metal species.

This approach will be illustrated by two environmental studies. The first one is focused on the green micro-algae Chlamydomonas reinhardtii, an eukaryotic photosynthetic model for metal stress. Chlamydomonas reinhardtii is tolerant to cadmium but the mechanisms involved in this tolerance are misknown. We will show that intracellular thiol ligands are involved in Cd binding at the intracellular level, and that these sulfur ligands are not the only tolerance mechanism implemented by the cell. The second environmental study is related to mining soils contaminated with Cd and Zn. Among the existing soil treatments, phytoremediation has emerged as an alternative sustainable technique for two decades. We will show here how pioneer plants used in a phytostabilization process interact with metals in the soil.

This presentation illustrates the interest of combining imaging and spectroscopy techniques to get a global view of metals in complex environmental systems.


Marie-Pierre ISAURE (PAU CEDEX 9)
Invited
11:45 - 12:00 #6142 - LS09-OP034 Revealing the internal structure of microbial mats by FIB/SEM tomography.
Revealing the internal structure of microbial mats by FIB/SEM tomography.

Microbial mats are macroscopically visible communities of microorganisms, which play an important role for the interaction of microorganisms with their environment [1]. Important examples are mats dominated by Fe(II)-oxidizing  bacteria, which are typically found in wet, Fe(II)-rich environments such as lake sediments and mine tunnels [2,3].

The microscopic constituents of microbial mats can be analyzed using 2D microscopy approaches such as SEM. Other properties such as the microbial community and elemental composition are accessible using bulk analytical methods [e.g. 3]. However, little is known about the 3-dimensional structure of these mats.

Samples of two microbial mats from an abandoned mine tunnel were analyzed by FIB/SEM tomography using a Zeiss Auriga CrossBeam instrument. The samples were embedded in resin. Metal ions and minerals within the sample were responsible for contrast generation. The voxel size was 30 x 30 x 30 nm³. The resulting 3D reconstructions show the original arrangement of the microscopic constituents in great detail (Fig. 1,2). The two mats were dominated by different types of Fe(II)-oxidizing bacteria, which formed characteristic structures that were visible in the two respective volumes. A large part of both volumes appeared void.

The results of this analysis provide explanations for a series of macroscopically observed effects, such as the physical stability of the mats, high water content, efficient interaction with the feeding water, and the creation of a habitat for a variety of different microbial species. In addition, the results represent a valuable reference for the detection of microfossils in sedimentary rocks.

 

References

[1] WE Krumbein et al. (2003), in Fossil and recent biofilms. Springer Netherlands, pp. 1-27

[2] EJ Fleming et al. (2014), ISME J 8, pp. 804-815

[3] C Heim et al. (2015), Front Earth Sci 3


Fabian ZEITVOGEL (Tuebingen, Germany), Martin OBST, Birgit SCHROEPPEL, Claus J. BURKHARDT
12:00 - 12:15 #8754 - LS09-OP035b Environmental issues addressed by analytical TEM and X-rays absorption spectroscopies.
LS09-OP035b Environmental issues addressed by analytical TEM and X-rays absorption spectroscopies.

Fe-bearing minerals are widespread in earth surface environments, including soils, sediments and aquifers. Owing to their large specific area, these minerals can efficiently scavenge inorganic pollutants such as arsenic, nickel, etc. Metabolic activities of native microorganisms are capable of weathering either directly by enzymatic reduction, or indirectly through the reaction of biogenic hydrogen sulfides with Fe(III)-minerals. Metals/metalloids associated with such ferric solids phases can be released into solutions or be sequestrated into biogenic Fe(II)-containing minerals that result from direct and indirect bacterial transformation of Fe(III)-minerals. Here we investigate, using X-ray absorption spectroscopy (XAS) and high resolution transmission electron microscopy (HRTEM), the role (i) of Fe(II)-bearing minerals such magnetite and mackinawite nanoparticles to scavenge inorganic pollutants (arsenic or  nickel), and (ii) of aluminum-rich ferrihydrites in arsenic scavenging in river-bed sediments from a circumneutral river (pH 6−7) impacted by an arsenic-rich acid mine drainage (AMD). We therefore present recent investigations of natural and model systems that illustrate the relation between the crystal chemistry of metal/metalloids and their speciation and distribution at the Earth’s surface. Our findings show the importance of nanocrystalline Fe-minerals in delaying the long-term impact of inorganic pollutants natural environments.


Yuheng WANG, Areej ADRA, Maya IKOGOU, Georges ONA-NGUEMA, Farid JUILLOT, Nicolas MENGUY (PARIS), Guillaume MORIN
Salle Gratte Ciel 3
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SSW5
12:30 - 14:15

European and National Microscopy Networks
Lunch Workshop

12:30 - 12:35 Introduction. Thierry EPICIER (Keynote Speaker, LYON, France)
12:35 - 12:50 Electron microscopy in INSTRUCT: the key role for a center on image processing. José L. CARRASCOSA (Keynote Speaker, Madrid, Spain)
12:50 - 13:05 ESTEEM2: An European Integrated Infrastructure of Electron Microscopy facilities. Etienne SNOECK (Keynote Speaker, CEMES, Toulouse, France)
13:05 - 13:15 Atomic Resolution Cluster - a national electron microscopy infrastructure for Sweden. Crispin HETHERINGTON (Research Engineer) (Keynote Speaker, Lund, Sweden)
13:15 - 13:25 Presentation of the French Microscopy Infrastructure “METSA”. Mathieu KOCIAK (Keynote Speaker, Orsay, France)
13:25 - 13:35 The Spanish TEM network. César MAGÉN (Keynote Speaker, Zaragoza, Spain)
13:35 - 13:45 France Bio Imaging. Jean SALAMERO (Keynote Speaker, PARIS, France)
13:45 - 13:55 The French Infrastructure for Integrated Structural Biology (FRISBI). Bruno KLAHOLZ (Keynote Speaker, Illkirch, France)
13:55 - 14:05 The mission for inter-disciplinarity at CNRS: microscopy networks. Catherine CLERC (Keynote Speaker, Paris, France)
14:05 - 14:15 Wrap-up. Etienne SNOECK (Keynote Speaker, CEMES, Toulouse, France), José L. CARRASCOSA (Keynote Speaker, Madrid, Spain), José Maria CARAZO (Keynote Speaker, Spain)
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IM8-I
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IM8: Spectromicroscopies and analytical microscopy
SLOT I

Chairpersons: Gerald KOTHLEITNER (Chairperson, Graz, Austria), Anders MEIBOM (Chairperson, Lausanne, Switzerland), Bénédicte WAROT-FONROSE (Chairperson, CEMES, Toulouse, France)
14:15 - 14:45 #8326 - IM08-S53 Dynamics of magnetic domain walls and skyrmions studied by high resolution XMCD-PEEM microscopy.
Dynamics of magnetic domain walls and skyrmions studied by high resolution XMCD-PEEM microscopy.

Photoemission electron microscopy combined with x-ray magnetic circular dichroism (XMCD-PEEM) is a powerful synchrotron radiation technique that can be used to observe magnetic configurations of nano-objects with high spatial resolution. Combined with time resolution, using stroboscopic detection, the magnetisation dynamics of such objects can be studied with sub-nanosecond resolution.

We will describe the study of domain wall (DW) dynamics and magnetic skyrmions in multilayers of composition Pt/Co/MOx (M=Al, Mg), characterised by a large perpendicular magnetic anisotropy (PMA) and anti-symmetric exchange interaction (Dzyaloshinskii-Moriya interaction, DMI). Such interaction favours non-collinear magnetic textures such as chiral Néel walls and magnetic skyrmions.

In systems with large DMI, such as Pt/Co/AlOx with ultrathin Co, domain walls acquire a Néel chiral structure and move at large speeds when driven by current pulses. Most microscopic studies of domain wall dynamics have been performed using quasi-static measurements, where the DW position and structure are imaged before and after the excitation pulse. In order to better understand the details of the interaction between current and DW magnetisation, we have observed DWs during the application of the current pulses, by synchronising the current pulses with the x-ray pulses, in stroboscopic mode. The measurements reveal that the DWs move without inertia, showing a practically vanishing mass. The negligible inertial effects can be explained taking into account  the narrow domain wall width induced by the large PMA, the large damping parameter and the stabilising effect of the longitudinal field associated to the Dzyaloshinskii-Moriya interaction.

Magnetic skyrmions are nanometer scale whirling spin configurations, predicted in the 80's but only recently observed with high resolution magnetic microscopies. Their small size, topological protection and the fact that they can be moved by very small current densities call for applications to novel memory and logic devices where skyrmions are the information carriers. Here we report on the experimental observation of magnetic skyrmions in Pt/Co/MgO sputtered ultrathin magnetic nanostructures, stable at room temperature without applied magnetic field. XMCD-PEEM measurements allowed us to observe such skyrmions and to demonstrate their chiral Néel structure. The skyrmion sizes are typically of the order of 120 nm. Our experimental observations are well reproduced by micromagnetic simulations and numerical modelling. This allows the identification of the physical mechanisms governing the size and stability of the skyrmions, which are keys for the design of devices based on their manipulation.

REFERENCES

J. Vogel at al. Phys. Rev. Lett. 108, 247202 (2012)

O.Boulle et al., Nature Nanotechn. 11, 449 (2016)


Stefania PIZZINI (GRENOBLE CEDEX 9), Jan VOGEL, Nicolas ROUGEMAILLE, Fausto SIROTTI, Julio CESAR, Dayane CHAVES, Onur MENTES, Michael FOESTER, Lucia ABALLE, Andrea LOCATELLI, Olivier BOULLE
Invited
14:45 - 15:00 #5590 - IM08-OP139 Ten years of EMCD: what has been achieved.
Ten years of EMCD: what has been achieved.

Energy loss magnetic chiral dichroism (EMCD), established in 2006 [1] celebrates its 10th anniversary. EMCD is the TEM equivalent of the X-ray magnetic circular dichroism (XMCD) technique routinely applied on synchrotron beam lines for the study of magnetic moments. The EMCD signal is detected as an asymmetry in the energy filtered diffraction pattern, or alternatively as a slight difference in the fine structure of energy loss spectra for particular momentum transfers in the inelastic interaction (Fig. 1). The extremely high spatial resolution of modern TEMs makes EMCD interesting for spintronic and micromagnetic applications. In  the last decade, the technique has evolved into a reliable tool demonstrating nm-resolution, site selectivity and separation of spin and orbital moments via sum rules.

One of the consequences of EMCD is that the outgoing inelastically scattered probe electrons have topological charge. Structurally, they are identical with vortex electrons that can be routinely created in the electron microscope [2]. Such vortices are characterized by a spiraling wavefront and a phase singularity at the center, similar to optical vortices that were first described by Nye & Berry [3]. Owing to their short wavelength, these matter waves can be focused to atomic size. Another novel aspect is their magnetic moment, quantized in multiples of the Bohr magneton, independent of the electron spin. These features make electron vortices extremely attractive as a nanoscale probe for magnetic materials.

The discovery of vortex electron beams has spurred efforts to use them for EMCD because of their intrinsic chirality. It became soon clear that atom-sized vortices are needed to achieve this goal [4], as shown in Fig. 2. At the time of writing, the closest successful approach to such beams is the shaping of the incident wave front with a Cs corrector such that it matches the point group symmetry of the selected atomic column, revealing  EMCD signals with atomic resolution [5]. A promising alternative is the use of holographic vortex filters in the outgoing beam to detect spin polarized transitions [6], as sketched in Fig. 3. Other than in the standard EMCD geometry, this approach does not require a precise alignment of the crystal, and would thus allow the study of nanocrystalline and amorphous materials.

 

Acknowledgements: The financial support of the Austrian Science Fund (I543-N20, J3732-N27) and of the European research council, project ERC-StG-306447 is gratefully acknowledged.

 

[1] P. Schattschneider et al., Nature 441 (2006)  486

[2] J. Verbeeck et al.,Nature 467 (2010) 301

[3] J. F. Nye and M. V. Berry, Proc.Roy. Soc. A 336 (1974) 165

[4] P. Schattschneider et al., Ultramicroscopy 136 (2014) 81

[5] J. Rusz et al., Microscopy and Microanalysis 21 (2015) 499

[6] T. Schachinger et al., submitted; also this conference


Peter SCHATTSCHNEIDER (Wien, Austria), Thomas SCHACHINGER, Stefan LÖFFLER
15:00 - 15:15 #6365 - IM08-OP154 Nanoscale maps of magnetic behavior using STEM-EMCD.
Nanoscale maps of magnetic behavior using STEM-EMCD.

Key to the advancement of magnetic materials is the exploitation of emergent magnetic behavior arising from nanoscale confinement.   A comprehensive understanding of this behavior requires a technique capable of resolving it and mapping its relationship to parallel nanoscale property domains such as local structural imperfections, chemical environment, and interfacial proximity.  The relatively young electron absorption spectroscopy technique known as Electron Magnetic Circular Dichroism (EMCD) [1] promises to meet these criteria, and it has already demonstrated qualitative [2] and quantitative [3, 4] results for parallel electron probe illumination on sample regions in the sub 100 nanometer range.  While this already represents a spatial resolution superior to what can be achieved with x-rays [5], the use of parallel electron illumination means that high spatial resolution can only be achieved through the use of energy filtered diffraction patterns [3, 6] or energy filtered TEM imaging techniques [7].

In this work, we describe our progress in the development of an experimental methodology utilizing convergent electron probes for the purposes of acquiring EMCD datasets.  We name this method STEM-EMCD (see figure 1) and argue that it has two significant advantages over parallel beam illumination schemes.  First, the use of a convergent probe allows for the acquisition of arbitrarily large datasets, extending the effective acquisition time on a region of interest well beyond what is feasible for a single-shot experiment using parallel illumination.  This substantially improves the signal to noise ratio of EMCD spectral pairs, as shown in figure 1, and can be employed in such a way to mitigate significant beam damage.  Second, the diameter of the electron probe can be reduced to one nanometer or less.  If appropriate multivariate statistical methods are used to exploit spectral redundancy in the datacubes, it becomes possible to accurately approximate the raw data using a significantly reduced parameter space, dramatically suppressing the influence of statistical noise.  We demonstrate that this allows for sum rules to be applied on individual spectral pairs, enabling real-space maps of magnetic transitions to be generated with a spatial resolution approaching that of the beam diameter, as shown in figure 2.  We conclude with a discussion of some of the challenges still faced by the STEM-EMCD method as well as its prospects for directly addressing some of the most elusive questions in contemporary research in nanomagnetism.

[1]          Schattschneider, P. et al.: Detection of magnetic circular dichroism using a transmission electron microscope. Nature 441 (2006) 486.

[2]          Schattschneider, P. et al.: Magnetic circular dichroism in EELS: Towards 10 nm resolution. Ultramicroscopy 108 (2008) 433.

[3]          Lidbaum, H. et al.: Quantitative Magnetic Information from Reciprocal Space Maps in Transmission Electron Microscopy. Phys. Rev. Lett. 102 (2009) 037201.

[4]          Wang, Z.Q. et al.: Quantitative experimental determination of site-specific magnetic structures by transmitted electrons. Nat. Commun. 4 (2013) 1395.

[5]          Fischer, P.: Frontiers in imaging magnetism with polarized x-rays. Condens. Matter Phys. 2 (2015) 82.

[6]          Loukya, B. et al.: Electron magnetic chiral dichroism in CrO2 thin films using monochromatic probe illumination in a transmission electron microscope. J. Magn. Magn. Mater. 324 (2012) 3754.

[7]          Lidbaum, H. et al.: Reciprocal and real space maps for EMCD experiments. Ultramicroscopy 110 (2010) 1380.

[8]          Thersleff, T. et al.: Quantitative analysis of magnetic spin and orbital moments from an oxidized iron (1 1 0) surface using electron magnetic circular dichroism. Sci. Rep. 5 (2015) 13012


Thomas THERSLEFF (Uppsala, Sweden), Shunsuke MUTO, Jakob SPIEGELBERG, Ján RUSZ, Klaus LEIFER
15:15 - 15:30 #6839 - IM08-OP161 Surface oxidation issues in CO oxidation bimetallic surfaces studied by NAP-XPS.
Surface oxidation issues in CO oxidation bimetallic surfaces studied by NAP-XPS.

Near-ambient pressure X-ray photoemission spectroscopy (NAP-XPS) [1] is a modification of XPS so that surfaces can be studied in presence of gases and not only in vacuum. This is necessary when you want to access chemical and electronic properties of catalytic surfaces in realistic reaction conditions (variable P, T). We have focused on the study of bimetallic catalytic surfaces and their chemical/electronic surface properties during the oxidation of carbon monoxide. Indeed, the low temperature catalytic oxidation of carbon monoxide to carbon dioxide is an important reaction used in several areas and in particular for removing the CO traces from the H2 combustible in fuel cells. Pt and Au are well known catalysts for the CO oxidation reaction, however on both metals the oxygen dissociation remains the rate determining step. Associating Pt or Au with a second metal, that facilitates the oxygen activation while keeping free sites for CO adsorption on the surface, appears as an effective way to improve the catalytic performances of these two metals. The surfaces Pd70Au30(110) and Pt3Sn(111) have been chosen on the basis of the performance of real catalysts (bimetallic nanoparticles supported on oxides).

The NAP-XPS experiments were performed at ALS beamlines 9.3.2 & 11.0.2 (Berkeley, USA) and, more recently, at SOLEIL beamline TEMPO (St Aubin, France). NAP-XPS allows a fine characterization of electronic properties of catalytic surfaces including reactants, products and inert spectator species. In addition, NAP-XPS can also detect the gas phase species near the surface and can therefore monitor the reaction rates, at least qualitatively. The inherent variable photon energy of synchrotron sources enables depth profiling measurements which can be used to explore the segregation of species into the subsurface region under gas environments.

In the case of Pd70Au30(110) we have a very rich Au-surface (~ 85% of Au as determined by LEISS) due to Au segregation to the surface at thermodynamic equilibrium. By environmental STM [2] we could notice that the surface reorganizes at atomic level and eventually roughens just after adsorption of the reactive gases both under oxygen and CO. This is followed by a reversal of segregation where Pd migrates to the surface as it is determined by varying the photon kinetic energy in NAP-XPS. For Pt3Sn(111) we studied the two terminations (2x2) and (√3x√3)R30° obtained at different annealing temperatures. For both surfaces we have identified the presence of bridge and top sites during adsorption of CO. Oxygen adsorption studied by PM-IRRAS shows a higher interaction of oxygen with Pt3Sn(111)-(√3×√3)R30° than with Pt3Sn(111)-(2x2). By NAP-XPS we observe, in both surfaces, the partial segregation of Sn to the surface with increasing temperature in the presence of oxygen and under reaction conditions [3]. Finally we studied the evolution of the surfaces by NAP-XPSunder reaction conditions. A general result was observed for the studied bimetallic surfaces: the activity of the surface is higher in presence of chemisorbed oxygen (that we can compare to a“loose”oxide) but it rapidly decreaseswhen stoichiometric oxides are formed on the surface at higher temperatures (Figures 1 & 2).

References
[1] D.F. Ogletree et al., Rev. Sci. Instr. 73 (2002) 3872; M. Salmeron, R. Schlögl, Surf. Sci. Rep. 63 (2008) 169

[2] F.J. Cadete Santos Aires, C. Deranlot, Proc. EUREM12, Vol.III, P. Ciampor, L. Frank, P. Tománek, R. Kolarik, Brno 2000, I263; Y. Jugnet et al., Surf. Sci. 521 (2002) L639; M.A. Languille et al., Catal. Today 260 (2016) 39.

[3] Y. Jugnet et al., J. Phys. Chem. Lett. 12 (2012) 3707.


Eric EHRET, Bongjin Simon MUN, Marie-Angélique LANGUILLE, Jean-Jacques GALLET, Fabrice BOURNEL, Céline DUPONT, David LOFFREDA, Francisco José CADETE SANTOS AIRES (VILLEURBANNE CEDEX)
15:30 - 15:45 #4647 - IM08-OP138 Multidimensional Analysis of Local Compositional and Valence Fluctuations in the Model Complex Oxide La2MnNiO6.
Multidimensional Analysis of Local Compositional and Valence Fluctuations in the Model Complex Oxide La2MnNiO6.

Propelled by rapid advances in synthesis, characterization, and computational modeling, materials science is fast progressing toward a “materials-by-design” paradigm. While we can envision a very large number of materials combinations, we are unable to synthesize them in practice because existing characterization and modeling approaches fail to capture the inherent complexities of such systems. This shortcoming is amplified by the fundamental disconnect between highly local and volume-averaged structure-property models resulting from electron microscopy and X-ray diffraction investigations, respectively. Here we show how complementary analysis techniques can reveal previously overlooked local compositional and valence fluctuations around secondary phases in an oxide thin film, yielding powerful new insight into low-pressure thin film synthesis. We explore the model complex oxide, La2MnNiO6 (LMNO), which possesses a hierarchy of structural, chemical, and magnetic ordering across multiple length scales. This material shows great promise for next-generation spintronics and thermoelectrics, but its implementation is hindered by a poor understanding of the underlying structure that governs its macroscale magnetic performance. Using aberration-corrected scanning transmission electron microscopy (STEM) and energy-dispersive X-ray spectroscopy (STEM-EDS), we confirm the onset of cation ordering upon annealing; however, three-dimensional composition mapping using atom probe tomography (APT) reveals a fine distribution of NiO secondary phases, as shown in Figure 1. Electron energy loss spectroscopy (STEM-EELS) mapping of the chemical environment surrounding these particles shows significant fine structure changes, indicating a reduction in Mn valence, as shown in Figure 2. We consider these results in light of ab initio calculations, which show that the NiO phase and a transition region with reduced Mn valence is an inevitable result of low-oxygen pressure growth processes that are commonly used in fabrication of complex oxide heterojunctions. We argue that kinetic limitations on the reincorporation of NiO nuclei “locks” them into the film structure during synthesis; the resulting nanoscale network disrupts the long-range ferromagnetic ordering of the matrix, degrading macroscale magnetic properties. This array of experimental and theoretical techniques allows us to better understand the relationship between structure and magnetic properties, illustrating the need for a correlative, multidimensional approach to thin film characterization.


Steven SPURGEON, Yingge DU, Timothy DROUBAY, Arun DEVARAJ, Xiahan SANG, Paolo LONGO (Pleasanton, USA), Pengfei YAN, Paul KOTULA, Vaithiyalingam SHUTTHANANDAN, Mark BOWDEN, James LEBEAU, Chongmin WANG, Peter SUSHKO, Scott CHAMBERS
15:45 - 16:00 #5996 - IM08-OP148 Atomic-scale investigation of interface phenomena in two-dimensionally Sr-doped La2CuO4 and La2CuO4/ La2-xSrxNiO4 superlattices.
Atomic-scale investigation of interface phenomena in two-dimensionally Sr-doped La2CuO4 and La2CuO4/ La2-xSrxNiO4 superlattices.

Atomic-scale investigation of interface phenomena in two-dimensionally Sr-doped La2CuO4 and La2CuO4/ La2-xSrxNiO4 superlattices

 

Y. Wang, Y. E. Suyolcu, W. Sigle, U. Salzberger, F. Baiutti, G. Gregori, G. Cristiani, G. Logvenov, J. Maier, and P.A. van Aken

 

Max Planck Institute for Solid State Research, Heisenbergstr. 1, 70569 Stuttgart, Germany

 

Physics phenomena at interfaces of complex oxide heterostructures have stimulated intense research activity due to the occurrence of a broad range of electric and magnetic functionalities that do not pertain to the constituting single phases alone. Interface effects have been proven to be a powerful tool for improving or even inducing novel functionalities [1, 2]. In the case of interface superconductivity, the interatomic structure relaxation and charge transfer play a key role [3].

 

In this work, we combine atomic-resolved quantitative STEM imaging with analytical STEM-EELS/EDX analysis to investigate the interface effects in La2CuO4 (LCO)-based hetero-structures, i.e. superlattices of Sr two-dimensionally (2D) doped LCO, and LCO/La2-xSrxNiO4 (LSNO) hetero-structures, both exhibiting Tc up to 40 K, despite its non-superconducting constituents. HAADF images of the structure are displayed in Fig.1 confirming high-quality epitaxy. A detailed study of the cation distribution and concentration at the doped interfaces was performed by EDXS and EELS analyses. In the case of Sr-2D doped LCO superlattices, the analysis shows that Sr cations undergo an asymmetric redistribution, as a result of the MBE growth process. Oxygen K-edge fine structure analysis reveals that the hole concentration profile on the downward side of the nominal SrO layer is clearly decoupled from the Sr-profile indicating an accumulation of positive charges compensating the negatively charged SrO planes (Fig.2).

 

These results were supplemented by quantitative analysis of atomic-resolved high-angle annular dark-field (HAADF) and annular bright-field (ABF) images, which were simultaneously acquired. From these images the local lattice and copper-apical-oxygen distortions at the interfaces were evaluated. The relation of these results with the observed Tc will be discussed.

 

References:

 

[1] A.Gozar et al., Nature 455 (2008), p.782.

[2] F.Baiutti et al., Nat. Commun. 6 (2015), p. 8586.

[3] Y.Wang et al., ACS Appl. Mater. Interfaces (2016) DOI :10.1021/acsami.5b12813

[4] The research leading to these results has received funding from the European Union Seventh Framework Program under Grant Agreement 312483-ESTEEM2 (Integrated Infrastructure Initiative I3).


Yi WANG, Y. Eren SUYOLCU, Wilfried SIGLE (Stuttgart, Germany), Ute SALZBERGER, Federico BAIUTTI, Giuliano GREGORI, Georg CRISTIANI, Gennady LOGVENOV, Joachim MAIER, Peter VAN AKEN
16:00 - 16:15 #6003 - IM08-OP149 A Correlative Methodology based on SIMS for Advanced Materials Characterization.
A Correlative Methodology based on SIMS for Advanced Materials Characterization.

Development and innovations of modern high-performance materials rely crucially on the repertoire of characterization methods available. While individual techniques provide information on a specific aspect of the investigated material, a comprehensive understanding requires a correlative approach in which complementary information are needed from exactly the same Region of Interest (RoI). Therefore, correlative methodologies combining several techniques are indispensable in a wide range of scientific disciplines including materials science [1].

In contrast to the traditional EDX and EELS spectroscopies, SIMS is well-known for high-sensitivity (ppm), high dynamic range and more interestingly, isotope analysis for all the elements of the periodic table. This presentation will highlight the benefits of correlating SIMS imaging with complementary analysis using Electron Back Scattered Diffraction (EBSD) and Atomic Force Microscopy (AFM). As the SIMS images do not reveal crystallographic orientations of the grains in the microstructure, studies that aim to correlate structural defects such as twinning and grain boundary orientation in a multiphase material require that the strengths of SIMS are coupled with that of EBSD to probe the local crystallographic characteristics. As a first step, we correlate the SIMS with EBSD imaging to complement specific chemical characteristics seen in SIMS with the corresponding crystallographic characteristic captured in EBSD.

To further characterize the material and for correct interpretation, the exact topography of the RoI is required. We do topographic analysis using an AFM on the exact location where SIMS and EBSD analysis are carried out. In this way, a three-way correlative methodology is developed. As each of these analyses is done on separate instruments, specific methodological strategies are employed to overcome the challenges.

To illustrate this methodology, we selected the topic of hydrogen embrittlement in a TWinning Induced Plasticity (TWIP) steel [2]. As conventional techniques such as EDX are not capable of mapping hydrogen distribution, the SIMS approach brings a particularly strong advantage to this study. Prior to the SIMS analysis, the steel samples were electrochemically charged with deuterium to distinguish it from hydrogen naturally present in the sample. The SIMS images of H- and D- distributions are obtained from a Cameca NanoSIMS50 with a Cs+ primary ion beam. Then, EBSD and AFM analyses are carried out on the exact location to correlate SIMS chemical characteristics with crystallographic defects such as twins, grain boundaries and sample topography.

In this presentation, we will introduce and demonstrate this correlative paradigm for materials characterization. We will also present the scientific and technical challenges and discuss the strategies to go beyond the current state-of-the-art.

References:

T. Wirtz et al, Nanotechnology, Vol. 26, 434001, 2015.

L. Mosecker et al, Mat. Sci. Engr. A, 642, p71-85, 2015.

Acknowledgments: This work was co-funded by the Luxembourg National Research Fund (FNR) by the grant C13/MS/5951975.


Santhana ESWARA (Esch-sur-Alzette, Luxembourg), Rong HU, Lluís YEDRA, Jean-Nicolas AUDINOT, Alexander SCHWEDT, Cem TASAN, Joachim MAYER, Dierk RAABE, Tom WIRTZ
16:15 - 16:30 #6458 - IM08-OP158 Absorption-induced enhancement of X-ray contrast by soft X-ray emissions.
Absorption-induced enhancement of X-ray contrast by soft X-ray emissions.

Contrast in atomically-resolved EDX elemental mapping in real space or in reciprocal space channelling patterns, derived from characteristic X-ray emissions excited by a given probe, is generated by the variation in emission rate as the incident wave function is scanned over the target atoms in a crystal. This is achieved either by raster scanning a focused coherent probe in real space at a fixed orientation (conventional EDX mapping), or by a systematic scan in angle of a collimated beam, the entire EDX spectrum being collected for each pixel (ALCHEMI). Whilst the signal is essentially governed by the probability density of the probe wave function on each atom site, delocalization of the primary ionization event may lead to a reduction in contrast since the electron wave function is effectively sampled over a finite region.  The total ionization potential may be described in real space as a Lorentzian function of half-width b, and the event becomes more localized with an increase in X-ray energy. Thus coherent contrast provides a map in real or reciprocal space of the electron beam interaction with the ionization potential of a specific atomic species.

However incoherent scattering by an absorptive potential leads to a progressive increase in a separate incoherent background component, this being associated with an EDX spectrum which is representative of the overall specimen composition. Generally speaking, coherent contrast is generated within the top 10 – 30 nm, and this initial contrast is progressively undermined by the incoherent background contribution in the form of an absorptive potential in atomic resolved maps or thermal diffuse scattering Kikuchi band contrast in channelling patterns [1].

The relative detected proportion of coherent compared with incoherent signal is altered by X-ray absorption within the specimen. It is envisaged that strong absorption of soft X-rays (described by a small mean free path λ) will enhance coherent contrast in both lattice image and channelling patterns compared to that derived from more energetic X-rays. High energy X-rays should have better contrast in the coherent signal due to increased localization, but this begins to be dominated by an incoherent signal that builds up with thickness. Softer X-rays may have somewhat diminished coherent contrast due to greater intrinsic delocalization, but this is offset by a more strongly attenuated incoherent signal with increasing thickness.

X-ray channelling patterns near the orientation were obtained from GaAs using 300 keV electrons together with a custom-built acquisition script run on an FEI Titan TEM. Fig. 1 shows PCA noise-reduced patterns compared with simulations in which both delocalization and absorption are taken into account. Close inspection reveals greater overall dynamic contrast occurs for softer X-rays. Experimental K/L ratio maps are shown in Fig. 2 (tilt 26o and take off angle 21o), being consistent with the calculation where the central As K/L contrast ratio starts to diminish with increasing thickness due to X-ray absorption (λK = 16 μm, λL = 0.15 μm, (bK= 0.024 Å, bL= 0.13 Å) .  A similar but smaller effect occurs for the mapped Ga K/L ratio (λK = 42 μm, λL = 1.2 μm,  bK= 0.027 Å, bL= 0.15 Å) since Ga L-shell X-rays are less strongly absorbed than the As L. Without X-ray absorption, a central enhancement remains for all thicknesses, and the harder X-rays retain more contrast.  Fig. 3 shows the separate coherent and incoherent components together with the total contribution. Note the incoherent contrast is similar for all excitations.

In conclusion, experimental observations are consistent with a model that predicts an increase in contrast from soft X-rays compared with more energetic X-rays, thus demonstrating that X-ray absorption may play a greater role than delocalization in determining overall contrast. It is anticipated that X-ray absorption, enhanced by grazing angle specimen-detector geometry, may be useful in enhancing the coherent/incoherent scattering for soft X-rays. Calculations have shown analogous effects occur in atomically-resolved X-ray STEM imaging [1].

[1] C.J. Rossouw, ‘Channelling and atomic resolution STEM using X-ray emissions with absorption’, Microsc. Microanal. 21 (2015), 1077 - 1078.


Chris ROSSOUW, David ROSSOUW (Dundas, Canada), Andreas KORINEK, Steffi WOO, Gianluigi BOTTON
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IM3: New Instrumentation
SLOT I

Chairpersons: Emmanuel BEAUREPAIRE (Chairperson, Polytechnique, Paris, France), Christian COLLIEX (Chairperson, LPS, Orsay, France), Jörg ENDERLEIN (Chairperson, Göttingen, Germany), Andreas ENGEL (Chairperson, Delft, The Netherlands), Ernst H.K. STELZER (Professor) (Chairperson, Frankfurt am Main, Germany)
14:15 - 14:45 #8633 - IM03-S38 New developments in direct electron detecting cameras and their importance for cryo-EM.
New developments in direct electron detecting cameras and their importance for cryo-EM.

Direct electron detectors have played a key role in the recent increase in the power of single particle electron cryomicroscopy (cryo-EM). In this talk, I will summarise the background to these recent developments, give a practical guide to their optimal use, and discuss future directions.


Richard HENDERSON (Cambridge, United Kingdom)
Invited
14:45 - 15:00 #6293 - IM03-OP095 Direct detection and electron counting - A beginning of a new era for electron microscopy.
Direct detection and electron counting - A beginning of a new era for electron microscopy.

Over the last decade, great progress has been made in the instrumentation of transmission electron microscopy (TEM) through the introduction of aberration correctors, electron energy monochromators, and a wide variety of TEM specimen holders designed for in-situ applications. With these new capabilities, a wealth of advanced experimental data can be easily generated by advanced TEM systems.  However, the development of a revolutionary image capture device has been lacking; this effectively makes imaging detectors the main bottleneck when striving to achieve the full potential performance of an advanced TEM.

Traditional image detectors use scintillator and optical transfer path (fiber-coupling or lens) to convert high energy electrons to photons that are subsequently transferred to the imaging sensor to form an image.  One of the disadvantages of this indirect detection approach is the loss of image resolution and sensitivity during the electron-photon conversion and the photon transfer as additional noise sources that significantly degrade the signal-to-noise ratio (SNR) of the image detector.

Very recently direct detection imaging devices have been successfully developed based on technology advancement made in CMOS (complementary metal oxide semiconductor) design and manufacturing, high speed data architectures, vastly increased memory densities and speed, etc. The elimination of scintillator and subsequent optical transfer path has significantly improved the detective quantum efficiency (DQE) – a critical measure of SNR for resolution and sensitivity of an imaging device. The state-of-the-art direct detection imaging device further boosts the DQE and image quality under extremely low beam conditions by electron counting at high speed (e.g. 400 fps @ 4k x 4k resolution) to eliminate the sensor readout noise and minimize the electron scattering noise. Figure 1 shows the comparison of DQE measurement at 300 kV for K2 direct detection cameras operated in electron counting (solid blue) and linear (dotted blue) mode, and scintillator/fiber optical coupled cameras (purple). It is clear that electron counting has significantly restored the DQE performance of direct detection cameras for all frequencies.

This new generation of direct detection imaging device has revolutionized the field of cryo-electron microscopy (cryoEM) in structural biology and is starting to impact many applications in electron microscopy of materials science, for example, in-situ microscopy, 4D STEM, imaging beam sensitive materials, quantitative measurement of radiation damage or quantitative electron microscopy, etc. Direct detection and electron counting are poised to advance electron microscopy into a new era.


Ming PAN (Pleasanton, USA)
15:00 - 15:15 #6818 - IM03-OP099 Characterisation of the Medipix3 detector for electron imaging.
Characterisation of the Medipix3 detector for electron imaging.

ABSTRACT

Hybrid pixel sensors, originally developed for particle physics, incorporate advanced analogue processing and digital conversion circuitry at the individual pixel level. Medipix3 [1] is an example of such a sensor and we have investigated its performance as an imaging detector for transmission electron microscopy (TEM). Measurements were performed with electron beam energies in the range, 60–200 keV on a JEOLARM200cF TEM/STEM [2] utilising a 256x256 pixel Medipix3 detector with 300 µm thick Si sensor layer.

In order to characterise the Modulation Transfer Function (MTF) and the Detective Quantum Efficiency (DQE) performance, 32 repeated datasets were acquired containing images of free space and a knife-edge for known beam current conditions at each energy across the full range of relevant Medipix3 energy threshold values. Data was acquired in Single Pixel Mode (SPM) and in Charge Summing Mode (CSM) [3], where, in the latter mode, effects from charge spreading in individual electron events are corrected for on the detector.  We have also measured DQE(0) using the methods described in [4].

At high lower threshold (THL) DAC values the MTF for this counting detector in single pixel mode is better than the theoretical maximum due to the reduction in the effective pixel size [4] as shown in Figure 1. However, the DQE at such high THL DAC values in single pixel mode is significantly reduced as seen in Figure 2, seeing as many real electron events are now not counted as the charge is deposited in more than one pixel and therefore falls below the threshold for detection.  Consequently, there is a balance to be made between optimizing DQE and MTF, depending on the exact requirements in the given application.

As is shown in Figure 3, the use of the CSM allows the achievement of a much higher MTF whilst retaining high DQE by using a lower threshold DAC value.  This therefore offers additional benefits over the more conventional SPM, thus allowing very high efficiency imaging whilst preserving maximal detail in the images, which is particularly beneficial for minimizing the required electron dose to the sample required to produce interpretable data, with obvious applications in beam sensitive materials.

 

ACKNOWLEDGEMENTS

This work was funded by the EPSRC (Fast Pixel Detectors: a paradigm shift in STEM imaging, EP/M009963/1).  Financial support from the European Union under the Seventh Framework Program under a contract for an Integrated Infrastructure Initiative (Ref 312483-ESTEEM2) is gratefully acknowledged.

 

 

REFERENCES

[1] R. Ballabriga, M. Campbell, E. Heijne, X. Llopart, L. Tlustos, W. Wong, Medipix3: A 64 k pixel detector readout chip working in single photon counting mode with improved spectrometric performance, Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Volume 633, Supplement 1, May 2011, Pages S15-S18, ISSN 0168-9002, http://dx.doi.org/10.1016/j.nima.2010.06.108.

(http://www.sciencedirect.com/science/article/pii/S0168900210012982).

[2] S. McVitie, D. McGrouther, S. McFadzean, D.A. MacLaren, K.J. O’Shea, M.J. Benitez, Ultramicroscopy 152, 57 (2015).

[3] Pennicard D., Ballabriga R., Llopart X., Campbell M. and Graafsma H., Simulations of charge summing and threshold dispersion effects in medipix3, Nucl. Instrum. & Meth. In Physics Research A 636 (2011) 74-81.

[4] McMullan G., Cattermole D.M., Chen S., Henderson R., Lloport X., Summerfield C., Tlustos L. and Faruqi A.R., Electron imaging with Medipix2 hybrid pixel detector, Ultramicroscopy 107 (2007), 401-413.


Jamil MIR, Jamil MIR (Oxford, United Kingdom), Robert CLOUGH, Ruaraidh MACINNES, Christopher GOUGH, Richard PLACKETT, Hide SAWADA, Ian MACLAREN, Dima MANEUSKI, Val O'SHEA, Damien MCGROUTHER, Angus KIRKLAND
15:15 - 15:30 #5291 - IM03-OP084 Ptychographic phase reconstruction and aberration correction of STEM image using 4D dataset recorded by pixelated detector.
Ptychographic phase reconstruction and aberration correction of STEM image using 4D dataset recorded by pixelated detector.

In scanning transmission electron microscopy (STEM), one can obtain a variety of STEM images such as bright-field (BF) and annular dark-field (ADF) STEM images by changing the shape of the scintillator. However, the intensity distribution of convergent beam electron diffraction (CBED) patterns at the detector plane is yet to be fully utilized. Meanwhile, direct electron detectors with fast frame rate have recently been commercialized and used in electron microscopy. Such detectors, when used for recording CBED pattern images for each STEM probe position, are called pixelated STEM detectors. With the obtained 4-dimensional (4D) dataset, any shape of STEM detector can be synthesized in a post processing by a free selection of the integration area. Therefore, we can synthesize variety of STEM images such as differential phase contrast (DPC) and annular bright field (ABF) images, if we once record the image signal with a pixelated detector.

The 4D dataset can also be used for the advanced image processing techniques such as ptychography, which has been shown to provide high efficiency for reconstructing the phase image of an object [1,2]. Using ptychography, not only the phase contrast can be enhanced but also the effect of lens aberrations to the image such as defocus can be corrected by the post processing using the information collected by a pixelated detector.

Experiments were performed using an aberration corrected microscope (JEOL JEM-ARM200F) equipped with a pixelated detector (pnDetector pnCCD), the fast direct electron detector, which can record images at a speed of 1,000 fps in a full frame mode (264 x 264 pixels). Binning or windowing can increase the speed. The camera was placed below the ADF detector to enable simultaneous recording.

Figure 1 shows STEM images of a monolayer graphene obtained at 80 kV. Fig. 1a shows an ADF image obtained with the probe current of approximately 0.2 pA and the dwell time for a pixel of 0.5 ms. Because of a combination of low dose and residual uncorrected aberrations, the lattice contrast of graphene is almost buried in the noise originated from 50 Hz commercial frequency. Fig. 1b shows a reconstructed phase image using ptychography. The image contrast is significantly improved compared to the simultaneous ADF image, but the contrast transfer of the image (see the Fourier transform displayed in the inset) is anisotropic, resulting in uncertain positions of carbon atoms. This is because there remains large two-fold astigmatism and defocus in the image shown in Fig. 1(b), because we could not adjust those by observation of the ADF image due to the weak image signal. Fig. 1c is a phase image in which the aberrations are corrected through post processing using the same 4D dataset by applying correction functions in the spatial frequency domain. The image is no longer anisotropic and the carbon atomic positions can be unambiguously determined. Although the same amount of electron dose is used to form the ADF and the corrected phase images, the result clearly shows the benefit of ptychographic phase reconstruction in improving image signal to noise and being able to correct aberrations through post processing.

Figure 2 shows the ptychographic phase maps of the 4D dataset at a certain spatial frequency. With an aberration-free electron probe, they would be flat phase on the two sidebands, and the phase difference between the bands be π. In Fig. 2a, the map of the original dataset, there is a phase gradient inside each sideband because the aberrations were present in the electron probe. Fig. 2b is the correction function that compensates for the aberration seen in Fig. 2a. Fig. 2c is the corrected phase map and corresponding to the image in Fig. 1c. Here, only defocus and two-fold astigmatism are corrected but corrections of other higher order aberrations are in principle possible.

Figure 3 shows through focus images created in the same way as above. As we know the full information on the electron wave at the condenser aperture plane, we can induce any aberrations such as defocus.

References

[1] PD Nellist et al., Nature, 374 (1995) p. 630.

[2] TJ Pennycook et al., Ultramicroscopy, 151 (2015) p. 160.

Acknowledgement

PDN and HY acknowledge funding from the EPSRC through grant number EP/M010708/1.


Ryusuke SAGAWA (Tokyo, Japan), Hao YANG, Lewys JONES, Martin SIMSON, Martin HUTH, Heike SOLTAU, Peter NELLIST, Yukihito KONDO
15:30 - 15:45 #5383 - IM03-OP086 A Compressive Sensing based acquisition design for quantitative ultra-low dose high-resolution imaging and spectroscopy in the STEM.
A Compressive Sensing based acquisition design for quantitative ultra-low dose high-resolution imaging and spectroscopy in the STEM.

Typically, the Nyquist frequency determines the sampling rate required to resolve a specific feature in a dataset. In practice this requires oversampling by twice the maximum relevant frequency. As such this provides a lower limit for the electron dose necessary to acquire the data experimentally. However, by applying the compressive sensing (CS) principles of sparsity and incoherence, this limit can be overcome and therefore a substantial reduction of the total electron dose can be achieved. CS theory then allows a recovery of the essential image information from randomly undersampled images. The theory of CS has been successfully applied in a number of areas, e.g. astronomy, MRI scanning, electron tomography [1], and most recently first experimental designs for STEM have been reported [2,3]. Despite these developments, CS acquisition schemes able to recover quantifiable information from atomically resolved images of beam-sensitive materials, time-changing processes and spectroscopic datasets have so far not been established  for STEM.
Here we demonstrate such a CS-based STEM acquisition implementation and benchmark its performance at atomic resolution using a variety of materials, including complex oxide ceramics with an inhomogeneous distribution of point defects as illustrated in fig. 1, but also highly beam-sensitive catalysts with atomic resolution [4]. The implementation relies on custom-built hardware and software which controls an electrostatic beam shutter to blank the electron beam during all but a few randomly chosen pixels through a regular image (or indeed spectrum image) acquisition. The total electron dose used to form a whole dataset can thus be tailored according to the electron damage threshold of the sample under investigation whilst maintaining all other acquisition parameters identical to regular data acquisition, allowing a seamless transition from ‘fully sampled’ to ultra-low-dose conditions. It will be shown that datasets acquired in this fashion down to a few % of the total incoming dose (see fig. 2) can be reconstructed to yield a truthful atomic resolution representation of the sample, using a variety of reconstruction algorithms [5,6]. We show that this implementation of CS can also be extended to 2D spectroscopy mapping and simultaneous HAADF image acquisition.. These results open the door to practical ultra-low dose high-resolution imaging and spectroscopy in the STEM for very beam sensitive samples, where the level of sampling can simply be chosen depending on the damage threshold of the material being investigated [7].
References
[1] Z. Saghi et al., Nano Letters 11 (2011), 4666
[2] Q.M. Ramasse et al., 15th Frontiers of Electron Microscopy in Materials Sciences (FEMS); 2015, September 13-18; Tahoe City, California, p76;
[3] A. Béché et al. , Appl. Phys. Lett. 108 (2016)
[4] D. Mücke-Herzberg et al. submitted
[5] A. Stevens et al. , Microscopy 63 (2014), 41-5;
[6] J. Ma. et al. submitted
[7] SuperSTEM is the UK EPSRC National Facility for Aberration-Corrected STEM, supported by the Engineering and Physical Science Research Council. PNNL, a multiprogram national laboratory, is operated by Battelle for the U.S. Department of Energy under Contract No. DE-AC05-76RLO1830. PAM, ZS and RL acknowledge funding under ERC Advanced Grant 291522-3DIMAGE.



Dorothea MUECKE-HERZBERG (Daresbury, United Kingdom), Patricia ABELLAN, Michael SARAHAN, Iain GODFREY, Zineb SAGHI, Rowan LEARY, Andrew STEVENS, Jackie MA, Gitta KUTYNIOK, Feridoon AZOUGH, Robert FREER, Paul MIDGLEY, Nigel BROWNING, Quentin RAMASSE
15:45 - 16:00 #6174 - IM03-OP094 Compressed sensing for beam sensitive materials imaging in Scanning Transmission Electron Microscopy.
Compressed sensing for beam sensitive materials imaging in Scanning Transmission Electron Microscopy.

Transmission electron microscopy (TEM) is a very powerful technique to investigate materials down to their atomic components. Its versatility allows quantifying samples from their shape to the nature of their constituents and surroundings. However, the strong interaction of the electron beam with matter potentially induces damages in samples under investigation, especially for those composed of soft matter such as zeolites, metal organic frameworks (MOFs) and most life science samples. Current workarounds involve the reduction of the beam intensity, such as in the so-called low dose imaging, or increase of the detector performances as provided e.g. by direct electron detectors.

Recently, improvement in signal processing lead to the development of compressed sensing [1, 2], a numerical algorithm based on the assumption that real life images are sparse in some particular well-chosen basis. Images can then be expressed with much less components than what required by the Nyquist sampling theorem. By extension, not all pixels in a given image are necessary and only a random selection of them is sufficient to retrieve the original image with fidelity. By definition, compressed sensing is a very dose efficient technique as only parts of the sample need to be exposed to the electron beam to reconstruct a faithful image. So far, only theoretical implementations of compressed sensing were investigated in the TEM community, focused mostly on the case of tomographic reconstructions [3].

Very recently, we demonstrated the first physical implementation of compressed sensing in a Scanning TEM (STEM) based on the use of a solenoid as a fast beam blanker [4]. The solenoid is placed in the condenser plane of a STEM in a specially designed condenser aperture holder with feedthrough electrical contacts. By synchronizing the STEM signal with the current source driving the solenoid, we successfully acquired compressed images by shifting the beam away from the region of interest on blanked pixels. The case of both medium scale imaging (Fig.1) and high resolution imaging (Fig. 2) was investigated and reconstructed using the SPGL1 algorithm [5] with a signal compression of 80%. The present setup, although still quite far from low dose imaging conditions, has lead to successful imaging of a cross grating and a SrTiO3 sample. Latest results revealed that a checkerboard pattern, the most demanding pattern for the fast beam blanker, could be acquired with a dwell time of 40 µs and a beam deflection of 225 nm, as shown in Fig. 3.

By further improving the experimental setup, we expect reducing the acquisition dwell time to values within the µs range. Such improvements will offer possibilities for realizing improved images and tomography experiments of electron beam sensitive materials.

 

[1] Candes E. J. et al., Communications on Pure and Applied Mathematics, 59 (2006) 1207-1223.

[2] Donoho, D., IEEE Transactions on Information Theory 52 (2006) 1289-1306.

[3] Saghi Z. et al., Advanced Structural and Chemical Imaging 1 (2015) 1-10.

[4] Béché A., Goris B., Freitag B. and Verbeeck J., APL 108 (2016) 093103.

[5] Van den Berg E. and Friedlander M. P., SIAM Journal on Scientific Computing, 31 (2008) 890-912.

 

Aknowledgments: A.B and J.V. acknowledge funding from the ERC Grant No. 278510 VORTEX and under a contract for an Integrated Infrastructure Initiative No. 312483 ESTEEM2. B.G. acknowledges the FWO for a postdoctoral research grant.


Armand BÉCHÉ (Antwerp, Belgium), Bart GORIS, Bert FREITAG, Jo VERBEECK
16:00 - 16:15 #5719 - IM03-OP087 Implementing electron energy-gain spectroscopy in scanning transmission electron microscope.
Implementing electron energy-gain spectroscopy in scanning transmission electron microscope.

Spectro-microscopy techniques like electron energy-loss spectroscopy (EELS) and cathodoluminescence (CL) are routinely used nowadays for optical characterization of nanostructures with wonderful spatial resolution. With advanced monochromators, the energy resolution in EELS can be as good as 10 meV [1]. Nevertheless, with monochromators, there is a trade-off between the signal intensity and the energy resolution. Conversely, the spatial resolution in common optical microscopes is diffraction limited, though the spectral resolution is very often down to the sub meV regime. Hence, it is a high time to look for a technique, which can combine the spectacular spectral resolution of optical probes and spatial resolution of the electron probe. The possibility of integrating these two probes was first anticipated by Prof. Archie Howie in 1999 [2], and a few years later, a compact theoretical formalism of the technique named electron energy-gain spectroscopy (EEGS) was proposed [3].

In EEGS, electrons pick up energy from external illumination, which is very often the coherent output of a finely tuned laser. Although the electron and photon do not couple linearly in free space due to energy-momentum mismatch, the presence of a nanostructure can break the mismatch by providing the extra momentum through induced light fields, like the evanescent plasmonic field of the nanostructure. Employing synchronized femtosecond pulses of electrons and very intense pulse of photons, electron energy gain (EEG) has been demonstrated, a technique commonly called as photon-induced near-field electron microscopy (PINEM) [4]. It has shown that electrons can absorb or emit photons and the resulting spectra consist of peaks positioned at energies integral multiples of the laser photon energy on both sides of the zero loss peak. Multiphoton absorption/emission is a non-linear phenomenon, occurring at very high laser peak intensity (~ GWcm-2), but this can also be triggered at comparatively lower laser intensity, if the laser wavelength is tuned at particle plasmon wavelength [5]. The multiphoton emission and absorption probabilities depend only on the temporal ratio of the electron and photon pulse and the delay between them. The laser can be described as a coherent photon state, which excites a coherent plasmon state and the electron can absorb photon resulting in gain. And the reverse process is a stimulated photon emission by the electron (SEELS) in which the electron loses one photon energy. For large number of incident photons, these two probabilities are the same [5]. For a moderate laser intensity the EEGS or SEELS probability is few ten times larger than the EELS probability [3,5].

In our lab, we are developing an EEGS setup in one of the existing STEM (VG HB 501). The goal is to do spectroscopy by varying the laser energy and detecting the energy gain of electrons. We use a paraboloid mirror (used in CL) to focus the laser output on the sample surface, which can be used over a wide wavelength range without any change of optics. In a normal EEG set up, a pulsed laser is used as excitation source and a pulsed gun is used to detect only those electrons which goes through energy gain or loss in interaction with the laser pulse. In this work we are not using a pulsed gun. A pulsed gun is expensive to make, pulse duration is not easily tunable. A high brightness and thus high spatial resolution is not achieved easily with pulsed gun. We will use a Q-switched pulsed dye laser with tunable wavelength (570-900 nm) and typical pulse duration of approximately 30 ns.

The instrumental details and some preliminary results will be discussed. We expect that geometries like nanostars (Figure 1(b)) which can confine a huge amount of field might be a promising candidate that can yield much stronger EEGS signals at moderate laser intensity.

References:

[1] O. L. Krivanek et al. Nature. 2014, 514, 209.

[2] A. Howie, Inst. Phys. Conf. Ser. 1999, 161, 311.

[3] F. J.  García de Abajo, and M. Kociak, New J. Phys. 2008, 10, 073035.

[4] B. Barwick et al.  Nature 2009, 462, 902.

[5] A. A. Garcia, and F. J.  García de Abajo, New J. Phys. 2013, 15, 103021.

 


Pabitra DAS (ORSAY), Jean-Denis BLAZIT, Marcel TENCÉ, Luiz TIZEI, Hugo LOURENÇO MARTINS, Christian COLLIEX, Mathieu KOCIAK
16:15 - 16:30 #5951 - IM03-OP088 The concept of quantum electron microscopy.
The concept of quantum electron microscopy.

Following a recent suggestion [1] that interaction-free measurements are possible with electrons, we have analyzed the possibilities to use this concept for imaging of biological specimen with reduced damage. We have also made preliminary designs for an atomic resolution interaction-free electron microscope, or “quantum electron microscope” [2], for one example see figure 1.

The idea of interaction-free measurements follows Elitzur and Vaidman [3], who proposed that an opaque object may be observed by detecting a photon that did not interact with that object. This concept uses a Mach-Zehnder interferometer in which one branch of the particle wave passes through the specimen (“specimen beam”) while the other part follows another path (“reference beam”).  For a substantial reduction of the interaction, the amplitude of the wave passing through the specimen must be small and the interaction must be repeated many times. To implement this concept in an electron microscope would require a number of unique components not found in conventional transmission electron microscopes. These components include a coherent electron beam-splitter or two-state-coupler, and a resonator structure to allow each electron to interrogate the specimen multiple times. A two-state-coupler has the function of moving the electron wave slowly between the reference beam and the specimen beam, as in a Rabi-oscillation. We have come up with four different choices for this: a thin crystal, a grating mirror, a standing light wave and an electro-dynamical pseudopotential.

Figures 2 shows a typical example of the theoretical output of a measurement, where for each pixel there is signal in the reference beam, the specimen beam and the inelastic channel, possibly detected in an energy loss measurement. Figure 3 shows the advantage of interaction free measurement in the detection of the presence of a dark pixel as compared to dark field microscopy. In the analysis of the image contrast that interaction-free microscopy can create, our tentative conclusion is that transparent specimen can be detected, but different transparencies cannot be distinguished [4]. Other modes of operation of a microscope with multiple interactions with the specimen, however, may enable this.

 

This research is funded by the Gordon and Betty Moore Foundation.

 

1] Putnam, W.; Yanik, M. Phys. Rev. A 2009, 80, 040902.

2] Kruit, P.; R. G. Hobbs, C-S. Kim, Y. Yang, V. R. Manfrinato, J. Hammer, S. Thomas, P. Weber, B. Klopfer, C. Kohstall, T. Juffmann, M. A. Kasevich, P.Hommelhoff, K. K. Berggren. Ultramicroscopy (2016), doi:10.1016/j.ultramic.2016.03.004.

3] Elitzur, A. C.; Vaidman, L. Found. Phys. 1993, 23, 987–997.

4] Thomas, S.; Kohstall, C.; Kruit, P.; Hommelhoff, P. Phys. Rev. A 2014, 90, 053840.


Pieter KRUIT (Delft, The Netherlands), Karl BERGGREN, Peter HOMMELHOFF, Mark KASEVICH
Salle Bellecour 1,2,3

"Wednesday 31 August"

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MS1-I
14:15 - 16:30

MS1: Structural materials, defects and phase transformations
SLOT I

Chairpersons: Patricia DONNADIEU (Chairperson, ST MARTIN D'HERES CEDEX, France), Randi HOLMESTAD (Chairperson, Trondheim, Norway), Simon RINGER (Chairperson, Sydney, Australia)
14:15 - 14:45 #5681 - MS01-S65 The Role of Interfacial Structure and Defects in Precipitation Pathways in Aluminium Alloys.
The Role of Interfacial Structure and Defects in Precipitation Pathways in Aluminium Alloys.

Precipitation hardening in aluminium alloys provides well-known examples of how identical materials can develop very different microstructures through different processing conditions or the addition of trace alloying elements. Desirable microstructures for useful materials properties such as high mechanical strength often involve the precipitation of metastable phases from a supersaturated solid solution. A textbook case is the precipitation of Guinier-Preston (GP) zones in Al-Cu alloys [1] and the subsequent formation of θ” and θ’ metastable phases [2]. More than 75 years after the original work by Guinier and Preston, the atomic-scale mechanisms behind the solid-solid phase transformations associated with the nucleation and growth of those phases remain unknown. Such an understanding is required if one is to move towards rational design of new high-performance alloys aided by modern computational techniques.

In the last eight years aberration-corrected scanning transmission electron microscopy (STEM) has enabled significant progress in the determination of bulk and interfacial structures of alloy precipitates. Here we present recent work combining STEM observations and computer simulations for the structural and energetics characterisation at the atomic scale of precipitate phases and their interfaces.  We will show that even classic binary alloy systems such Al-Cu, Al-Au and Al-Ag can reveal surprising characteristics. For example, the two isostructural phases θ’ (Al2Cu) and η (Al2Au) display vastly different interfacial structures (see Fig. 1) [3-5]. These differences can be explained by the calculated defect energies for Cu and Au solute in aluminium [5]. Another unexpected finding was that of a new intermediate phase, denoted Z, in the Al-Ag system. This phase is coherent with the Al matrix and consists of alternating bilayers of Ag and Al (see Fig. 2) [6]. The structure of the Z phase is analogous to that of Ag segregating on θ’  precipitates (see Fig. 3) [7]. Finally, we will present examples of precipitation pathways being altered through the introduction of certain alloying additions or lattice defects.

The authors acknowledge funding from the Australian Research Council (DP150100558 and LE0454166), computational support from the Monash Sun Grid cluster, the National Computing Infrastructure and Pawsey Supercomputing Centre funded by the Australian Government, and the use of facilities within the Monash Centre for Electron Microscopy.

[1]   A. Guinier, Nature 142 (1938) 569; G. D. Preston, Nature 142 (1938) 570.

[2]   J.M. Silcock, T.J. Heal, and H.K. Hardy, J. Inst. Met. 82 (1953) 239.

[3]   L. Bourgeois, C. Dwyer, M. Weyland, J.F. Nie and B.C. Muddle, Acta Mater. 59 (2011) 7043.

[4]   L. Bourgeois, N.V. Medhekar, A.E. Smith, M. Weyland, J.F. Nie and C. Dwyer, Phys. Rev. Lett. 111 (2013) 46102.

[5]   L. Bourgeois, Z. Zhang, J. Li and N.V. Medhekar, Acta Mater. 105 (2016) 284.

[6]   Z. Zhang, L. Bourgeois, J.M. Rosalie and N.V. Medhekar, to be submitted.

[7]   J.M. Rosalie and L. Bourgeois, Acta Mater. 60 (2012) 6033.


Laure BOURGEOIS (Victoria, Australia), Zezhong ZHANG, Yong ZHANG, Yiqiang CHEN, Julian ROSALIE, Jiehua LI, Christian DWYER, Nikhil MEDHEKAR
Invited
14:45 - 15:00 #6138 - MS01-OP208 Analytical electron tomographic investigations revealing self stabilization of core-shell precipitates through opposing diffusion processes.
Analytical electron tomographic investigations revealing self stabilization of core-shell precipitates through opposing diffusion processes.

For a thorough understanding of a material, investigations at the nanoscale are often essential. Analytical techniques like electron energy loss spectroscopy (EELS) and energy dispersive X-ray spectroscopy (EDXS) in scanning transmission electron microscopy (STEM) can reveal important chemical information necessary for the development and improvement of high-tech materials. The integrative character of the signal acquired through transmission, however, might hide important morphological details of the material, relevant for its properties. Those details can be revealed through electron tomography, where the data is acquired at different tilt angles and, after alignment, reconstructed to form a full 3D model of the material under investigation.  The combination of both techniques, analytical STEM and tomography, gives full insight into structure and composition of a material [1].

 

In this study an industrially cast aluminum alloy, containing scandium (Sc) and zirconium (Zr) rich nano-precipitates, was investigated at different stages of ageing. High resolution STEM and analytical EELS and EDX tomographic investigations were carried out. The resulting 3D elemental reconstructions delivered otherwise inaccessible information on the samples’ chemistry and structure (figure 1). Additionally, EDX-spectra of a long aged and electron-beam re-solidified (EBRS) sample were reconstructed channel by channel, resulting in a data cube, in which each voxel (volume pixel) contained an entire spectrum. Via a high angle annular dark field (HAADF) reconstruction and 3D masking, the voxels of the core and the different shell regions of a nano-precipitate were extracted and summed to obtain pure spectra of those volumes, thus overcoming the intrinsic limitations arising from the integrative character of analytical STEM. Comparisons of these results with data from high resolution STEM imaging, HAADF tomography and data from literature have led to the conclusion -opposed to previous believes [2]- that a self-limiting diffusion process takes place within the precipitates stabilizing their core-shell structure (figure 2).

 

 

[1] G. Haberfehlner et al, Nanoscale 6 (2014), p. 14563.

[2] E. Clouet et al. Nature Materials 5 (2006), p. 482.

 

 The authors thank the Austrian Cooperative Research Facility, the European Union (7th Framework Programme: ESTEEM2) and the Austrian Research Promotion Agency FFG (TAKE OFF project 839002) for funding.


Angelina ORTHACKER (Graz, Austria), Georg HABERFEHLNER, Johannes TAENDL, Maria Cecilia POLETTI, Bernhard SONDEREGGER, Gerald KOTHLEITNER
15:00 - 15:15 #5970 - MS01-OP206 Characterization of multicomponent Al alloys by TEM, HAADF-STEM, EELS and DFT.
Characterization of multicomponent Al alloys by TEM, HAADF-STEM, EELS and DFT.

Light, environmentally friendly and recyclable materials are of increasing importance, such as in the automotive industry where the age-hardenable Al-Mg-Si alloys are of high interest. By understanding better how microstructure responds to changed processing or composition, costs can be cut and macroscopic properties tailored for particular applications. For example, by reducing the solute amount a softer material will allow higher extrusion speeds, however, on the expense of material strength. Recently, it was shown how adding back a lower at% of ‘exotic’ elements like Li, Cu, Ag and Ge compensates such strength loss [1]. Age hardening is ascribed to dislocation resisting strain-fields set up in the aluminium during nucleation and growth of the metastable, nanoscale, semi-coherent precipitate needles in the three <100> Al directions [2]. The replacement elements change precipitate structure and growth conditions.

Precipitate statistics based on transmission electron microscopy (TEM) can elucidate how material strength is related to precipitate number densities, sizes and volume fractions; see example a bright field TEM micrograph in Fig. 1 (a) used for this purpose. The elemental contrast in probe Cs corrected high angle annular dark field scanning TEM (HAADF-STEM) greatly assists structural characterization of individual precipitate cross sections [3], enabling identification of precipitate type and the composition of individual atomic columns. See example of a β’’ precipitate in Fig. 1 (b).

            Because elements with similar atomic number (Z) express very small intensity differences, electron energy loss spectroscopy (EELS) elemental mapping has been applied to aid resolution. It became clear that EELS in combination with HAADF-STEM can resolve the hexagonal network of Si columns [4] well, see Fig. 2. It was also found that a significant proportion of the other atomic columns were mixed.

A pressing matter in material design is enhanced control with precipitate characteristics which vary strongly with alloy composition and processing. Density functional theory (DFT) simulations have a great potential for broadening the understanding concerning precipitate nucleation, growth and final microstructure, and how they are connected. Here we have investigated binding between solute atoms and to vacancies, along with volume misfits (see Fig. 4) in the Al lattice, in a venture to relate these parameters to precipitation.

 

References

 

[1] E. A. Mørtsell, C. D. Marioara, S. J. Andersen, J. Røyset, O. Reiso and R. Holmestad, Metallurgical and Materials Transactions A, vol. 46, no. 9, pp. 4369 - 4379, 2015.

[2] C. D. Marioara, H. Nordmark, S. J. Andersen and R. Holmestad, J. Mater. Sci., vol. 41, pp. 471 - 478, 2006.

[3] P. D. Nellist and S. J. Pennycook, "The principles and interpretation of annular dark-field Z-contrast imaging," Advances in Imaging and Electron Physics, vol. 113, pp. 147 - 203, 2000.

[4] S. J. Andersen, C. D. Marioara, R. Vissers, A. L. Frøseth and P. Derlet, in Proc. 13th Eur. Mocr. Congress (EMC) 2, 2004.


Eva MØRTSELL (Trondheim, Norway), Sigmund ANDERSEN, Calin MARIOARA, Jostein RØYSET, Jesper FRIIS, Randi HOLMESTAD
15:15 - 15:30 #6363 - MS01-OP212 Probing the heterogeneous nucleation interface of TiB2 in Al alloys.
Probing the heterogeneous nucleation interface of TiB2 in Al alloys.

The grain refinement of Al alloys has been extensively investigated for several decades both in industry and academia, not only through attempts at developing efficient grain refiners, but also with a view to achieve a better understanding of the grain refinement mechanism [1-7]. The addition of Al-Ti-B grain refiners (e.g. Al-5Ti-1B, wt. %) during the grain refinement of Al alloys has been widely investigated due to these compounds’ higher nucleation potency and wide potential for industrial applications. Various theories regarding the grain refinement mechanisms of Al-Ti-B refiners have been proposed [1-4]. Despite differences between all these theories, it is generally accepted that Ti has multiple roles within the Al melt. One role is to create an enriched Ti region leading to the formation of an Al3Ti monolayer necessary for the heterogeneous nucleation of Al on the stable boride substrates (TiB2) [5, 6]. The other role is to act as an effective growth restrictor factor [7]. It is the combined effects of the enhancement in nucleation site numbers and of the growth restrictions that result in the formation of desirable, small uniform equiaxed Al grains. It is well accepted that Ti is more likely to segregate to the TiB2 / a-Al interface affecting its structure and thereby the constitutional undercooling at the solid-liquid interface [5, 6]. The presence of the Al3Ti monolayer is still fervently disputed [5-7]. To resolve this disagreement, an atomic scale experimental investigation on the heterogeneous nucleation interface between TiB2 and α-Al in conventional castings (e.g. in alloys containing < 0.15 wt. % Ti that have not been melt spun) would be required.

This paper employs atomic scale high angle annular dark field (HAADF) scanning transmission electron microscopy (STEM) imaging and electron energy loss spectroscopy (EELS) to probe the heterogeneous nucleation interface of TiB2 in Al alloys, with a special focus on the partitioning of solute elements (Ti) to TiB2. A significant Ti partitioning to the whole surface of TiB2 was unambiguously observed in the commercial grain refiner (Al-5Ti-1B), as shown in Figure 1 and Figure 2. However, such prevalent Ti partitioning was not observed on the basal planes of TiB2 in Al-Si based alloys with high Si concentrations, which could be used to explain why Si poisoning occurs. In order to avoid / reduce the Si poisoning, CrB2 was added together with TiB2. In this case, a significant Cr partitioning to the whole surface of TiB2 was observed, which may minimize the lattice mismatch with Al and / or improve the stability of a Al3Ti monolayer on TiB2, as shown in Figure 3. This investigation provides a clearer picture about the heterogeneous nucleation interface between TiB2 and Al and further develops heterogeneous nucleation theory.

 

Jiehua Li gratefully acknowledges the financial support from the Major International (Regional) Joint Research Project (No. 51420105005) from China. The SuperSTEM Laboratory is the U.K. National Facility for Aberration-Corrected Scanning Transmission Electron Microscopy, supported by the Engineering and Physical Sciences Research Council (EPSRC).

[1]   M. Easton and D. StJohn, Metall. Mater. Trans. A., 30 (1999)1613.

[2]   T.E. Quested and A.L. Greer, Acta Mater., 53(2005)2683.

[3]   D. Shu, B.D. Sun, J. Mi and P.S. Grant, Acta Mater., 59(2011) 2135.

[4]   D.H. StJohn, M. Qian, M.A. Easton and P. Cao, Acta Mater., 59(2011)4907.

[5]   N. Iqbal, et al. Acta Mater., 53(2005)2875.

[6]   P. Schumacher and A.L. Greer, Mater. Sci. Eng. A, 178(1994)309.

[7]   M. Easton and D. StJohn, Metall. Mater. Trans. A., 30(1999)1625.


Jiehua LI (Leoben, Austria), Fredrik HAGE, Quentin RAMASSE, Peter SCHUMACHER
15:30 - 16:00 #8644 - MS01-S66 Atom probe tomography of early stage clustering in Al alloys.
Atom probe tomography of early stage clustering in Al alloys.

Nano-scaled early stage Si or Mg containing clusters in Al-Mg-Si alloys are experimentally extremely difficult to observe and atom probe tomography (APT) is the only technique to visualize and chemically measure these clusters today. Two examples for the technological importance of understanding clustering during natural aging in the Al-Mg-Si system are presented. First, a quenching procedure is shown to significantly alter the overall excess-vacancy concentration consequently altering solute clustering kinetics. Second, trace element additions are shown to trap excess-vacancies and hence to reduce the freely available vacancy concentration, which results in decreased solute clustering. The modification and understanding of early stage clustering is commercially important since it has strong implications on the strength evolution during industrial heat treatments. However, restrictions remain in achieving the ultimate quantification of such small solute aggregates by APT. Especially the surface migration of Si atoms is an open issue. However, an accurate adjustment of measurement and analysis parameters is known to minimize this problem. Nevertheless, clustering directly after quenching has not been possible to investigate because of the time required for sample preparation and sample transfer into the analysis chamber. Here we present a new strategy how the measurement of as-quenched conditions and very early stages of natural aging can be realized via APT. This can be accomplished via sample production at cryogenic temperatures to suppress diffusion. The shown procedure includes cryogenic focused ion beam (FIB) preparation and direct cryogenic transfer of fresh APT samples into the analysis chamber of an atom probe. Results on as-quenched and in-situ naturally aged Al-Mg-Si alloys are presented. Furthermore, the effect of FIB induced clustering at cryogenic temperatures is discussed.


Stefan POGATSCHER (Leoben, Austria), Phillip DUMITRASCHKEWITZ, Stephan S.a. GERSTL
Invited
16:00 - 16:15 #6041 - MS01-OP207 Crystallographic mapping in engineering alloys by scanning precession electron diffraction.
Crystallographic mapping in engineering alloys by scanning precession electron diffraction.

Crystallographic, compositional and morphological complexity in modern engineering alloys necessitates the use of sophisticated tools for multi-scale materials characterisation. Here, we develop scanning precession electron diffraction (SPED) for mapping crystalline phases in engineering alloys. SPED involves scanning the electron beam across the specimen and recording a PED pattern at each point by rocking a focused probe in a hollow cone above the specimen and de-rocking the beam back to the optic axis below. In this way, integrated diffraction intensities are recorded in the geometry of a conventional electron diffraction pattern [1]. A 4D dataset is obtained comprising a 2D PED pattern at each position in the 2D scan region, which can be analysed in a number of ways. Most simply, ‘virtual diffraction images’ can be formed by plotting the intensity of a sub-set of pixels in each PED pattern as a function of probe position to elucidate variations in the diffraction condition in a versatile post-acquisition scheme. Phase and orientation maps can also be formed by matching each PED pattern to a library of simulated patterns [2]. Here, we use this approach to determine the phases of precipitates in a nickel base superalloy and to identify orientation relationships existing between these phases. To do this we explore the orientation data in disorientation space where the rotation axis and angle between the two crystallographic bases is plotted (Figure 1). This automated analysis enabled treatment of multiple precipitates yielding a more representative view of the microstructure compared to conventional SAED methods.

 

New methods for strain mapping and phase characterisation based on machine learning were developed as part of this work to extract further insight into microstructural features. Strain maps were obtained by comparing each pattern to an unstrained reference and used to explore the strain distribution between precipitates in aluminium alloys (Figure 2). These SPED based strain maps offer a greater field of view as compared to methods based on atomic resolution imaging whilst retaining nm-scale spatial resolution. This yields unique insights such as the ability to map the interaction of strain fields associated with multiple precipitates, which can be seen in Figure 2. Phase characterisation, on the other hand, addresses the challenge of determining the chemistry and crystallography of phases in the microstructure that are often embedded and overlap in projection. We apply machine learning algorithms to SPED [3] and STEM-EDX [4] data acquired from the same region to achieve a correlated crystallographic and chemical characterisation of a Ti-Fe-Mo alloy with a nanometre scale lamellar microstructure (Figure 3). This approach learns component signals (spectra or patterns), which make up the particular dataset, together with their associated loading at each real space pixel. An efficient representation of the data is therefore found with minimal prior knowledge and signals from overlapping crystals are separated to achieve phase specific characterisation. Combined, the analysis approaches developed in this work provide comprehensive 'crystal cartography' of engineering alloys paving the way to better understanding of relationships between processing, structure and properties.

 

[1] R. Vincent, and P. A. Midgley, Ultramicroscopy, 1992, 53, 271-282

[2] E. Rauch et al, Zeitshrift fur Kristallographie, 2010, 225, 103-109

[3] A. S. Eggeman et al, Nature Communications, 2015, 6, 7267

[4] D. Rossouw et al, Nano Letters, 2015, 15, 2716-2720

 

The authors acknowledge: the ERC (291522-3DIMAGE), the European Commission (312483 - ESTEEM2), Rolls-Royce plc (EP/H022309/1), the EPSRC (EP/H500375/1),  BMWi (20T0813), and the Research Council of Norway (197405-NORTEM & 221714-FRINATEK).


Duncan N. JOHNSTONE (Cambridge, United Kingdom), Alexander J. KNOWLES, Robert KRAKOW, Sigurd WENNER, Antonius T. J. VAN HELVOORT, Randi HOLMESTAD, Howard STONE, Catherine RAE, Paul A. MIDGLEY
16:15 - 16:30 #5784 - MS01-OP201 Absolute quantification of nano-scale precipitates in steel using DualEELS.
Absolute quantification of nano-scale precipitates in steel using DualEELS.

Many steels rely on dispersion hardening with transition metal carbides or carbonitrides. TixV(1-x)CyNz precipitates are used in the high-Mn steels investigated in a recent project [1]. Consequently, the quantitative characterization of such precipitates is essential to understand the interdependency of alloy composition, thermomechanical treatment and final mechanical properties. 

In an earlier paper, the extraction of a precipitate spectrum image (SI) by the subtraction of matrix contribution was demonstrated using the capabilities of DualEELS [2]. The combination of closely spaced edges, weak edges and strong ELNES makes absolute quantification of such a precipitate SI challenging.

Thus absolute experimental cross-sections, derived from ceramic standards of TiC0.98. TiN0.88, VC0.83 and VN0.97, are used. A wedge shaped lamella of the standard is prepared by focused ion beam milling and an SI is recorded over a region where t/λ varies from 0.2 to 0.8. Using the procedures in [1], the low loss and high loss regions are spliced and the result Fourier logarithmically deconvolved to give a single scattering distribution.   At each energy loss, the resulting spectral intensities per unit energy, normalized by the zero loss intensity, are plotted against the product of the metal atoms per volume in the standard multiplied by the local thicknesses. The slope of this line is the absolute differential cross-section appropriate to the probe and collection angles used. An absolute value of λ is required to convert the t/λ map to a t map. This is measured using a needle shaped specimen.  Its t/λ is measured at one orientation and its t is measured from the image width after rotation through 90o, giving a direct measurement of λ.   The cross-sections for the individual edges can be separated out by fitting a suitable background before the non-metal edge and using its Hartree-Slater calculated cross-section to extrapolate it under the metal edge. The non-metal edge can then be corrected for the sub-stoichiometry.

The precipitate has the same rocksalt structure as the standards but is a quaternary. With the four standards, two cross-sections are obtained from each edge. In principle, a cross-section appropriate to the precipitate composition can be made for each edge using an appropriately weighted average. However, because the N and Ti edges are so close, the edges from TiN0.88 are difficult to separate and are not used here.  Thus the Ti cross-section from TiC0.98 and the N cross-section from VN0.97 are always used. Fortunately, the Ti metal fraction and the N non-metal fraction are only ~0.3 and so this causes no issues. To complete the standards for a multiple linear least squares (MLLS) fit to the precipitate SI, shapes for the background and the residual carbon and oxygen edges left after the matrix subtraction are required. The latter can be extracted from the average matrix spectrum.

Figure 1 shows the result of such an MLLS fit and the residuals are extremely low. The maps of the fitting coefficients for the four elements are shown in Figure 2. When normalized by the zero loss intensity, they give the number of each atom type per unit area. Using the volume of the unit cell appropriate to the composition, the “thickness” occupied by each atom type can be found. The sum of the Ti and V “thicknesses” is the precipitate thickness and a profile of this is shown in the lower part of Figure 3. Outside the precipitate, the values are essentially zero, as expected, and have low noise, indicating the sensitivity of the technique. The values of x, y and z can also be found and profiles of them are shown in the upper part of Figure 3.   The region outside the precipitate has been zeroed. The values are essentially constant across the precipitate and become noisy at the edge where the signals themselves are low and hence noisy.

 

References:

[1] G. Paul et al Erste Erkenntnisse zum Ausscheidungsverhalten von Mikrolegierungselementen in Hoch-Mangan Stählen; Ed. G. Petzow, (2012) Sonderbände der praktischen Metallographie, vol. 44

[2] J. Bobynko et al Ultramicroscopy 149 (2015) 9-20.

 

Acknowledgements:

EEC Funding from the RFCS Fund for PrecHiMn (RFSR-CT-2010-00018) and PreTiControl (RFSR-CT-2015-00013); Prof W. Lengauer (TU-Wien) for the provision of carbide and nitride standards; Dr G. Paul (thyssenkrupp Steel Europe AG) for the provision of the vanadium steel sample.


Ian MACLAREN (Glasgow, United Kingdom), Bianca SALA, Joanna BOBYNKO, Alan J. CRAVEN
Salle Prestige Gratte Ciel

"Wednesday 31 August"

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MS0-II
14:15 - 16:30

MS0: Nanoparticles: from synthesis to applications
SLOT II

Chairpersons: José CALVINO (Chairperson, Cadiz, Spain), Goran DRAZIC (Head of microscopy group) (Chairperson, Ljubljana, Slovenia), Christian RICOLLEAU (Professor) (Chairperson, C'Nano IdF, Paris, France)
14:15 - 14:45 #7887 - MS00-S64 Studying membrane proteins in intact cells using nanoparticle labels and liquid-phase electron microscopy.
Studying membrane proteins in intact cells using nanoparticle labels and liquid-phase electron microscopy.

Cells have receptor proteins in their plasma membranes ‘listening’ to chemical signals from the outside world. These signals consist of ligands, small molecules that bind specifically to a receptor. But how those signals are interpreted and lead to decisions is incompletely understood mainly on account of limitations of present analytical methods. It is typically extremely difficult to directly see how endogenously expressed individual proteins respond to ligand binding in the intact cell, which can lead, for example, to the formation of protein complexes triggering signaling processes. Much knowledge about cellular function has been obtained via biochemical methods but these analyze pooled material from many thousands of cells and the knowledge is thus based on population averages. But we need to look at the individual cell in order to understand the fundamentals of how a cell interprets a signal. Studying membrane proteins at the nanoscale in intact eukaryotic cells is now possible using liquid-phase scanning transmission electron microscopy (STEM) [1, 2]. The key step is to specifically label the proteins of interest in a one-to-one ratio with small probes combined with nanoparticles, for example, gold nanoparticles or quantum dots. Cells in liquid are then placed in a microfluidic chamber enclosing the sample in the vacuum of the electron microscope, and are imaged with STEM. It is not always necessary to enclose the cells in the microfluidic chamber. For some studies, it is sufficient to obtain information from the thin outer regions of the cells, and those can be imaged with high resolution using environmental scanning electron microscopy (ESEM) with STEM detector [3]. Liquid-phase STEM was used to explore the formation of the epidermal growth factor HER2 at the single-molecule level in intact SKBR3 breast cancer cells in liquid state [4]. HER2 is a membrane protein and plays an important role in breast cancer aggressiveness and progression. Data analysis based on calculating the pair correlation function from individual HER2 positions revealed remarkable differences in functionality between different cellular regions, and between cells with possible relevance for studying cancer metastasis and drug response.

 

Acknowledgements: We thank E. Arzt for his support through INM.  Research in part supported by the Leibniz Competition 2014.

 

References:

[1]     de Jonge, N., Peckys, D.B., Kremers, G.J., Piston, D.W., Proc. Natl. Acad. Sci. 106, 2159-2164, 2009.

[2]     de Jonge, N., Ross, F.M., Nat. Nanotechnol. 6, 695-704, 2011.

[3]     Peckys, D.B., et al., Sci. Rep. 3, 2626: 1-6, 2013.

[4]     Peckys, D.B., Korf, U., de Jonge, N., Sci. Adv. 1, e1500165, 2015.


Niels DE JONGE (Saarbrücken, Germany), Diana PECKYS
Invited
14:45 - 15:00 #5945 - MS00-OP183 Correlative In situ imaging and spectroscopy of a bimetallic PdCu catalyst using Synchrotron and Electron Optical Beam Lines.
Correlative In situ imaging and spectroscopy of a bimetallic PdCu catalyst using Synchrotron and Electron Optical Beam Lines.

Supported metal nanoparticle catalysts are key materials for diverse conversion processes and are widely used throughout the chemical industry. Bimetallic catalysts frequently offer improvements in activity, selectivity, and stability compared to their monometallic equivalents [1]. The nanoparticle (NPs) distributions are generally not homogeneous and not all NP morphologies show equal activity for a given reaction [2]. Characterisation of the elemental distribution and oxidation state is therefore of great importance for understanding the alloying and segregation phenomena in bimetallic catalysts and hence optimising the performance of such materials. However, such characterisation usually requires the sample to be imaged at high vacuum and room temperature and the chemical reactions of interest rarely occur at such benign conditions. Therefore, we have conducted in situ environmental TEM study [3-4] with complementary bulk analysis using temperature programmed reduction (TPR) and in situ X-ray Absorption Near Edge Spectroscopy (XANES) to gain in depth insights into the chemical and morphological changes experienced by TiO2 supported PdCu nanoparticle catalysts when exposed to relevant elevated temperature in 1 bar reducing atmosphere. Recent progress with environmental cell and microscope design has enabled us to follow the evolution of bimetallic NPs using in situ elemental imaging capabilities [5-6].
The PdCu catalyst was prepared by incipient wetness co-impregnation of copper and palladium nitrates on titania followed by calcination to yield the unreduced form of the catalyst. Conventional STEM-XEDS elemental mapping indicates that the catalyst comprises ~10 nm large Pd containing particles with smaller ~1 nm size Cu clusters dispersed across the titania support. The XANES spectra of the calcined material (Figure 1) indicate that both Pd and Cu are initially present as oxides. The Temperature Control Reduction (TPR)-XANES of the Pd (Figure 1a) shows complete reduction to Pd(0) after room temperature hydrogen treatment and that the metal remains Pd(0) throughout the remaining temperature points. By contrast, the Cu-K edge reduction profile (Figure 1b) shows a small degree of reduction at lower temperatures, likely due to Cu associated with the Pd clusters, and that the sample contains both Cu oxide and metallic Cu up to 250 °C. Figure 2 shows XEDS elemental mapping of TiO2 supported PdCu catalysts. After introducing a reducing H2 atmosphere and heating to 250 °C, NPs start to be resolvable in the Cu distribution visible as local regions of higher intensity (Figure 2e-h). At 550 °C, where TPR-XANES indicates that copper oxides are no longer present, Cu NPs are formed with Pd particles generally containing Cu but at varying concentrations. The heterogeneity of the localized composition is striking and in some cases Janus NPs are formed with various degrees of phase separation between the two metals (Figure 2j-l).
In summary, correlative studies on a bimetallic PdCu catalyst using in situ high temperature gaseous environmental conditions in both synchrotron and electron-optical instruments has allowed the identification of the processes by which the active phases of these catalysts evolve. This has provided invaluable insights to the complementary bulk XANES and TPR characterisation including the subtle changes in the Cu-K edge. This correlative approach has enabled an unambiguous identification of the states of the catalysts and helped to elucidate the segregation phenomenon which gives rise to their properties.

References

[1] J. H. Sinfelt, Acc. Chem. Res. 10, (1977) p. 15.
[2] P. J. Dietrich et al., ACS Catal. 4, (2014) p. 480
[3] S. Giorgio et al, Ultramicroscopy 106, (2006), p. 503
[3] J. F. Creemer et al, Ultramicroscopy 108, (2008), p. 993
[4] N. J. Zaluzec et al, Microsc. Microanal. 20, (2014), p. 323
[5] E. Prestat et al, Microsc. Microanal. 21 (2015), p. 247-248
[6] Research supported by EPSRC Grants #EP/G035954/1 and EP/J021172/1, the DTR Agency Grant HDTRA1-12-1-003, the BP Innovation Fund and ICAM project at Manchester and the U.S. DoE, Office of Science, DE-AC02-06CH11357 at Argonne National Laboratory


Eric PRESTAT (Manchester, United Kingdom), Matthew A. KULZICK, Paul J. DIETRICH, Eric DOSKOCIL, Matthew SMITH, M. Grace BURKE, Sarah J. HAIGH, Nestor J. ZALUZEC
15:00 - 15:15 #6307 - MS00-OP188 Local Information Powers Heterogeneous Catalysis Research: TEM Investigation of Industrial Relevant Cu/ZnO/Al2O3 Catalysts for Methanol Synthesis.
Local Information Powers Heterogeneous Catalysis Research: TEM Investigation of Industrial Relevant Cu/ZnO/Al2O3 Catalysts for Methanol Synthesis.

In a simplified picture a heterogeneous catalyst can be described as a high energy material, which is composed of two important parts: bulk and surface. The bulk is defined by a certain crystal and electronic structure as well as defect concentration, and reflects the real structure of the catalyst. It is responsible for the formation and stabilization of the active surface. Although physical and chemical information on the real and surface structure can be obtained by integral methods, important local fluctuations from the ideal structure, which are essential for the catalytic performance, in the catalyst composition may be overlooked.1 This highlights the significance of transmission electron microscopy (TEM) as the tool for the local description of the nano- and/or mesoscale of heterogeneous catalysts.

Here, we focus on a transmission electron microscopic (TEM) description of the local nano- and mesoscale of industrial relevant Cu/ZnO/Al2O3 catalyst for methanol synthesis. Methanol, one of the most important industrial chemicals, is produced from syngas (CO, CO2, H2) at high pressure (50-80 bar) and elevated temperature (240-280 °C) and is considered as a prospective key-compound for chemical energy and hydrogen storage. The working mechanisms of this industrial methanol catalyst have been investigated extensively.2 However, its actual active phase is still debated controversially. On the one hand, the catalytic odyssey may be caused by material, pressure and time gaps, which often do not mirror industrial relevant conditions. On the other hand, the diversity of results indicates the difficulty of investigating and understanding this complex catalyst system, in particular due to the lack of visual local information.

Our local observations tackle a detailed description of the mesostructure of the catalyst, the real structure of Cu nanoparticles and the formation of a special polymorph of layered ZnO on top of the Cu nanoparticles after reductive activation on industrial relevant ternary Cu/ZnO/Al2O3 catalyst.1b In addition, we will highlight the temperature, gas and time dependent evolution of this metastable layered ZnO polymorph from minutes to months (Figure 1).3

In conclusion, the results demonstrate the power of local TEM investigation in heterogeneous catalysis research. In combination with complementary integral data, they allow a detailed understanding of the system, which would be otherwise hard to obtain. The findings illustrate that methanol synthesis can be considered as an interface mediated process between Cu and ZnO.

References

(1)           (a) Lunkenbein, T.; Girgsdies, F.; Wernbacher, A.; Noack, J.; Auffermann, G.; Yasuhara, A.; Klein-Hoffmann, A.; Ueda, W.; Eichelbaum, M.; Trunschke, A.; Schlögl, R.; Willinger, M. G. Angewandte Chemie International Edition 2015, 54, 6828(b) Lunkenbein, T.; Schumann, J.; Behrens, M.; Schlögl, R.; Willinger, M. G. Angewandte Chemie International Edition 2015, 54, 4544(c) Holse, C.; Elkjær, C. F.; Nierhoff, A.; Sehested, J.; Chorkendorff, I.; Helveg, S.; Nielsen, J. H. The Journal of Physical Chemistry C 2015, 119, 2804.

(2)           Behrens, M.; Studt, F.; Kasatkin, I.; Kühl, S.; Hävecker, M.; Abild-Pedersen, F.; Zander, S.; Girgsdies, F.; Kurr, P.; Kniep, B.-L.; Tovar, M.; Fischer, R. W.; Nørskov, J. K.; Schlögl, R. Science 2012, 336, 893.

(3)           Lunkenbein, T.; Kandemir, T.; Girgsdies, F.; Thomas, N.; Behrens, M.; Schlögl, R.; Frei, E. Angewandte Chemie International Edition 2016, to be submitted.

 


Thomas LUNKENBEIN (Berlin, Germany), Elias FREI, Julia SCHUMANN, Malte BEHRENS, Marc Georg WILLINGER, Robert SCHLÖGL
15:15 - 15:30 #6593 - MS00-OP192 Synthesis and Characterization of Ag2Se-Based Hybrid and Ternary Semiconductor Nanocrystals with potential termoelectric applications.
Synthesis and Characterization of Ag2Se-Based Hybrid and Ternary Semiconductor Nanocrystals with potential termoelectric applications.

Ag2Se is a heavy-metal free, low band gap semiconductor that is currently attracting much attention in several fields. Remarkably, its high Seebeck coefficient and its low thermal conductivity have made of Ag2Se a definitely promising thermoelectric material. Considering that material nanostructuration often entails a significant increase of the ZT figure of merit with respect to the bulk, the synthesis and study of Ag2Se nanocrystals and of its nanostructured derivatives seems exciting and definitely deserves an effort.

With regard to the synthesis of metal-Ag2Se hybrid nanocrystals, very few examples are currently available in the literature and none of them has addressed their potential applications.

The aim of this work is studying the ternary Au-Ag-Se system at the nanoscale in order to figure out appropriate synthetic protocols for the controlled growth of hybrid and compositionally-controlled Ag2Se-based nanocrystals and perform an in-depth structural characterization of the materials obtained while also studying the thermoelectric potential of this new ternary nanosystem.


Pau TORRUELLA BESA (Barcelona, Spain), Mariona DALMASES, Víctor FERNÀNDEZ-ALTABLE, Andreu CABOT, Maria IBÁÑEZ, Jordi LLORCA, Lluís LÓPEZ-CONESA, Gemma MARTÍN, Sónia ESTRADÉ, Francesca PEIRÓ
15:30 - 15:45 #5856 - MS00-OP182 Understanding the Self-Assembly of a Janus-type POM–POSS Co-Cluster from low-dose STEM.
Understanding the Self-Assembly of a Janus-type POM–POSS Co-Cluster from low-dose STEM.

Understanding the self-assembly process of novel cluster-assembled materials (CAMs) is a prerequisite to optimize their structure and function. Janus-type molecules are of particular interest as the provide the possibility to combine dissimilar properties. In this study, two kinds of unlike organo-functionalized inorganic clusters (polyoxometalate: POM, polyhedral oligomeric silsesquioxane: POSS) have been covalently linked by a short organic tether to form a dumbbell-shaped Janus co-cluster. Their supramolecular assembly in nanocrystals has been analyzed in 2D and 3D using low-dose HAADF-STEM techniques to understand the assembly process based on the structure and the structural variations. The results have been compared to coarse grained molecular simulations.

STEM tomography reveals a honeycomb superstructure constructed by hexagonal close-packed cylinders of the smaller POSS cluster and an orderly arranged framework of the larger POM cluster either in single or bicrystals (Fig. 1). A more detailed analysis (Fig. 2) reveals a bilayer arrangement of the POM-POSS clusters within the hexagonal framework as the favorable structural motive. However, locally significant structural variations are observed, both in terms of the POM neighbor coordination (Fig. 2E) as well as for the tessellation of the supercell arrangement (Fig. 2F). This self-organization demonstrates two synergistic effects controlling the structure formation: phase separation of the two immiscible blocks favoring a hexagonal framework, while crystallization or at least ordered packing of the POM clusters favors an extended bilayer leading to a geometrically frustrated structure. Close to the growth surface, this frustration leads to large structural variations with an increasing number of clusters in the basic motive, while it becomes more defined close to the core of the nanoparticles (Fig. 2D).

A series of coarse grained molecular simulations reveals that the size asymmetry of the two clusters has a significant effect on the self-assembled structure. Ratios between 1.5 and 1.8 lead to hexagonal structures in good agreement with the experimental results. This understanding opens up new opportunities for generating novel CAMs for advanced applications.

 

References

(1)        C. Ma et al, Angew. Chemie. Int. Ed. Engl, 2015, 54, 15699-15704.

 

Acknowledgement

We gratefully acknowledge the financial support by the National Natural Science Foundation of China for grants (21174080, 21274069, 21334003, and 21422403), the Open Research Fund of State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry and the Karlsruhe Nano Micro Facility (KNMF) for access to the electron microscopic equipment.


Christian KUEBEL (Eggenstein-Leopoldshafen, Germany), L.t. YAN, Wei WANG
15:45 - 16:00 #6671 - MS00-OP193 Electron microscopy investigations of cation exchange in colloidal PbSe/CdSe nanocrystals.
Electron microscopy investigations of cation exchange in colloidal PbSe/CdSe nanocrystals.

Cation exchange is a very powerful method for creating heterogeneous nanocrystals (NCs), such as core-shell or rod-tip nanostructures. Here we present an overview of the experimental and simulation efforts made to elucidate the atomic mechanism underlying cation exchange in PbSe/CdSe nanocrystals.

When pure PbSe nanorods are in a colloidal solution, adding Cd precursors molecules to the solution will lead to the exchange of Pb ions by Cd ions, resulting in PbSe/CdSe core-shell nanorods. High-resolution high angle annular dark field scanning transmission electron microscopy (HAADF-STEM) analysis of partly exchanged PbSe/CdSe core-shell nanorods showed clearly defined interfaces in the nanorods, dominated by PbSe-rocksalt/CdSe-zinc blende {111}/{111} crystal planes [1]. However, from an atomic-resolution 3D reconstruction of the PbSe core within such a core-shell nanorod [2], it became clear that the interfaces are not as straight and defect-free as they appear to be when considering only 2D projections.

The opposite process of Cd-for-Pb cation exchange was recorded in real time when PbSe-tipped CdSe nanorods were heated in-situ in the transmission electron microscope [3]. Stills of a movie recorded in HAADF-STEM mode at a temperature of 180 °C are shown in Figure 1. Here the PbSe domains at the tips grew at the expense of the CdSe domains, a process driven by the evaporation of Cd (or Cd molecular complexes), as confirmed by energy-dispersive X-ray spectroscopy (EDX) chemical mapping. It became clear that cation exchange is a very dynamic process whereby excess Pb cations were consumed from Pb-oleate complexes that were covering the surface of the NCs.

Finally, very recently a force-field molecular dynamics (FF-MD) simulation study was conducted which elucidates the role of both cation and anions in the underlying physical mechanism [3,4]. Figure 2 shows the result of a simulation whereby two types of interfaces are present in the nanorods, exhibiting very different defectiveness of the atomic planes at both sides of the interfaces.

Future opportunities for studying cation exchange, including Liquid Cell investigations and performing cation exchange of 2D of 3D assemblies of nanocrystals, are discussed as well.

References

[1] M. Casavola, M.A. van Huis, S. Bals, K. Lambert, Z. Hens, D. Vanmaekelbergh, Chemistry of Materials 2012, 24, 294–302.

[2] S. Bals, M. Casavola, M.A. van Huis, S. Van Aert, K.J. Batenburg, G. Van Tendeloo, D. Vanmaekelbergh, Nano Letters 2011, 11, 3420-3424.

[3] A.O. Yalcin, Z. Fan, B. Goris, W.-F. Li, R.S. Koster, C.-M. Fang, A. Van Blaaderen, M. Casavola, F.D. Tichelaar, S. Bals, G. Van Tendeloo, T.J.H. Vlugt, D. Vanmaekelbergh, H.W. Zandbergen, M.A. van Huis, Nano Letters 2014, 14, 3661-3667.

[4] Z. Fan, L.-C. Lin, W. Buijs, T.J.H. Vlugt, M.A. van Huis, accepted for publication.


Anil YALCIN, Bart GORIS, Zaochuan FAN, Thijs VLUGT, Alfons VAN BLAADEREN, Daniel VANMAEKELBERGH, Sara BALS, Marijn VAN HUIS (Utrecht, The Netherlands)
16:00 - 16:15 #6673 - MS00-OP194 Combined characterization of cobalt aggregates by HAADF-STEM electron tomography and Anomalous X-ray scattering.
Combined characterization of cobalt aggregates by HAADF-STEM electron tomography and Anomalous X-ray scattering.

Fischer-Tropsch synthesis (FTS) is a well-known process, which permits to produce clean fuels from a synthetic gas (CO+H2). The syngas can be obtained from natural gas or by gaseification of lignocellulosic biomass, providing an interesting environment-friendly alternative to oil. It is generally admitted that the catalytic properties (activity and selectivity) of the cobalt-based catalysts used for the FTS depend on the size distribution of the cobalt nanoparticles [1]. However, in high-loaded catalysts, nanoparticles tend to form large aggregates, modifying the quantity of accessible active sites. Their impact of the catalytic properties is still uncertain.

The aim of this study is thus to lead to a detailed description of the multi-scale structure of Cobalt-based catalysts. A multi-technique approach is proposed combining transmission electron microscopy in different modes (dark field, HAADF-STEM and electron tomography) and Anomalous Small-Angle X-Ray Scattering (ASAXS). The project focuses on two Co-based catalysts, supported on alumina and containing 15%wt Co. After impregnation, the catalyst was dried and calcined in air. The first sample is the oxide catalyst. The second one is obtained after reduction under pure H2 flow.

BF-TEM, DF-TEM and HAADF-STEM were used to characterize both the Co crystallites size and the aggregates size distribution. Electron tomography acquisitions were performed in HAADF-STEM mode [4] in order to obtain a 3D visualization of the Co aggregates. Quantitative analysis of the segmented aggregates was performed.

The ASAXS technique is yet little used for the characterization of the active phases of catalysts [2, 3]. Hence, ASAXS experiments have been performed on SWING Beamline of SOLEIL Synchrotron, slightly below the Co K-edge at 3 different energies. The exploitation of the ASAXS data was successfully performed by means of using X-Ray scattering theory, and allowed calculating the size distribution of the spherical nanoparticles and aggregates.

First, the complementarity between ASAXS and electron tomography techniques has been demonstrated: they bring new insights on the multi-scale structure of Cobalt-based catalysts.

The ASAXS technique has permitted to characterize simultaneously the size distribution of the nanoparticles and the aggregates, from a few angstrom scale to a scale of several hundreds of nanometers (Figure 1). Size distribution of the aggregates are in good agreement with HAADF-STEM results (figure 3).

Secondly, the advantage of the electron tomography has been highlighted. Electron tomography gives access to a unique 3D visualization of the aggregates (see figure 2). It has revealed that the morphology of the aggregate is changing during reduction: in the oxide state, they are compact, even if internal porosity is observed, whereas in the reduced state, they present a porous sponge-like structure, more or less compact. Calculation of porous volume, pore size and mean size of walls (nanoparticles forming the aggregates) can also be carried out, for a quantitative comparison.

Even if the sintering of the particles is often evoked during the reduction step, it appears that another phenomenon occurs at the aggregate scale : ASAXS and electron tomography show that, contrary to their size, the internal density of the aggregates does evolve. Indeed, the aggregates of the reduced sample are airier with a larger porosity. Is it due to the change of the crystallographic structure from Co3O4 to Co0 or to internal stresses that break and open the aggregate structure ?

Aknowledgments :

Electron tomography acquisitions were partially performed at « Centre Technologique des Microstructures de l’Université Lyon I». The authors thank X. Jaurand for his support.

References :

[1] G.L. Bezemer, et al., Journal of the American Chemical Society, 128 (2006).

[2] H. Brumberger, et al., Journal of Applied Crystallography, 38 (2005).

[3] P. Georgopoulos, J.B. Cohen, Journal of Catalysis, 92 (1985).

[4] I. Arslan, et al., Journal of the American Chemical Society, 130 (2008).

[5] P. Munnik, P.E. de Jongh, K.P. de Jong, Journal of the American Chemical Society, 136 (2014).

[6] P. Munnik, et al., ACS Catalysis, 4 (2014).


Anne-Sophie GAY (Solaize), Séverine HUMBERT, Anne-Lise TALEB, Véronique LEFEBVRE, Charline DALVERNY, Guillaume DESJOUIS, Thomas BIZIEN
16:15 - 16:30 #4672 - MS00-OP179 Formation of bimetallic clusters in superfluid helium nanodroplets analysed by atomic resolution electron tomography.
Formation of bimetallic clusters in superfluid helium nanodroplets analysed by atomic resolution electron tomography.

Metallic nanoparticles consisting of a few thousand atoms are of large interest for potential applications in different fields such as optics, catalysis or magnetism. Structure, shape and composition are the basic parameters responsible for their properties. To reveal these parameters in three dimensions at the nanoscale, electron tomography is a powerful tool. Advancing electron tomography to atomic resolution in an aberration-corrected transmission electron microscope is challenging though [1–3], and the ultimate goal of resolving position and type of each single atom inside a material remains elusive.

Here we demonstrate atomic resolution electron tomography on silver/gold core/shell nanoclusters grown in superfluid helium nanodroplets [4,5] (Figure 1a). Superfluid helium droplets represent a versatile, novel tool for designing such nanoparticles, allowing fine-tuned synthesis of pure or composite clusters for a wide range of materials. Using ultra-high vacuum conditions and getting on without solvents or additives compared with chemical synthesis, the method delivers high purity materials, which can be well controlled in terms of size and composition.

Analytical TEM investigations reveal smaller clusters mainly consisting of a single silver core, surrounded by a gold shell, whereas larger clusters contain two or more silver grains embedded in a gold matrix [6] (Figure 1b&c). The measured transition between single- and double-core growth appears at a cluster size of about 5000 atoms and similar values are found when cluster agglomeration inside the He-droplet is simulated for the used process parameters [7] (Figure 1d).

One cluster with two silver cores was analysed three-dimensionally for its atomic structure, shape and composition [6] (Figure 2). We identify gold- and silver-rich regions in three dimensions and we are able to estimate atomic positions inside the nanocluster. Two silver cores are visible as darker regions, separated by gold with a minimal thickness of 2–3 atomic layers.  The cluster appears in a highly symmetric multiply twinned structure, shaped roughly as an icosahedron, which is structurally modified due to binding of the cluster to the surface.

This work demonstrates estimation of atomic positions within nanoparticles in 3D without any prior information, while at the same time information about the local elemental composition is retrieved at near-atomic resolution. Our results give insight into the growth and deposition process of composite nanoclusters created in superfluid helium droplets. This understanding will allow fine-tuning of process parameters for optimizing nanoparticle properties.

 

[1]          M.C. Scott et al., Nature. 483: 444–447 (2012).

[2]          B. Goris et al., Nat. Mater. 11: 930–935 (2012).

[3]          C.-C. Chen et al., Nature. 496: 74–77 (2013).

[4]          A. Boatwright et al., Faraday Discuss. 162: 113–124 (2013).

[5]          P. Thaler et al., Phys. Rev. B. 90: 155442 (2014).

[6]          G. Haberfehlner  et al., Nat. Commun. 6: 8779 (2015).

[7]          P. Thaler et al., J. Chem. Phys. 143: 134201 (2015).

 

This research has received funding from the European Union within the 7th Framework Program (FP7/2007-2013) under Grant Agreement no. 312483 (ESTEEM2) and from the European Commission and the Styrian Government within the ERDF program (FP7/2007-2013). We gratefully acknowledge support from NAWI Graz.


Georg HABERFEHLNER (Graz, Austria), Philipp THALER, Daniel KNEZ, Alexander VOLK, Ferdinand HOFER, Wolfgang E. ERNST, Gerald KOTHLEITNER
Salle Gratte Ciel 1&2

"Wednesday 31 August"

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IM6-I
14:15 - 16:30

IM6: Quantitative Diffraction
SLOT I

Chairpersons: Tatiana GORELIK (Chairperson, Mainz, Germany), Damien JACOB (Chairperson, UMET, Lille, France)
14:15 - 14:45 #8327 - IM06-S46 Nanoscale Crystal Cartography using Scanning Electron Diffraction.
Nanoscale Crystal Cartography using Scanning Electron Diffraction.

Electron diffraction, and its use to study the nanoscale crystallography of materials, has had something of a renaissance in recent years. The ease with which electron diffraction patterns can now be acquired with modern instrumentation, coupled with developments in electron optical techniques, faster detectors and sensitive cameras have all contributed to microscopists looking again at what novel information electron diffraction can provide. In this presentation, we will focus on scanning electron diffraction (SED), whereby electron diffraction patterns are acquired at each real space pixel, so that following a raster scan across a region of interest, a rich 4D data set is obtained that contains a wealth of information about the phases present, their orientation, defective regions and strain. Automation of pattern acquisition and sensitive recording devices also enable very fast data collection and open new avenues for recording unique crystallographic data from highly beam-sensitive materials [1]. SED can also be applied whilst precessing the beam [2] and this combination, known, in general, as scanning precession electron diffraction (SPED), which may lead to more accurate measurements of local crystallography through access to higher order reflections and greater sensitivity to in-plane rotations, strain, etc.

 

Figure 1 shows an example of SED analysis, with and without precession, considering the effects of strain brought about by the addition of Sb in a GaAs nanowire, whose wire axis is parallel to the axis in the zinc blende structure ([0001] in wurtzite). Fig 1 (a) shows a series of ‘virtual dark field’ (VDF) images created by plotting the intensities of particular reflections, from an unprecessed pattern series, as a function of real space position. The contrast seen in the VDF resembles the contrast seen in conventional DF images showing changes in intensity brought about through planar bending in the doped region. In Fig 1(b) the strain components are plotted, derived from measuring the distortions of precessed diffraction patterns relative to a reference (undistorted) region well away from the Sb region. The magnitude and direction of the strain is as expected from finite element modelling.

 

In reality, any 2D crystallographic map such as those shown in Figure 1, is really a projection of a 3D structure. As such, in order to be sensitive to changes in strain and orientation in 3 orthogonal directions, it becomes necessary to tilt the sample and ultimately to record a full tilt series of crystallographic information so that, using tomographic methods, a complete 3D reconstruction of the local crystallography is made possible [3]. Recently, we have combined SPED and tomography to reconstruct both real space morphology and orientation maps in three dimensions, to interrogate the local crystallography of sub-volumes of material and to determine, for example in the case of a Ni-base superalloy, a novel 3D orientation relationship between a matrix phase and an embedded carbide particle, see Figure 2. To extend this to map strain, as illustrated in Fig 1 (b), into 3D is considerably more challenging as such ‘tensor tomography’ demands a new approach to recover, in general, six strain components at every voxel. We will discuss progress in this regard and show how a model-fitting approach may be the best route forward [4].

 

[1] E.F. Rauch and L. Dupuy, Arch. Metall. Mater. 50, 87–99 (2005).

[2] P.A. Midgley and R. Vincent, Ultramicroscopy, 53, 271–282 (1994).

[3] A.S. Eggeman, R. Krakow and P.A. Midgley, Nature Commun. 6, 7267 (2015).

[4] The authors acknowledge the many people who have contributed to this work including R. Leary. R. Krakow, J. Barnard, J.M. Thomas, A. van Helvoort, Z. Saghi, M. Benning. C. Schoenlieb, J. Ma, O. Messe, C. Rae, A. Knowles, H. Stone, A. Ferrari, S. Hodge, U. Sassi, D. de Fazio. 

 

The authors acknowledge funding from the Royal Society and from the ERC grant 291522-3DIMAGE. DJ acknowledges an an Associateship from the Cambridge NanoDTC.


Paul MIDGLEY (Cambridge, United Kingdom), Duncan JOHNSTONE, Sung-Jin KANG, Alex EGGEMAN
Invited
14:45 - 15:15 Electron ptychography: what we can do with 'redundant' data. John RODENBURG (Invited speaker, Sheffield, United Kingdom)
Invited
15:15 - 15:30 #6385 - IM06-OP120 Deformation mapping in a TEM: Dark Field Electron Holography, Nanobeam Electron Diffraction, Precession Electron Diffraction and GPA compared.
Deformation mapping in a TEM: Dark Field Electron Holography, Nanobeam Electron Diffraction, Precession Electron Diffraction and GPA compared.

The properties of nanoscaled materials can be changed by applying strain and as such there is an interest in the accurate measurement of deformation with nm-scale resolution. This was until recently considered as a difficult problem. However, the last ten years has seen a great deal of development in techniques that can be used to measure deformation with the required resolution [1,2]. Today there are many different approaches which can be used to recover valuable information about the deformation. Each of these techniques has strengths and weaknesses and requires different set ups in the electron microscope [2]. In this presentation we will present dark field electron holography, nanobeam electron diffraction (NBED), precession diffraction (NPED) and the geometrical phase analysis (GPA) of TEM and high angle annular dark field (HAADF) scanning transmission electron microscopy (STEM) images. We will then discuss which technique is most suitable for different types of materials problems and benchmark their performance with respect to the accuracy of the measurements, precision and spatial resolution.

Figure 1(a) shows a HAADF STEM image of a 100-nm-thick Si test specimen containing 10-nm-thick SiGe layers with different Ge concentrations. As the specimen has been grown epitaxially we expect no deformation to be measured in the ex direction. However, due to the expanded lattice parameter of the SiGe layers relative to the Si reference, tensile deformation is expected in the ez direction. Figure 1 shows deformation maps that have been acquired by (b) GPA of HAADF images (c) dark holography and (d) precession diffraction. These are compared to finite element simulations that are shown in Figure 1(e). These results reveal that all of the different techniques provide accurate measurements of the deformation. Figure 2(a) shows a HAADF STEM image of a SiGe test device structure with a gate length of 35 nm. Finite element simulations showing the expected deformation in the struture is shown in Figures 2(b) and (c). Deformation maps are shown in Figure 2(d) and (e) for precession diffraction, (f) and (g) for dark holography and (h) and (i) for GPA of HAADF STEM images [4]. Again, accurate measurements of the deformation are made, but the precision and spatial resolution depends on the experimental technique that has been used. As well as presenting state of the art results from a range of strained materials we will highlight improvements that are required for all of the different techniques in order to optimise their performance and provide the best possible measurements of deformation.

Acknowledgements : These experiments have been performed on the platform nanocharacterisation (PFNC) at Minatec. The work has been funded by the ERC Starting Grant 306365 « Holoview ».


References
[1] M. Hytch et al. Ultramicroscopy 74, 131–146 (1998)
[2] M. Hytch et al. Nature 453, 1086-1089 (2008)
[3] D. Cooper et al. Micron 80, 145-165 (2016)
[4] D. Cooper et al. Nano letters 15, 5289-5294 (2015)


David COOPER (Grenobles), Nicolas BERNIER, Jean-Luc ROUVIERE
15:30 - 15:45 #6564 - IM06-OP121 The use of Correlation Coefficient maps to enhance visibility of internal structure for nanocrystalline thin foils.
The use of Correlation Coefficient maps to enhance visibility of internal structure for nanocrystalline thin foils.

Orientation and phase are routinely determined with the automated ACOM tool developed for Transmission Electron Microscopes [1]. With this attachment, the beam is scanned over the area of interest and all the diffraction patterns are collected and kept in memory for further off-line analysis. The present work concerns a novel approach that makes use of the memorized data to compute a structural image of the sample through a straightforward post-processing algorithm that consists in weighting the similarities between the neighbor diffraction patterns [2].

 

The successive diffraction patterns acquired within a given crystal are anticipated to be nearly identical, while an abrupt change is expected when the beam is crossing a grain or a phase boundary. Plotting the value of a correlation coefficient that compares the intensities of every pixels of the neighbor diffraction patterns produces a contrasted picture in which all structural features that modify the local diffracting conditions are highlighted.

 

Fig. 1 gives a typical example where grain boundaries for a polycrystalline sample are retrieved. Of particular interest is the fact that the grain boundary contrasts are directly related to the boundary inclination. Indeed, the sharp changes in diffraction patterns expected for boundaries parallel to the electron beam are associated to a strong contrast. A weak and extended contrast indicates qualitatively a gradual modification of the diffracting signal as expected for inclined boundaries. Quantitative evaluation needs different processing [3].

 

The correlation coefficient is sensitive to any structural component that modifies the diffracting conditions. This is valid for dislocations, too. Two of them appear in the upper grain in figure 1.

Moreover, the correlation coefficient is less sensitive to non-visibility conditions. This is because it is constructed on the difference between the intensities of all reflections including the faint ones. In particular, if the sample is in a so-called two beam condition, the main reflection g remains unchanged when the beam is crossing a dislocation line whose Burgers vector is normal to g. This reflection will be dominant in the bright field image and the dislocation will not be visible. Being constant, g will not contribute to the correlation coefficient. By contrast faint reflections that always exist in the diffraction pattern - even in two beam conditions - will be affected by the distortion around the defect line. Figure 2 compares the virtual bright-field image and the correlation coefficient map for a deformed ferritic steel sample. The thin foil is slightly bended (less than 2°, mainly from left to right) so that the contrast conditions are not homogeneous in the micrograph and part of the structural information is missing. The correlation coefficient is less sensitive to the exact illumination conditions and consequently additional dislocations appear in the map.

 

 

[1] E.F. Rauch, M. Véron, Mater. Charact. 98 (2014) 1–9.

[2] Á.K. Kiss, E.F. Rauch, J.L. Lábár, Ultramicroscopy 163 (2016) 31–37.

[3] Á K. Kiss E F. Rauch B Pécz J Szívós and J L. Lábár, Microsc Microanal 21(2015) 422–435


Edgar RAUCH (ST MARTIN D'HERES CEDEX), Akos KISS, Janos LABAR
15:45 - 16:00 #6060 - IM06-OP118 Electron diffractive imaging using fork-shaped grating masks.
Electron diffractive imaging using fork-shaped grating masks.

An electron vortex beam is propagating electron which carries an orbital angular momentum (OAM) [1]. Because an electron has an electric charge and a mass, electron vortex beam is considered to have a magnetic moment and a moment of force, with which imaging of magnetic materials and manipulation of nano-sized objects are expected [2,3].

Electron vortex beams are generated using amplitude holograms such as binary masks of forked gratings [2] and spiral zone plates [4], and using phase holograms of forked gratings as their diffracted waves when the holograms are illuminated by a plane wave [2]. Recently, spiral phase plates with a smooth and continuous variation of the thickness of Si3N4 membranes were successfully prepared by nano-fabrication techniques, which were not realized in the first report by Uchida and Tonomura [1].

In the present study, the forked grating masks are used as a selected area aperture for electron diffractive imaging, which imposes a real space constraint. Diffractive imaging is lens less imaging for reconstructing the wave field from a diffraction pattern. Diffractive imaging requires a constraint in real space, or “support region”, which corresponds to a beam illuminated area of the specimen. The support region has so far been restricted by a narrow beam itself or a single circular hole inserted at the first image plane of microscopes. In the present study, the support region is restricted by a forked grating. Forked gratings provide not only a transmitted peak but also discrete Bragg peaks which contain rich information of the object located in the support region, and thus one can expect more reliable phase retrieval than the case using a hole mask.

The patterns of the forked gratings with a 5 μm diameter were designed by computer hologram whose Burgers vector of b = 1. The forked gratings were fabricated from 1μm thick PtPd films deposited on 50nm thick Si3N4 membranes by using a focused ion beam (FIB) instrument. The forked gratings were introduced into a position of selected-are aperture of a transmission electron microscope. Diffraction patterns were taken by a Gatan imaging fileter with a 16 bit 2k x 2k CCD camera.

Figures 1(a) and 1(b) show a TEM image of the forked grating and its diffraction pattern, respectively. Figures 1(c), 1(d), 1(e) and 1(f) show retrieved amplitudes of image and diffraction pattern, and retrieved phases of image and diffraction patterns, respectively. The retrieved diffraction amplitude (Fig. 1(d)) shows a good agreement with the experimental amplitude (Fig.1(b)). A flat phase in the retrieved phase of the image (Fig.1(e)), which is consistent to the plane wave incidence, is well reproduced. A deformation of the wavefront of incident electron beam by a quadruple magnetic field produced by a stigmator of the intermediate lens of the microscope is also successfully visualized by the present method.

A wavefront deformed by a specimen is also reconstructed. We used Au nano-plates as test specimens. Figures 2(a) and 2(b) show an experimental TEM image and diffraction pattern of a Au nano-plate. Figures 2(c), 2(d), 2(e) and 2(f) show retrieved amplitudes of the image and diffraction pattern, and retrieved phase of the image and diffraction pattern, respectively. The retrieved diffraction amplitude (Fig. 2(d)) shows a good agreement with the experimental amplitude (Fig. 2(b)). The thickness of the Au nano-plate is obtained from the phase map (Fig. 2(e)), which is consistent to the thickness determined by electron holography. We discuss how the phase retrieval using a forked grating mask is effective by comparing with the cases using a regular grating and a single circular hole.


Saitoh KOH (Nagoya, Japan), Nambu HIROKI, Uchida MASAYA
16:00 - 16:15 #5912 - IM06-OP116 Inversion of dynamical scattering from large-angle rocking-beam electron diffraction patterns.
Inversion of dynamical scattering from large-angle rocking-beam electron diffraction patterns.

A method for ab-initio structure factor retrieval from large-angle rocking-beam electron diffraction (LARBED)[1] data of thin crystals is described and tested.
This method determines crystal structure factors and specimen thickness from the intensities of the diffraction spots alone, solving a nonlinear least-squares problem. No additional information, such as atomicity or information about chemical composition, have been made use of.

In addition to a demonstration of the method on 120 keV experimental data of SrTiO3, where 456 structure factors have been retrieved, we analyze the dependence of the success of the reconstruction on specimen thickness and tilt range by applying this algorithm to simulated data. Our numerical experiments show that the dynamical inversion by gradient optimization works best if the beam tilt range is large and the specimen not too thick. At specimen thicknesses which allow for moderate multiple scattering, the large tilt amplitude effectively removes local minima in this global optimization problem, making ab-initio structure factor retrieval possible.

In addition, a dynamic parallelism framework  based on the Compute Unified Device Architecture (CUDA) is introduced, reducing the runtime of the optimization routine by two orders of magnitude when compared to running on a CPU.

The authors acknowledge funding by the Carl Zeiss Foundation as well as the German Research Foundation (Grant no. KO 2911/7-1 and SFB 951).

[1] Koch, C.T., 2011. Aberration-compensated large-angle rocking-beam electron diffraction. Ultramicroscopy, 111, 828–840. doi:10.1016/j.ultramic.2010.12.014


Feng WANG (Berlin, Germany), Robert PENNINGTON, Christoph KOCH
16:15 - 16:30 #5947 - IM06-OP117 Optimization of NBED simulations to accurately predict disc-detection measurements.
Optimization of NBED simulations to accurately predict disc-detection measurements.

Scanning TEM (STEM) in combination with a small convergence angle (nano-beam electron diffraction, NBED) can be used, e.g., to determine the local strain state of a sample by measuring the distance between two non-overlapping Bragg discs in the diffraction pattern [1]. Automated disc-detection algorithms [2] reveal a high precision which allows for measuring small shifts of diffracted discs relative to the undiffracted disc to determine local strain with a spatial resolution below 1 nm. Simulation of NBED patterns is an important tool to optimize the precision of an experimental measurement as well as to predict the resolution of measured strain profiles at interfaces [3]. In this context, it is important to optimize such simulations to describe experimental measurements as accurately as possible. The present study shows by a comparison of experiment and simulation that for both types of simulations, the absorptive-potential and the frozen-lattice method, deviations to experiment occur if additional effects, such as electron noise or the influence of the modulation-transfer function (MTF) of the CCD camera, are not taken into account.

Fig 1(a) shows the undiffracted 000 disc of an experimental tilt series in pure silicon which was compared with simulations (Fig 1(b) shows the raw absorptive-potential simulations). The selected experimental disc in Fig 2(a) shows smooth edges in contrast to the raw simulation (b) with much sharper edges. Fig 2(c) shows the simulated disc after adding background and applying MTF and noise. It is shown that results for 000-disc detection of the modified simulation agree sufficiently well with experiment for all tilts giving a reliable tool to investigate the effect of sample conditions on NBED-disc detection.

With these optimized simulations, we separately investigated three effects on the 000-disc detection procedure: the effect of (1) scanning into a strained layer (without composition change), (2) scanning into a layer of different material (but without changes in the crystal structure), and (3) the effect of varying specimen thickness.

The latter effect occurs in experiment, e.g., in case of selective layer etching. A GaAs supercell was set up with [001] electron beam direction with two plateaus on the top and on the bottom surface as shown in the schematic illustration in Fig. 3(a). Different NBED disc-detection algorithms [2] were used to detect the deviation of the 000-disc position from the initial center for a scan along the [100] direction across the plateaus. Fig. 3(b) shows the deviations in μrad where each line stands for a certain detection algorithm (Selective Edge Detection [2] and Radial Gradient Maximization [2], both with and without radius fitting) - in all cases the slopes on the surface lead to a measured deviation of the disc position of up to 30-40 μrad. This reveals a consequence for experimental measurements: On the one hand, if non-homogeneous surface topology is an unwanted factor, it can lead to artifacts in disc-position determination. On the other hand, it also might offer the possibility for precise measurements of topology or sample orientation.

[1] F Uesugi et al., Ultramicroscopy 111(2011), p. 995-998

[2] K Müller et al. Microsc. Microanal. 18 (2012), p. 995-1009

[3] C Mahr et al., Ultramicroscopy 158 (2015), p. 38-48

[4] This work was supported by the German Research Foundation (DFG) under contract number RO 2057/11-1 and MU 3660/1-1.


Tim GRIEB (Bremen, Germany), Florian Fritz KRAUSE, Christoph MAHR, Knut MÜLLER-CASPARY, Dennis ZILLMANN, Marco SCHOWALTER, Andreas ROSENAUER
Salle Tête d'or 1&2

"Wednesday 31 August"

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LS2-II
14:15 - 16:30

LS2: Cell organisation and dynamics
SLOT II

Chairpersons: Isabelle ARNAL (Chairperson, Grenoble, France), Chris HAWES (Chairperson, Oxford, United Kingdom), Eija JOKITALO (Chairperson, University of Helsinki, Finland)
14:15 - 14:45 #8262 - LS02-S08 Dissecting the neuronal microtubule cytoskeleton using optical nanoscopy.
Dissecting the neuronal microtubule cytoskeleton using optical nanoscopy.

Cellular organization depends on the cytoskeleton, a mechanical network of biopolymers that controls cell shape and strength, as well as on motor proteins that can move over these biopolymers to deliver cargo to specific subcellular compartments. Nevertheless, the precise mechanisms that control cytoskeletal organization, the function and dynamics of different motor proteins, and the precise functions of subcellular positioning are still poorly understood. In my lecture, I will highlight novel probes and methodology for the super-resolution imaging of the cytoskeleton. These approaches allow us to better resolve cytoskeletal organization in dense cellular compartments, such as the axons and dendrites of neurons. These technologies hold great promises for exploring cellular organization in health and disease.


Lukas KAPITEIN (Utrecht, The Netherlands)
Invited
14:45 - 15:15 #8650 - LS02-S09 Ultrastructural analysis of spindle architecture in C. elegans.
Ultrastructural analysis of spindle architecture in C. elegans.

Mitosis and meiosis are essential mechanisms for any eukaryotic cell in order to divide and propagate. During both processes, microtubules are reorganized to assemble into bipolar spindles and align the condensed DNA in preparation for chromosome segregation. While the dynamic aspects of spindle assembly have been intensively studied by light microscopy, detailed ultrastructural analyses of spindle organization are largely missing. For an in depth understanding of both mitotic and meiotic spindle architecture, a quantitative 3-D analysis of spindles is urgently needed. Using the early C. elegans embryo as a model system, the aim of our work is to better understand the functional organization of bipolar spindles. We apply dual-axis, serial-section electron tomography to quantitative analyze spindle parameters. This approach takes advantage of imaging embryos at about 5-8 nm resolution and a genetically amenable model system, in which background structure and a genome-wide screen for factors involved in cell division has been completed.


Thomas MÜLLER-REICHERT (dresden, Germany)
Invited
15:15 - 15:30 #6888 - LS02-OP016 Local order and conformation of nucleosomes in solution and in interphase nuclei analysed by cryo-electron microscopy of vitreous sections.
Local order and conformation of nucleosomes in solution and in interphase nuclei analysed by cryo-electron microscopy of vitreous sections.

Despite spectacular advances in our knowledge of chromosome dynamics and large scale organisation, little is still known about how the 10 nm nucleosome bead-on-string fibre is packed in the cell nucleus. While a folding into 30 nm fibres has long been assumed, there is now accumulating evidence that no such structure exists in situ (1), except in the cases of chicken erythrocytes and echinoderm sperm cells (2). Our knowledge of the nucleosome structure itself is still limited to crystallographic structures obtained with engineered particles (3). There is also increasing evidence that there would be no unique nucleosome structure but a whole dynamic family with variations of the composition and conformation of the particle (histone variants, post translational modifications, stoichiometry) (4).

Using cryo-electron microscopy of vitreous sections (CEMOVIS), we explore in parallel the conformation and local ordering of nucleosomes both in the interphase nuclei of human cell lines HT29 (Figure 1A) and KE37 and in concentrated solutions of isolated native particles in presence of low or high added salt concentrations (15 or 150 mM NaCl) (Figure 1B).

In both cases, individual nucleosomes can be identified. Striated patterns, indicative of the presence of piles of stacked particles are observed, but much more locally in cell nuclei (piles of 2 to 4-5 particles only). We analyse these patterns by comparison with the different projections of the DNA from the canonical crystallographic structure of the nucleosome core particle (2) to determine their orientations. On side view of the nucleosomes, we measured the distance between the DNA gyres around the particle (pitch P of the DNA superhelix). This reveals that both in vitro in solution and in situ in interphase nuclei, the nucleosome conformation is not unique, but fluctuates. In concentrated solution, both the supramolecular order (5) and the conformation depend on the ionic environment. In particular, the nucleosome is on average more “open” at low added salt concentration (with P = 30.5Å), than at high salt, where its conformation resembles that found in crystals formed by reconstituted recombinant particles (P = 28 Å).  Surprisingly, in situ, the conformation of the nucleosome is also more “open” (31Å), matching the results found in vitro at low salt concentration.

 

(1) McDowall et al (1986) EMBO J., 5, 1395-1402; Elstov et al (2008) PNAS 73, 1897-1901; Nishino et al (2012) EMBO J. 31, 1644-1653.

(2) Scheffer et al (2011), PNAS 108, 16992-1997; Woodcock (1994) J. Cell Biol. 125, 11-19.

(3) Lüger K. et al (1997) Nature, 389, 251-259 ; Davey CA. et al (2002) J. Mol. Biol. 319, 1097-1113.  

(4) Zlatanova J. et al (2009) Structure 17, 160-171; McGinty & Tan (2014) Chem Rev 115, 2255-2273 ; Ngo & Ha (2015) NAR, 43, 3964-3971.

(5) Mangenot et al (2004) J. Mol. Biol. 333, 907-913.


Amélie LEFORESTIER (Paris-Saclay), Nicolas LEMERCIER, Françoise LIVOLANT
15:30 - 15:45 #6897 - LS02-OP017 Lipidic structures in the cell nucleus – role of lamins?
Lipidic structures in the cell nucleus – role of lamins?

Spatial ordering of the cell nucleus is critical for controlling fundamental nuclear processes such as gene expression, DNA replication, and RNA processing. So far, mostly protein complexes have been found as important for this ordering. We describe novel structures containing phosphatidylinositol 4,5-bisphosphate (PIP2) which seem to contribute as well. Ultrastructural studies demonstrate the PIP2-positive structures propagating through the nucleolus and stretching into the nucleoplasm where PIP2 is enriched in interchromatin granules, and also form previously undescribed 50-100 nm roundish “lipid islets”. We show that PIP2 islets are evolutionary conserved structures enriched in carbon-rich compounds and surrounded by nucleic acids and protein-containing constituents. By means of electron microscopy and super-resolution light microscopy, we show that at the periphery of the islets, PIP2 co-localizes or is located in the immediate vicinity with nascent transcripts, lamin A, LAP2α, and markers of transcriptionally active and inactive chromatin. We demonstrate that PIP2 islets are sensitive to RNase treatment, while their disruption affects the level of transcription. Direct binding and mobility assays also revealed nucleoplasmic interactions between PIP2 and nuclear myosin 1 (NM1), which is a part of chromatin remodelling complex B-WICH and promotes Pol I and Pol II transcription. Furthermore, PIP2-dependent recruitment of lamin A into an NM1-bound lipo-protein complex was demonstrated. We analysed the lamin A/NMI/PIP2 complex in more detail and revealed some specific lamin isoforms as components of this complex. Based also on the results of microscopic localization and NMI PIP2-dependent mobility, we hypothesize that this complex participates in the formation of intranuclear domains involved in fine-tuning of gene expression patterns.

Acknowledgements: This work was supported by GACR (15-08835Y, 15-08738S, 16-03346S), TACR (TE01020118), the Human Frontier Science Program (RGP0017/2013), and by institutional grant (long-term conceptual development of the scientific organization; RVO: 68378050). We acknowledge the LM CF and EM CF of the Microscopy Centre, IMG AS CR supported by the MEYS CR (LM2015062 Czech-BioImaging)


Vlada PHILIMONENKO (Prague 4, Czech Republic), Margarita SOBOL, Lenka JAROLIMOVÁ, Zuzana LUBOVSKÁ, Jana SCHRENKOVÁ, Alžběta KALENDOVÁ, Anatoly PHILIMONENKO, Ondřej ŠMÍD, Pavel HOZÁK
15:45 - 16:00 #6635 - LS02-OP014 Visualizing translocation of pre-ribosomal particles through nuclear pore complexes by electron tomography.
Visualizing translocation of pre-ribosomal particles through nuclear pore complexes by electron tomography.

            Exchanges between the nucleus and the cytoplasm are ensured by the nuclear pore complexes (NPCs), massive multi-molecular structures that form channels through the nuclear envelope. The molecular determinants that underlie the translocation of macromolecules through NPCs have been thoroughly studied, but less is known about the topology and the dynamics of the translocation events. The precursors to the ribosomal subunits, which ensure protein synthesis in the cells, are one of the biggest and most abundant nuclear export substrates. Most steps of ribosome synthesis take place in the nucleolus, but pre-ribosomes (the precursors to the ribosomal subunits) leave the nucleolus and are exported into the cytoplasm at the end of the maturation process. In yeast Saccharomyces cerevisiae, the ribosome synthesis rate is estimated to reach 4000 subunits/minute in exponential growth phase. How cargoes of such large size and complex structure cross the barrier of the nuclear pore complex so efficiently remains poorly understood. In addition, the interactions of large cargoes with the NPC as well as their path in the central channel have been much debated and several models have been proposed, calling for experimental observations at high resolution.

            Using ultrafast high-pressure freezing, cryo-embedding and electron tomography, we could detect for the first time unlabelled large RNPs translocating through the NPC in yeast. Their size, abundance and morphological resemblance with both cytoplasmic ribosomes and nucleolar RNPs indicated that they were mainly pre-ribosomes. In support to this hypothesis, the presence of these particles in NPCs was strongly diminished upon inhibition of ribosome synthesis in an RNA polymerase I mutant strain. Over 700 NPCs were observed in the tomograms: the occupancy rate of NPCs with RNP particles was only ~5-6%, suggesting that pre-ribosome nuclear export was not limited by the number of NPCs. Although pre-ribosomes are synthesized in the nucleolus, they were detected with equal probability in NPCs located on the nucleolar and the nucleoplasmic sides of the nucleus, indicating no specialized function of either class of NPCs with respect to ribosomal export. To examine the position of the translocating particles relative to the NPC structure, we fitted a 3D reconstruction of the NPC from Dictyostellium discoideum into the tomograms (figure 1). On the nuclear side and within the core scaffold of the NPC, pre-ribosomes follow the NPC central axis, but they deviate from this position when they reach the NPC cytoplasmic ring, which suggest that they interact with the cytoplasmic nucleoporins. Finally, to get access to the dynamics of this process, we established a model of pre-ribosome nuclear export through NPCs according to a Jackson queueing network. Fitting of this model to the experimental data allowed us to approximate the translocation time of pre-ribosomes through the NPC to 70-150 ms. The rate limiting step appears to be the passage of the NPC core scaffold. These electron tomography data from ultrafast frozen samples not only deliver the first high-resolution view of the trajectory of pre-ribosomes through the NPC at nanometer scale, but also provide some dynamic parameters when combined with a probabilistic model of nuclear export.


Franck DELAVOIE, Vanessa SOLDAN, Jean-Yves DAUXOIS, Pierre-Emmanuel GLEIZES (Toulouse)
16:00 - 16:15 #5870 - LS02-OP011 Bright-field STEM tomography of thick biological sections.
Bright-field STEM tomography of thick biological sections.

By performing electron tomography in the scanning transmission electron microscope (STEM), it is possible to obtain 3D reconstructions at a resolution of around 10 nm from stained plastic-embedded sections of eukaryotic cells in 1–2 µm thick sections. This is achievable because there are no imaging lenses after the specimen when the electron microscope is operated in STEM mode, so that chromatic aberration of the objective lens does not compromise the spatial resolution when there is strong multiple inelastic scattering [1-4]. In STEM tomography it is necessary to minimize geometrical broadening of the probe by selecting a small probe convergence angle of ~1 mrad. Furthemore, by using an axial bright-field detector instead of a standard high-angle annular dark-field detector, it is possible to reduce resolution loss caused by multiple elastic scattering in thick specimens [2-4].

 

Recently, we have applied axial bright-field STEM tomography to various biological problems, including: mechanism of vesicle release in presynaptic rod bipolar cell ribbon synapses in retina [5]; ultrastructural changes in postsynaptic densities in hypocampal neuronal cultures when specific scaffolding proteins are knocked out [6]; and ultrastructure changes that occur on activation of human blood platelets, small anucleate blood cells that aggregate to seal leaks at sites of vascular injury [7].

 

Electron tomograms were acquired with an FEI Tecnai TF30 transmission electron microscope equipped with a field-emission gun and operating at an acceleration voltage of 300 kV. Specimens were prepared by conventional or freeze-substitution techniques with osmium tetroxide fixation, and sections were cut to a thickness of between 1 µm and 1.5 µm and stained with uranyl acetate and/or lead citrate, before being coated with carbon and gold nanoparticles, which served as fiducial markers. Dual-axis tilt series were acquired using a Gatan bright-field STEM detector over an angular tilt range of ±60° and for some specimens ±68° with a 2° tilt increment. Tomograms were reconstructed using the IMOD program [8] and surface rendered using FEI Amira 3D software.

 

The capabilities of bright-field STEM tomography are illustrated in 3D reconstructions of blood platelets (Figure 1), which shows specimen and detector geometry, as well as orthoslices through a 1.5 µm thick section of a plastic-embedded, frozen and freeze-substituted preparation of platelets in early stage of activation. Of particular interest are the morphological changes that occur in alpha-granules, which package important proteins that are released on platelet activation [9]. Structural changes that occur in the early stages of alpha-granule activation are not understood due to difficulties in controlling the physiological state of platelets and in visualizing membranes at the nanoscale throughout entire platelets. Visualization of the 3D structure from the STEM tomogram (Figure 2) reveals that, on early activation, tubules extend from decondensing alpha-granules and form pores with the plasma membrane, whereas other a-granules remain in their condensed unactivated state [7].  These results from blood platelets, and a range of other biological systems, demonstrate that STEM tomography can visualize large cellular structures in their entirety at a spatial resolution of around 10 nm. In the case of blood platelets, it is possible to reconstruct complex interconnected membrane systems in almost complete cells.

 

This research was supported by the intramural program of NIBIB, NIH.  The authors thank Drs. B. Storrie, I.D. Pokrovskaya, J.A. Kamyskowski, and A.A. Prince for the blood platelet specimens.

 

[1] A.E. Yakushevska et al, J. Struct. Biol. 159 (2007) p. 381.

[2] M.F. Hohmann-Marriott et al, Nature Methods 6 (2009) p. 729.

[3] A.A. Sousa et al, Ultramicroscopy 109 (2009) p. 213.

[4] A.A. Sousa et al, J. Struct. Biol. 174 (2011) p. 107.

[5] C.W. Graydon et al, J. Neurosci. 34 (2014) p. 8948.

[6] X. Chen et al, Proc. Natl. Acad. Sci. USA 112 (2015) p. E6983.

[7] I.D. Pokrovskaya et al, J. Thrombosis Haemostasis 14 (2015) p. 572.

[8] J.R. Kremer, D.N. Mastronarde, J. Struct. Biol. 116 (1996) p. 71.

[9] J. Kamykowski et al, Blood 118 (2011) p. 1370.


Richard LEAPMAN (Bethesda, USA), Qianping HE, Gina CALCO, Bryan KUO, Jake HOYNE, Guofeng ZHANG, Maria ARONOVA
16:15 - 16:30 #5574 - LS02-OP010 Advantages and pitfalls for transmission electron microscopic studies in the identification of extracellular vesicles.
Advantages and pitfalls for transmission electron microscopic studies in the identification of extracellular vesicles.

Although the story of extracellular vesicles (EVs), these cell-derived submicron structures started about 70 years ago, we had to wait for the first transmission electron microscopic (TEM) evidence of their existence till 1981.

By now it has been proved that the release of membrane vesicles is a process conserved in both prokaryotes and eukaryotes. Compelling piles of evidence support the significance of exosomes, microparticles/microvesicles or ectosomes and apoptotic bodies in a broad range of biological processes including e.g. intercellular communication, signaling processes, the transfer of genetic information, and also  in case of pathological events, from inflammation till tumor development. Not surprisingly, the possibility of EV-related biomarker and therapeutic applications made this research field attractive for clinical and pharmaceutical research, too.

However, in spite of growing interest, the classification of EVs is still under debate. The numerous protocols, applied by the different research teams, made the comparison of the results more complicated; moreover several frequently used and up-to-date particle enumeration techniques such as nanoparticle tracking analysis or tunable resistive pulse sensing are not suitable to distinguish vesicles and e.g. protein aggregates in similar size. Falsified experimental results may occur easily, especially in case of body fluid samples or culture media, in which protein aggregates, which share biophysical parameters with EVs, may contaminate vesicle preparations.

Purity and type of the fractions should be investigated with different techniques depending on the size range of the investigated vesicle population. For detection of exosomes, the frequently used flow cytometry is not the best choice, while by means of AFM, dynamic light scattering, MS techniques or microfluidic device, mentioned only few among the applied possibilities, can reveal several features of the investigated vesicle samples. However, even the most sophisticated combination of different techniques cannot be complete without transmission electron microscopy. It is the only technique which is able to visualize vesicular and non-vesicular particles in the whole size range of the vesicle population, and if we want to use EVs for research and therapy, we have to learn, how TEM can be applied for their accurate characterization.

Acknowledgements

This work was supported by grant NK 84043.


Agnes KITTEL (Budapest, Hungary), Xabier OSTEIKOETXEA, Barbara SÓDAR, Krisztina PÁLÓCZY, Tamás BARANYAI, Zoltán GIRICZ, Edit Irén BUZÁS
Salon Tête d'Or

"Wednesday 31 August"

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IM9-I
14:15 - 16:30

IM9: Super resolution in light microscopy
SLOT I

Chairpersons: Cristina FLORS (Chairperson, Madrid, Spain), Suliana MANLEY (Chairperson, Lausanne, Switzerland)
14:15 - 14:45 #8374 - IM09-S57 Information in localisation microscopy.
Information in localisation microscopy.

Localisation microscopy is a powerful tool for imaging structures at a lengthscale of tens of nm, but its utility for live cell imaging is limited by the time it takes to acquire the data needed for a super-resolution image. The acquisition time can be cut by more than two orders of magnitude by using advanced algorithms which can analyse dense data, trading off acquisition and processing time.

Modelling the entire localisation microscopy dataset using a Hidden Markov Model allows localisation information to be extracted from extremely dense datasets. This Bayesian analysis of blinking and bleaching (3B) is able to image dynamic processes in live cells at a timescale of a few seconds, though it is very computationally intensive, requiring at least several hours of analysis. We demonstrate the performance of 3B on various live cell systems, including cardiac myocytes and podosomes, showing a resolution of tens of nm with acquisition times down to a second.

While analysing higher density images can improve the speed at which the data required for a super-resolution reconstruction is acquired, there are still limits to the speed which can be achieved. Unlike in conventional fluorescence microscopy, these limits are not just set by the properties of the microscope, but are determined by the structure of the sample itself. This is because the local sample structure affects how quickly the information necessary to create an image of a certain resolution can be transmitted through the optical system. The theoretical limits will be discussed, and the effect on live cell experiments demonstrated.


Susan COX (London, United Kingdom)
Invited
14:45 - 15:15 #8687 - IM09-S58 Robust sub-diffraction imaging using SOFI and engineered genetically-encoded labels.
Robust sub-diffraction imaging using SOFI and engineered genetically-encoded labels.

Time-lapse sub-diffraction imaging of cells labeled with genetically-encoded labels continues remains a challenging task. We have focused our efforts on developing techniques that work well under challenging conditions, combined with the semi-rational engineering of "smart" fluorescent proteins. In this presentation I will discuss our work in developing live cell sub-diffraction imaging by combining superresolution optical fluctuation imaging (SOFI) with new photochromic probes based on the enhanced green fluorescent protein, EGFP. In particular, I will discuss our recent progress in enhancing the temporal resolution of SOFI imaging while also providing reliability estimates for the obtained images [1], followed by our work on engineering and understanding improved fluorescent proteins with properties specifically tailored to sub-diffraction imaging. In particular I will discuss our recent rsGreens [2], which display robust optical performance while also expressing well in E. coli and HeLa cells. Since our rsGreens are based on EGFP, they should be widely useful in existing experiments. In the last part I will highlight ongoing work on how these developments can be applied to live cell interaction sensing.

[1] Vandenberg et al, Biomed Opt Expr 2016
[2] Duwé et al, ACS Nano 2015


Peter DEDECKER (Leuven, Belgium)
Invited
15:15 - 15:45 #8901 - IM09-S58b Super-resolution technologies to probe nuclear architecture.
Super-resolution technologies to probe nuclear architecture.

Chromosomes from bacteria to humans are organized at the sub-megabase scale into genomic domains. We will present examples of how super-resolution microscopies can be combined with new DNA labeling technologies and genome-wide chromosome capture methods to shed light into the mechanisms of formation and regulation of genome architecture. In particular, we will present our recent advances in multifocus plane microscopy for 3D single-molecule localization microcopy, two-color STORM to study genome structure, and high-thoughput 3D-SIM-based image analysis to investigate chromosome segregation.

Marcelo NOLLMANN (Montpellier)
Invited
15:45 - 16:00 #5778 - IM09-OP163 Nanoscale topography of cells and vesicles in adhesion revealed by quantitative Total Internal Reflection Fluorescence Microscopy.
Nanoscale topography of cells and vesicles in adhesion revealed by quantitative Total Internal Reflection Fluorescence Microscopy.

Total Internal Reflection Fluorescence (TIRF) microscopy is becoming a widespread technique to study cellular processes occurring near the contact region with the glass substrate [1]. The characteristics of TIRF microscopy are directly related to the singular properties of evanescent waves, such as the exponential decay of the electric field along the z direction. This providing a selective excitation of fluorescent molecules close to the interface. Determination of the accurate distance from the surface to the plasma membrane constitutes a crucial issue to investigate the physical basis of cellular adhesion process [2]. However, quantitative interpretation of TIRF pictures regarding the distance z between a labeled membrane and the substrate is not trivial. Indeed, the contrast of TIRF images depends on several parameters. The first one is obviously the distance z, which separates the dye molecules from the surface, as the emitted fluorescence signal is mainly governed by the exponential decay of the evanescent wave. But TIRF images contrast is also affected by unknown parameters such as the local concentration of dyes, their dipole moment orientation and consequences on their related angular emission pattern (which influences the detection efficiency ηd), and also their absorption cross section (σabs) and their fluorescence lifetime (τ). Moreover, these last three parameters (ηd, σabs, τ) can be strongly altered as a function of z near the surface [3].

To get around this problem, we propose two strategies allowing us to map the membrane-substrate separation distance with a nanometric resolution (typically 10 nm). The first one is dedicated to study the adhesion of Giant Unilamellar Vesicles (GUVs), which are often used as a biomimetic system to reproduce cells spreading. This approach, called normalized TIRF, is based on dual observation, which combine epi-fluorescence microscopy and TIRF microscopy: TIRF images are normalized by epi-fluorescence ones [4, 5]. Figure 1 shows an example of a negatively charged GUV completely spread on a thin layer of a positively charged polyelectrolyte (PDDA) recovering the coverslip. The second technique is devoted to explore the adhesion of living cells. This last is called variable-angle TIRF (vaTIRF) microscopy. vaTIRF is an old technique introduced in the middle of 80s and quickly forgot due to the high complexity of the first experimental setup used. We propose an improved straightforward version of vaTIRF microscopy adapted to modern TIRF setup. This technique involves the recording of a stack of several TIRF images, by gradually increasing the incident angle θ on the sample. We developed a comprehensive theory to extract the membrane/substrate separation distance from fluorescently labeled cell membranes [6], as illustrated in figure 2 for a MDA-MB-231 cell in adhesion on fibronectin. Finally, we demonstrate that these two techniques (nTIRF and vaTIRF) are useful to quantify the adhesion of vesicles and cells from weak to strong membrane-surface interactions, achieved on various functionalized substrates with polymers or proteins, such as collagen and fibronectin.

[1] D. Axelrod, Total Internal Reflection Fluorescence Microscopy, Meth. in Cell Biol. 89, 169-221 (2008).

[2] E. Sackmann and A-S. Smith, Physics of cell adhesion: some lessons from cell-mimetic systems, Soft Matter 10, 1644-1659 (2014).

[3] J. Mertz, Radiative absorption, fluorescence, and scattering of a classical dipole near a lossless interface: a unified description, J. Opt. Soc. Am. B 17, 1906-1913 (2000).

[4] M. Cardoso Dos Santos, R. Déturche, C. Vézy and R. Jaffiol, Axial nanoscale localization by normalized total internal reflection fluorescence microscopy, Opt. Lett. 39, 869-872 (2014).

[5] M. Cardoso Dos Santos, C. Vézy and R. Jaffiol, Nanoscale characterization of vesicle adhesion by normalized total internal reflection fluorescence microscopy, accepted in BBA Biomembranes (2016).

[6] M. Cardoso Dos Santos, R. Déturche, C. Vézy and R. Jaffiol, Nanoscale topography of cells in adhesion revealed by variable-angle total internal reflection fluorescence microscopy, submitted in Biophys. J. (2016).


Marcelina CARDOSO DOS SANTOS, Cyrille VÉZY, Rodolphe JAFFIOL (TROYES CEDEX)
16:00 - 16:15 #6038 - IM09-OP164 Turning Off Photoinduced Electron Transfer In Green Fluorescent Proteins For Super-Resolution Microscopy.
Turning Off Photoinduced Electron Transfer In Green Fluorescent Proteins For Super-Resolution Microscopy.

Under blue light irradiation green FPs can act as light-induced electron donors in photochemical reactions with various electron acceptors. These reactions are accompanied by green-to-red photoconversion (oxidative redding) which is among the processes significantly contributing to the photostability of many GFP family proteins. We suppose that inhibition of redding will have similar consequences in super-resolution microscopy (PALM) as it does in epifluorescent microscopy, namely, enhanced photostability and average fluorophore brightness. Understanding of the primary mechanisms of electron transfer (ET) occurring in excited state allows to control the photostability. In our recent work [1] we consider two mechanistic hypotheses:

1) ET proceeds via direct ET to a surface-docked oxidant (tunnel mechanism)

2) Photoinduced ET proceeds via a hopping mechanism (in which the first step is ET from the chromophore to some intermediate acceptor, and the second step is ET from this acceptor to an outside oxidant molecule)

Hopping mechanism appears to be the most likely process according to the quantum-mechanical calculations. One of the approaches to reduce ET via hopping mechanism is an elimination of the potential internal electron acceptors, located in the side chain of fluorescent protein. We determined such critical residues in the polypeptide chain of PAGFP using quantum-chemical simulations, and changed them to amino acid that is not able to be an efficient electron acceptor, namely, leucine. According to both epifluorescent and TIRF-experiments’ data, this substitution leads to the highly improved photostability in comparison with the original PAGFP. It has also been shown that in TIRF-experiments PAGFP Y145L had significantly lower blinking rate than PAGFP (see Fig.1). This property could be potentially used in SPT (single particle tracking) technique, where transitions to the dark states impose serious constraints and appear to be a drawback.

[1]. Bogdanov et al., JACS, 2016, in press


Anastasia MAMONTOVA (Moscow, Russia), Alexey BOGDANOV, Alexander MISHIN, Natalia KLEMENTIEVA, Konstantin LUKYANOV
16:15 - 16:30 #6636 - IM09-OP165 Fractals in the nucleus – understanding chromatin organisation with 3D SMLM.
Fractals in the nucleus – understanding chromatin organisation with 3D SMLM.

Abstract

Chromatin presents a unique challenge in structural biology.  Its fundamental units, DNA and the nucleosome, are well-characterised at the Ångstrom level.1  Yet, the higher-order organisation of the chromatin ensemble, particularly during interphase, remains largely to be determined.  Single molecule localisation microscopy (SMLM) appears uniquely positioned to answer many remaining questions about chromatin structure – it is possible to determine structures to accuracies of better than 20 nm,2 and analysis of spatial point data has been used by some groups to determine the scaling behaviour and fractal dimension of chromatin.3  This is of particular interest when considering nuclear molecular transport and gene activation: it has been suggested that cells use the very structure of chromatin to regulate transcription and expression.4

 

Whilst imaging has been able to shed light on the general organisation of chromatin and other fibrous structures in the cell, there is a lack of methods to fully characterise their folding and looping behaviour.  To date, most SMLM analysis has focussed on clustering-based algorithms such as Ripley’s K function or more recently Bayesian clustering.5  It is clear, however, that different approaches are needed to tackle the analysis of elongated or fibrous structures within cells, and in three dimensions.

 

Here, we demonstrate the power of 3D pair correlation analysis combined with careful labelling of regions of interest in chromatin, showing that the fractal dimension of chromatin can be determined across the entire nucleus for structures 30 nm in size upwards.  This provides a platform for analysis complementary to imaging, describing differential folding behaviour across the nucleus, yielding results comparable to Hi-C and other recent methods.  In addition to applying spatial statistics to probe chromatin structure on the nanoscale, we incorporate photon statistics into the analysis.  This allows us to draw conclusions about chromatin structure with greater confidence by adding a weighting to reduce the influence of data points localised with lower precision than others.

 

Understanding how chromatin fibres fold at all stages in the cell cycle is crucial to the future development of drugs and novel treatments.  More and more, drugs target specific loci yet in many cases lack the ability to be directed to the target of interest with great accuracy.6  We hope that by understanding the organisation of different regions of the genome, drugs can be designed to be delivered to their targets in ‘smarter’ ways.

 

References

1.  Flors, C. & Earnshaw, W. C. Super-resolution fluorescence microscopy as a tool to study the nanoscale organization of chromosomes. Curr. Opin. Chem. Biol. 15, 838–44 (2011).

2.  Deschout, H. et al. Precisely and accurately localizing single emitters in fluorescence microscopy. Nat. Methods 11, 253–66 (2014).

3.  Récamier, V. et al. Single cell correlation fractal dimension of chromatin. Nucleus 5, 75–84 (2014).

4.  Bancaud, A. et al. Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin. EMBO J. 28, 3785–3798 (2009).

5.  Rubin-Delanchy, P. et al. Bayesian cluster identification in single-molecule localization microscopy data. Nat. Methods (2015). doi:10.1038/nmeth.3612

6.  Rajendran, L., Knölker, H.-J. & Simons, K. Subcellular targeting strategies for drug design and delivery. Nat. Rev. Drug Discov. 9, 29–42 (2010). 


Christophe LYNCH (Reading, United Kingdom), Stanley BOTCHWAY, Stephen WEBB, Ian ROBINSON
Salle Gratte Ciel 3
16:45

"Wednesday 31 August"

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SSW3
16:45 - 18:45

Specific scientific workshop MIRID
Microscopy of Ion Radiation Induced Defects and changes in structure and properties of materialstereology and 3D Image Analysis in Microscopy

Moderators: Isabelle MONNET (Chercheur/ Madir Group) (CAEN CEDEX, France), Elena SUVOROVA (Moscow, Russia)
Invited speakers: Pierre-Eugene COULON (Research Ingenior) (Invited speaker, Palaiseau, France), Jacques HERMAN O'CONNELL (Invited speaker, Port Elisabeth, South Africa), Ritesh SACHAN (Invited speaker, Oak Ridge, USA), Christina TRAUTMANN (Invited speaker, Darmstadt, Germany)
Salle Tête d'or 1&2

"Wednesday 31 August"

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SSW4
16:45 - 18:45

Specific scientific workshop Stereology
Stereology and 3D Image Analysis in Microscopy

Moderator: Lucie KUBÍNOVÁ (Pragues, Czech Republic)
Animators: Karl-Anton DORPH-PETERSEN (Associate Professor) (Animator, Aarhus, Denmark), Alain HAZOTTE (Animator, Lorraine, France), Maxime MOREAUD (Animator, Solaize, France), Eric PIRARD (Animator, Liege, Belgium)
Salon Tête d'Or

"Wednesday 31 August"

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SSW2
16:45 - 18:45

specific scientific workshop MLMF
Management of Large Microscopy Facilities

Moderators: Ferdinand HOFER (Graz, Austria), Joachim MAYER (Aachen, Germany)
Salle Gratte Ciel 3
Thursday 01 September
08:45

"Thursday 01 September"

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PL5
08:45 - 09:45

Plenary Lecture 5

08:45 - 09:45 Plenary Lecture 5. Nadine PEYRIERAS (Plenary Speaker, France)
Amphithéâtre
10:15

"Thursday 01 September"

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IM3-II
10:15 - 12:30

IM3: New Instrumentation
SLOT II

Chairpersons: Emmanuel BEAUREPAIRE (Chairperson, Polytechnique, Paris, France), Christian COLLIEX (Chairperson, LPS, Orsay, France), Jörg ENDERLEIN (Chairperson, Göttingen, Germany), Andreas ENGEL (Chairperson, Delft, The Netherlands), Ernst H.K. STELZER (Professor) (Chairperson, Frankfurt am Main, Germany)
10:15 - 10:45 IM03-S39 Quantum coherent electron-light interactions studied by ultrafast transmission electron microscopy. Claus ROPERS (Invited speaker, Göttingen, Germany)
Invited
10:45 - 11:00 #5203 - IM03-OP083 Coherence of a pulsed electron beam extracted from a semiconductor photocathode in transmission electron microscope.
Coherence of a pulsed electron beam extracted from a semiconductor photocathode in transmission electron microscope.

 Dynamic observations of nanoscale materials are important for investigations of the time evolution of optical couplings, distractions, and energy relaxations in a local site. To suppress electron-beam damage of biological specimens or organic material in transmission electron microscopes (TEMs), a pulsed electron beam is expected to be applied for the probe beam. Therefore, we have begun developing a spin-polarized pulse-TEM (SPTEM), which comprises a photocathode-type electron source (PES) and a low-voltage TEM [1-3]. Several beam parameters of the PES are greatly superior to those of conventional thermal electron beams. In addition, PES has the ability to generate a sub-picosecond pulse-beam [4].

 In continuous beam emissions, we have previously demonstrated that the SPTEM can provide both TEM images and diffraction patterns [2]. The TEM images were obtained at a spatial resolution of 1 nm with a 30-kV acceleration voltage. The apparatus has an electron beam energy width below 114-meV in the TEM without any monochrometors [6]. The energy width indicates that the temporal coherence is approximately 34 fs at 30-eV beam energy. The brightness is measured by taking a spot size and a convergent angle on an image plane. The measured brightness is approximately 4 × 107 A cm−2 sr−1 at 30-keV beam energy with a polarization of 82% and a drive-laser power of 800 kW/cm2 on the photocathode [6]. The brightness for 200-kV beam energy is estimated to be 3 × 108 A cm−2 sr−1, which is converted using a Lorentz factor. The order of the brightness is sufficient for an interference experiment. Figure 2 demonstrates interference fringes of a spin-polarized electron beam using a newly installed biprism. The resulting electron beam exhibits a long coherence length owing to its low initial emittance of 2.6 nm rad, which can generate interference fringes representative of a first-order correlation using an electron biprism. These results indicate that the SPTEM can provide enough coherence in both the lateral and longitudinal directions even if the semiconductor photocathode is used for an electron emitter.

 Pulse beam emission in the SPTEM was also performed using a combination of the semiconductor photocathode and an ultra-short pulse laser, which can realize a time-resolved measurement with the stroboscopic technique or the single-shot technique. The photocathode has high quantum efficiency on the order of 10−3 compared with other metal-type photocathodes, which can realized not only a continuous emission but also a pico-second pulse emission. The picosecond pulse duration was realized using a newly developed ultra-short pulse laser system, which comprises a mode-lock Ti-Sapphire laser, a compensator for group velocity dispersion, and a pulse-duration converter. Figure 2 shows a typical beam current measured using a Faraday-cup type current monitor. The repetition rate of the pulse beam is synchronized with a drive laser system. Time-resolved TEM imaging and pulsed interference fringes were also successfully conducted using a stroboscopic acquisition technique [7]. Figures 3a and b show the interference fringes using a continuous electron wave and a 20-ps pulsed electron wave under the same condition of the electron optics, respectively. In the continuous–mode, a 1-mA source current was used for the interference experiment. In contrast, the pulsed beam had a high charge of 150 fC/pulse with a repetition rate of 80 MHz, which is comparable with a 12-mA average current. Consequently, despite its high current density, the pulsed electron beam emitted from the photocathode has sufficient coherence to realize a time-resolved holography that can analyze phase information in a temporal space.

 The authors thank Drs. H. Shinada, M. Koguchi, and M. Tomita of the Hitachi Central Research Laboratory for fruitful discussions and encouragement. This research was supported by MEXT KAKENHI Grant Numbers 25706031 and 15K13404.

 

[1] M. Kuwahara et al., Appl. Phys. Lett. 101 (2012) 03310.

[2] M. Kuwahara et al., AMTC Letters 3 (2012) 180.

[3] M. Kuwahara et al., J. Phys.:Conf. Ser. 298 (2011) 012016.

[4] Y. Honda, et al., Jpn. J. Appl. Phys. 52, 086401-086407(2013).

[5] X.G. Jin et al., Appl. Phys. Express 1 (2008) 045002.

[6] M. Kuwahara et al., Appl. Phys. Lett. 105, 193101 (2014).

[7] M. Kuwahara et al., Microscopy 62, 607-614 (2013).


Makoto KUWAHARA (Nagoya, Japan), Kouta AOKI, Hiroshi SUZUKI, Hidefumi ASANO, Toru UJIHARA, Koh SAITOH, Nobuo TANAKA
11:00 - 11:15 #4759 - IM03-OP082 Design and realization of an ultrafast cold field emission source operating under high voltage.
Design and realization of an ultrafast cold field emission source operating under high voltage.

Investigation of nanostructures physics requires atomic spatial resolution, meV spectral resolution and femto to nanosecond time-resolution. Accessing all these informations simultaneously would be a breakthrough in nanophysics.

Ultrafast Transmission Electron Microscopes (UTEM) combining subpicosecond temporal resolution and nanometer spatial resolution have recently emerged as unique tools for investigations at both ultimate spatial and temporal resolutions [1]. However, the performances of state-of-the-art UTEM are, in practice, brightness limited by their ultrafast electron source. These sources are commonly based either on photocathode excited by an ultrafast laser beam [2] or, very recently, on Schottky type assembly [3].

The FemtoTEM project aims at developing an alternative Ultrafast Transmission Electron Microscope based on a high brightness laser-driven cold field emission electron source working under 200kV acceleration voltage. The latter consists of a metallic nanotip in tungsten illuminated by femtosecond laser pulses [4]. This development has been achieved by bringing together a commercial femtosecond laser source and a customized 200kV cold-field emission Transmission Electron Microscope Hitachi HF2000.

The main difficulty was to develop the ultrafast cold field emission source modifying the old HF2000 design, well known in CEMES [5]. Indeed, to perform a proper laser assisted field emission, the femtosecond laser beam need to be injected in the ultra high vacuum and high voltage area of the gun, where the tip is located, then focused and aligned in three dimensions on the fine apex of the FE W tip. The new design has been thought to allow such complex operation while keeping the possibility of cold field emitting electrons in continuous operation, as for the standard source. This new design has been finally produced and patented [6].

To build this new source, deep modifications, compared to the original Hitachi design, have been implemented, from the high voltage gun housing and cable to the inner structure of the gun assembly. With the help of finite element modeling, and ray tracing software, the influence of the new design on the electric field, and electrons trajectories, brightness, … has been investigated and compared to experimental results (see Figure). Last results will be also presented highlighting the potentiality of this new source for ultrafast electron holography application, for which a good brightness is mandatory. 

[1] Zewail, A. H., Science, 2010, 328, 187-193

[2] Zewail, A. H., USPTO n°US7,154,091 of December 26. 2006

[3] Bormann, R. et al, Journal of Applied Physics, 2015, 118, 173105

[4] Hommelhoff, P. et al, Phys. Rev. Lett., 2006, 96, 077401

[5] Houdellier, F. et al, Carbon 2012, 50 (5), 2037–2044

[6] Arbouet A. & Houdellier F., USPTO No.US9,263,229 B2 of February 16.2016

 

 Acknowledgments

This work was funded through the support of the « Institut National de Physique du CNRS »- INP-CNRS and the ANR FemtoTEM n°ANR-14-CE26-0013-01. The authors acknowledge the European Union under the Seventh Framework Programme under a contract for an Integrated Infrastructure Initiative Reference 312483-ESTEEM2.


Florent HOUDELLIER (CEMES, Toulouse), Giuseppe Mario CARUSO, Pierre ABEILHOU, Arnaud ARBOUET
11:15 - 11:30 #5965 - IM03-OP089 Spatio-Temporal Probing of Lattice Dynamics in Graphite by Ultrafast TEM.
Spatio-Temporal Probing of Lattice Dynamics in Graphite by Ultrafast TEM.

Over the last decades, electron microscopy was tremendously successful in unravelling material structures and compositions, resolved on the atomic scale, but only with limited temporal resolution. Optical pump-probe techniques are now applied routinely for the study of ultrafast dynamics. Nevertheless, we still lack tools for accessing nanoscale dynamics on a femtosecond timescale.

Such a capability can be provided by ultrafast transmission electron microscopy (UTEM), which employs a pulsed electron beam with sub-picosecond pulse duration to stroboscopically probe ultrafast laser-driven dynamics with the imaging and diffraction capabilities of electron microscopy [1,2]. So far, the potential of this approach is limited by the availability of a high brightness laser-driven electron source within a transmission electron microscope.

Here, we apply UTEM for the study of ultrafast local lattice dynamics in single crystalline graphite, enabled by the generation of highly coherent electron bunches from a point-like photoelectron source [3].

The Göttingen UTEM instrument is based on the custom modification of a JEOL 2100F Schottky field emission TEM, allowing for optical sample excitation and the generation of optically triggered ultrashort electron pulses (Fig. 1a) [4]. The laser-triggered nanoscopic electron source [5-7] employs localized single-photon photoemission from the front facet of a tip-shaped ZrO/W(100) emitter (Fig. 1b). Highly coherent ultrashort electron pulses with a normalized emittance of 3 nm∙mrad are generated, enabling ultrafast electron imaging with phase-contrast and time-resolved local probing (Fig. 2). Specifically, at the sample position, we obtain electron focal spot sizes down to 1 nm with a temporal pulse width of 300 fs (full-width-at-half-maximum) and a spectral bandwidth of 0.6 eV (cf. Fig. 1c-e) [3].

We demonstrate ultrafast nanoscale diffractive probing, by studying the local light-induced structural dynamics close to the edge of a single-crystalline graphite thin film (Fig. 2a) [8]. Local convergent beam electron diffraction (CBED) patterns from nanoscale sample areas are recorded using tightly focused electron pulses (diameter of about 10 nm). The complex local distortion of the crystal structure is retrieved by utilizing the broad angular range of the incident electron beam (convergence angle of about 48 mrad) to probe several Bragg scattering conditions simultaneously in reciprocal space (cf. Fig. 2b,c).

For the case of graphite, we observe strongly pronounced lattice vibrations at the crystalline edge (Fig. 2d,e), corresponding to out-of-plane breathing modes, as well as in-plane shearing modes mapped with 10-nm spatial resolution. Considering the time-dependent relative line shifts, the individual contributions of mechanical deformation modes are disentangled. Furthermore, raster-scanning the electron focal spot across the sample allows for a comprehensive spatio-temporal reconstruction of the involved dynamics.

In conclusion, we have developed a novel UTEM instrument, relying on highly coherent electron pulses generated from a nanoscale photoemitter. Additionally, we presented first results on its capability for the investigation of ultrafast nanoscale dynamics in graphite.

References

[1] D. J. Flannigan, A. H. Zewail, Acc. Chem. Res. 45(10), 1828 (2012). [2] A. Yurtsever, A.H. Zewail, PNAS 108(8), 3152 (2011). [3] A. Feist et al., in preparation. [4] A. Feist et al., Nature 521, 200 (2015). [5] C. Ropers et al., Phys. Rev. Lett. 98, 043907 (2007). [6] M. Gulde et al., Science 345, 200 (2014). [7] R. Bormann et al., J. Appl. Phys. 118, 173105 (2015). [8] A. Feist et al., in preparation.


Armin FEIST (Göttingen, Germany), Nara RUBIANO DA SILVA, Wenxi LIANG, Claus ROPERS, Sascha SCHÄFER
11:30 - 11:45 #6771 - IM03-OP098 Chromatic corrected EFTEM investigation on spinodal decomposition of TiAlN at 80 kV with PICO.
Chromatic corrected EFTEM investigation on spinodal decomposition of TiAlN at 80 kV with PICO.

Chromatic aberration (Cc) in the modern transmission electron microscopy (TEM) plays an important role with the advancement the resolution up to atomic level1. Correction of Cc is especially important for high resolution energy -filtered TEM (EFTEM) with the requirement of large slit width and signal intensity to obtain an atomic resolved image, formatted from the inelastic scattered electrons in a limited time and stability constraint. As an advantage, large area and high resolution elemental map can be obtained in just tens of seconds, much faster than the traditional STEM-EELS counterpart. The short acquisition time is very crucial in the practical applications of both material science and biological science where the samples are very often sensitive to the electron beam illumination, the interesting compositions and structures are unknown, or they are the mixture of different elements and phases.

In this report, an annealed TiAlN sample is prepared for the EFTEM investigation with FEI-Titan PICO, focusing on the spinodal decomposition phenomenon. As a hard-coating material, TiAlN has exceptional mechanical and thermal properties attractive for tool-coating industry­­2. However at a higher temperature around 900 °C, the hardness is found to drop drastically owing to the formation of hexagonal AlN, which typically occurs after the spinodal decomposition. The spinodal decomposition contains the segregation of the composition while the crystal structure remains3. It is therefore typically difficult to prove the existence of this phenomenon without an elemental map with an atomic resolution, which is exactly a Cc corrected EFTEM image can provide.

In addition, different effects to the image resolution induced from factors considered in a Cc corrected EFTEM experiment will be discussed, including sample thickness, acceleration voltage, sample drifting, and atomic numbers of the sample. Compositional variation near the dislocation will be discussed as well. Preservation of elastic contrast4 has been observed and analyzed, which is crucial to map the inelastic image into the final elemental map.

 

Reference:

  1. K.W. Urban et al., Phys. Rev. Lett. 110, 185507 (2013).
  2. M. Hans et al., J. Appl. Phys. 116, 093515 (2014).
  3. I. Abrikosov et al., Materials 4, 1599-1618 (2011).
  4. A. Howie, Proc. R. Soc. Lond. A: Math. Phys Eng. Sci. 271, 268-287 (1963). 

Yen-Ting CHEN (AACHEN, Germany), Keke CHANG, Joachim MAYER, Jochen M. SCHNEIDER
11:45 - 12:00 #4572 - IM03-OP081 Status of the SALVE-microscope: Cc-correction for atomic-resolution TEM imaging at 20kV.
Status of the SALVE-microscope: Cc-correction for atomic-resolution TEM imaging at 20kV.

With the goal to enable atomic resolution TEM observations on beam sensitive materials the SALVE project had been initiated to develop a dedicated low-voltage TEM that is corrected for both, spherical and chromatic aberration [1,2].

The centerpiece of the SALVE III microscope is a new quadrupole-octupole Cc-Cs-corrector by CEOS that is based on the so-called Rose-Kuhn-Design [3,4]. The corrector is incorporated into a cubed FEI Titan Themis TEM and has been aligned for five accelerating voltages in the range from 20 to 80kV.

During design of the corrector special care had to be taken to prevent the resolution-limiting effect of thermal magnetic field noise (Johnson-Nyquist noise) that causes an image spread and limits the information transfer in Cc-corrected electron microscopes [5]. As seen in Figure 1(a), these measures have been very successful in that for all desired high-tensions the finally achieved resolutions exceed the 50mrad milestone. Figure 1(b) exemplarily demonstrates the achieved information limit on a purely amorphous 2nm tungsten sample at an accelerating voltage of 20kV. For the two shown perpendicular directions the Young's fringes significantly surpass the 50mrad aperture. In order to “use” the transferred information in a proper way, the phase plate, i.e. the aberration function, has to be well-controlled beyond the 50mrad-angle. This requires accurate control over axial aberrations up to including 5th order, and -for a considerable field of view- access to off-axial aberrations. The aberration measurement in Figure 1(c) demonstrates that all unround axial aberrations as well as the off-axial aberrations can be tuned sufficiently small. At the same time, the round aberrations can be adjusted for a suitable phase contrast transfer function (indicated in green color). Consequently, as shown in Figure 1(d) even at 20kV atomic resolution imaging becomes reality.

The chromatic aberration causes inelastically scattered electrons, i.e. electrons of lower energy, to be focused much stronger. This effect is compensated in the Cc-corrected instrument. Figure 1(e) compares the energy-dependent defocus effect of a Cc-uncorrected TEM (red line, Cc=1.45mm) and the SALVE microscope (measurements: black dots; 3rd order fit: dashed line) at 20kV. While the gradient of the Cc-uncorrected case is too steep to be distinguished from the axis of the ordinate in the magnified area, the SALVE instrument is capable to image a 20eV window with defocus changes of only 2nm. This will enable new imaging modes such as high-resolution EFTEM at very low voltages. [6]


References:

[1] U. Kaiser et al., Ultramicroscopy 111, Issue 8 (2011), 1239-1246.
[2] http://www.salve-project.de/
[3] H. Rose, Proc. 10th Eur. Congr. El. Micr. (Granada, Spain) (1992), 47.
[4] H. Rose, Patent Application DE 42 04 512 A 1 (1992).
[5] S. Uhlemann et al., Physical Review Letters 111(4) (2013), 046101.
[6] The authors acknowledge funding from the German Research Foundation (DFG) and the Ministry of Science, Research and the Arts (MWK) of the federal state Baden-Württemberg, Germany.


Martin LINCK (Heidelberg, Germany), Peter HARTEL, Stephan UHLEMANN, Frank KAHL, Heiko MÜLLER, Joachim ZACH, Johannes BISKUPEK, Marcel NIESTADT, Ute KAISER, Max HAIDER
12:00 - 12:15 #5987 - IM03-OP091 Aberration Corrected Analytical Scanning and Transmission Electron Microscope for High-Resolution Imaging and Analysis for Multi-User Facilities.
Aberration Corrected Analytical Scanning and Transmission Electron Microscope for High-Resolution Imaging and Analysis for Multi-User Facilities.

In recent years the revolution in aberration correction technology has made ultrahigh resolution imaging and analysis routinely accessible on transmission electron microscope (TEM) and scanning transmission electron microscope (STEM). We have developed a new analytical 200 kV cold field emission TEM equipped with a probe-forming aberration corrector, the model is Hitachi HF5000 (Figure 1). The microscope is fully covered in a metal enclosure to reduce the influence from environmental acoustic noise and temperature variation. Remote operation through Ethernet communication is possible as a result of a new design individual microprocessor circuit. Regarding the atomically resolved analytical capability, one of the key demands is to achieve high performance at a multi-user facility. To meet this demand, the Hitachi HF5000 is designed to be user friendly and extensive sample capability covers most requirement s from users in the fields of material science, materials fabrication, and device industry.

The HF5000 is capable of TEM imaging, STEM imaging with bright field (BF), annular dark field (DF) detectors, and secondary electron (SE) imaging. The probe-forming aberration corrector with automated correction of up to third order aberrations allows users to obtain aberration-free STEM illumination optics with minimized effort. Figure 2 gives an example after the aberration correction, the Ronchigram pattern of the amorphous specimen shows an approximately 32 mrad half angle flat region, corresponding to the optimal aperture condition for aberration-free STEM imaging. While TEM and STEM imaging probe the bulk structure of specimens, the SE imaging helps understanding the surface structure. It is important to note that the SE image can be acquired simultaneously with STEM image therefore both surface and bulk structures are revealed side-by-side at the same time, even at atomic resolution [1].  Such a triple imaging capability on one microscope column is very unique and critical in studying heterogeneous materials such as catalysts.

For modern analytical TEM, the most desirable features are high spatial resolution, high signal detection sensitivity, and sufficient specimen tilting angle range.  New pole-piece is therefore designed for HF5000 which enables sub-angstrom resolution DF-STEM imaging and a large specimen tilt angle of +/-35 degrees.  Figure 3 shows a high-angle annular DF (HAADF)-STEM image of a silicon thin film at the zone-axis direction, Si dumbbells with a 78 pm separation between adjacent Si columns are resolved. To make X-ray analysis highly sensitive, increasing solid angle of the Energy Dispersive X-ray spectroscopy (EDX) detector is essential. Two 100 mm2 silicon drift detectors (SDDs) are installed on the HF5000, the distance between detector and specimen (l) is carefully managed to maximize the solid angle. In order to increase peak to background ratio (P/B), the SDDs are positioned as high as possible relative to specimen surface.  The large take-off angle (q) reduces X-ray absorption and continuum X-rays which radiates with an angular intensity distribution. The improvement of resolving power is also related to the increased long term stability.  High voltage circuits are carefully designed, and stability for power supply of lens and deflection coils is enhanced. A stability of 0.6 ppm/min for circuit current is achieved for one of the beam deflection coils. In addition, the stability for the newly designed high tension circuit is less than 1 ppm which is critical to realize high energy resolution for analytical work using cold field emission gun and high spatial resolution for imaging.

[1] Zhu, Y., Inada, H., Nakamura, K. & Wall, J., Nature Mater. 8, 808-812 (2009)


Hiromi INADA (Ibaraki, Japan), Yoshifumi TANIGUCHI, Takafumi YOTSUJI, Keitaro WATANABE, Hirobumi MUTO, Wataru SHIMOYAMA, Hiroaki MATSUMOTO, Mitsuru KONNO
12:15 - 12:30 #6063 - IM03-OP093 Performances of aberration-corrected monochromatic low-voltage analytical electron microscope.
Performances of aberration-corrected monochromatic low-voltage analytical electron microscope.

To study the detailed electronic structures of carbon-related materials at an energy resolution better than 25 meV, we have developed a monochromatic low-voltage analytical electron microscope under a project “Triple-C phase-2”. The developed microscope is equipped with a double Wien-filter monochromator system [1] and delta-type aberration correctors [2].  It works at an accelerating voltage range from 15 kV to 60 kV.  The two Wien-filters for the monochromator, which is located just below the extraction anode of Schottky source, enables us to obtain an achromatic probe at an exit of the monochromator, since the second filter cancels out the energy dispersion generated by the first filter.  The energy spread of electrons (ΔE) is controllable by choosing the width of the slits, which are located between two filters, independently on the probe size at the specimen.  The delta-type aberration corrector consists of three dodeca-poles to correct geometrical aberrations up to the fifth-order including six-fold astigmatism.  In addition, so as to obtain high energy resolution spectra in electron energy-loss spectroscopy (EELS), the microscope is equipped with a high energy resolution spectrometer (Quantum-ERS from Gatan Inc.), which incorporates with the highly sensitive detection system at lower accelerating voltage and the highly stabilized power supplies for the prism and the lens system.

The ultimate energy resolution was acquired to be 14 meV at an accelerating voltage of 30 kV with an acquisition time of 2 ms, as shown in Fig. 1.  And at the longer acquisition time of 0.5 seconds, the energy resolution was measured to be 20 meV.  These results exceeded the original target of 25 meV.  Figures 2 (a) and (b) show raw ADF-STEM images of a single-layered graphene at 60 kV and 30 kV.  These images were obtained with a monochromatic electron probe, whose ΔE was 228 meV (using a 4 μm slit).  By using a monochromatic electron probe at 60 kV, C-C dumbbells of single-layered graphene were clearly resolved.  And a single-carbon atom on a graphene was successfully imaged at 30 kV.  These results indicate that the developed microscope enables us to analyze materials with high energy and spatial resolutions at lower accelerating voltage.

We tested a low-loss EELS map using a hexagonal boron nitride (h-BN) specimen with a monochromatic probe at 30 kV using a 0.1 μm slit. The experimental conditions are listed as probe size = 1 nm, probe current = 10 pA and acquisition time for each pixel = 0.3 seconds.   Figure 2 (a) shows the ADF-STEM image from the EELS mapping area. Fig. 2 (b) shows the extracted low-loss spectrum from the edge of the specimen indicated with the framed yellow square in Fig. 2 (a).  This spectrum, which was measured with an energy resolution of 22 meV, showed a sharp peak corresponding to an optical phonon at about 170 meV.  Figure 2 (c) shows the EELS map at the phonon excitation energy, whose intensity is normalized with the zero-loss peak intensity in each pixel. The phonon intensity was found to be strongly delocalized at the vacuum area beyond the edge of the specimen of more than 100 nm.

 

References

 

[1] M. Mukai, et al.: Ultramicroscopy 140 (2014) 37-43.

[2] H. Sawada, et al.: J. Electron Microsc. 58 (2009) 341-347.

[3] This work is supported by JST, Research Acceleration Program (2012–2016).


Masaki MUKAI (Akishima, Japan), Shigeyuki MORISHITA, Hidetaka SAWADA, Kazu SUENAGA
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"Thursday 01 September"

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IM8-II
10:15 - 12:30

IM8: Spectromicroscopies and analytical microscopy
SLOT II

Chairpersons: Gerald KOTHLEITNER (Chairperson, Graz, Austria), Anders MEIBOM (Chairperson, Lausanne, Switzerland), Bénédicte WAROT-FONROSE (Chairperson, CEMES, Toulouse, France)
10:15 - 10:45 #8436 - IM08-S54 High resolution STEM imaging and analysis of 2D crystal heterostructure devices and nanoparticle catalysts.
High resolution STEM imaging and analysis of 2D crystal heterostructure devices and nanoparticle catalysts.

The new generation of aberration corrected scanning transmission electron microscope (STEM) instruments optimized for high spatial resolution energy dispersive x-ray (EDX) spectroscopy provide exciting opportunities for elemental analysis of nanoscale objects. Here I will discuss recent example applications from our studies of nanoparticle catalysts and 2D device heterostructures where these analytical capabilities have provided new insights to interpret the electronic and catalytic properties of such systems.

Elementally sensitive STEM EDX electron tomography provides a route to understanding full 3D morphology and chemistry with nanometre resolution. I will demonstrate results showing the effect of different elemental segregation on the catalytic performance of bimetallic nanoparticles [1]. I will also discuss the current limitations of this technique, including compensation of detector shadowing using a time varied acquisition scheme, and recent progress towards quantitative analysis [2,3].

I will also present work demonstrating that cross sectional STEM-EDX spectrum imaging can be used to reveal the internal atomic structure of van der Waals heterostructure devices produced by layering together multiple 2D crystals [4]. Recently we have studied light emitting diode devices, produced by mechanical exfoliation and subsequent stacking of 13 different 2D crystals, including 4 MoS2 monolayer quantum wells [5]. Using cross sectional STEM spectrum imaging we reveal that the crystal interfaces of such devices are atomically flat and provide detailed structural information to help to explain the electroluminescence results obtained. Other 2D crystal heterostructures will also be discussed including those incorporating air sensitive 2D crystals, such as black phosphorus, that require fabrication under an argon atmosphere to preserve the device performance [6].

Finally recent work where customised modification of an in situ STEM holder system [7] has allowed us to perform high spatial resolution STEM-EDX spectrum imaging during in-situ gas and liquid phase experiments and at elevated temperature [8].

 

[1] Slater et al, Nano Letters, 14, 1921-1926, (2014)

[2] Slater et al, Microscopy and Microanalysis, in press, (2016)

[3] Slater et al, Ultramicroscopy, 162, 61-73, (2016).

[4] Haigh et al, Nature Materials 11, 764-767, (2012); Georgiou et al Nature nanotechnology 8, 100-103 (2013)

[5] Withers et al, Nature Materials, 14, 301-306 (2015)

[6] Cao et al, Nano Letters, 15, 4914-4921 (2015)

[7] Zaluzec et al, Microscopy and Microanalysis 20 (2), 323 (2014)

[8] Lewis et al, Chemical Communications, 50, 10019-10022 (2014), Lewis et al Nanoscale, 6 (22), 13598-13605 (2014).


Sarah HAIGH (Manchester, United Kingdom), Thomas SLATER, Aidan ROONEY, Eric PRESTAT, Roman GORBACHEV, Freddie WITHERS, Konstantin NOVOSELOV, Geim ANDRE
Invited
10:45 - 11:15 #8364 - IM08-S54B Correlative investigations by HAADF-STEM and Atom Probe Tomography.
Correlative investigations by HAADF-STEM and Atom Probe Tomography.

The ultimate capabilities achieved by electron microscopies and their associated techniques inevitably raise the following question: is there room for conceiving new ways of investigating materials at the nano-scale? Indeed, most recent TEMs and STEMs easily achieve sub-Angström spatial resolution, while allowing elemental mapping at the same scale. Meanwhile, electron tomography has unambiguously demonstrated the possibility to image atomic positions and defects. In these instruments, some physical properties (e.g. optical, magnetic) are now accessible, again with increased resolution. However, as far as an ultimate machine would allow correlating physical properties with a “perfect” determination of atomic species and atomic positions in 3D, one must recognize that such a tool is not yet available. Aside from electron microscopes, Atom Probe Tomography (APT), which is intrinsically a 3D technique, has received increased attention owing to drastic developments during the last decade. This tool enables reconstructing volumes of matter by determining atom positions in 3D, which nature is determined by time of flight mass spectrometry. Thanks to the improvement of specimen preparation protocols, APT can be applied to much broader areas of materials science (semi-conductors, bio-materials, geo-materials, soft mater and even liquids).  Nowadays, intrinsic limitations of this tool reside in its limited detection efficiency (roughly 50% of atoms are detected) and in its anisotropic spatial resolution (though sub-Angström resolution is currently accessible along the direction of analysis, sub-nanometer resolution is achieved along transverse directions).

Strong advantages of APT rely in its possibility to detect all types of atoms, independently of their atomic number, in its excellent detection limit (few ppm in favorable cases but rarely more than 100 ppm), and in its intrinsic 3D nature. In order to collect a significant amount of information on a same nano-object, it is relevant to consider a correlative approach combining a TEM/STEM and APT. Motivations for such an approach are numerous. A non-exhaustive list would evoke: i) the possibility to associate structural defects (in TEM) with segregations (in APT); ii) associating the morphology of a particle (in electron tomography) with a 3D field of composition (in APT); iii) improving the quality of APT reconstructions by accessing additional information about the specimen morphology in TEM/STEM.

This presentation will begin with a rapid overview of the efforts made by the APT users community to promote this approach. Then, some illustrations will be given which relate the correlative investigation on alloys and quantum wells. The possibility to image APT specimens in STEM in high resolution mode (cf. Figure), while enabling atom counting will be discussed on the basis of HAADF-STEM image simulations. The advantages of the correlation of electron tomography and APT will be highlighted in the case of GaN/AlNGaN quantum wells.


Williams LEFEBVRE (GPM, Rouen), Florian MOYON, Antoine NORMAND, Nicolas ROLLAND, Ivan BLUM, Auriane ETIENNE, Celia CASTRO, Fabien CUVILLY, Lorenzo MANCINI, Isabelle MOUTON, Lorenzo RIGUTTI, François VURPILLOT
Invited
11:15 - 11:30 #5742 - IM08-OP141 Performance of the SALVE III corrector for EFTEM applications.
Performance of the SALVE III corrector for EFTEM applications.

The Sub-Angstroem-Low-Voltage-Electron-Microscope (SALVE) corrector was designed and built by the CEOS GmbH for the SALVE III project [1], a joined project of the group of Prof. Dr. Ute Kaiser at the University of Ulm (Germany), FEI company in Eindhoven (Netherlands) and CEOS GmbH (Germany). This Cc-Cs-corrector is a dedicated low-voltage corrector based on the so-called Rose-Kuhn-Design [2], operated in a cubed FEI Titan Themis TEM for acceleration voltages from 20kV to 80kV. For all these high tensions it can be aligned such that it provides uniform phase contrast transfer for all image features up to an aperture angle of θmax = 50mrad and at the same time for a considerable field of view.

 

To achieve such an excellent performance the corrector allows correcting all axial aberrations of fourth order and for certain unround axial aberrations of fifth order. Furthermore, C5 can be adjusted to its optimum positive value for bright atom contrast. All axial aberrations up to third order and all off-axial aberrations up to third order depending linearly on the distance from the axis can be adjusted. For all residual axial aberrations of fourth and fifth order, the lower order aberrations of same respective multiplicity can be adjusted for optimal compensation. This means that the integrated squared deviation from the ideal phase shift (±π/2 in case of C1, C3, C5 and zero for all other multiplicities) over the entire aperture is minimized for each azimuthal multiplicity separately [3]. The predicted performance of the corrector has already been demonstrated for the five acceleration voltages 20kV, 30kV, 40kV, 60kV and 80kV [4]. Figure 1 (a) shows that even within the largest field of view reasonable with the mounted Ceta 4k camera the wave aberration hardly changes up to a scattering angle of 50mrad.

 

Since the corrector will also be used together with a post column energy filter, we currently investigate both, theoretically and experimentally, how the optical performance of an EFTEM image is affected by the corrector. After correction of the linear chromatic aberration Cc, an energy window of at least 20eV can be transferred by the corrector with a negligible focus change even at a beam energy of 20keV, see figure 1 (b). However, there are many more potentially harmful types of chromatic aberrations to consider for an EFTEM image of a given finite width of the energy window:

 

   • Axial chromatic aberrations (depending on scattering angle and energy loss)

      can deteriorate the quality of the axial PCTF. For large EFTEM windows

      also the chromatic spherical aberration has to be taken into account.

   • Off-axial chromatic aberrations (depending on scattering angle, distance from the axis and energy loss)

      can effectively decrease the field of view, because they affect the quality of the transfer function

      in the outer image parts.

   • Chromatic distortions (depending on distance from the axis and energy loss)

      can deteriorate the information limit in the outer regions of an EFTEM image.

   • Residual dispersions of higher order in energy change could affect

      the information limit of all regions of the EFTEM image.

 

In this work we will analyze in detail how the residual higher order chromatic aberrations, the remaining chromatic distortions and the residual dispersions of the SALVE corrector affect the EFTEM performance. [5]

 

References:

 

[1] http://www.salve-project.de

[2] H. Rose, Proc. 10th Eur. Congr. El. Micr. (Granada, Spain) (1992), 47.

[3] M. Lentzen, Microsc. Microanal. 14 (2008)

[4] M. Linck: "Status of the SALVE-microscope", this conference.

[5] The authors acknowledge funding from the German Research Foundation (DFG) and the Ministry of Science, Research and the Arts (MWK) of the federal state Baden-Württemberg, Germany.


Frank KAHL (Heidelberg, Germany), Martin LINCK, Peter HARTEL, Heiko MUELLER, Stephan UHLEMANN, Max HAIDER, Joachim ZACH
11:30 - 11:45 #5760 - IM08-OP142 A new method for quantitative XEDS tomography of complex hetero-nanostructures.
A new method for quantitative XEDS tomography of complex hetero-nanostructures.

Over the last decades, electron tomography based on HAADF-STEM has evolved into a standard technique to investigate the morphology and inner structure of nanomaterials. The HAADF-STEM intensity depends on sample thickness but also scales with the atomic number Z and therefore, chemical compositions can be studied from these three-dimensional (3D) reconstructions.[1] Nevertheless, it is not straightforward to interpret the gray levels in a 3D HAADF-STEM reconstruction, when mixing of elements is expected or elements with atomic number Z close to each other are present.

In an increasing number of recent studies, X-ray Energy Dispersive Spectroscopy (XEDS) has been combined with tomography to understand complex nanostructure morphology and composition in 3D.[2] These studies rely on newly developed XEDS detectors such as the Super-X detection system, which consists of four individual detectors, symmetrically arranged around the TEM sample.[3] By using the Super-X detector, one is able to overcome problems that were previously related to extreme shadowing of the XEDS signal caused by the sample-detector configuration. Although this problem can be largely overcome, some shadowing effects remain, as illustrated in Figure 1. Since such shadowing effects vary for different tilt angles, the XEDS will also depend on the tilt angle and the projection principle for electron tomography is no longer fulfilled. Because of this problem and the low signal-to-noise ratio, typical of XEDS mapping, it remains challenging to obtain quantitative information by 3D XEDS and further progress is required.

Here, we propose an alternative approach to optimize the reconstruction of an XEDS tomography series by minimizing the impact of shadowing effects and improving the spatial resolution. The method is based on the synergistic combination of HAADF-STEM tomography and XEDS quantitative mapping.[4-5] HAADF-STEM yields a relatively high signal-to-noise ratio, enabling an accurate reconstruction of the morphology. XEDS, on the other hand, yields chemical information, but the limited amount of data that can be usually collected, hampers a good morphological reconstruction. As a proof of principle, we apply our methodology to a nanostructure containing a mix of Au and Ag atoms. It should be mentioned that the approach we propose here enables quantitative 3D chemical characterization of a broad variety of nanostructures.


 

[1]          P. Midgley, M. Weyland, Ultramicroscopy 2003, 96, 413.

[2]          B. Goris, L. Polavarapu, S. Bals, G. Van Tendeloo, L. M. Liz-Marzán, Nano letters 2014, 14, 3220.

[3]          P. Schlossmacher, D. Klenov, B. Freitag, H. Von Harrach, Microscopy today 2010, 18, 14.

[4]          D. Zanaga, T. Altantzis, J. Sanctorum, B. Freitag, S. Bals, Ultramicroscopy 2016, In press, doi:10.1016/j.ultramic.2016.03.002.

[5]          D. Zanaga, T. Altantzis, L. Polavarapu, L. M. Marzán, B. Freitag, S. Bals, Particle & Particle Systems Characterization, 2016, In press.

 

Acknowledgements

The authors acknowledge financial support from European Research Council (ERC Starting Grant # 335078-COLOURATOMS, ERC Advanced Grant # 291667 HierarSACol and ERC Advanced Grant 267867 - PLASMAQUO), the European Union under the FP7 (Integrated Infrastructure Initiative N. 262348 European Soft Matter Infrastructure, ESMI and N. 312483 ESTEEM2).


Daniele ZANAGA (Antwerpen, Belgium), Thomas ALTANTZIS, Lakshminarayana POLAVARAPU, Luis M. LIZ-MARZÁN, Bert FREITAG, Sara BALS
11:45 - 12:00 #5979 - IM08-OP147 X-ray emission generation constant from mono-layer graphene measured using STEM-EDS map detected with highly sensitive EDS system.
IM08-OP147 X-ray emission generation constant from mono-layer graphene measured using STEM-EDS map detected with highly sensitive EDS system.

X-ray generation constant of an atom by an electron irradiated is essential information for quantification of sample in X-ray fluorescence spectroscopy. The generated X-ray intensity (I) from a sample is described as I = 1/A ʃAʃt P(x, z)Ik(x) dzdx,  where A is electron beam irradiated area, t is sample thickness, P is electron density and Ik is X-ray intensity excited by an electron. To evaluate I, it is requested the accurate value of Ik. Then, to have accurate Ik, the comparison between Ik values from theoretical calculation (Ik theory) and experimental result (Ik exp) is important.  However, it is exacting to measure the Ik exp accurately using a multi-layer specimen because of two difficulties, especially for low energy X-rays. One is self absorption of emitted X-ray, which can be judged from the 3D sample shape. And the other is counting a number of atoms included in an analysis area. Namely, it is difficult to grasp the 3D sample shape. The shapes of single atomic chain or single layer specimen are simple and ideal for the aimed experiment in this paper. In this paper, we report the way and results of directly measured X-ray generation constant of carbon atoms, using a mono-layered graphene sample, which is easy to estimate 3D shape from electron microscope images.

For experiment, highly sensitive detector system is requested, since the X-ray signal from this sample is so thin and emit a little of X-ray. We used a multiple silicon drift detector (SDD) system for the X-ray measurement, since the SDD has become highly sensitive recently due to design flexibility of its shape and size to fit busy space around the sample of TEM. The microscope we used was an aberration corrected microscope (JEM-ARM300F).  For the new detection system with two SDD , a pair of objective lens pole pieces and a sample holder are re-designed to make a distance between sample and detectors as short as possible, and each detector size is enlarged to be 100 mm2, resulting in the total detection solid angle of 1.6 sr.

Figure 1(c) shows the highly magnified ADF image of mono-layer graphene from the square indicated by dashed line shown in Fig. 1(a). From the image we can recognize the area of mono-layer graphens by clear lattice image and hole of the sample. An X-ray elemental map shown in Fig. 1(b) was obtained simultaneously with ADF image shown in Fig. 1(a).  The difference of X-ray intensity between the hole and the mono-layer graphene is apparent in Fig. 1(b). This leads that the X-ray signal from mono layer with dual SDD detection system is well detectable under the dose, at which mono-layer graphene maintains its structure. The experimental conditions for this experiment were followings: accelerating voltage = 80 kV, probe current = 169 pA, number of pixels = 128 x 128 and total acquisition time = 300 sec.

The Ik exp of carbon is estimated to be 3.29×10-23 photons*cm2/electrons, using the experimental conditions and X-ray intensity from the mono-layer graphene area on Fig. 1(b). This is described as Ik exp ≈ 4πItotal/(Dcarbon*S*Delectron*W), where Itotal  is total X-ray counts (photons) from scan area of mono-layer graphene, Dcarbon is density of carbon atoms (atoms/cm2) in a analyzed area, S is scan area of graphene (cm2), W is a solid angle of X-ray detection and Delectron is density of electrons (electrons/cm2). Dcarbon was estimated to be 3.82×1015 atoms/cm2 from typical atomic density for a unit area. S is 1.38×10-13 cm2. The amount of X-ray counts (Itotal) was measured to be 155 photons accumulated over the area of mono-layer graphene. The density of electrons (Delectron) is simply calculated to be 7.22×1022 electrons/cm2 from experimental conditions. The theoretical generation constant (Ik theory) was calculated to be 1.85×10-23 photons*cm2, which was calculated as a product of ionization cross section (ionization atoms*cm2/electrons) by Bethe [2] and X-ray fluorescence yield (photons/ionization atoms) by Burhop [3], which is shown as Ik theory σkWk , where σk is ionization cross section and calculated to be 2.70×10-20 ionization atoms*cm2 for carbon, Wk is x-ray fluorescence yield and calculated to be 7.11×10-4 photons/ionization atoms for C Ka. The experimental value (Ik exp) do not differ from one by pure calculation (Ik theory) so much. The difference may be due to error in the pure calculation, since the calculation contains considerable approximate expressions. In conclusion, with the highly sensitive detection system and 2D sheet sample, we could measure a physical constant with considerable accuracy. The similar 2D samples such as BN and MoS2 sheets should be useful for measuring X-ray generation constants.

 

[Reference]

[1] NR Lugg et al,Ultramicroscopy 151(2015),p. 150.

[2] H Bethe, Ann. Physik  397(1930),p. 325.

[3] EHS Burhop, J. Phys. Radim 16(1955),p. 625. 


Yu JIMBO (3-1-2, Musashino, Akishima, Tokyo, Japan), Takeo SASAKI, Hidetaka SAWADA, Eiji OKUNISHI, Yukihito KONDO
12:00 - 12:15 #6368 - IM08-OP155 Correlative Nanoscale Luminescence and Elemental Mapping in InGaN/(Al)GaN Dot-in-a-wire Heterostructures.
Correlative Nanoscale Luminescence and Elemental Mapping in InGaN/(Al)GaN Dot-in-a-wire Heterostructures.

Ternary InGaN compounds show great promise for light-emitting diode (LED) applications because of bandgap energies (0.7 – 3.4 eV) that can be tailored to have emission wavelengths spanning the entire visible spectrum. Complex III-N device heterostructures have been incorporated into GaN nanowires (NWs) recently, but exhibit emission linewidths that are broader than expected for their corresponding planar counterparts, as measured with photoluminescence (PL) spectroscopy [1]. Nanoscale elemental mapping has provided evidence of alloy non-uniformity in NWs as a likely cause [2]. It is thus critical to understand how the structural and optical properties interplay within individual NW structures, using combined spectroscopic methods that can resolve different localized signals at the nanoscale with analytical scanning transmission electron microscopy (STEM).

 

Multiple InGaN/(Al)GaN quantum dot (QD) embedded nanowire heterostructures (NWHs), grown catalyst-free on Si(111) substrates by molecular beam epitaxy, were characterized by STEM. To investigate the inhomogeneous broadening observed in PL from an ensemble of NWs [1], nanometer-resolution STEM-cathodoluminescence (CL) spectral imaging on single NWs was performed at 150 K using a system as described in [3]. Individual NWs examined show diverse optical responses, but most NWs exhibit multiple sharp emission peaks (25 – 50 nm at FWHM) centered between 500 – 625 nm in the yellow-green wavelengths (Fig. 1i) from the active region (Fig. 1b–d), identified using the annular dark-field (ADF) signal collected concurrently. This is consistent with the PL, indicating that the broad emission originates from within single NWs. Subsequent aberration-corrected STEM-HAADF images on the same NWs were acquired to evaluate their structural properties, such as the size and morphology of the 10 QDs within the NWH (Fig. 1f). Additionally, electron energy-loss spectroscopy (EELS) spectrum imaging (SI), together with multiple linear least-squares fitting, was used to extract the In-distribution to quantify the In-composition projected through thickness (Fig. 1g,h) [2]. Apparent spatial-spectral correlation can be made between shifts in the CL emission wavelength to the relative In-content between successive QDs from the STEM-EELS (Fig. 1h, regions are color-coded to the corresponding emission wavelength based on the legend in Fig. 1i inset).

 

The luminescence intensity within NWs is related to the presence of a GaN or AlGaN shell surrounding the InGaN/GaN NWHs, formed due to sidewall incorporation during the growth of the subsequent GaN barrier and p-AlGaN electron-blocking layer (EBL), respectively. Both can enhance the in-plane confinement of carriers, hence reducing non-radiative surface recombination. Therefore, the utilization of larger bandgap AlGaN as barriers were also investigated for their expected enhancement in carrier confinement [4]. The InGaN/AlGaN NWHs exhibit a nested core-shell structure made up of an Al-rich AlGaN shell surrounding the InGaN QDs along axial and radial directions (Fig. 2g). STEM-CL spectral imaging shows a progressive red-shifting of the emission peaks along the growth direction (Fig. 2b–d,f,h). Spatial localization of individual spectral features suggests superior three-dimensional carrier confinement, which can be assigned to specific QDs as resolved in the bright-field (BF) image (Fig. 2a). Lastly, the observed spatial asymmetry in the luminescence intensity distribution, which is affected by charge carrier diffusion and drift in the presence of spontaneous and piezoelectric polarization fields in the InGaN/(Al)GaN NWHs, will also be addressed [5].

 

[1] H.P.T. Nguyen et al., Nano Lett., 12(3), 1317–1323 (2012)

[2] S.Y. Woo et al., Nanotechnology, 26(34), 344002 (2015); S.Y. Woo et al., Nano Lett., 15(10), 6413–6418 (2015)

[3] L. Zagonel et al., Nano Lett., 11(2), 568–573 (2011); L. Tizei et al., Appl. Phys. Lett., 105(14), 143106 (2014)

[4] H.P.T. Nguyen, M. Djavid, S.Y. Woo et al., Sci. Rep., 5, 7744 (2015)

[5] This work was supported by the Natural Sciences and Engineering Research Council of Canada (NSERC), with additional funding from the Michael Smith Foreign Study Supplement (MSFSS).


Steffi Y WOO (Hamilton, Canada), Mathieu KOCIAK, Hieu P T NGUYEN, Zetian MI, Gianluigi A BOTTON
12:15 - 12:30 #6573 - IM08-OP159 How the Detector Geometry Influences EDXS Quantification.
How the Detector Geometry Influences EDXS Quantification.

Thanks to the recent advent of very large area sensors and multi-sensor systems X-ray spectrometry in analytical electron microscopes received a substantial boost. In particular, the combination of 2 or 4 detectors has proven to obtain such a good sensitivity that the detection of single atoms is feasible [1]. However, if it comes to quantitative work partial or full shadowing of one or more detectors by the specimen holder will introduce systematic errors of the obtained results [2].

In this paper we closely investigate the influence of the detector-microscope geometry on quantification using a ChemiSTEM system (Super-X) on a Titan microscope with a low background double tilt high visibility holder [3]. We introduce a procedure, which allows for the first time to determine experimentally the detector positions inside the microscope chamber in terms of elevation angle, azimuthal angle, and distance. We measured the amount of shadowing as a function of specimen tilt angle α and compared these measurements to simulations, where we varied the detector positions in order to optimize the fit to the experimental data. The sample was a specially designed Au-Pd thin film deposited on a silicon nitride membrane grid. The obtained positions were then verified by comparing the results to data obtained from different positions of the specimen holder.

To measure the amount of shadowing we used normalized intensities of the available X-ray lines. An optimized simulation for one of the Super-X detectors (Q1) may be seen in fig. 1 (Si-K data). By comparing measurements from different lines we noted a significant difference depending on the X-ray energies (compare Si-K and Au-L data in fig. 1). By further investigating this issue we found that the Beryllium specimen carrier inside the specimen holder may turn transparent for high enough X-ray energies (e.g. Au-L). In other words, the amount of shadowing not only depends on tilt angles and specimen positions but also on the energy of the X-ray line of interest (see fig. 2).

Once the detector positions are known the shadowing effects can be taken into account and their influence on quantitative results can be corrected. In this paper we characterize potential effects and systematic errors they introduce, which are relevant to conventional EDXS work as well as analytical tomography experiments. The procedures described will transform EDXS on a multi-detector system from qualitative analysis to full quantitative analysis.

 

Acknowledgements:

We greatly acknowledge the help of Dr. Bernd Oberdorfer, Austrian Foundry Research Institute (ÖGI), Leoben, Austria for performing the X-ray tomography experiments, which were funded by the Austrian Research Promotion Agency (FFG) (project OptimatStruct 839958). The authors also want to thank the Nanoinitiative Austria (Austrian Research Promotion Agency, FFG) for financial support as part of this work was done in the NILaustria cluster (project NILecho II 830269).

 

[1] T. C. Lovejoy, Q. M. Ramasse, M. Falke, A. Kaeppel, R. Terborg, R. Zan, N. Dellby, and O. L. Krivanek, “Single atom identification by energy dispersive x-ray spectroscopy,” Appl. Phys. Lett., vol. 100, no. 15, p. 154101, 2012.

[2] T. J. A. Slater, A. Janssen, P. H. C. Camargo, M. G. Burke, N. J. Zaluzec, and S. J. Haigh, “STEM-EDX tomography of bimetallic nanoparticles: A methodological investigation,” Ultramicroscopy, vol. 162, pp. 61–73, 2016.

[3] P. Schlossmacher, D. O. Klenov, B. Freitag, H. S. von Harrach, and A. Steinbach, “Nanoscale chemical compositional analysis with an innovative S/TEM-EDX system,” Microsc. Anal., vol. 24, no. 7, pp. 5–8, 2010.


Johanna KRAXNER, Margit SCHÄFER, Otto RÖSCHEL, Manuel PALLER, Georg HABERFEHLNER, Gerald KOTHLEITNER, Werner GROGGER (Graz, Austria)
Salle Bellecour 1,2,3

"Thursday 01 September"

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MS6-III
10:15 - 12:30

MS6 : Oxide-based, Magnetic and other Functional materials
SLOT III

Chairpersons: Etienne SNOECK (Chairperson, CEMES, Toulouse, France), Maria VARELA (Chairperson, Madrid, Spain)
10:15 - 10:45 #8367 - MS06-S83 Split-illumination Electron Holography Applied to Electrostatic Potential Analyses of Oxide Heterojunctions with Polar Discontinuity.
Split-illumination Electron Holography Applied to Electrostatic Potential Analyses of Oxide Heterojunctions with Polar Discontinuity.

   Electron holography using interference of electron wave is one of quantitative microscopic techniques to visualize electromagnetic fields at nanometer scale. The long standing problem in this method was that the observable area was limited near the sample edge. To solve this problem, we developed split-illumination electron holography [1]. In this method, a coherent electron wave is separated into two coherent waves (object and reference waves) using biprism placed in the illumination system. The coherence degree of these electron waves do not change when they are separated. This makes it possible to achieve high precision holographic observation of an area far from the sample edge. As one of applications, electrostatic potential analysis of oxide heterojunctions with polar discontinuity will be presented.

   The discovery of the two-dimensional interface conduction in the LaAlO3/SrTiO3 (LAO/STO) heterojunction with polar discontinuity made a revival of the interest on the polar interface [2]. The emergence of high-mobility in LAO/STO is generally explained by the polar catastrophe scenario. Although the spontaneous electric polarization due to this charge redistribution was theoretically predicted, the existence of the mobile charges made it difficult to confirm the spontaneous polarization in LAO/STO junction. We explored oxide heterojunctions where the spontaneous polarization plays a dominant role in the charge screening and selected the LaFeO3 (LFO)/STO as target interface. Figure 1 shows two types of atomic sequences at the interfaces and reversal of electrostatic potential slopes in LFO. The results indicate that the originally non-polar LFO are converted into polar as a consequence of the polar catastrophe [3].

 

References

[1] T. Tanigaki, Y. Inada, S. Aizawa et al., Appl. Phys. Lett. 101, 043101 (2012).

[2] A. Ohtomo and H. Y. Hwang, Nature 427, 423 (2004).

[3] M. Nakamura, F. Kagawa, T. Tanigaki et al., Phys. Rev. Lett. 116, 156801 (2016).

 

Acknowledgements

This work was partly supported by the Japan Society for the Promotion of Science (JSPS) through its Funding Program for World-Leading Innovative R&D on Science and Technology (FIRST Program), Grant-in-Aid for Young Scientists (A) (15H05426) and that for Scientific Research (24226002) from the MEXT of Japan, and CREST from Japan Science and Technology Agency (JST).


Toshiaki TANIGAKI (Saitama, Japan), Masao NAKAMURA, Fumitaka KAGAWA, Hyun Soon PARK, Tsuyoshi MATSUDA, Daisuke SHINDO, Yoshinori TOKURA, Masashi KAWASAKI
Invited
10:45 - 11:00 #6045 - MS06-OP284 Complex magnetic distribution of diameter-modulated FeCoCu nanowires resolved by Electron Holography.
Complex magnetic distribution of diameter-modulated FeCoCu nanowires resolved by Electron Holography.

In the last years, diameter-modulated (D-M) ferromagnetic nanowires (NWs) have been intensively studied to evaluate their efficiency to control the motion of domain walls (DWs) along these one-dimensional nanostructures by the application of magnetic field or the injection of electrical current, which is essential for spintronic applications in the field of information storage, sensors and logical operations [1]. Preliminary studies in D-M NWs have been performed using theoretical and experimental procedures [2-4] in individual and isolated NWs and they have provided a first approach of the spin configuration in these systems, obtaining a non-trivial interpretation.

In this work, we have exploited the potential of electron holography technique (high spatial resolution, high sensitivity and quantitative capability in volume) for achieving a full picture of the magnetic distribution in cylindrical D-M FeCoCu NWs. These NWs were prepared by filling self-assembled cylindrical D-M nanochannels of anodic aluminum oxide templates. The D-M geometry of the polycrystalline NWs consist of alternating segments of small (100 nm) and large (144 nm) diameters, with segment lengths ranging between 1000 to 300 nm. At remanence, the high-shape anisotropy of the NWs induces a single-domain state where the spins are mainly oriented along the NW axis, with the possibility to create a small closure domain in large-diameter tips. The transition zones where the diameter is varied induce a complex demagnetizing field where the stray field follows a flux-closure configuration around the large-diameter segments and a magnetic coupling between them around small-diameter segments (See Fig 1). The complex configuration of the demagnetizing field can be understood if we treat the D-M transition zones as magnetic charges. The interpretation of the magnetic distribution by EH experiments was compared with micromagnetic simulation finding a very good agreement (see Fig 2). In addition, In-situ Lorentz microscopy experiments of the magnetization reversal process allowed evaluating the DW nucleation and propagate process by the application of magnetic fields. We found that a field-driven manipulation of DWs is not possible for the NWs in study. This “unsuccessful” result however helps us to take a step forward for the optimization of the geometry to reach the desired DW manipulation.

 

 

References

[1] Magnetic Nano- and Microwires edited by M. Vázquez. Woodhead Publising Series in Electronic and Optical Materials (2015).

[2] F. Tejo et al. Journal of Applied Physics 115 (2014) 17D136

[3] E. M. Palmero et al. Nanotechnology 26 (2015) 461001

[4] O. Iglesias-Freire et al. Nanotechnology 26 (2015) 395702

 

Acknowledgements

This work has been supported by ESTEEM2 (Reference No. 312483), “Investissement d’Avenir” (Reference No. ANR-10-EQPX-38-01) and CPER programs.


Luis Alfredo RODRÍGUEZ (Oviedo, Spain), Cristina BRAN, David REYES, Christophe GATEL, Eider BERGANZA, Manuel VÁZQUEZ, Agustina ASENJO, Etienne SNOECK
11:00 - 11:15 #6263 - MS06-OP290 Magnetic Skyrmions in an FeGe Nanostripe Revealed by in situ Electron Holography.
Magnetic Skyrmions in an FeGe Nanostripe Revealed by in situ Electron Holography.

Intense research interest in magnetic skyrmions is presently driving the development of new fundamental concepts and applications1. Magnetic skyrmions are particle-like, topologically protected swirling spin textures, in which the peripheral spins are oriented vertically, the central spins are oriented in the opposite direction and the intermediate spins rotate smoothly between these two opposite orientations, as shown in the inset to Fig. 1(a). In a range of applied magnetic fields, skyrmion lattices form in certain chiral magnets, such as B20-type magnets, in which a lack of inversion symmetry and spin-orbit coupling gives rise to the Dzyaloshinskii-Moriya interaction. The typical sizes of skyrmions are between 3 and 100 nm. For technically relevant applications, a full understanding of skyrmion formation, stability, manipulation and annihilation is required. Recent experiments have demonstrated the formation of magnetic skyrmion chains in geometrically confined nanostructures2, as shown schematically in Fig. 1(b). A critical step towards real-world device applications involves the development of an approach that can be used to controllably create, manipulate and annihilate skyrmions in magnetic nanostructures, including wire-like geometries.

Real-space imaging of complex skyrmion spin configurations using Lorentz microscopy (LM) in the transmission electron microscope (TEM) has enabled the direct observation of skyrmion lattice formation and transformations between different magnetic states with nanometre spatial resolution3. However, the finite size and the inherently weak magnetization of such magnetic nanostructures imposes great experimental challenges for LM. In particular, Fresnel fringe contrast at the specimen edge makes extremely difficult to use LM to obtain magnetic signals in samples that have lateral dimensions of below 10 nm. In contrast, off-axis electron holography (EH) in the TEM, which allows electron-optical phase images to be recorded directly with nanometre spatial resolution and high phase sensitivity, provides easier access to magnetic states in nanostructures. Digital acquisition and analysis of electron holograms and sophisticated image analysis software are then essential in studies of weak and slowly varying phase objects such as magnetic skyrmions4.

Here, we use both LM and EH to study magnetic skyrmions in a B20-type FeGe nanostripe. The use of liquid nitrogen specimen holder (Gatan model 636) allows the specimen temperature to be varied between 95 and 370 K, and the objective lens of the microscope (FEI Titan 60-300) can be used to apply magnetic fields to the specimen of 0 to 1.5 T. The aim of our study is to resolve the fine magnetic structures of geometrically confined skyrmions and to understand their formation process. Figures 2(a-b) show Lorentz images of a typical FeGe nanostripe, in which a helix to skyrmion transition occurs in response to an applied magnetic field. Figure 2(c) shows a colour-contour composite map derived from a phase image recorded using EH. The slight asymmetry of the contours results from the wedge-shaped specimen thickness profile. Artefacts associated with local changes in specimen thickness in such images can be removed from such images by separating the mean inner potential contribution from the magnetic contribution to the phase, for examples by evaluating the difference between phase images recorded at two different specimen temperatures.

References:

1 N. Nagaosa and Y. Tokura, Nat. Nanotechnol. 8, 899 (2013).

2 H. Du and et al., Nat. Commun. 6, 8504 (2015).

3 X.Z. Yu and et al., Nature 465, 901 (2010).

4 H.S. Park and et al., Nat. Nanotechnol. 9, 3 (2014).

5 Finacial support from European Research Council (ERC) Advanced Grant: IMAGINE is acknowledged. 


Zi-An LI (Duisburg, Germany), András KOVÁCS, Amir TAVABI, Chiming JIN, Haifeng DU, Mingliang TIAN, Michael FARLE, Rafal DUNIN-BORKOWSKI
11:15 - 11:30 #6927 - MS06-OP296 Novel spectroscopy with atomic-size aberrated electron probes in stem.
Novel spectroscopy with atomic-size aberrated electron probes in stem.

it has been theoretically argued that atomic-size electron probes with customized phase distributions can detect electron magnetic circular dichroism (EMCD) [1].  Based on this prediction we have recently shown that deliberately aberrated electron probes in scanning transmission electron microscopy (STEM) can be utilized to obtain chiral dichroic signals in materials via electron energy-loss spectroscopy (EELS) with high spatial resolution [2].

The experiments were performed in an aberration-corrected Nion UltraSTEMTM 100, equipped with a cold field emission electron source and a corrector of third and fifth order aberrations, operating at an accelerating voltage of 100kV [3].  EEL spectra were collected using a Gatan Enfina spectrometer, with 0.3 eV/channel dispersion, giving an energy resolution of 0.9 eV.  The convergence semi-angle for the incident probe and the EELS collection semi-angle were 30 mrad and 48 mrad, respectively. 

Figure 1 shows two examples of drift (affine)-corrected Z-contrast images and denoised EEL spectra that were acquired simultaneously from the room temperature C-type antiferromagnet LaMnAsO.  The data were acquired with the beam along the c-axis using a corrected electron probe (Fig. 1a to 1c) and the C34 = 15 μm aberrated probe (Figs. 1d to 1f) [2].  

 A clear EMCD signature in the EEL spectra, defined as (Mn↑ - Mn↓) presenting a change of sign in its integrated intensity between the L3 and L2 peaks, is only visible for the Mn L-edge acquired using the C34 aberrated probe. In Figs. 1e and 1f, this signal, shown in green, is positive at the L3 peak and negative at the L2 peak.  For comparison, the Mn signal in 1b and 1c, shown in grey, does not display this distinctive signature, with both positive and negative components on both peaks.

We will discuss the experimental conditions necessary to reveal the magnetic ordering of individual atomic columns and atomic-size defects in materials [4].

[1] J. Rusz, J. C. Idrobo, and S. Bhowmick, Phys. Rev. Lett. 113, (2014) p. 145501.

[2] J.C. Idrobo et al., submitted (2016).

[3] O. L. Krivanek, et al.,Ultramicroscopy 108, (2008). p. 179-195.

[4] Research supported by Oak Ridge National Laboratory’s Center for Nanophase Materials Sciences (CNMS), which is a U.S. Department of Energy (DOE), Office of Science User Facility (JCI), by the Swedish Research Council and Swedish National Infrastructure for Computing (NSC center) (JR), and by the Materials Sciences and Engineering Division, Office of Basic Energy Sciences, U.S. DOE (MAM, CC, ARL), and by UT-Battelle, LLC, under Contract No. DE-AC05-00OR22725 with the U.S. Department of Energy (CTS, RRV). 


Juan Carlos IDROBO (Oak Ridge, USA), Ján RUSZ, Jakob SPIEGELBERG, Michael A. MCGUIRE, Christopher T. SYMONS, Ranga Raju VATSAVAI, Claudia CANTONI, Andrew R LUPINI
11:30 - 11:45 #6249 - MS06-OP288 Quantifying the hole distribution in cuprates: Atomic-resolution near-edge fine-structures of the superconductor Sr3Ca11Cu24O41.
Quantifying the hole distribution in cuprates: Atomic-resolution near-edge fine-structures of the superconductor Sr3Ca11Cu24O41.

Sr14-xCaxCu24O41 is a fascinating member in the family of cuprates, not only because of its peculiar crystal structure where two distinct units, corner-shared CuO2 chains and edge-shared Cu2O3 ladders, coexist within the unit cell but also because it is the only known superconductor with a non two-dimensional CuO2 plane structure. Indeed, the superconducting state theoretically predicted by E. Dagotto and T.M. Rice [1] was first observed experimentally in Sr0.4Ca13.6Cu24O41.84 below Tc = 12 K and for pressures starting from 3 GPa [2].

            Independently of the Ca composition, Sr14-xCaxCu24O41 is an intrinsically hole-doped compound with 6 holes per formula unit, leading to an average Cu valence of +2.25. A central issue for understanding the mechanisms leading to superconductivity in this compound is therefore to measure accurately the carrier distribution among CuO2 chains and Cu2O3 ladders. This task has been undertaken shortly after the discovery of superconductivity in this system [3] but is still a matter of intense debate due to the very scattered nature of the results. For instance, depending on the technique, reported hole concentrations in the ladder layers of Sr3Ca11Cu24O41 vary from ~1 to ~4.5 holes/formula unit [4,5].

            All these results have been obtained with techniques that have a relatively poor spatial resolution ranging from several hundred nanometers to a few micrometers. In this work, we exploit the unmatched spatial-resolution of STEM-EELS to measure local hole concentration in superconducting Sr3Ca11Cu24O41 at the atomic scale and provide, for the first time, a real-space measurement where spatial separation between chains and ladders is achieved [6]. As shown by F.C. Zhang and T.M. Rice [7], in doped cuprates, the hole strongly binds to the four O atoms surrounding the central Cu through Cu3d-O2p in-plane sigma hybridization within the CuO4 plaquettes. As such, the local hole concentration can be monitored very efficiently through the O-K pre-edge structures as shown in Figure 1. These experimental results, combined with inelastic scattering calculations, demonstrate unambiguously that holes lie preferentially within the CuO2 chains of the structure.

            In summary, this work illustrates how the combination of near-edge fine-structure analyses with atomic resolution in the aberration corrected STEM can improve the understanding of the electronic properties of complex oxides, such as Cu-based superconductors [8].

 

[1] E. Dagotto and T.M. Rice, Science 271 (1996) 618.

[2] M. Uehara et al., J. Phys. Soc. Jpn. 65 (1996) 2764.

[3] T. Vuletic et al., Physics Reports 428 (2006) 169.

[4] M.-J. Huang et al.  Phys. Rev. B 88 (2013) 014520.

[5] A. Rusydi et al., Phys. Rev. B 75 (2007) 104510.

[6] M. Bugnet et al., Science Advances 2 (2016) e1501652.

[7] F.C. Zhang and T.M. Rice, Phys. Rev. B 37 (1988) 3759.

[8] The experimental work has been performed at the Canadian Centre for Electron Microscopy, a national facility supported by NSERC, the Canada Foundation for Innovation and McMaster University. Financial support by the Austrian Science Fund (FWF) under grant nr. J3732-N27 is gratefully acknowledged.


Matthieu BUGNET, Guillaume RADTKE (IMPMC, Paris Sorbonne), Stefan LÖFFLER, Peter SCHATTSCHNEIDER, David HAWTHORN, Hanna A. DABKOWSKA, Graeme M. LUKE, George A. SAWATZKY, Gianluigi A. BOTTON
11:45 - 12:00 #6151 - MS06-OP286 Combined EELS-EDX analysis of nanoscale memristive NbOx and AlOx layers.
MS06-OP286 Combined EELS-EDX analysis of nanoscale memristive NbOx and AlOx layers.

Memristive devices – electronic components that can change their resistance depending on their history of operation – offer a new approach in various fields of digital computing. [1] This advancement in information technology is being pursued in order to satisfy the ever increasing need for computing power on the one hand and to enable the imitation of neuronal networks like the hippocampus on the other. The conductive properties in memristive devices are typically governed by atomistic effects like cation or anion movement: the change of resistance state is dependent on the nanoscopic layout. The mechanisms, however, behind a non-binary, remanent, reversible and repeatable change of electrical resistance are not well understood. In this work we present the results of dedicated transmission electron microscopy (TEM) analysis involving highly precise electron energy loss spectroscopy (EELS) methods in a complex oxide multilayer stack of only about ten nanometer total thickness. The layer sequence Nb/Al/Al2O3/NbxOy/Au (from bottom to top; Fig. 1 a) was deposited onto a Si/SiO2 substrate. The memristive properties of such junctions were recently investigated. [2]
Combined energy dispersive X-ray spectroscopy (EDX) and EELS experiments allow for analyses of both light and heavy metals as well as the reliable detection of oxygen. In contrast to the deposited layer sequence we observe an entire oxidation of the metallic Al and even a partial oxidation of the Nb bottom electrode. (Fig. 1 b) and Fig. 2) Furthermore, the results imply the abundant presence of oxygen vacancies apparent from the O K-peak in the spectrum of the amorphous Al oxide layer which acts as a tunnel barrier. (Fig. 1 c) These puzzling results will be discussed in the framework of former studies on the Nb-Al overlayer technique. [3]
Different conduction mechanisms are being discussed based on the findings and an outlook onto further research by electronic structure calculation is given. The results shed light on the fundamentals of tunnel barrier-based memristive devices which are compatible to state-of-the-art CMOS technology and were already built into integrated circuits.

Acknowledgements: The research was conducted within the DFG program FOR2093 “Memristive devices for neuronal networks”. This research has received funding from the European Union within the 7th Framework Program (FP7/2007-2013) under Grant Agreement no. 312483 (ESTEEM2).

[1] G. S. Rose, “Overview: Memristive devices, circuits and systems,” Circuits and Systems (ISCAS), Proceedings of 2010 IEEE International Symposium, Paris, 2010, 1955-1958.
[2] M. Hansen, M. Ziegler, L. Kolberg, et al. “A double barrier memristive device”. Scientific Reports. 2015, 5, 13753.
[3] J. Kwo, G. K. Wertheim, M. Gurvitch and D. N. E. Buchanan, “X‐ray photoemission spectroscopy study of surface oxidation of Nb/Al overlayer structures,” Appl. Phys. Lett. 1982, 40, 675.


Julian STROBEL (Kiel, Germany), Mirko HANSEN, Georg HABERFEHLNER, Gerald KOTHLEITNER, Martin ZIEGLER, Hermann KOHLSTEDT, Lorenz KIENLE
12:00 - 12:15 #6315 - MS06-OP291 Discrete spectroscopic electron tomography: using prior knowledge of reference spectra during the reconstruction.
Discrete spectroscopic electron tomography: using prior knowledge of reference spectra during the reconstruction.

A three-dimensional (3D) characterization of the morphology of nanostructures can nowadays routinely be obtained using electron tomography. [1] Nevertheless, resolving the chemical composition of complex nanostructures in 3D remains challenging and the number of studies in which electron energy loss spectroscopy (EELS) is combined with tomography is limited. [2-5] In most of these studies, two dimensional (2D) elemental maps of the object are first extracted at each tilt angle and used as an input for tomographic reconstruction. [2,3] An alternative approach is to reconstruct each energy loss separately yielding a 4D data cube where an EELS spectrum can be extracted from each 3D voxel. [4,5] During the last decade, dedicated reconstruction algorithms have been developed for HAADF-STEM tomography which use prior knowledge about the investigated sample. For example, the discrete algebraic reconstruction technique (DART) is based on the idea that a 3D HAADF-STEM reconstruction of a (nano)material only contains a limited number of grey values. [6] In this manner, several artefacts, typical to electron tomography, are mininized leading to reconstructions with a higher reliability. An additional advantage of discrete tomography is that the quantification of the final reconstruction is straightforward since the segmentation is part of the reconstruction algorithm. Here, we will extend discrete tomography to its application for spectroscopic datasets where it is assumed that the experimental spectrum of each reconstructed voxel is a linear combination of a well-known set of references spectra. 

 

To investigate the performance of discrete spectroscopic electron tomography, a phantom object is made resembling a Ce4+ nanoparticle with a reduced Ce3+ edge as presented in Figure 1a. A tilt series of projected spectrum images are simulated and different amounts of Poisson noise are applied to the projection data. These datasets are used as input for two conventional reconstruction approaches and the discrete spectroscopic reconstruction technique. In the first method, elemental maps are first extracted which are used to reconstruct the individual chemical elements. The second method first reconstructs all energy losses yielding a complete 4D dataset. The reconstructions of the different elements are then obtained using a spectrum fitting procedure. The average reconstruction error as a function of the signal to noise ratio (SNR) is displayed in Figure 1b. This graph indicates that  discrete spectroscopic electron tomography, displayed in red, provides superior results especially for datasets with a relatively low SNR. Therefore, it is well suited for the 3D reconstruction of small dopants in nanoparticles typically having a low SNR in the projected spectrum images.

 

Next, we investigated the spatial distribution of Fe dopants in Fe:Ceria nanoparticles. During the tomographic reconstruction, reference spectra for Fe2+, Ce3+ and Ce4+ are used as prior knowledge. Visualizations of the final reconstructions are presented in Figure 2. As indicated by the white arrows, we can observe that the presence of the Fe2+ dopants is correlated with a reduction of the Ce atoms from Ce4+ towards Ce3+. This indicates that both the Ceria nanoparticle and the Fe dopants are reduced by the generation of oxygen vacancies. In addition, from the comparison of the slices through the HAADF-STEM reconstruction and the Fe2+ reconstruction (Figure 2f), it can be observed that most of the Fe dopants are located near the voids of the nanoparticle.

 

[1] P.A. Midgley, R.E. Dunin-Borkowski, Nat. Mater. 8 (2009) 271-280

[2] L. Yedra, et al., Ultramicroscopy 122 (2012) 12-18

[3] O. Nicoletti, et al., Nature 502 (2013) 80-+

[4] G. Haberfehlner, et al., Nanoscale 6 (2014) 14563-14569

[5] B. Goris, et al., ACS Nano 8 (2014) 10878-10884

[6] K.J. Batenburg, et al., Ultramicroscopy 109 (2009) 730-740

[7] The authors acknowledge funding from the Research Foundation Flanders (project number G038116N and a post-doctoral grant to B.G.). S.B. acknowledges the European Research Council, ERC grant N°335078 – Colouratom.


Bart GORIS (Antwerp, Belgium), Maria MELEDINA, Stuart TURNER, Zhichao ZHONG, Joost BATENBURG, Gustaaf VAN TENDELOO, Sara BALS
12:15 - 12:30 #6638 - MS06-OP292 Resolving the atomic and electronic structures of bismuth iron garnet thin films.
Resolving the atomic and electronic structures of bismuth iron garnet thin films.

Bismuth iron garnet (Bi3Fe5O12- BIG) presents large interests in both fundamental studies and applications thanks to a plethora of fascintating physical properties. Among them, BIG is ferrimagnetic with a relatively high magnetization of 1600 G at 300 K and presents magnetic ordering temperature from 650 K to 700 K [1]. One of its most useful properties is the giant Faraday rotation (~105 deg/cm at 550 nm) making it potential for magneto-optical recording and the fabrication of non-reciprocal magneto-optical devices based on magnetophotonic crystals [2]. More recently, a strong magneto-electric coupling at room temperature has been reported in BIG thin films opening new perspectives for an electric control of the magnetization [3].

Contrary to its parent structures, e.g. the well-known yttrium iron garnet (YIG), this material can only be elaborated in thin film form using non-equilibrium growth techniques. BIG films were grown onto distinct isostructural Y3Al5O12 (YAG) and substituted-Gd3Ga5O12(SGGG) substrates; each is supposed to induce a compressive epitaxial strain depending on the lattice mismatch, i.e. approx. of 5% and 1%, respectively. The interplay between strain engineering and control of its promising magnetic and transport properties is of main interest in these systems, however no bulk reference is available yet for detailed structural and magnetic studies. Hence resolving the atomic and electronic structures of BIG thin films remains a key challenge to understand better their structure-property relationship. Here we use advanced spectromicroscopy studies combining a Cs-corrected scanning transmission electron microscope (STEM), the NION UltraSTEM200, with high-energy resolved electron energy-loss spectroscopy (EELS) experiments to characterize these BIG thin films, from their structural aspect to their elemental and spectroscopic properties.

Peculiar relaxation mechanisms are highlighted in both BIG/substrate systems by Geometric Phase Analysis (GPA) based on low-magnified high-resolution HAADF-STEM images. All the films are epitaxially grown and relaxed from thicknesses above a few tens of nanometers. Combined GPA studies and atomically-resolved HAADF-STEM images at the interfaces reveal how BIG can accommodate different lattice mismatches through a variety of growth mechanisms. Fig.1 gathers the dominant scenarii observed in BIG thin films with the typical “cube-on-cube” growth at the BIG/SGGG interface or the more complexed Vernier misfit alternating with tilted grains presenting a network of dislocations in the BIG/YAG system. The evolution of the local in-plane and out-of-plane lattice parameters confirms a rather strong compressive strain of the BIG film grown onto SSGG occurring at the first few interfacial unit cells. Whereas an immediate relaxation is observed at the BIG/YAG interface with a relatively uniform evolution of both local in-plane and out-of-plane parameters revealing a quasi-absence of strain thanks to the particular coexistence of tilted grains and well-relaxed Vernier misfit.

Finally, all BIG films seem to preserve the garnet cubic structure (Fig. 2 a). From a spectroscopic study, no cation interdiffusion is evidenced when probing the film/substrate interface down to the scale of the atomic columns, and only the signature of Fe3+ valence state is detected confirming the absence of oxygen deficiency. Besides, the evolution of the O-K near-edge fine-structures through the BIG/YAG interface enables us to figure out directly possible electronic reconstruction at the interface by probing the Fe 3d - O 2p hybridization (Fig. 2b).

[1] E. Popova et al., J. Magn. Magn. Mater. 335, 139 (2013).

[2] M. Deb, et al. J. Phys. D: Appl. Phys. 45, 455001 (2012)

[3] E. Popova et al. submitted


Laura BOCHER (LPS - STEM, Paris), Adrien TEURTRIE, Elena POPOVA, Bénédicte WAROT-FONROSE, Niels KELLER, Odile STÉPHAN, Alexandre GLOTER
Salle Prestige Gratte Ciel

"Thursday 01 September"

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MS5-II
10:15 - 12:30

MS5: Energy-related materials
SLOT II - Battery materials

Chairpersons: Wolfgang JÄGER (Chairperson, Kiel, Germany), Joachim MAYER (Chairperson, Aachen, Germany), Philippe MOREAU (Chairperson, IMN, Nantes, France)
10:15 - 10:45 #6672 - MS05-S78 Atomic Resolution STEM and Spectroscopic Characterization of Battery Related Materials.
Atomic Resolution STEM and Spectroscopic Characterization of Battery Related Materials.

The properties of lithium battery strongly depend on the diffusion of lithium ions during charge/discharge process. Since this behavior determines the stability, lifetime and reliability, direct visualization of Li site is required to understand the mechanism of the diffusion of lithium ions. Annular bright field (ABF) scanning transmission electron microscopy (STEM) is useful imaging technique to directly observe the both light and heavy element columns [1]. In this technique, an annular detector is located within the bright-field (direct-scattered) region, and the columns display absorptive-type contrast. Figure 1 shows ABF STEM images observed from [001] of (a) olivine LixFePO4 and (b)delithiated olivine (FePO4). It can be seen that Li column contrast appears in LixFePO4, but disappears in FePO4. Fig.1 (c) (d) shows HAADF STEM  images observed from the same region of (a) and (b), indicating that the cation frame work columns are almost the same before and after delithiation [2]. In this study, light elements in several lithium battery related materials are directly observed by ABF STEM, and the mechanism of lithiation/delithiation is discussed based on the observation results.

The properties of thin-film batteries is influenced by the atomic structures of the embedded interfaces, such as electrode/electrolyte and electrode/current-collector interfaces, as well as the grain and domain boundaries. Detailed analyses of these interface structures, which provides insights into formation mechanisms of the interfaces and the effects of microstructure on electrochemical properties, is essential for understanding the mechanism of lithiation /delithiation and for obtaining the guideline to design the thin film devices. In this study, the epitaxial growth mechanism of a typical cathodic LiMn2O4 thin film is investigated by exploring the detailed structural and compositional variations in the vicinity of the film/substrate interfaces. STEM observation shows the LiMn2O4 film forms an atomically flat and coherent heterointerface with the Au(111) substrate, but that the crystal lattice is tetragonally distorted with a measurable compositional gradient from the interface to the crystal bulk [3]. The growth mechanism is interpreted from the chemical and physicomechanical effects, which is related to the complex interaction between the internal Jahn-Teller distortions induced by oxygen non-stoichiometry and the lattice misfit strain.

In addition, the microstructures for La2/3-xLi3xTiO3 (LLTO) and La(1-x)/3LixNbO3 (LLNO) electrolytes are characterized by ABF STEM. It was found that the unique structures of the domain boundaries (DBs) in LLTO affect the Li-ion mobility and ionic conductivity. DBs in LLTO are consisted of two types: frequently occurring 90° rotation DBs and a much less common antiphase-type boundary [4]. The 90° DBs are found to have coherent interfaces consisting of interconnected steps that share La sites, with occupancies of La sites higher than in the domain interiors. The DBs show different degrees of lattice mismatch strain depending on Li content. The lattice strain and resultant Li and O vacancies and the high La occupancy at DBs are considered to be the reason for lower interdomain Li-ion mobility, which has a deleterious effect on the overall Li-ion conductivity. LLNO is found to have complex modulated crystal structures with partially ordered distributions of A cations and vacancies. This involves a long-range layer-ordering of A cations into alternating La/Li-rich and La/Li-free layers parallel to (001)p, and a short-range sinusoidal columnar ordering of A cations within the La-rich layers.

 References

[1] S. D. Findlay et al., Appl. Phys. Lett., 95, 19191 (2009); [2] A. Nakamura et al., Chem. Mater., 26, 6178 (2014) ; [3] X.Gao, et.al., Adv.Mater.Inter., 1400143 (2014); [4] X. Gao, et. al., J. Mater. Chem. A, 3,3351 (2015). [5] This research is supported by Japan Fine Ceramics Center and Toyota Motor Co.. A part of this work was also supported by the Research and Development Initiative for Scientific Innovation of New Generation Batteries (RISING) project from the New Energy and Industrial Technology Development Organization (NEDO), Japan.


Yuichi IKUHARA (tokyo, Japan)
Invited
10:45 - 11:00 #6875 - MS05-OP276 In situ study of the degradation phenomena induced by lithiation/delithiation cycle of a composite Si-based anode by the mean of X-ray tomography.
In situ study of the degradation phenomena induced by lithiation/delithiation cycle of a composite Si-based anode by the mean of X-ray tomography.

In the context of increasing energy density of lithium-ion batteries, silicon is of high interest with his high theoretical gravimetric capacity, ten times higher than the commonly used carbon. However the use of silicon is faced to huge hurdles such as poor life time of those electrodes and not sufficient sustainability versus high current density (commonly used in EVs and HEVs).

The poor cycle life of Si-based electrodes is mainly due to their large volume variation upon cycling, inducing electrical disconnections and instability of the solid electrolyte interface (SEI). The study of the morphological variation of Si-based electrodes upon cycling is thus highly relevant to evaluate their degradation and to optimize their formulation and architecture. However, this is challenging considering their complex three-dimensional structure and their major evolution with cycling. Furthermore, samples are fragile and reactive and therefore difficult to prepare for bulk observations. In this context, X-ray tomography appears as an effective non-destructive and 3D observation tool.

 

In this communication, in-situ synchrotron  X-ray tomography analyses are performed on Si-based electrodes prepared from a pH3 buffered slurry of ball-milled Si powder + carbon black + carboxymethylcellulose (CMC) (80/12/8) loaded into a carbon paper (AvCarb EP40) by impregnation, in order to get a clear view of the 3D architecture of the electrode with cycling. From the initial state, represented in Fig. 1, to fully lithiated and then fully delithiated state, X-ray scans were performed each thirty minutes to continuously follow the morphological evolution of the electrode structure.

After an appropriate image reconstruction and segmentation procedure, phase identification has been achieved. Moreover the separation of a void porosity and an electrolyte phase was possible and the quantifying of the pore size distribution evolution with cycling, as shown in Fig. 2.

Also key morphological parameters of these Si-based electrodes and their evolution with cycling are determined, such as the electrode thickness and volume fraction of the pores as shown in Fig. 3. Those results may greatly enlighten the understanding of degradation phenomena in the Si-based electrodes and help develop new composite electrodes formulation for sustainable applications.


Victor VANPEENE (Lyon), Eric MAIRE, Aurélien ETIEMBLE, Lionel ROUÉ, Anne BONNIN
11:00 - 11:15 #5315 - MS05-OP263 Quantitative electron diffraction tomography for the structure solution of cathode materials for Li-ion batteries.
Quantitative electron diffraction tomography for the structure solution of cathode materials for Li-ion batteries.

Quantitative electron diffraction tomography (EDT) is a perfect tool for studying electrode materials for Li-ion batteries due to its ability to obtain diffraction data from submicron crystals (typically 100-200 nm), sensitivity to “light” atoms as Li and reduced dynamical effects (enhanced by the intrinsic property of the electrode materials to comprise only lightest possible elements to maximize the capacity). Here we demonstrate applications of EDT to the crystal structure analysis of polyanion cathodes, including location and occupancy refinement of the Li positions.

We applied EDT  for monitoring the deintercalation process in LiMn0.5Fe0.5PO4 (LMFP) olivine [1]. We investigated a pristine and two delithiated phases (mid (3.7 V vs. Li/Li+) and fully-charged (4.2 V), since upon charge two first-order phase transformations take place). All structures keep the Pnma space group and unit cell metrics and no sign of local ordering was found. The difference Fourier maps of the electrostatic potential calculated from EDT data, allow to localize the Li atoms (Fig 1). The refined occupancies of the Li positions for all samples are in excellent agreement with the Li contents measured from the E-x dependence obtained with galvanostatic cycling. Regarding the role of Jahn-Teller distortion due to Mn3+ in the delithiation mechanism, this effect is not of cooperative nature, since the octahedral distortions in pristine and fully-charged samples vary insignificantly (5%).

EDT sheds light on the family of (Li,A)-ion cathode materials that are obtained by subsequent chemical or electrochemical exchange of Na/K by Li. This allows obtaining new polymorphs that are not attainable by direct synthesis due to thermodynamic reasons. We synthesize new KVPO4F fluorophosphates with KTiOPO4 (KTP) structure, having a 3D system of continuous spatial cavities and two potassium positions [2]. Upon charge up to 5.0 V vs Li/Li+ the K1 site becomes empty whereas residual potassium (17%) resides in the K2 site (Fig. 2). At the same time, the structure changes from noncentrosymmetric (Pna21) to centrosymmetric (Pnan). After lithiation, the K2 sites are shared by K and Li but K1 still remains empty. Li occupies a new Li3 position having [4 + 2] coordination with four short 1.99−2.14 Å Li3−O bonds. Both Li sites reside in the channels along the b axis and form a row of Li atoms.

The discussed exapmles show that EDT is a relible technique for the crystal structure solution and refinement. It can be used as a routine method for the study of cathode materials, since no special sample preparation is required. Furthermore, EDT provides valuable information of the lithium atom positions and occupancies.

Acknowledgements

J. Hadermann, O. M. Karakulina and A. M. Abakumov acknowledge support from FWO under grant G040116N. S.S. Fedotov acknowledges support from RFBR (grant 16-33-00211 mol_a).

[1]      O.A. Drozhzhin, V.D. Sumanov, O.M. Karakulina, A.M. Abakumov, J. Hadermann, A.N. Baranov, K.J. Stevenson, E. V Antipov, Electrochim. Acta 191 (2016) 149.

[2]      S.S. Fedotov, N.R. Khasanova, A.S. Samarin, O.A. Drozhzhin, D. Batuk, O.M. Karakulina, J. Hadermann, A.M. Abakumov, E. V. Antipov, Chem. Mater. 28 (2016) 411.


Olesia KARAKULINA (Antwerp, Belgium), Stanislav FEDOTOV, Vasiliy SUMANOV, Oleg DROZHZHIN, Nellie KHASANOVA, Evgeny ANTIPOV, Artem ABAKUMOV, Joke HADERMANN
11:15 - 11:30 #5556 - MS05-OP264 In situ scanning and transmission electron microscopy experiments developed at the University of Picardy: a versatile approach optimized for the study of lithium-ion batteries and extended to the observation of plant tissues.
In situ scanning and transmission electron microscopy experiments developed at the University of Picardy: a versatile approach optimized for the study of lithium-ion batteries and extended to the observation of plant tissues.

Over the past fifteen years, the Platform of Electron Microscopy at the University of Picardy Jules Verne (PME UPJV) has been developing in situ scanning electron microscopy techniques to successfully observe polymer [1] and solid or liquid electrolyte lithium-ion batteries cycling in the scanning electron microscope (figure 1). In situ Electron Microscopy techniques allow to spot the slightest textural, chemical or structural modification of lithium-ion electrodes, interfaces and active materials.  Consequently, such innovative studies help electrochemists to design batteries with better performance through the selection/synthesis of the appropriate electrode materials and the control of the electrode/electrolyte interfaces upon cycling.

However, considering the 'resolution limit' of the SEM, electrochemists working on lithium-ion batteries tend towards in situ transmission electron microscopy to fulfill their ambition of atomic-scale observations of electrochemical cycling. Nevertheless, there are several technological bottlenecks in using such techniques. For instance restrictions imposed by the limited sample size and thickness (less than 100nm) and the requirement of high vacuum necessitate the use of adapted  strategies (all-solid-state batteries, ionic liquid as electrolyte, STM or liquid bias TEM holder)[2,3,4]. To address these issues, we undertook two different approaches:  cycling all-solid-state microbatteries with a Nanofactory STM holder [5] (figure 2) and cycling liquid electrolyte batteries with a Protochips liquid/bias Holder.

We are extending now the application of these developed methods at PME UPJV to perform in situ analysis of samples from another branch of natural science: Plant Biology (from seeds to biorefinery). The in situ electron microscopy analyses will be performed to characterize the role of plant specialized cell layers (figure 3) and lignocellulosic biopolymers and examine their modification as a result of seed germination, enzymatic modifications, micromechanical tests as well as plant pathogen interactions.

We gratefully acknowledge the Region of Picardy, The French National Research Agency, ALISTORE-ERI and the European Social Fund for their financial support.

References

[1]          Orsini et al., Int. J. Inorg. Mater. 2:6 (2000) 701.

[2]          Baer et al., J. Mater. Res. 25:8 (2010) 1541.

[3]          Huang et al., Science. 330:6010 (2010) 1515.

[4]          Yamamoto et al., Angew. Chem. Int. Ed. 49:26 (2010) 4414.

[5]          Brazier et al., Chem. Mat. 20:6 (2008) 2352.


Loic DUPONT (amiens cedex), Arnaud DEMORTIERE, Carine DAVOISNE, Arash JAMALI, Walid DACHRAOUI, Mattia GIANNINI, Fabien MIART, Damien MC GROUTHER, Rick BRYDSON
11:30 - 11:45 #6163 - MS05-OP269 Low-loss STEM-EELS analysis of beam-sensitive lithium-ion negative electrodes.
Low-loss STEM-EELS analysis of beam-sensitive lithium-ion negative electrodes.

Silicon represents one of the most promising anode materials for next generation lithium-ion batteries. However its colossal volume expansion (up to 300%) upon electrochemical reaction with lithium repeatedly exposes fresh surfaces to electrolyte solvent oxidation1-2. This leads to very high irreversible capacities, compounded by the fact that parts of the silicon-based electrodes are progressively disconnected from both electrical and ionic transport networks as the solid electrolyte interface (SEI) accumulates. Deeper insight into these degradation phenomena is critical to engineer adequate electrodes and/or electrolytes.

 

Characterization of these electrodes has so far mostly focused on either bulk or surface analysis, both lacking spatial resolution. Little is known about the SEI’s morphology in silicon nanoparticles (SiNPs) aggregates that make the electrode, or about the evolution of these nanoparticles themselves with cycling. Attempts to characterize this system through electron microscopy have been severely limited by the radiolysis and sputtering damage, respectively, undergone by the SEI and lithium-silicon alloys (LixSi).

 

In this work we demonstrate the possibility to map major SEI and electrode components such as lithium carbonate (Li2CO3), lithium fluoride (LiF) and lithium oxide (Li2O) as well as quantifying lithium-silicon alloys compositions4 and Si crystallinity from a single dataset by combining scanning transmission electron microscopy and low-loss electron energy loss spectroscopy5 (STEM-EELS) (fig. 1). The low-loss part of the EEL spectrum is considerably more intense than its high energy counterpart and contains both the Li K-edge and plasmons. Fine tuning of the experimental parameters allows us to acquire low-loss spectrum images with good signal-noise ratios within timeframes compatible with minimal sample degradation. Plasmons can then either be used as unique molecular signatures for the SEI, or directly for quantification in the case of LixSi compounds (fig. 2 inset). This can yield unique insight into electrode degradation phenomena through careful data processing (MLLS, Drude model fit...). Large spectrum images can be acquired within short timeframes (~10 ms/voxel), making this method a powerful and practical diagnostics tool for battery electrodes and other beam-sensitive nanostructured systems.

 

Results on electrodes disassembled from full cells at their 1st, 10th and 100th charge and discharge, with a limited capacity of 1200 mAh/g, shed light on the SEI’s deposition mechanism and morphological as well as chemical evolution along cycling for different electrolytes. Strong correlations were observed between the SEI's local chemistry and our nanoparticles cycling performance (fig. 2). Lithiation was also observed to proceed preferentially along grain boundaries, resulting in different behaviours between mono- and polycrystalline silicon powders.

 

 

(1)          Delpuech et al. ChemSusChem 2016, 9, 1-9

(2)          Dupré, Boniface et al. Chem. Mater 2016 (accepted)

(3)          Danet et al. Phys. Chem. Chem. Phys. 201012 (1), 220–226.

(4)          Yakovlev et al. M. Micron 200839 (6), 734–740.

(5)          Egerton, R. F. Reports Prog. Phys. 200972 (1), 016502. 


Maxime BONIFACE (Grenoble), Lucille QUAZUGUEL, Philippe MOREAU, Florent BOUCHER, Dominique GUYOMARD, Pascale BAYLE-GUILLEMAUD
11:45 - 12:00 #4929 - MS05-OP260 Comparison of energy filtered TEM spectra image and automated crystal orientation mapping in LiFePO4/FePO4 phase mapping.
Comparison of energy filtered TEM spectra image and automated crystal orientation mapping in LiFePO4/FePO4 phase mapping.

Lithium iron phosphate (LiFePO4, LFP) is one of the most promising cathode materials for the next generation of Li ion batteries and attracts great attentions. Experimental mapping the lithiated (LFP) and delithiated phase (FePO4, FP) at nanoscale resolution provides knowledge on the microscopic mechanism of the reaction processes during electrical cycling, which is crucial to improve the limits of this material. Versatile scanning / transmission electron microscopy (S/TEM) techniques, due to the advantage of intrinsic imaging ability by the electron optics, have attracted extreme interest in high resolution phase mapping. The methods are generally sorted into two kinds: one is based on electron energy loss spectroscopy (EELS), such as energy filtered TEM (EFTEM) [1], relying on the chemical information in the energy spectra; the other is automated crystal orientation mapping (ACOM) [2], originally designed for orientation analysis of nanocrystalline materials [3], relying on the crystallographic information recorded in diffraction patterns. However, so far, there is no strongly convincing evidence indicating the consistency between the chemical and the crystallographic information in the phase map, because of lacking comparison of the results between the two kind methods.

 

In this work, we applied both EFTEM and ACOM methods to the same part of a sample (half lithiated) for comparison. Maps obtained by ACOM and EFTEM of Fe-L3,2 (figure 1 a, b) show excellent agreements with each other. It proves the reliability of both methods, i.e. the consistence of the chemical and crystallographic information for the LFP/FP system. Furthermore, we demonstrate that the properties of the LFP/FP interfaces can be further characterized from the crystallographic data obtained by ACOM: on average 1.4 ° misorientation was observed at all interfaces (figure 1 d, e), and these interfaces have a preferred orientation with the normal close to the a-axis (100), but slightly deviated towards the c-axis (001) (figure 1 f, g) in agreement with [4]. Further attention is drawn to the low energy loss regime for EFTEM analysis. Figure 2 a, c and e respectively shows a map measured from the Li-K & Fe-M edges (figure 2 b), and mapping of  the dielectric function (figure 2 d) and the volume plasmon center (figure 2 f). Finally, a comprehensive comparison of all methods is given in terms of information contents, dose level, acquisition time and signal quality. The latter three are crucial for the design of in-situ experiments [5]. 

 

References:

[1] JD Sugar et al, J Power Sources 246 (2014), p512.

[2] G Brunetti et al, Chem Mater 23 (2011), p4515.

[3]  EF Rauch et al, Zeitschrift für Krist 225 (2010), p103.

[4]  M Welland et al, ACS Nano (2015), p9757.

[5]  The authors acknowledge funding from Hi-C project. Dr. Di Wang is thanked for discussions.


Xiaoke MU (Eggenstein-Leopoldshafen, Germany), Aaron KOBLER, Di WANG, Venkata Sai Kiran CHAKRAVADHANULA, Sabine SCHLABACH, Dorothee-Vinga SZABO, Paul NORBY, Christian KÜBEL
12:00 - 12:15 #6030 - MS05-OP268 Growth and degradation of advanced octahedral Pt-alloy nanoparticle catalysts for fuel cells.
Growth and degradation of advanced octahedral Pt-alloy nanoparticle catalysts for fuel cells.

Octahedral Pt-Ni nanoparticles are highly attractive as fuel-cell catalysts due to their extraordinarily high activity for the oxygen-reduction-reaction (ORR). A deep understanding of their atomic-scale structure, degradation and formation is a prerequisite for their use as rationally designed nanoparticle catalysts with high activity and long-term stability.

Here we present an extensive microstructural study of the growth and degradation behavior of various octahedral Pt-alloy nanoparticles using in situ transmission electron microscopy (TEM) and Cs-corrected high-angle annular dark-field scanning transmission electron microscopy (HAADF-STEM) combined with electron energy-loss spectroscopy (EELS) and energy-dispersive X-ray spectroscopy (EDX). We show that octahedral nanoparticles often show compositional anisotropy with Ni-rich {111} facets leading to complex structural degradation during ORR electrocatalysis. The Ni-rich {111} facets are preferentially etched, resulting in the formation of first concave octahedra and then Pt-rich skeletons that have less active facets (Figure 1)[1]. Furthermore, we reveal element-specific anisotropic growth as the reason for the compositional anisotropy and the limited stability. During the solvothermal synthesis, a Pt-rich nucleus evolves into precursor nanohexapods, followed by the slower step-induced deposition of Ni on the concave hexapod surface, to form octahedral facets (Figure 2)[2]. While the growth of Pt-rich hexapod is a ligand-controlled kinetic process, the step-induced deposition of the Ni-rich phase at the concave surface resembles a thermodynamically controlled process accomplished in much longer time. In order to tune the atomic-scale microstructure of the octahedra for long-term stability, we illustrate the effect of varying the growth conditions on morphology and compositional segregation by producing trimetallic PtNiCo nanooctahedra and comparing “one-step” and newly-developed "two-step" synthesis routes [3]. Furthermore we demonstrate how Pt atom surface diffusion may produce a protective Pt surface layer on top of the Ni-rich facets, resulting in advanced and more stable octahedral catalysts. Figure 3 shows a sequence of structural changes taking place on an octahedral nanoparticle during in situ heating up to 800°C using a MEMS chip heating holder (DENSsolutions, Delft, NL). It can be observed that Pt-rich corner atoms diffuse and subsequently fill the concave Ni-rich {111} facets, forming perfectly octahedral nanoparticles with flat Pt-rich {111} surfaces (Figure 3) [4].

 

[1]    Cui CH, Gan L, Heggen M, Rudi S, Strasser P, Nature Materials 2013; 12: 765.

[2]    Gan L, Cui CH, Heggen M, Dionigi F, Rudi S, Strasser P, Science 2014; 346: 1502.

[3]    Arán-Ais RM, Dionigi F, Merzdorf T, Gocyla M, Heggen M, Dunin-Borkowski RE, Gliech M, Solla-Gullón J, Herrero E, Feliu JM, Strasser P, Nano Letters 2015; 15: 7473-7480.

[4]    Gan L, Heggen M, Cui CH, Strasser P, ACS Catalysis 2016; 6: 692.


Marc HEGGEN (Jülich, Germany), Martin GOCYLA, Lin GAN, Peter STRASSER, Rafal DUNIN-BORKOWSKI
12:15 - 12:30 #6591 - MS05-OP272 Degradation of (La,Sr)(Co,Fe)O3-δ SOFC Cathodes at the Nanometre Scale and Below.
Degradation of (La,Sr)(Co,Fe)O3-δ SOFC Cathodes at the Nanometre Scale and Below.

     For developing solid oxide fuel cells (SOFCs) operating at intermediate temperatures, metallic materials have become a preferential choice for the interconnect due to their low cost and excellent physical and chemical properties. However the presence of chromium in all commonly used metallic alloys has been found to cause poisoning of the cathode leading to rapid electrochemical performance degradation of the cathodes including one of the most promising (La,Sr)(Co,Fe)O3-δ (LSCF) perovskite oxides [1-3]. Despite the extensive research on the chromium deposition and poisoning processes, careful microstructural studies, especially at the nanoscale, are rare, which can provide valuable information for the fundamental understanding of the Cr poisoning mechanisms required for developing Cr tolerant cathode materials.  

     In this paper, we examine the Cr poisoning mechanisms in LSCF materials by correlating the bulk electrochemical properties of the cell with their structural and chemical change at multi-scales down to the nanometer level. Cells with LSCF cathodes were prepared, and the effect of Cr poisoning on the electrochemical behavior of the cell was assessed by impedance spectroscopy. The change in nano/microstructure and chemistry due to poisoning were studied in parallel by a combination of several advanced electron microscopy techniques including focus ion beam (FIB) tomography, high resolution (scanning) transmission electron microscopy ((s)TEM) and analytical STEM. Our results show that Cr poisoned samples exhibit multiscale changes especially at the nanoscle including formation of nanometer size Cr rich phases (Figure 1), Cr segregation at LSCF grain boundaries (Figure 2), alternation of local LSCF stoichiometry and structure (Figure 3), and change of valence state of the B site elements. These observed nanoscale changes are consistent with the impedance data measured from the same samples that shows the reduction of both oxygen surface reaction rate and oxygen diffusion  by 1-2 orders of magnitude after Cr poisoning. The work revealed critical degradation mechanisms effective at the nano to atomic scale and provide new insight for the development of future poisoning resistant electrode materials not only for SOFCs but also for other devices such as solid oxide electrolysis cells.

References

[1]       M.C. Tucker, H. Kurokawa, C.P. Jacobson, L.C. De Jonghe, S.J. Visco, J. Power Sources 160 (2006) (1) 130.

[2]       S.P. Jiang, X.B. Chen, Int. J. Hydrog. Energy 39 (2014) (1) 505.

[3]       S.N. Lee, A. Atkinson, J.A. Kilner, J. Electrochem. Soc. 160 (2013) (6) F629.


Ni NA (london, United Kingdom), Cooper SAMUEL, Skinner STEPHEN
Salle Gratte Ciel 1&2

"Thursday 01 September"

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IM10-II
10:15 - 12:30

IM10: Correlative microscopy
SLOT II

Chairpersons: Yannick SCHWAB (Chairperson, Heidelberg, Germany), Paul VERKADE (Chairperson, Bristol, United Kingdom)
10:15 - 10:45 #8318 - IM10-S60 Next Gen CLEM: super-accurate correlation and intelligent image acquisition.
Next Gen CLEM: super-accurate correlation and intelligent image acquisition.

Correlative light and electron microscopy (CLEM) combines the benefits of fluorescence and electron imaging, revealing protein localisation against the backdrop of cellular architecture. CLEM is usually performed by growing cells on gridded coverslips, imaging the cells (live or fixed) using confocal microscopy, preparing the cells for electron microscopy, relocating the cell position and plane for electron imaging of the fluorescent structure, selecting and modeling the 3D data in both modalities, and overlaying the two datasets to identify the structure of interest. This process usually requires collaboration with expert electron microscopists, and has sufficient steps and complexity to deter many researchers. Nevertheless, for those who commit to the process, there are rich rewards in the understanding of biological processes. Our recent work has focused on improving the speed, accuracy and accessibility of CLEM.

 

During this development work, it became clear that the technical challenges associated with CLEM are exaggerated when working in 3D. To increase protein localisation precision, we developed an ‘In-Resin Fluorescence’ (IRF) protocol that preserves the activity of GFP and related fluorophores in resin-embedded cells and tissues. The sample preparation is relatively fast, and also introduces electron contrast so that cell structure can be visualised in the electron microscope. Once the resin blocks have been cut into ultrathin sections, out-of-plane fluorescence is removed resulting in physical ‘super-resolution’ light microscopy in the axial direction, which increases the accuracy of the LM-EM overlays. Localisation precision is further increased by imaging the IRF sections in vacuo in the next generation of commercial integrated light and electron microscopes (ILEM). We were able to further improve accuracy by developing integrated super-resolution light and electron microscopy, using the novel and remarkable blinking property of GFP and YFP in-resin in vacuo, and implementing automated 3D imaging for 3D functional and structural analysis of whole cells and tissues at the nanoscale.

 

With the advent of dual fluorescence-electron samples comes the challenge of locating and following  fluorescent cells during sample preparation and automated 3D EM image acquisition. We present a new locator tool – the miniature light microscope (miniLM), designed to integrate with the ultramicrotome to locate cells during trimming and sectioning, and an even smaller version that fits into the extremely tight space of the 3D SEM vacuum chamber for on-the-fly tracking of fluorescent cells during long automated imaging runs.


Lucy COLLINSON (Londres, United Kingdom)
Invited
10:45 - 11:00 #6928 - IM10-OP175 Super-resolution fluorescence microscopy of cryo-immobilized samples.
Super-resolution fluorescence microscopy of cryo-immobilized samples.

Correlative light and electron microscopy (CLEM) benefits greatly from the development of super-resolution fluorescence microscopy. With a resolution down to the 10 nm range it enables to bridge the large resolution gap between the two different microscopy techniques. However, equally important as the achievable resolution of the imaging system is the preservation of the biological structures during the sample preparation process. Imaging undisturbed structures in living cells remains very challenging for super-resolution fluorescence microscopy with its relatively long acquisition times. Typically, chemical fixation is used to immobilize the sample for achieving best technical results, but unfortunately this is associated with structural changes in the sample, especially at a level below the diffraction limit of light [1,2].

Cryo-immobilization offers a preferable alternative. Here, fast freezing techniques enable vitrification of the sample and preserve the structures in a near-native state. Although cryo-immobilization has been established as a routine technique in the fields of electron and X-ray microscopy, it was long unclear whether super-resolution fluorescence microscopy could be performed under cryo-conditions to image vitrified samples [3].

Recently, we demonstrated on the single molecule level that photo-switching of fluorescent proteins is possible under cryo-conditions and suitable for the super-resolution method of single molecule localization microscopy (SMLM) [4]. Chang et al. and Liu et al. have shown the correlation of cryo-SMLM with electron cryo-microscopy [5,6]. Here, we present cryo-SMLM of vitrified biological samples and its prospects for cryo-CLEM. We demonstrate that a resolution improvement of up to 5x compared to conventional fluorescence cryo-microscopy is possible.

Super-resolution fluorescence cryo-microscopy offers the possibility to image fluorescently labelled biological samples with diffraction-unlimited resolution, immobilized, but with structural preservation in a near-native state. This is not only helping to bridge the large resolution gap in cryo-CLEM, but might also offer an alternative to the dilemma in conventional super-resolution imaging, where one has to choose between the limited temporal resolution in case of living cells or the disadvantages of chemical fixation.

[1] Bleck et al., 2010, J. Microsc.

[2] Weinhausen et al., 2014, Phys. Rev. Lett.

[3] Kaufmann et al., 2014, Curr. Opin. Chem. Biol.

[4] Kaufmann et al., 2014, Nano Lett.

[5] Chang et al., 2014, Nature Meth.

[6] Liu et al., 2015, Sci. Rep.


Rainer KAUFMANN (Oxford, United Kingdom), Christoph HAGEN, Kay GRÜNEWALD
11:00 - 11:15 #6135 - IM10-OP168 Electron-beam induced fluorescence superresolution with 100nm resolution in CLEM on labelled tissue sections.
Electron-beam induced fluorescence superresolution with 100nm resolution in CLEM on labelled tissue sections.

We present a novel optical superresolution (SR) technique using integrated correlative light and electron microscopy. Recent advances in SR techniques has revolutionized the field of optical microscopy by achieving image resolutions well below the diffraction limit, the fundamental resolution limit of traditional optical microscopy. Current SR methods involve stochastic techniques, beam-shaping in combination with confocal scanning, external control over excited state relaxation pathways, and/or structured illumination [1]. Correlation of SR data with ultrastructural images obtained with electron microscopy (EM) has been demonstrated [2], but requirements for SR microscopy are often in conflict with those for EM. Moreover, the optical localization accuracy in the correlation image may be severely compromised compared to the SR resolution by the additional error introduced in aligning the separate SR and EM images. Here, we demonstrate a novel approach for correlative SR-EM using a focused electron beam to locally modify the fluorescence signal of fluorophores, and detecting the change in fluorescence intensity with a wide-field epi-fluorescence microscope.

 

We use an integrated light-electron microscope [3] that is used for correlative light and electron microscopy (CLEM) [2]. The integrated light microscope allows us to record the fluorescence signal while scanning the electron beam through the optical field of view. By correlating changes in the fluorescence decay with the instantaneous electron beam position and the other EM signals, we obtain a SR fluorescence image (Fig.1). This SR fluorescence image is in perfect registry with the simultaneously acquired EM image.

 

In first experiments on rat pancreas tissue, immuno-labelled for insulin and guanine quadruplexes using different Alexa Fluor dyes, we have achieved a lateral resolution below 100nm (Fig. 2). We will discuss further implementation of our technique towards higher resolution, paving the way towards precise localization, within the EM ultrastructure, of bio-molecules labelled with standard fluorescent dyes.

 

[1] B. Huang, M. Bates, and X. Zhuang, Annual Review of Biochemistry, 78:993-1016, 2009.

[2] P. de Boer, J.P. Hoogenboom, and B.N.G. Giepmans. Nature Methods 12(6):503–513, 2015.

[3] A.C. Zonnevylle et al., Journal of Microscopy 252, 58-70 (2013).


Lennard M. VOORTMAN (Delft, The Netherlands), Aditi SRINIVASA RAJA, Aaro VÄKEVÄINEN, Pascal DE BOER, Ben N.g. GIEPMANS, Pieter KRUIT, Jacob P. HOOGENBOOM
11:15 - 11:30 #6688 - IM10-OP173 Multi-color correlative PALM/STORM and electron tomography reveals micro-domain organization of endosomes.
Multi-color correlative PALM/STORM and electron tomography reveals micro-domain organization of endosomes.

Correlative Light and Electron Microscopy (CLEM) is a method of choice to demonstrate the localization of a protein in a given organelle while revealing the ultrastructure of the organelle. However, a long-lasting problem in CLEM is the mismatch of resolution between modalities. As it becomes more and more clear that most organelles show a sub-compartmentalization of their membranes into distinct micro-domains, the visualization of such micro-domains at the molecular level using CLEM is a potential strategy to elucidate the molecular basis underlying the ultrastructure of organelles.

We developed a workflow that combines multi-color Single Molecule Localization Microscopy (SMLM) and electron tomography on the very same sample. We applied this approach to study the compartmentalization of early endosomes in micro-domains. As proof of principle, we visualized Transferrin and EGF as models of cargo molecules that follow the recycling and degradative route, respectively. Using single molecule CLEM tomography, we could visualize Transferrin and EGF molecules in distinct morphological compartments within the same endosome (see figure). We could also demonstrate the localization of Rab5 in micro-domains on the globular membrane of the endosome and its exclusion from the tubular parts. Beyond endocytosis, this method can be applied to any biological question requiring both multi-molecule nanoscale localization and 3D ultra-structural information of the very same sub-cellular structure.


Nicolas BROUILLY (IBD, Marseille), Yannis KALAIDZIDIS, Jean-Marc VERBAVATZ, Marino ZERIAL
11:30 - 11:45 #5289 - IM10-OP166 Combining SEM with AFM for in situ Correlative Microscopy.
Combining SEM with AFM for in situ Correlative Microscopy.

With the large amount of current research and development focused on nano wires, carbon nano tubes, and other nano scale materials, imaging these materials has become a large part of the challenges involved.

The two most prominent methods for imaging at the nano scale are Scanning Electron Microscopy (SEM) and Atomic Force Microscopy (AFM). These complimentary methods utilize fundamentally different principles for generating imagery - SEM exploits the interaction of electrons with matter, while AFM is based on physical interaction of a sharp tip with the sample surface.

Both approaches have strengths and weaknesses. The SEM's strength is to quickly generate images with a large range of magnifications, making it easy to locate the area of interest. Additionally, the SEM beam can be used to characterize materials beyond mere imaging (e.g. EDX elemental mapping, etc.). Beyond that, the use of Focussed Ion Beams (FIB) enhances the ability for modification or preparation of samples.

However, scanning beams do not yield 3D information, e.g. "invisible" contamination layers or the precise surface structure of novel materials such as solar cells.

The AFM's main advantage lies in its ability to obtain 3D information, the downsides are that it is hard to find the target area and image generation is slow.

Combining these two tools into one setup - putting an AFM inside an SEM - gives quick access to a more complete data set. Additionally, FIB-milled or FIB-deposited structures can be characterized using this combination of tools in a FIB/SEM system.

The utility of this combination of tools is demonstrated with several examples where locating the area of interest purely by AFM or light microscopy would have been highly impractical.


Stephan KLEINDIEK (Reutlingen, Germany), Massoud DADRAS, Klaus SCHOCK, Andreas LIEB, Gregor RENKA
11:45 - 12:00 #6983 - IM10-OP176 Probing the multiscale structure, composition and nanomechanical properties of lipids and biopolymers in natural systems: a few examples.
Probing the multiscale structure, composition and nanomechanical properties of lipids and biopolymers in natural systems: a few examples.

The natural systems as plants or animal tissues possess a highly complex organisation of numerous components: micronutriments, proteins, polyssacharides, lipids, water, ….  Their natural arrangement gives very fine structures that range from the nanometer up to few meters scale range (typically from the protein to the whole plant). Native architectures have a direct influence on the functional, chemical, organoleptic and nutritional macroscopic properties relevant for designing sustainable performant products for environmentally compatible food and non–food uses.

The development and application of experimental methodologies to probe the assemblies of lipids, biopolymers, mineral nutrients as well as structural water from the sub-cellular to the molecular levels is then a permanent challenge. The parallel use of a set of complementary microscopy tools that provides relevant information may be needed to overcome the complexity of hydrated natural systems and to get both their structural, composition and nanomechanical properties. Most of the time, the experimental sample preparation is also a critical prerequisite to adapt the biological samples to the features of the analytical tool while keeping as most as possible the structures in their native shape. Thanks to this step, the microscopy tools can be operated through a direct or indirect correlation approach.

Using few applications we developed on biopolymer-based nanoparticles as well as animal cells or plant tissues (see Figure 1), we will show how to probe the structure/composition/nanomechanical properties focusing on the strong complementarity of AFM imaging and force mapping, Raman mapping, SEM/EDX, and scanning transmission X-ray spectrometry (STXM). We will also discuss about the samples preparation strategies, and about data processing in relation to the information expected.

 

 

References

M. Gayral, C. Gaillard, B. Bakan, M. Dalgalarrondo, K. Elmorjani, C. Delluc, S. Brunet, L. Linossier, M.H. Morel, D. Marion, Transition from vitreous to floury endosperm in maize (Zea mays L.) kernels is related to protein and starch gradients, Journal of Cereal Science, 2016, accepté

G. Philippe, C. Gaillard, J. Petit, N. Geneix, M. Dalgalarrondo, R. Franke, C. Rothan, L. Schreiber, D. Marion, B. Bakan, Ester-crosslink Profiling of the Cutin Polymer of Wild Type and Cutin Synthase Tomato (Solanum lycopersicum L.) Mutants Highlights Different Mechanisms of Polymerization, Plant Physiology

C. Karunakaran, C.R. Christensen, C. Gaillard, R. Lahlali, L.M. Blair, V. Perumal, S.S Miller, A.P. HitchcockIntroduction of soft X-ray spectromicroscopy as an advanced technique for plant biopolymers research. PLoS One, 2015 26;10 (3) pages: e0122959.

Covis R., Vives T., Gaillard C., Maud Benoit, Benvegnu T., Interactions and hybrid complex formation of anionic algal polysaccharides with a green cationic glycine betaine derived surfactant, Accepted in Carbohydrate Polymers, 2015, May 5;121:436-48.


Cédric GAILLARD (NANTES)
12:00 - 12:15 #6429 - IM10-OP169 New insights into the Precambrian fossil record using correlative electron and ion beam microscopy.
New insights into the Precambrian fossil record using correlative electron and ion beam microscopy.

Earth’s rock record holds great potential for decoding the origin and early diversification of life on our planet. However, the interpretation of the Precambrian (older than ~541 million years ago) fossil record is fraught with difficulties. These include: the fragmentary nature of the sedimentary rock record with large periods of time unrepresented and certain habitats under-represented; and the nature of the organisms, being microscopic, morphologically simple and often only subtly different from co-occurring non-biological organic material.

Distinguishing between true signs of life and abiotic artefacts requires analytical techniques with excellent spatial resolution in two and three dimensions, in order to accurately analyse key features of putative cells such as cell wall ultrastructure, biochemistry, and interaction of cell walls with the minerals that have fossilised them [1]. Likewise, distinguishing different grades of life (for example, simple prokaryotes versus more complex eukaryotes) requires similar techniques, in order to identify putative multi-cellularity and specific types of cell contents and cell wall architecture. 

We here demonstrate how a protocol combining focused ion beam (FIB) milling, SEM, TEM and nano-scale secondary ion mass spectrometry (SIMS) can reveal unprecedented  nanometer to micrometer scale details of Precambrian fossilised organisms, providing more robust biosignatures for both prokaryotes and eukaryotes for future studies on Earth or other planets. 

FIB milling was used to prepare ultrathin (c. 100 nm) wafers from standard geological thin sections for TEM analysis, plus slightly thicker wafers (c. 150-200 nm) that could be used for both TEM and NanoSIMS analysis. The latter meant that both TEM and NanoSIMS data could be collected from a single candidate microfossil: TEM data included ChemiSTEM elemental mapping of major elements, STEM-EELS analysis of the bonding and structure of organic material, and electron diffraction to identify mineral phases; NanoSIMS data included targeted analysis of trace elements in organic material (e.g., N, S, P) and in the fossilising mineral phases. Analysis of FIB-milled wafers counteracts the problems previously associated with surface analysis techniques such as NanoSIMS (i.e. surface contamination and polishing effects). FIB-milling was also combined with SEM imaging (3D slice and view) in order to obtain accurate 3D visualisations of candidate microfossils.

Data will be presented from three geological formations that play an important role in our understanding of the origin and evolution of early life on Earth: 1, The 1878 Ma Gunflint Formation of Canada, containing an iconic suite of diverse microfossils used as a benchmark for high quality preservation of early life in marine environments [2]; 2, The 1000 Ma Torridon Group of northwest Scotland (Fig. 1) that is renowned for exceptional three-dimensional preservation of both prokaryotes and eukaryotes in phosphate and clay minerals in a terrestrial (lake) setting [3]; 3, The 850 Ma Bitter Springs Formation of central Australia that shows exquisite microfossil preservation (including putative cell contents) in micro-quartz [4].

References cited

[1] D. Wacey et al. (2011) Nature Geosci. 4, 698-702.

[2] D. Wacey et al. (2013) PNAS 110, 8020-8024.

[3] P. Strother et al. (2011) Nature 473, 505-509.

[4] J.W. Schopf (1968) J. Palaeontology 42, 651-688.

Acknowledgements

DW acknowledges funding from the Australian Research Council and European Commission. KE is supported by an Australian Postgraduate Award and a UWA Top-up Scholarship. We acknowledge the facilities, scientific and technical assistance of the AMMRF at UWA, a facility funded by the University, State and Commonwealth Governments. Paul Strother is thanked for provision of the Torridon specimens.


David WACEY, Kate EILOART, Martin SAUNDERS (Perth, Australia), Paul GUAGLIARDO, Matt KILBURN
12:15 - 12:30 #6520 - IM10-OP170 Platinum shadowing for correlative light and electron microscopy.
Platinum shadowing for correlative light and electron microscopy.

Fluorescence microscopy reveals molecular expression at nanometer resolution but lacks ultrastructural context information. Electron microscopy provides this contextual subcellular details but protein identification requires elaborate protocols. Correlative light and electron microscopy produces complimentary information that expands our knowledge of protein expression in cells and tissue. Even though a number of correlative approaches are currently available, few of these allow subcellular localization in tissue because of the challenges with sample preparation and 3D complexity. Tokuyasu cryo-sections (Tokuyasu, 1980) preserve the sample ultrastructure and antigenicity of most epitopes, however, heavy metal exposure generates weak contrast to the samples rendering often interpretation of the data difficult.

We present a quick, simple and reproducible method for protein localization by conventional and super-resolution light microscopy combined with platinum shadowing and scanning electron microscopy to obtain topographic contrast from the surface of ultrathin cryo-sections collected on silicon wafers. Figure 1 shows protein distribution at nuclear pores in the topographical landscape of mouse kidney tissue.

Reference: Tokuyasu, K.T. Immunochemistry on ultrathin frozen sections. Histocem. J. 12, 381-403 (1980).


Jose Maria MATEOS (Zurich, Switzerland), Bruno GUHL, Jana DOEHNER, Gery BARMETTLER, Andres KAECH, Urs ZIEGLER
Salon Tête d'Or

"Thursday 01 September"

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LS5-I
10:15 - 12:30

LS5: Extra-cellular matrix
SLOT I

Chairpersons: Herman HÖFTE (Chairperson, VERSAILLES, France), Clemens M. FRANZ (Chairperson, Karlsruhe, Germany)
10:15 - 10:45 #8402 - LS05-S16 Structure and nanomechanical properties of a wonderfully complex material, the primary cell wall of plants: recent progress based on AFM and FESEM.
Structure and nanomechanical properties of a wonderfully complex material, the primary cell wall of plants: recent progress based on AFM and FESEM.

Growing plant cells synthesize a strong yet extensible cell wall (=extracellular matrix) composed of long, thin cellulose microfibrils that are laterally bonded to one another in organized layers ~ 40 nm thick and that are embedded in a hydrated matrix consisting of complex polysaccharides (pectins, hemicelluloses). I will briefly review the biosynthetic origins of these wall components and what is known about their assembly to form a hierarchically-structured hydrated material with diverse physical and chemical properties. Recent advances in atomic force microscopy (AFM), field effect scanning electron microscopy (FESEM), and solid-state NMR have led to a rethinking of how these wall components interact with one another and how cells regulate the irreversible expansion (growth) of the cell wall 1-4. With AFM we have characterized the detailed organization of recently-deposited cellulose microfibrils in never dried cell walls of onion epidermis. The interaction of microfibrils with matrix can be visualized in two-color maps based height (which emphasizes microfibrils and modulus or adhesion, which highlight soft matrix. Additionally, when the cell walls are stretched to reveal microfibril re-arrangements after plastic or elastic deformation or after enzyme-mediated cell wall creep, we find different patterns of microfibril movements. FESEM images of the same material (except dried) detect only a surface layer of pectins that obscure the underlying microfibrils. These can be unveiled by enzyme digestions to selectively remove pectins. Some of the remaining unsolved problems in cell wall structure and polysaccharide interactions will be highlighted.

 References:

1 Zhang T, Zheng Y, Cosgrove DJ. (2016) Spatial organization of cellulose microfibrils and matrix polysaccharides in primary plant cell walls as imaged by multichannel atomic force microscopy. Plant J  85: 179-92.

2  Wang T, Park YB, Cosgrove DJ, Hong M. (2015) Cellulose-pectin spatial contacts are inherent to never-dried arabidopsis primary cell walls: Evidence from solid-state nuclear magnetic resonance. Plant Physiol  168: 871-84.

3 Cosgrove DJ. (2015) Plant cell wall extensibility: Connecting plant cell growth with cell wall structure, mechanics, and the action of wall-modifying enzymes. J Exp Bot  67: 463-476.

4 Cosgrove DJ. (2014) Re-constructing our models of cellulose and primary cell wall assembly. Curr Opin Plant Biol  22C: 122-31.

 Acknowledgements: This work was supported by the Center for Lignocellulose Structure and Formation, an Energy Frontier Research Center funded by the U.S. Department of Energy, Office of Science, Basic Energy Sciences (grant no. DE-SC0001090).


Daniel COSGROVE (, USA), Tian ZHANG, Yunzhen ZHENG
Invited
10:45 - 11:15 #8783 - LS05-017 Mechanical Properties of the Extracellular Matrix Affect Growth Plate Morphogenesis.
Mechanical Properties of the Extracellular Matrix Affect Growth Plate Morphogenesis.

The growth plate (GP) is a dynamic tissue driving bone elongation through chondrocyte proliferation, hypertrophy and matrix production. The extracellular matrix (ECM) is the major determinant of GP biomechanical properties and assumed to play a crucial role for chondrocyte geometry and arrangement, thereby guiding proper growth plate morphogenesis and bone elongation. To elucidate the relationship between morphology and biomechanics during cartilage morphogenesis, we have investigated structural and elastic properties of the proliferative zone of the murine GP by atomic force microscopy (AFM) from the embryonic stage to adulthood. We observed a progressive cell flattening and arrangement into columns from embryonic day 13.5 until postnatal week 2, correlating with an increasing collagen density and ECM stiffness, followed by a nearly constant cell shape, collagen density and ECM stiffness from week 2 to 4 months. At all ages, we found marked differences in the density and organization of the collagen network between the intracolumnar matrix, and the intercolumnar matrix, associated with a roughly two-fold higher stiffness of the intracolumnar matrix compared to the intercolumnar matrix. This difference in local ECM stiffness seems therefore to force the cells to arrange in a columnar structure upon cell division and drive bone elongation during embryonic and juvenile development.

References:

C. Prein, N. Warmbold, Z. Farkas, M. Schieker, A. Aszodi, and H Clausen-Schaumann: Structural and Mechanical Properties of the Proliferative Zone of the Developing Murine Growth Plate Cartilage Assessed by Atomic Force Microscopy, Matrix Biology, (2016), 50, 1-15.

M. Kamper, N. Hamann, C. Prein, H Clausen-Schaumann, Z. Farkas, A. Aszodi, A. Niehoff, M. Paulsson, and F. Zaucke: Early changes in morphology, bone mineral density and matrix composition of vertebrae lead to disc degeneration in aged collagen IX -/- mice, Matrix Biology, (2016), 49, 132-143.

E. Aro, A. M. Salo, R. Khatri, M. Finnilä, I. Miinalainen, R. Sormunen, O. Pakkanen, T. Holster, R. Soininen, C. Prein, H. Clausen-Schaumann, A. Asźodi, J. Tuukkanen, K. I. Kivirikko, E. Schipani, and J. Myllyharju: Severe Extracellular Matrix Abnormalities and Chondrodysplasia in Mice Lacking Collagen Prolyl 4-Hydroxylase Isoenzyme II in Combination with a Reduced Amount of Isoenzyme I,  J. Biol. Chem., (2015), 290 (27), 16964–16978.


Carina PREIN, Niklas WARMBOLD, Zsuzsanna FARKAS, Matthias SCHIEKER, Attila ASZODI, Hauke CLAUSEN-SCHAUMANN (, Germany)
11:15 - 11:45 #8298 - LS05-S18 Second harmonic imaging of collagen organization in connective tissues.
Second harmonic imaging of collagen organization in connective tissues.

Type I collagen is a major structural protein in mammals. This biopolymer is synthesized as a triple helix, which self-assembles into fibrils (diameter: 10-300 nm) and further forms various 3D organizations specific to each tissue. In recent years Second Harmonic Generation (SHG) microscopy has emerged as a powerful technique for the in situ investigation of the fibrillar collagen structures in matrices or tissues [1]. However, as an optical technique with typically 300 nm lateral resolution, SHG microscopy cannot resolve most of the collagen fibrils. Moreover, in contrast to incoherent fluorescence signals that scale linearly with the chromophore concentration, SHG is a coherent multiphoton signal that scales quadratically with the density of collagen triple helices aligned with the same polarity in the focal volume. Consequently, quantitative SHG measurements have been limited so far to averaged phenomenological parameters [1].

In this study, we correlated SHG and transmission electron microscopies to determine the sensitivity of SHG microscopy and calibrate SHG signals as a function of the diameter of the collagen fibril [2]. To that end, we synthesized in vitro isolated fibrils with various diameters and successfully imaged the very same fibrils with both techniques, down to 30 nm diameter (see figure 1). We observed that SHG signals scale as the fourth power of the fibril diameter, as expected from analytical and numerical calculations. It validated our quantitative bottom-up approach used to calculate the non-linear response at the fibrillar scale and demonstrated that the high sensitivity of SHG microscopy originates from the parallel alignment of triple helices within the fibrils and the subsequent constructive interference of SHG radiations. This calibration was then applied to intact rat corneas, where we successfully recovered the diameter of hyperglycemia-induced fibrils in the Descemet’s membrane without having to resolve them [2,3].          

Importantly, this calibration only applies to isolated fibrils. Nevertheless, complementary techniques can probe the sub-micrometer structure of dense distributions of collagen fibrils. In particular, we have shown that polarization-resolved SHG microscopy can probe the main orientation of collagen fibrils and their orientation disorder within the focal volume [4]. Combination of this modality with traction assays then provides a new method to measure the reorganization of the collagen network upon stretching and to correlate this microscopic response to the biomechanical response at macroscopic scale [4, 5].

In conclusion, our data represent a major step towards quantitative SHG imaging of collagen organization in biomaterials or connective tissues.

 

[1] M. Strupler, A.-M. Pena, M. Hernest, P.-L. Tharaux, J.-L. Martin, E. Beaurepaire, and M.-C. Schanne-Klein, Opt. Express 15, 4054-4065 (2007).

[2] S. Bancelin, C. Aimé, I. Gusachenko, L. Kowalczuk, G. Latour, T. Coradin, and M.-C. Schanne-Klein, Nat. Commun. 5 (2014).

[3] G. Latour, L. Kowalczuk, M. Savoldelli, J.-L. Bourges, K. Plamann, F. Behar-Cohen, and M.-C. Schanne-Klein, PLos ONE 7, e48388 (2012).

[4] I. Gusachenko, Y. Goulam Houssen, V. Tran, J.-M. Allain, and M.-C. Schanne-Klein, Biophys. J. 102, 2220 (2012).

[5] S. Bancelin, B. Lynch, C. Bonod-Bidaud, G. Ducourthial, S. Psilodimitrakopoulos, P. Dokladal, J.-M. Allain, M.-C. Schanne-Klein, and F. Ruggiero, Scientific Reports 5, 17635 (2015)


Marie-Claire SCHANNE-KLEIN (PALAISEAU CEDEX)
Invited
11:45 - 12:00 #6001 - LS05-OP023 Interplay of organic matrix and amorphous calcium phosphate strengthens the isopod claw.
Interplay of organic matrix and amorphous calcium phosphate strengthens the isopod claw.

Animal skeletons are high-performing composite materials that may help inspire materials and designs in a broad spectrum of industrial and biomedical applications. The study of various skeletal elements can provide important insights into evolutionary solutions to mechanical demands of animal locomotion, feeding and reproduction, as well as reveal the mechanisms controlling skeletal formation and biomineralization.

The extracellular matrix forming the crustacean exoskeleton comprises chitin-protein fibers embedded in a calcified inorganic matrix that consists of calcite and amorphous calcium carbonate. In crustaceans, the cuticle can be subdivided into a thin external layer - the epicuticle – and two internal layers, which are heavily calcified – the exocuticle and the endocuticle [1]. The crustacean cuticle generally consists of stacked sheets of parallel chitin-protein fibers, which helicoidally shift their orientation in each sequential sheet, resulting in a structure referred to as the Bouligand pattern [2]. This organization of the fibers strengthens the cuticle in different directions.

 

In our study, we analyzed the structure and composition of the walking leg claw of the woodlouse Porcellio scaber. Woodlice are terrestrial crustaceans that support their bodies with 7 pairs of legs, each ending in a claw. The claws are thin skeletal elements predominantly subjected to unidirectional loads. To study the nano-structure of the matrix, we imaged fractured claws with field-emission scanning electron microscopy using a Jeol 7500F microscope. We then analyzed the elemental composition and the distribution of mineral components in the claws with energy-dispersive X-ray spectroscopy (EDX) and electron energy-loss spectroscopy (EELS) combined with high-angle annular dark field scanning transmission electron microscopy (HAADF-STEM) at high spatial and high energy resolution using Zeiss SESAM and Jeol ARM200F microscopes at different accelerating voltages.

 

Our results demonstrate that the exocuticle of the claw is not calcified and is heavily brominated instead. The endocuticle, on the other hand, is mineralized predominantly with stable amorphous calcium phosphate, which is a highly unusual feature of an animal exoskeleton. Furthermore, we established that the claw endocuticle is highly structurally anisotropic, consisting of axially oriented chitin-protein fibers and amorphous calcium phosphate particles, all oriented in the direction of loading.

 

The presence of amorphous calcium phosphate in the mineralized endocuticle and a non-calcified, brominated external exocuticle may help increase fracture resistance of the claw cuticle. The brominated exocuticle, which is likely more elastic than the mineralized endocuticle, is distributed in areas subjected to maximum stress during axial loading of the claw. These structural and compositional features of the claw cuticle likely result in greater resistance of the claw to fracture and wear when exposed to axial loading.

 

Acknowledgments

The research leading to these results has received funding from the European Union Seventh Framework Program [FP/2007-2013] under grant agreement No.312483 (ESTEEM2). The work was supported by the Slovenian Research Agency in the scope of the research program P1-0184 (Integrative zoology and speleobiology).

 

References

[1] R Roer and R Dillaman, American Zoologist 24 (1984), pp 893-909.

[2] Y Bouligand, Tissue & Cell 4 (1972), pp. 189-217.


Miloš VITTORI (Ljubljana, Slovenia), Vesna SROT, Birgit BUSSMANN, Peter A. VAN AKEN, Jasna ŠTRUS
12:00 - 12:15 #6349 - LS05-OP024 Enamel evolution: Back in time by a molecular manipulation.
Enamel evolution: Back in time by a molecular manipulation.

Biomineralization is one of the key processes during vertebrate evolution that incorporates calcium and phosphate ions into soft matrices in the form of hydroxyapatite. Occurrence of mineralized tissues have offered the basis for various adaptive phenotypes such as endoskeleton for locomotion (bone), body armor for protection and teeth (enamel, dentin) for predation. Enamel is unique among the mineralized tissues, as it is formed on specific network of enamel matrix proteins (EMPs) secreted by epithelial ameloblasts. The two key structural proteins of enamel, amelogenin (AMEL) and ameloblastin (AMBN), self-assemble into higher-ordered structures from monomeric intrinsically disordered subunits as does the type I collagen (COL1), the predominant matrix protein in bone and dentine. While COL1 undergoes self-assembly via consecutive Gly-X-Y motif, the mechanism of self-assembly of EMPs and their subsequent role in formation of organized layer of hydroxyapatite crystals remains poorly understood.

We report here a novel evolutionary conserved self-assembly motif common to the key structural enamel matrix proteins AMBN and AMEL. The presence of this motif is essential for self-assembly of AMBN and AMEL into higher-ordered structures. These structures are essential for proper enamel formation. Transgenic mice that were unable to produce supramolecular structures of AMBN due to point substitutions within the identified self-assembly motif then produced severely affected enamel with simplified organization. Despite the normal cellular organization, EMPs secretion and Ca and P levels within the growing enamel of transgenic mouse, the affected enamel lacked organized prismatic structures and showed only radial organization without visible Hunter-Schreger bands. Moreover, enamel of mutant mice contained an enormous portion of interprismatic matrix with hypomineralized, yet well recognizable, crystallites, while no formation of oriented crystallites was observed within the compromised prisms.

This is the first in vivo evidence that the formation of supramolecular structures of enamel matrix proteins was essential for evolution of highly structured enamel in mammals.


Tomas WALD (Prague 10, Czech Republic), Frantisek SPOUTIL, Adriana OSICKOVA, Michaela PROCHAZKOVA, Oldrich BENADA, Petr KASPAREK, Ladislav BUMBA, Ophir KLEIN, Radislav SEDLACEK, Peter SEBO, Jan PROCHAZKA, Radim OSICKA
12:15 - 12:30 #6907 - LS05-OP025 The sample preparation for cryo-SEM: the real ultrastructure of microbial biofilm or just artifacts?
The sample preparation for cryo-SEM: the real ultrastructure of microbial biofilm or just artifacts?

The cryo-scanning electron microscopy (cryo-SEM) belongs to reputable techniques in electron microscopy of hydrated samples such as biofilms. The crucial steps of the cryo-preparation techniques are primarily the cryo-fixation and partial sublimation of ice contamination caused during the transfer of the sample to the cryo-high-vacuum preparation chamber where the sublimation process is performed; optionally the freeze-fracturing or coating by metal sputtering or carbon evaporation can be applied. In the case of cryo-fixation, an effort is to keep the frozen biofilm in the form nearby its native state. One of the simplest cryo-fixation techniques is a plunging of the biofilm on a substrate into a liquid cryogen. However, the plunging into a liquid nitrogen or even liquid ethane/propane is sufficient for fixation of very thin layers of biofilm (no more than a few micrometers in thickness) because it is very difficult to achieve enough cooling rates to produce amorphous ice in the sample due to the Leidenfrost effect [1]. Moreover, we show that the cryo-fixation into liquid nitrogen can lead to significant lateral macro-segregation of both bacteria and extracellular polymeric substances (EPS), where plunging into liquid ethane leads to micro-segregation of EPS and macro-segregation of bacteria (Figure 1, 2A). Substantially more effective cooling can be achieved by increasing the pressure during exposure to the liquid cryogen. This can be performed for example by the high-pressure freezing (HPF) technique [2]. It was proved that cryo-fixed biofilms by HPF show significantly improved preservation of bacterial ultrastructure and biofilm organization (Figure 2B).

In this study, the multi-layered biofilms formed by microorganisms were observed by cryo-SEM using freeze-fracturing technique. Cryo-fixation methods like plunging into liquid cryogen, freezing by cryo-jet system and high pressure freezing are compared. The freeze-fracture technique consists of fracturing a rapidly frozen biological sample; structural details exposed by the fracture plane may be then visualized by cryo-SEM.

The well-characterized ica operon-positive, biofilm and slime producing Staphylococcus epidermidis strain CCM 7221 (Czech Collection of Microorganisms, Brno, Czech Republic)  and Candida parapsilosis BC11 from Collection of Microbiology Institute, Masaryk University and St. Anna University Hospital (Brno, Czech Republic) was observed.  The strains Candida albicans GDH 2346 were also included [3]. Cultures were cultivated on the sapphire discs or cover glass in the cultivation BHI medium at 37°C for two days; fractured after cryo-fixation, then followed short sublimation of ice contamination at -90°C which, moreover, partially exposes interior of the biofilm. In our experiments we focused on the formation of the extracellular matrix produced during the cultivation.

The cryo-fixation can be recognized as a sufficient way how to fix and stabilize biofilms before their examination in cryo-SEM. The simple plunging into liquid cryogens is applicable only for very thin specimens depending on the composition and used substrate. In this case of grown biofilms which thickness is usually more than 10 µm then the inner structure of matrix and bacteria interconnections were observed applying the freeze-fracture technique was used, the HPF technique has proved to be necessary for preserving the biofilm ultrastructure.

References:

1.             Kuo, J., Electron microscopy: Methods and protocols. Vol. 369. 2007: Springer Science & Business Media.

2.             Krzyzanek, V., et al., Cryo-SEM of perpendicular cross freeze-fractures through a high-pressure-frozen biofilm. Microscopy and Microanalysis, 2014. 20(3): p. 1232-1233.

3.             Ruzicka, F., et al., Importance of biofilm in Candida parapsilosis and evaluation of its susceptibility to antifungal agents by colorimetric method. Folia Microbiol (Praha), 2007. 52(3): p. 209-14.

This work received support from the Grant Agency of the Czech Republic (GA14-20012S and GA16-12477S). KH acknowledges the support of FEI/CSMS scholarship.


Kamila HRUBANOVA (Brno, Czech Republic), Radim SKOUPY, Jana NEBESAROVA, Filip RUZICKA, Vladislav KRZYZANEK
Salle Gratte Ciel 3
14:00

"Thursday 01 September"

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AWARDS
14:00 - 15:30

EMS AWARDS

14:00 - 15:30 Exit Wavefunction Reconstruction:  Current Status, Future Prospects and Applications to Materials Systems. Angus KIRKLAND (Keynote Speaker, Oxford, United Kingdom)
14:00 - 15:30 Scanning Transmission Electron Microscopy of Eukaryotic Cells in Liquid. Niels DE JONGE (Keynote Speaker, Saarbrücken, Germany)
14:00 - 15:30
These lectures will be followed by the Outstanding Paper Award ceremony.
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Friday 02 September
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PL6
09:00 - 10:00

Plenary Lecture 6

09:00 - 10:00 Plenary Lecture 6 - Visualizing Crystal Growth Processes using Liquid Cell Transmission Electron Microscopy. Frances ROSS M. (Plenary Speaker, Yorktown Heights, USA)
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MS1-II
10:30 - 12:45

MS1: Structural materials, defects and phase transformations
SLOT II

Chairpersons: Patricia DONNADIEU (Chairperson, ST MARTIN D'HERES CEDEX, France), Randi HOLMESTAD (Chairperson, Trondheim, Norway), Simon RINGER (Chairperson, Sydney, Australia)
10:30 - 11:00 #8312 - MS01-S67 Recent investigations of small-scale plasticity mechanisms in 3D and small-sized systems using advanced in-situ TEM nanomechanical testing.
Recent investigations of small-scale plasticity mechanisms in 3D and small-sized systems using advanced in-situ TEM nanomechanical testing.

Recently, the development of a new generation of advanced instruments for in-situ TEM nanomechanical testing has allowed establishing a one-to-one relationship between load-displacement characteristics and stress-induced microstructure evolution in the transmission electron microscope (TEM). In the present work, it will be demonstrated that a step forward in the investigation of structural defects and small-scale plasticity mechanisms can be made by combining commercial [1] and in-house developed lab-on-chip [2] nanomechanical testing techniques with advanced TEM techniques.

High resolution aberration corrected TEM and STEM as well as automated crystallographic orientation and phase mapping in TEM (ACOM-TEM) have been used to reveal the nanoscale plasticity mechanisms controlling the mechanical responses of nanocrystalline (nc) metallic Al and Pd freestanding thin films. Special attention was paid to the strain rate sensitivity of nanostructured metallic materials involving thermally activated plasticity mechanisms [3] (Figure 1). Furthermore, the microstructure of nc Pd thin films subjected to hydriding cycles has been investigated in order to unravel the interaction mechanisms of hydrogen with dislocations and interfaces [4] as well as the influence of hydrogen cycling on the mechanical properties of the Pd films. An original method combining the measurement of dislocation mobility using in-situ TEM nanomechanical testing and dislocation dynamic (DD) simulations has also been used to investigate the plasticity of olivine small-sized crystals at low temperature. It demonstrates for the first time the possibility of characterizing the mechanical properties of specimens, which could be available in the form of micron-sized samples only [5].

More recently, quantitative nanobeam electron diffraction (NBED) was used to investigate the relationship between the local atomic order and the activation of shear transformation zones (STZs) in nanostructured ZrNi metallic glasses freestanding thin films. These films exhibit outstanding mechanical properties involving very large homogenous plastic deformation and giant ductility without the observation of mature shear bands until fracture. The basic principle of NBED is shown in Figure 2, consisting of a coherent electron beam with diameter of around 0.4 nm in order to produce two-dimensional diffraction patterns from atomic clusters with comparable size. Furthermore, high resolution HAADF-STEM and EELS revealed a heterogeneous microstructure with Ni-rich and Zr-rich regions exhibiting different atomic densities with characteristic length of 2-3 nm. The role of such behaviour in the absence of shear bands and the delay of fracture in the ZrNi thin films is discussed.

 

 

References

[1] H. Idrissi, A. Kobler, B. Amin-Ahmadi, M. Coulombier, M. Galceran, J-P Raskin, S.Godet, C. Kübel, T. Pardoen, D. Schryvers. Applied Physics Letters. 104 (2014) 101903

[2] H. Idrissi, B. Wang, M.S. Colla, J.P. Raskin, D. Schryvers, T. Pardoen. Advanced Materials. 23 (2011) 2119

[3] M.S. Colla, B. Amin-Ahmadi, H. Idrissi, L. Malet, S. Godet, J.P. Raskin, D. Schryvers, T. Pardoen. Nature communications. 6 (2015) 5922

[4] B. Amin-Ahmadi, D. Connetable, M. Fivel, D. Tanguy, R. Delmelle, S. Turner, L. Malet, S. Godet, T. Pardoen, J. Proost, D. Schryvers, H. Idrissi. Acta Materialia. 111 (2016) 253.

[5] H. Idrissi, C. Bollinger, F. Boioli, D. Schryvers, P. Cordier. Science Advances. 2 (2016) e1501671.


Hosni IDRISSI (Antwerpen, Belgium)
Invited
11:00 - 11:15 #4913 - MS01-OP200 In situ deformation of nanocrystalline Al2O3 thin films at room temperature.
In situ deformation of nanocrystalline Al2O3 thin films at room temperature.

Introduction

Recent TEM in situ mechanical experiments on single alumina nanoparticles have shown unexpected plasticity in room temperature alumina [1, 2]. These results push the theoretical boundaries of ceramics mechanical ductility towards comparable levels with metals. The important questions for materials science now are: (i) whether the plastic behaviour can be transferred into polycrystalline systems; (ii) what is the microstructure of such plastic polycrystalline system and (iii) what is the mechanism behind the hypothetical plasticity of the polycrystalline system. Relatively cheap and abundantly available engineering ceramic, such as alumina, with room temperature plasticity would be a breakthrough in the engineering ceramics field.

We report the findings of our study of polycrystalline alumina thin films, produced by pulsed laser deposition, with crystal size of < 5 nm using TEM and in situ TEM. Pulsed laser deposition is an extreme fabrication method where the deposition material is transformed into plasma by a short laser pulse. As the plasma quickly expands into vacuum or background gas the nucleation and growth of nanoparticles is rapidly quenched. Alumina produced this way has an exotic, nanocrystalline microstructure, and is a strong candidate for having the capability for room temperature plasticity. The more conventional TEM studies are focused on determining the as-received state of the material, grain size, morphology, crystal structure, grain boundary structure and whether any structural defects pre-exist since they have major impact on the mechanical response of the material. In situ TEM studies are focused on analysis of the material’s mechanical response (strain, dislocation activity, fracture etc.) to compression and indentation forces and look for evidence of the mechanism behind the mechanical response.

Experimental

Pulsed laser deposition (PLD) of Al2O3 thin films was done on various substrates including silicon, sapphire and sodium chloride using PLD coating equipment (Nano2Energy Laboratory, Italian Institute of Technology and Coldabtm PLD coating system, Picodeon Ltd Finland).

Two techniques were used to prepare TEM characterization samples from the PLD alumina coatings. First, TEM samples were prepared using a focused ion beam (FIB) lift-out technique and second, NaCl crystals coated with PLD thin film alumina were dissolved in water and the free-standing alumina film was deposited on a TEM grid. Figure 1 shows a TEM image of the microstructure of the PLD alumina film prepared using FIB lift-out method. Figure 2 shows a selected area electron diffraction pattern taken from the Figure 1 site indicating the presence of polycrystalline gamma-Al2O3.

For in situ TEM mechanical testing, R-plane sapphire substrates were used. Sapphire substrate was prepared using broad ion milling (Ilion II, Gatan Inc.) to produce an electron transparent, roughly 20° edge on the sapphire substrate. Furthermore a part of the edge was modified with FIB to produce electron transparent anvils with flattened tip in order to quantify the area of compression. The produced edge and anvils were either directly PLD coated or a PLD film separated from the NaCl substrate was transported on the sapphire edge or anvils.

The in situ tests were conducted using Nanofactorytm and Hysitron® PI 95 in situ TEM sample holders with JEOL 2010F and FEI Titan microscopes. In the test the PLD alumina film was compressed between the sapphire substrate and a diamond tip and the deformation process was filmed in situ together with synchronized strain and force measurement.

Acknowledgments
The authors thank the Centre LYonnais de Microscope (CLYM) for access to the electron microscopy equipment.

[1]           E. Calvié et al. Journal of European ceramic society, Vol. 32, No. 10, p. 2067-2071, 2012

[2]           E. Calvié, et al. Materials Letters, Vol. 119, p. 107-110, 2014


Erkka FRANKBERG (VILLEURBANNE CEDEX), Lucile JOLY-POTTUZ, Francisco GARCIA, Turkka SALMINEN, Thierry DOUILLARD, Bérangère LE SAINT, Ville KEKKONEN, Saumyadip CHAUDHURI, Jari LIIMATAINEN, Fabio DI FONZO, Erkki LEVÄNEN, Karine MASENELLI-VARLOT
11:15 - 11:30 #5791 - MS01-OP202 In Situ TEM Study of Fatigue Crack Growth of Cu Thin Films Using a Modified Nanoindentation System.
MS01-OP202 In Situ TEM Study of Fatigue Crack Growth of Cu Thin Films Using a Modified Nanoindentation System.

Material fatigue is often the limiting factor for many engineering cases. Repeated cyclic loading, even at stresses well below the monotonic yield stress of the material, leads to the accumulation of microstructural damage, crack initiation, crack growth, and eventual failure of the device. In terms of the number of loading cycles, the high cycle regime of >104 loading cycles is often of interest, although there are cases in which fatigue lifetimes may reach >>107 cycles. Cyclic loading experiments with bulk specimens can determine probabilistic fatigue lifetimes, however, a more fundamental understanding of the crack initiation and growth regimes is desired. These, early stage I, fatigue processes are by their very nature of limited size. Therefore, in situ nanomechanical testing in the transmission electron microscope is a good match in terms of both size and time scales.  However, to date no general capability for fatigue loading has been made available. For this set of experiments, an in situ nanomechanical system from Hysitron, Inc. was modified to use a sinusoidal loading function, capable of frequencies from 1 to 300Hz, where the resulting displacement amplitude and phase is measured using a lock-in amplifier. Thus it is now possible to reach the 106 cycle threshold within one hour. Here, observations of microstructural changes near propagating cracks in nanocrystalline Cu are presented.

Magnetron sputtered Cu films deposited on single crystal, then floated onto Push-to-Pull MEMS devices. These devices provide a micromechanical test frame converting an indentation into a tensile force. Focused ion beam milling was employed to remove excess film, leaving a tensile specimen [1]. Mechanical loading experiments were performed at frequencies from 1 to 200 Hz with mean loads of ≈100 µN, and load amplitudes of ≈50 µN. The total number of accumulated cycles typical exceeded 105 cycles. Local microstructural change was characterized by bright field TEM video during loading. Testing was periodically paused to collect additional still micrographs, as well as data collection by a precession electron diffraction-assisted automated orientation mapping technique [2]. Observable changes in contrast preceded crack nucleation. These cracks then stably propagated prior to rapid unstable failure. Localized microstructural changes occurred near the propagating crack including larger grains oriented differently from the surrounding matrix, figure 1, indicative of possible fatigue-induced grain growth [3].

References:

[1] A Kobler, et al, Ultramicroscopy 128 (2013), p.68-81.

[2] EF Rauch, et al, Zeitschrift Für Kristallographie 225 (2010), p.103-109.

[3] BL Boyce and HA Padilla, Metallurgical and Materials Transactions a-Physical Metallurgy and Materials Science 42A (2011), p.1793-1804.

[4] Work performed by K.H., B.L.B., and D.C.B. was fully supported by the Division of Materials Science and Engineering, Office of Basic Energy Sciences, U.S. Department of Energy. Work by W.M. was performed, in part, at the Center for Integrated Nanotechnologies, an Office of Science User Facility operated for the U.S. Department of Energy (DOE) Office of Science under proposal #U2014A0026. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-AC04-94AL85000.


Daniel BUFFORD, Douglas STAUFFER (Minneapolis, USA), William MOOK, S.a. Syed ASIF, Brad BOYCE, Khalid HATTAR
11:30 - 11:45 #5898 - MS01-OP205 Investigation of plasticity/fatigue mechanisms at interfaces in Ni using ex-situ and in-situ SEM/TEM micro/nano-mechanical testing.
MS01-OP205 Investigation of plasticity/fatigue mechanisms at interfaces in Ni using ex-situ and in-situ SEM/TEM micro/nano-mechanical testing.

The present work focuses on the fundamental plasticity/fatigue mechanisms operating at interfaces in micro/nano scale Ni samples. In-situ SEM fatigue tests have been performed on FIB prepared single and bi-crystal micropillars with well-known orientations as revealed by EBSD. Careful characterizations of the nature and the distribution of deformation dislocations, the character and the local structure of the interface as well as the mechanisms controlling the interaction between these defects under cyclic loads were performed using ex-situ TEM techniques including diffraction contrast imaging, automated crystallographic orientation and nanostrain mapping in TEM (ACOM-TEM) as well as electron tomography.

The primary TEM results obtained on single crystal micropillars after fatigue tests revealed the presence of dislocation walls structure as shown in Figure 1(a) and (b). ACOM-TEM revealed local changes of crystal orientation around 1-2 degrees at the position of the dislocation walls. Furthermore, systematic contrast analysis of dislocations in these areas confirmed that only slip systems with the highest Schmid factor have been activated. The analysis of micropillars with GBs subjected to fatigue tests has shown the accumulation of dislocations at the GBs (Figure 1(c) and (d)) without slip transfer or localized plasticity. Electron tomography has been used to investigate the 3D distribution and the interaction of deformation dislocations within the dislocation walls.  

In order to directly observe the plasticity mechanisms, quantified in-situ TEM tensile tests were performed on both single and bi-crystal samples using the Pi 95 picoIndenter instrument and a MEMS device called ‘’Push-to-Pull’’ (PTP) from Hysitron.Inc (Fig 2). In order to minimize the effect of FIB on the in-situ tensile samples, an original sample preparation method combining twin jet electro-polishing and FIB was used, see figure (2). Nucleation-controlled-plasticity has been observed with defects induced by FIB at the edges of the sample acting as preferential sources for the nucleation of deformation dislocations. Furthermore, the in-situ TEM nanotensile experiments revealed the elementary mechanisms controlling the interaction between dislocations and pre-selected GBs from the electro-polished thin foils, as the nucleation of dislocations from GB, see figure (3). These results indirectly shed light on the micropillar’s behaviour as the root cause of the deformation is connected to the FIB preparation and the dislocation/GB interaction mechanisms.


Vahid SAMAEEAGHMIYONI (Antwep, Belgium), Jonas GROTEN, Hosni IDRISSI, Ruth SCHWAIGER, Dominique SCHRYVERS
11:45 - 12:00 #6911 - MS01-OP215 Assessing chemical and microstructural evolution at interfaces of γ’- strengthened superalloys at high temperature by in situ TEM heating experiments.
Assessing chemical and microstructural evolution at interfaces of γ’- strengthened superalloys at high temperature by in situ TEM heating experiments.

Single crystal Ni-base superalloys exhibit outstanding high temperature properties and are used as turbine blade material in advanced gas turbines, where they withstand high temperatures and mechanical loads in harsh environments [1]. Their high temperature properties are associated with their unique two phase γ/γ' microstructure consisting of cuboidal γ’ precipitates, exhibiting the ordered L12 crystal structure (vol. frac. ca. 80%) ,  which are coherently embedded in a solid solution γ fcc matrix. To ensure precipitation hardening at temperatures relevant to gas turbine applications, 700-1100 °C, the stability of the γ/γ’ phases is of fundamental importance. At high temperatures the γ' - precipitates start to dissolve until a stable γ' - volume fraction is reached [2][3].

In this analysis the microstructural evolution of the γ and γ’ phase towards a new thermodynamic equilibrium, corresponding to a selected temperature, is investigated. In situ TEM studies with chip-based heating systems (by DENS solution) are performed on a single crystal Ni-based superalloy, ERBO1. Figure 1 presents a typical ERBO1 lamella, fixed in between the Pt spirals of a high temperature heater chip. The sample is heated to 950°C for different  time periods and is subsequently quenched (see heating profile on the right of Figure 1). The elemental distribution was measured by EDXS at room temperature, whereby the sample was tilted close to the [001] zone axis to minimize projection effects. Figure 2 shows the γ/γ' microstructure of the ERBO1 alloy with a black rectangle indicating the region where the ChemiSTEM EDXS measurements were conducted after each heating sequence. The Cr concentration profiles show that the transition towards a new thermodynamic state can indeed be resolved, with progressing time the Cr concentration decreases in the γ phase and increases in the γ’ phase. Such data contain valuable information on the kinetics of interdiffusion in a real superalloy microstructure. Quantitative evaluation of diffusion profiles will enable to simultaneously determine interdiffusion coefficients of various alloying elements. Finally the experimental results will be validated by complementary ex situ experiments on bulk samples employing quenching in a vertical oven. Furthermore, the results will be compared with thermodynamic and kinetic data from theoretical calculations.

[1] R.C.Reed, Superalloys Cambridge University Press, (2006)

[2] A.Royer et al., Acta Materialia, (1998) Vol46

[3] Y.M.Eggeler et al., Proc. International Microcopy Congress IMC18 2016, Prag, Czech 2014

Acknowledgement:  This work has been carried out within the framework of the SFB-TR 103 "Single Crystal Superalloys".


Yolita EGGELER (Erlangen, Germany), Daniel ENGE, Erdmann SPIECKER
12:00 - 12:15 #6242 - MS01-OP209 Electron beam induced in situ writing and recovering of vacancy layers in Ge2Sb2Te5 crystal lattice.
Electron beam induced in situ writing and recovering of vacancy layers in Ge2Sb2Te5 crystal lattice.

Phase change materials (PCMs), such as Ge-Sb-Te-based alloys, are of high interest due to their technologically eminent optical and electronic properties. Among the Ge-Sb-Te based PCMs, Ge2Sb2Te5 (GST225) is a well-known compound and the most used PCM. GST225 is utilized in optical and electronic data storage devices [1]. Technological relevant phases of GST225 are an amorphous phase, a metastable (cubic) phase containing 20% of intrinsic vacancies and a stable trigonal phase. Despite comprehensive studies on amorphisation-crystallisation processes of GST225, the phase transformation from the cubic to the trigonal phase has not been experimentally investigated up to now. In this work, the phase transformation is investigated in-situ in a Cs-corrected STEM by exposing distinct layers of GST225 crystal lattice to repeated line scanning of a focused electron beam [2].

The cubic GST225 phase was prepared by laser irradiation of amorphous GST225 thin films [2]. No planar defects such as vacancy layers (VLs) [3] were observed in the cubic GST225 phase (Fig. 1(a)) [2]. However, VLs can be intentionally produced in the GST225 phase by repeated line scanning of the focused electron beam along individual mixed GeSb/V layers, while no such defects can be created by scanning the electron beam along the Te layers (Fig.1(b)). Most notably, these VLs disappeared after repeated scanning of the focused electron beam over a scanning window covering these defects (Fig. 1(d)). Moreover, the Te-Te distance in the [001] direction is reduced in these newly formed VLs [2]. The observed ordering of vacancies into layers is due to energy transfer by inelastic interactions of the electron beam with the GeSb layer and takes place by diffusion of Ge and Sb atoms towards vacancies located in the nearest neighbouring GeSb/V layers [2]. Previous DFT calculations indicated that the ordering of vacancies into layers is energetically favourable [4]. It was also shown that the structural transition to the layered trigonal GST225 phase is driven by the ordering of vacancies in the cubic GST225 phase. However, the vacancy ordering necessarily occurs before complete formation of the vacancy planes, the process of which could be observed in this work.

From the above presented results and those reported in Refs. [3,4], a transformation mechanism between the cubic and trigonal GST225 phases can be proposed. The stable GST225 consists of nine layers alternatingly containing Te and GeSb in one unit cell, e.g. -Te-GeSb-Te-GeSb-Te-VL-Te-GeSb-Te-GeSb-, with intrinsic VL between adjacent Te layers (Fig. 2(a)). The stacking sequence in cubic GST225 is -Te-GeSb/V-Te-GeSb/V-Te-GeSb/V-Te-GeSb/V-Te-GeSb/V- (Fig. 2(b)) and the trigonal GST225 can therefore be derived from the cubic GST225 by removing the vacancies from the sublattice and accumulating them in the VLs. However, movement of Ge and Sb atoms in the cubic GST225 lattice along direction and subsequent shift of newly formed building blocks against each other are required to complete the trigonal lattice. Thus, this phase transition is driven by local short-distance movements of Ge and Sb atoms towards vacancies without long range diffusion and without change in composition of the parent cubic GST225 phase. Consequently, the phase change between the cubic and trigonal GST225 phases is a diffusionless transformation process similar to martensitic transformation [5].

[1] S.J. Feinleib et al., Appl. Phys. Lett. 18, 254 (1971).

[2] A. Lotnyk et al., Acta Mater. 105, 1 (2016).

[3] U. Ross, A. Lotnyk et al., Appl. Phys. Lett. 104, 121904 (2014).

[4] W. Zhang et al., Nature Mater. 11, 952 (2012).

[5] W. Zhang et al.,  Adv. Eng. Mater. 10, 67 (2008).


Andriy LOTNYK (Leipzig, Germany), Sabine BERNÜTZ, Xinxing SUN, Ulrich ROSS, Martin EHRHARDT, Bernd RAUSCHENBACH
12:15 - 12:30 #5813 - MS01-OP203 Surface Atomic Structure and Growth Mechanism of {1 0 0}-Faceted Perovskite Oxide Nanocubes.
MS01-OP203 Surface Atomic Structure and Growth Mechanism of {1 0 0}-Faceted Perovskite Oxide Nanocubes.

Monodisperse faceted nanocrystals, with controllable shapes and sizes, have been becoming increasingly important for applications in catalysis, gas sensing, and energy conversion. Such highly shape sensitive and selective physical and chemical properties inherently stem from the atomic and electronic structures on the faceted surfaces. For elemental nanocrystals, the atomic structure on the surfaces is determined by the geometric shape itself. However, for compound materials such as alloys and complex oxides, the compositional segregation and different terminating lattice planes on the surfaces have to be taken into account. In order to understand the unique property and growth mechanism of these nanocrystals, atomic details on the faceted surfaces need to be studied on the atomic level.

 

Strontium titanate (SrTiO3), strontium zirconate (SrZrO3) and their solid solutions (SrTi1−xZrxO3) are important members in the class of perovskite structures with a general formula ABO3 (Figure 1a). These materials are of great technological and fundamental importance not only because of their interesting properties, but also because of their ability to combine and to adjust these properties by chemical substitution with a wide variety of cations. However, despite the success of the synthesis of the {1 0 0}-faceted BaTiO3, SrTiO3, and Ba1−xSrxTiO3 nanocubes, whether the {1 0 0} facets of the nanocubes are terminated with AO (SrO) or BO2 (TiO2) is a question which still remains open for speculation and investigation. A comprehensive understanding of the growth mechanisms of these faceted nanocubes has not been achieved. Direct experimental evidence for the atomic structure on these nanocube surfaces has become one of the key steps in exploring the growth mechanisms.

 

In this work, we report on detailed studies of monodisperse {1 0 0}-faceted nanocubes of SrTi1−xZrxO3 (x = 0.25 to 0.5) which were synthesized using the oil-water two-phase solvothermal method. The surface atomic structure of the monodisperse faceted nanocrystals is determined by means of aberration-corrected high-angle annular dark-field scanning transmission electron microscopy (HAADF-STEM). On the basis of the structural features on the faceted surfaces, a deeper insight into the growth mechanisms could be obtained.

 

References and Acknowledgements

 (1) Du, H.; Jia, C.-L.; Mayer, J. Surface Atomic Structure and Growth Mechanism of Monodisperse {1 0 0}-Faceted Strontium Titanate Zirconate Nanocubes. Chem. Mater. 2016, 28 (2), 650–656.

(2)  Du, H.; Wohlrab, S.; Weiß, M.; Kaskel, S. Preparation of BaTiO3 Nanocrystals Using a Two-Phase Solvothermal Method. J. Mater. Chem. 2007, 17, 4605–4610.

(3) This work has been supported in parts by the Deutsche Forschungsgemeinschaft (SFB 917).


Hongchu DU (Aachen, Germany), Chun-Lin JIA, Joachim MAYER
12:30 - 12:45 #5892 - MS01-OP204 Investigation of solid state dewetting phenomena of epitaxial Al thin films on sapphire using electron microscopy.
MS01-OP204 Investigation of solid state dewetting phenomena of epitaxial Al thin films on sapphire using electron microscopy.

Solid state dewetting[1] is a topic of current research. Besides targeted patterning, research focuses on the mechanisms and its prevention to avoid degradation or failure of e.g. microelectronic devices. While several studies have addressed solid state dewetting of bare metallic films the focus of this study is laid on Al thin films covered with a native surface oxide layer. In order to simplify the complexity of the film microstructure we grew thin Al films by molecular beam epitaxy on (0001) single crystalline sapphire (α-Al2O3) substrates.

The microstructure and epitaxial orientation relationships of the Al films were analysed by scanning electron microscopy (SEM) and transmission electron microscopy (TEM) methods including electron backscatter diffraction (EBSD), selected area electron diffraction, high resolution TEM (HRTEM) and atomic resolved scanning TEM (STEM). The as-deposited Al films form two orientation relationships (ORI and ORII) both containing two twin-related growth variants: {111} Al || (0001) α-Al2O3 with ±<1‾10> Al || <101‾0> α-Al2O3 (OR I) and {111} Al || (0001) α-Al2O3 with ±<21‾1‾> Al || <101‾0> α-Al2O3 (OR II). The “±” indicates the twin related variants which differ by a 180° rotation around the surface normal. Cs-corrected high angle annular dark field (HAADF) HRSTEM micrographs (Fig. 1) of cross-sectional as-deposited samples indicated strain at the twin boundaries of OR I. In addition, a translation in at the twin boundary by 0.91±0.13 Å (HRTEM[5]: 0.84±0.17 Å) compared to an ideal, non-relaxed sigma three twin boundary was revealed.

After annealing for 1 to 45 hours below the melting point of aluminum (660°C) at 600°C, instead of Al islands[3] dark appearing features are observed in plan-view SEM micrographs (Fig. 3). This has been observed in literature for different model systems (Ni films on Al2O3[2] and Al films on Al2O3[4]). Two different models[1][2][4] exist to explain their formation. The capillary energy driven retraction of thin films can be described by classical solid state dewetting and would lead to holes of bare substrate surrounded by a rim slightly higher than the original film thickness.[1][2][3] In contrast, in the second model only volume and grain boundary diffusion can take place due to the formation of a thin oxide layer on top of the Al film. Film retraction below the oxide layer would result in drum-like voids.[4] Site-specific cross-sections prepared by focused ion beam and investigation by SEM, TEM and EDS revealed the presence of voids in the Al film with a thin cover layer (Fig. 2). Electron energy loss spectroscopy (EELS) of the surface layer revealed a phase transformation from amorphous alumina (as-deposited state) to γ-Al2O3 (after annealing) as proposed in literature from glancing incidence X-ray diffraction measurements.[4] Although solid state dewetting was done at 600°C, facetted single crystalline sapphire ridges form at the Al/sapphire/void triple phase boundary as a consequence of the capillary energy force component acting perpendicular to the film/substrate interface. The thickness of the Al film increases locally in the region of the sapphire ridge compared the original film thickness (Fig. 2). The drum-like features possess distinct facets and reflect the hexagonal symmetry of the basal plane of the sapphire substrate (Fig. 3). The EBSD investigations indicate that the grain boundaries act as initial points of void formation.

References

[1] C. V. Thompson, Annu. Rev. Mater. Res., 42, 399-434 (2012).

[2] E. Rabkin et al., Acta Mater., 74, 30-38 (2014).

[3] W. Kaplan et al., J. Mater. Sci., 48, 5681-5717 (2013).

[4] S. Dutta et al., J. Am. Ceram. Soc., 95, 823-830 (2012).

[5] G. Dehm et al., Acta Mater., 50, 5021-5032 (2002).


Stefan HIEKE (Düsseldorf, Germany), Gerhard DEHM, Christina SCHEU
Amphithéâtre

"Friday 02 September"

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IM8-III
10:30 - 12:45

IM8: Spectromicroscopies and analytical microscopy
SLOT III

Chairpersons: Gerald KOTHLEITNER (Chairperson, Graz, Austria), Anders MEIBOM (Chairperson, Lausanne, Switzerland), Bénédicte WAROT-FONROSE (Chairperson, CEMES, Toulouse, France)
10:30 - 11:00 #8360 - IM08-S55 Quantitative Nanoplasmonics in the TEM.
Quantitative Nanoplasmonics in the TEM.

Quantitative Nanoplasmonics in the TEM

 

Michel Bosman1

 

1 Institute of Materials Research and Engineering, A*STAR (Agency for Science, Technology and Research), 2 Fusionopolis Way, #08-03 Innovis, Singapore 138634. michel.bosman@gmail.com

 

Scanning TEM (STEM)-based surface plasmon characterization will be discussed in this paper, and it will be argued that some plasmon properties can be measured quantitatively in the STEM, by carefully analyzing the local spectral response. Examples will be given that demonstrate the unique capability of STEM-based plasmon analysis in comparison with other experimental techniques.

Some very impressive experimental results have recently been published in which plasmons on subwavelength metal nanostructures were mapped with 1-100 fs time resolution. These include time-domain techniques based on photoelectron emission microscopy (PEEM) [1, 2], time-resolved scanning near-field optical microscopy (SNOM) [3], ultrafast TEM [4] and even plasmon mapping with free electron lasers [5].

STEM-based electron energy-loss spectroscopy (EELS) is performed in the energy/frequency domain, and it has a long history as an experimental technique for surface plasmon characterization [6-17]. However, since surface plasmon resonances are damped harmonic oscillators, it is possible to interpret the EELS plasmon spectra as Fourier-transforms of oscillations in the time-domain [18].

This paper will explore the implications of this approach, and will apply it to quantify local dynamic materials properties [19].

 

Acknowledgements:

The National Research Foundation (NRF) is kindly acknowledged for supporting this research under the CRP program (award No. NRF-CRP 8-2011-07). This work results from close collaborations with the groups of Joel Yang (SUTD, Singapore), Christian Nijhuis (NUS, Singapore), Erik Dujardin (CE-MES, France). Antonio Fernández-Domínguez (UAM, Spain), Wu Lin & Bai Ping (IHPC, Singapore).

 

[1] MI Stockman et al. Nature Photon. 1, 539-544 (2007).

[2] E Mårsell et al. Nano Lett. 15, 6601-6608 (2015).

[3] Y. Nishiyama et al. J. Phys. Chem. C 119, 16215-16222 (2015).

[4] A Yurtsever et al. Science 335, 59–64 (2012).

[5] SE Irvine et al., Phys. Rev. Lett. 93 (18) 184801 (2004).

[6] C Powell and JB Swan, Phys. Rev. 115, 869–875 (1959).

[7] PE Batson, Phys. Rev. Lett. 49, 936–940 (1982).

[8] ZL Wang, JM Cowley, Ultramicrosopy 21, 347–366 (1987).

[9] F Ouyang, PE Batson and M Isaacson, Phys. Rev. B 46, 15421–15425 (1992).

[10] J Nelayah et al., Nature Phys. 3, 348 – 353 (2007).

[11] M Bosman et al., Nanotechnology 18, 165505 (2007).

[12] B Schaffer et al., Phys. Rev. B 041401 (2009).

[13] B. Ögüt et al. ACS Nano 5 (8) 6701-6706 (2011).

[13] H Duan et al. Nano Lett. 12, 1683–1689 (2012).

[14] M Bosman et al. ACS Nano 6 (1) 319-326 (2012).

[15] D Rossouw and GA Botton, Phys. Rev. Lett. 110, 066801 (2013).

[16] S Raza et al., Optics Express 21 (22) 27344 (2013).

[17] A Teulle et al. Nature Materials 14, 87-94 (2015).

[18] M Bosman et al. Scientific Reports 3 1312 (2013).

[19] M Bosman et al. Scientific Reports 4 5537 (2014).


Michel BOSMAN (, Singapore)
Invited
11:00 - 11:15 #5798 - IM08-OP143 Localized surface plasmon resonance mapping on aluminium voids with three-dimensional nanostructures.
Localized surface plasmon resonance mapping on aluminium voids with three-dimensional nanostructures.

     Today’s nanotechnology has enabled the fabrication of metallic nanoparticles with a variety of geometries, greatly advancing the research field of plasmonics. The complementary system of the inverted nanostructures such as nano-voids, however, has so far been limited to either 2D holes or spherical voids, owing to the difficulty in creating voids with well-defined 3D geometries. Here we present the first localized surface plasmon resonance (LSPR) study, both experimentally and theoretically, on aluminium nano-voids in the shape of truncated octahedra.

    Nano-voids were made in high-purity aluminium using an annealing and quenching treatment.1 To characterize LSPRs of voids, we used electron energy-loss spectroscopy (EELS) in a scanning transmission electron microscope (STEM) – an aberration-corrected FEI Titan operating at 80 kV. The lower accelerating voltage mitigates irradiation damage on aluminium, which is critical to perform reliable STEM-EELS mapping on voids. To confirm experimental results, electrodynamic EELS calculations were carried out based on electron-driven discrete dipole approximation (e-DDA).2

    Our results show that these aluminium nano-voids exhibit strongly localized field enhancements, with the LSPR energies 10.7 - 13.3 eV (116 - 93 nm), well beyond the conventional LSPR spectrum range. The LSPR tunability was demonstrated by tailoring the shape of nano-voids using controlled electron irradiation. Furthermore, owing to the simplicity of the nano-void system which is free of aluminium oxidation and supporting substrates, we demonstrate that the intrinsic LSPR properties of pure Al nanoparticles can be revealed from nano-voids characterization using the sum rule for the complementary systems. Combined with the low cost and mass producibility of Al, our results indicate that both the Al nano-voids and nanoparticles can effectively expand the available plasmonic spectrum to the extreme UV region (≤ 124 nm), which opens possibilites for applications such as plasmon-enhanced UV photoemission spectroscopy and photoionization.

 

Acknowledgements

This work was supported by the Australian Research Council (ARC) grant DP110104734 and DP150104483 and a Monash University IDR grant. The FEI Titan3 80-300 S/TEM at Monash Centre for Electron Microscopy was funded by the ARC Grant LE0454166.

 

References:

[1] Z. Zhang, T. Liu, A. E. Smith, N. V. Medhekar, P. N. H. Nakashima and L. Bourgeois, submitted. (2016).

[2] N. W. Bigelow, A. Vaschillo, V. Iberi, J. P. Camden and D. J. Masiello, ACS Nano. 6, 7497-7504 (2012).


Ye ZHU, Philip NAKASHIMA, Alison FUNSTON, Laure BOURGEOIS, Joanne ETHERIDGE (Melbourne, Australia)
11:15 - 11:30 #5907 - IM08-OP145 Surface plasmon coupling revisited with electron energy loss spectroscopy.
Surface plasmon coupling revisited with electron energy loss spectroscopy.

In the last fifteen years or so, a significant amount of research activities took place in the field of metal nanoparticle plasmonics probed by fast electron beam. Local electron probe techniques like electron energy-loss spectroscopy (EELS) and cathodoluminescence (CL) have advanced very fast during this time. Both these techniques helped us to gain considerable insight into the plasmonic properties of metallic nanostructures [1,2].  One of the many interesting nanostructures are the metal nanoparticle dimers. They can confine a huge amount of field in the gap. As the modes can be tuned precisely by changing the separation between the nanoparticles, they bear the promise to be used as sensors. It is well known that as the two individual particles approach each other, bonding and antibonding modes appear. Bonding and antibonding corresponds to in-phase and out-of-phase interaction of the individual particle plasmons. Analogous to the molecular orbital theory, the bonding mode appears at lower energy and the antibonding mode at higher energy with respect to the individual particle plasmon mode [3]. With electron beam we can probe the precise location of the particle dimer to see which mode is excited at what location. Even though there is a wealth of literature on the plasmonic modes of individual metallic nanostructure, a systematic experimental study of coupled plasmons is deficient.

The central idea of the current work is to develop a deeper understanding on the coupling of the nanoparticle plasmons when they are brought close to each other (a few nanometers). For this purpose, we have chosen a cross shaped metal nanoparticle (Figure 1). We choose this structure for easy tuning of plasmon modes along the length of the rods by changing the rod length and because it is easy to model numerically. To have a detailed idea on the underlying physics, we start with the basic building block of the cross, i.e. a single nano rod. Then we increase the complexity of the structure by adding two rods perpendicularly to make a cross, and finally bringing two crosses close together to make a dimer. We make EELS on all of these structures and see the evolution of the modes. In this way, we will be able to explore the exact formation of different modes and the coupling between them.

To realize our idea, we have performed electron beam lithography to make silver nanostructures on Silicon Nitride substrate. EELS experiments are performed using a scanning transmission electron microscope (STEM) fitted with homemade EELS detection system [4]. To gain insight about the plasmonic modes, we perform 3D boundary element method (BEM) simulations [5] and compare with the experimental data. A representative EELS spectrum and the 2D plasmon maps has been shown in Figure 2.

In the conference, we will present and discuss our experimental and simulation results. This will provide new insight into the physics of plasmon coupling.

References:

[1] M. Kociak and O. Stéphan, Chem. Soc. Rev. 2014, 43, 3865.
[2] F. J.  García de Abajo, Rev. Mod. Phys. 2010, 82, 209.
[3] E. Prodan et al. Science, 2003, 302, 419.
[4] J. Nelayah, et al. Nat. Phys. 2007, 3, 348.
[5] U. Hohenester and A. Trugler, Comput. Phys. Commun. 2012, 183, 370.


Pabitra DAS (ORSAY), Hugo LOURENÇO MARTINS, Luiz TIZEI, Mathieu KOCIAK
11:30 - 11:45 #6352 - IM08-OP153 Tailoring the wave function of electron probes for the selective detection of plasmonic modes.
Tailoring the wave function of electron probes for the selective detection of plasmonic modes.

Electronic spectroscopies are important in the study of localised surface plasmon resonances of metallic nanostructures, allowing to detect and image the strong spatial variations in the electrical field of the induced resonances of a single nanoparticle [1].

These techniques do however present some drawback when compared to their optical counterparts. While optical spectroscopies can make use of polarisation to directionally probe the response of a nanoparticle, an electronic beam can’t discriminate between energy-degenerate eigenmodes and is also blind to optical activity and dichroism.

Here we present a way to expand the applicability of EELS to the characterisation of plasmonic resonances by exploiting the recently developed methods of electron beam shaping through phase manipulation [3].

This radically new approach is based on the idea of tailoring the electronic probe to fit the properties under investigation that can then be selectively detected, allowing to perform new measurements that were previously impossible [3].

In particular, we first show how the phase in the electron beam's complex wave function couples to the electric potential of the plasmonic excitation (see fig1), allowing to selectively detect localised plasmonic excitations that possess the same symmetry as the electron probe [4].

While this concept is entirely general and potentially applicable to any plasmonic resonance, we decide to focus a first experimental demonstration on detecting the dipolar mode of a nanorod.

The ideal probe for this purpose is formed by two intensity lobes opposite in phase as shown in figure 1a, which we successfully generate in the TEM by applying state of the art phase manipulation techniques.

Finally, we show experimental proof of the method’s effectiveness on purposefully made test sample, demonstrating the viability of this new approach and opening to a new generation of plasmon oriented TEM experiments, that will expand in parallel with the availability of wave manipulation methods.

Acknowledgments:

GG, AB and JV acknowledge funding from the European Research Council under the 7th Framework Program (FP7), ERC Starting Grant No. 278510-VORTEX.

References:

[1] J. Nelayah et al., Nat. Phys. 3, 348 (2007).

[2] F.-P. Schmidt et al., Nano Lett. 12, 5780 (2012).

[3] G. Guzzinati et al., Ultramicroscopy 151, 85 (2015).

[4] H. Lorenço-Martins, M. Kociak, in preparation.


Giulio GUZZINATI (Antwerpen, Belgium), Hugo LOURENÇO-MARTINS, Armand BÉCHÉ, Mathieu KOCIAK, Jerôme MARTIN, Jo VERBEECK
11:45 - 12:00 #6805 - IM08-OP160 Monochromated Low-Voltage EELS of Optical Resonances in Quantum Materials.
Monochromated Low-Voltage EELS of Optical Resonances in Quantum Materials.

We have imaged and produced EELS spectra of Vacancy (NV) centers in diamond with our Zeiss Libra TEM [1] with a monochromated electron source and in-column energy filter, Fig. 1. With monochromated electron energy loss spectroscopy (EELS) we measure the amount of energy loss that an electron undergoes; this includes optical resonances and inter and intra band transitions but also of course the Cherenkov radiation background.  The low acceleration voltage of 40 kV directly reduces the background noise of the Cherenkov radiation.  According to the photoluminescence spectra, we find a resonance at 1.9 eV (corresponding to 638 nm wavelength). We have also demonstrated an unexpectedly strong surface-plasmonic absorption at the interface of silver and high-index dielectrics based on electron and photon spectroscopy [2]. The measured bandwidth and intensity of absorption deviate significantly from the classical theory. Our density-functional calculation well predicts the occurrence of this phenomenon. It reveals that due to the low metal-to-dielectric work function at such interfaces, conduction electrons can display a drastic quantum spillover, causing the interfacial electron-hole pair production to dominate the decay of surface plasmons.  This finding can be of fundamental importance in understanding and designing quantum nanoplasmonic devices that utilize noble metals and high-index dielectrics.

Depending on the composition, Quantum Materials may act as conductors, insulators, semiconductors or even as superconductors. Combinations of different quantum materials are of high interest to explore new phenomena and act as the foundation for future electronic devices at the nanometer scale. Our quantum materials research is widely spread, reaching from defect formation in graphene to the characterization of hybrid quantum materials. We present our work utilizing Low-Voltage Monochromated EELS and Low-Voltage High-Resolution Electron Microscopy (LV HREM). Together, these often improve the contrast to damage ratio obtained on a large class of samples, such as Quantum Materials. 

Fe3Sn2 is a rare metallic Kagome ferromagnet, which synthesis as a single crystal has not previously been reported (Fig. 2). We study this single crystal as well as other topological insulators with the particular interest in the correlated behavior in topologically non-trivial materials.  The (S)TEM images mapped with  low voltage EELS show the atomic structure of the layered material(Fig. 2), and the magnetic force microscopy measurements reveal the magnetic anisotropy of the crystal on the surface.  Monochromated EELS is the key to all this work, due to increased signal to noise and background and/or ZLP reduction.

References

  1. D.C. Bell, C.J. Russo and D. Kolmykov, “40 keV Atomic Resolution TEM”, Ultramicroscopy. 114, pp 31-37 (2012)
  2. D. Jin, Q. Hu, D. Neuhauser, F. von Cube, Y. Yang, R. Sachan, T.S. Luk, D.C. Bell, and N.X. Fang. “Quantum-Spillover-Enhanced Surface-Plasmonic Absorption at the Interface of Silver and High-Index Dielectrics”. Phys. Rev. Lett., 115(19), p.193901 (2015)
  3. This work was supported by the STC, Center for Integrated Quantum Materials, NSF Grant No. DMR-1231319


David BELL (Cambridge, USA), Felix VONCUBE, Peter REZ, Toshihiro AOKI
12:00 - 12:15 #6958 - IM08-OP162 Electron energy loss spectroscopy (EELS) fingerprints of p- and n-type doping in graphene.
Electron energy loss spectroscopy (EELS) fingerprints of p- and n-type doping in graphene.

Doping is a great way to make nanomaterials suitable for use in nanoscale devices and electronics. Dopant atoms supply mobile charge carriers in the form of electrons (n-type) or holes (p-type) whilst leaving the material neutral, and the physical interface between p- and n-type materials - the pn junction diode - is a fundamental building block of electronic circuits. There is a general consensus that moving beyond the (mainly) Si-, Ge- and GaAs-based technology of the last seventy years is highly desirable, so there is currently lots of interest in finding superior replacements for next-generation electronics. Graphene's discovery [1] lies at the root of this renewed interest, and it now seems likely that graphene, or nanomaterials inspired by graphene, will find their way into consumer and industrial electronics in some significant form quite soon.

 

To make progress, we need information about the electronic structure of the material of interest, and how doping affects that electronic structure. Atomic-resolution electron energy loss spectroscopy (EELS) is a great way to achieve this because it can reveal the bonding around an individual dopant atom. This insight can then be directly compared with theoretical electronic structure calculations in the form of density functional theory (DFT) to yield a detailed understanding of the electronic structure and the potential implications for use in nanoscale devices.

 

In this talk I shall present atomic-resolution K-edge EEL spectra for the case of substitutional B and N dopants in graphene synthesised using low-energy ion implantation, and I shall explain how a careful comparison with theoretical DFT calculations indicates that the EELS data is in fact the first direct experimental evidence of p- and n-type doping in graphene. [2] This approach demonstrates how potentially very lucrative information can be extracted from joint studies of experimental and theoretical EELS, and it could be readily extended to other nanomaterials.

[1] K. S. Novoselov, A. K. Geim, S.V. Morozov, D. Jiang, Y. Zhang, S.V. Dubonos, I. V. Grigorieva and A.A. Firsov Science 306, 666 (2010)

[2] D. Kepaptsoglou, T. P. Hardcastle, C. R. Seabourne, U. Bangert, R. Zan, J. A. Amani, H. Hofsäss, R. J Nicholls, R. M. D. Brydson, A. J. Scott, Q. M. Ramasse ACS Nano 9, 11398 (2015)


Demie KEPAPTSOGLOU, Trevor HARDCASTLE (Leeds, United Kingdom), Che SEABOURNE, Ursel BANGERT, Recep ZAN, Julian AMANI, Hans HOFSÄSS, Rebecca NICHOLLS, Rik BRYDSON, Andrew SCOTT, Quentin RAMASSE
12:15 - 12:30 #6113 - IM08-OP151 Near Band Edge excitation in 2D materials by Transmission Electron Microscopy.
Near Band Edge excitation in 2D materials by Transmission Electron Microscopy.

In this work, we report on the characterization of near band edge excitation by electron energy loss spectroscopy (EELS). This technique is operated in a Transmission Electron Microscope and allows to rely the structure of a material obtained by HR-TEM with its chemical and physical properties deduced from EELS. Indeed, when the energy transfered by a transmitted electron remains below 50 eV, it is possible to have access to the electronic structure of the material and more precisely to its dielectric function. [1] In other words, we are able to obtain informations such as, plasmon resonances, interband transitions and band gap measurements.

 

We used a Libra 200 equipped with an electrostatic monochromator operating at 80 kV. Thanks to the in-column filter, energy loss signal is recorded on a CCD camera with a spectral resolution of 150 meV. The sharp cut-off of the omega filter allows to probe the dielectric properties of semiconducting materials down to 1eV losses. We are able to determine bandgaps in several 2D materials and rely them to the number of layers. For instance, we can see the blue shift of the “optical absorption” from several MoS2 layers (1.4 eV) down to a single layer (1.8 eV).

 

Recently, thanks to dedicated operating modes [2,3], we have been able to obtain additional informations on the plasmons and interband transitions over the Brillouin Zone in hexagonal Boron Nitride (hBN). Energy Filtered scattering patterns have been recorded in the TEM to have access to the symmetries of the dipole matrix elements involved in the observed transitions. Moreover, by dispersing the energy along specific crystallographic directions, we accessed to the related dispersion of plasmons and interband transitions with the so-called ω-q maps [2] as representated on fig 1. We show that, due to a strong electron-hole interaction, the observed dispersion is related to the one of the exciton [4]. The experimental results are in good agreements with inelastic X-ray scattering experiments [5] and calculations [6] as shown on fig 3.



[1] R.E. Egerton, Electron Energy-Loss Spectroscopy in the Electron Microscope, 3rd edition, Springer (2011)

[2] P. Wachsmuth et al., Phys. Rev. B 88, 075433 (2013)

[3] G. Radtke, G. Botton, J. Verbeeck, Ultramicroscopy 106, 1082 (2006)

[4] F. Fossard, L. Schué, F. Ducastelle, J. Barjon, A. Loiseau, in preparation

[5] S. Galambosi, L. Wirtz et al., Phys. Rev. B 83, 081413(R) (2011)

[6] G. Fugallo, M. Aramini, J. Koskelo, K. Watanabe, T. Taniguchi, M. Hakala, S. Huotari, M. Gatti, and F. Sottile, Phys. Rev. B 92, 165122 (2015)


Frédéric FOSSARD (CNRS-ONERA), Léonard SCHUÉ, Etienne GAUFRÈS, Amandine ANDRIEUX, François DUCASTELLE, Annick LOISEAU
12:30 - 12:45 #6064 - IM08-OP150 Vibrational Spectroscopy in the Electron Microscope.
Vibrational Spectroscopy in the Electron Microscope.

Vibrational spectroscopy in the scanning transmission electron microscope (STEM) was introduced two years ago [1, 2], and it has made much progress since.  It has opened a new window on the world of materials, in which nothing is quite like it was before.  

 

The main vibrational modes occur at energies of 0-500 meV, and exploring them requires a monochromated STEM-EELS system with an energy resolution

 

The energy of vibrational modes is given by ∆E = ħ √(k/m), where k is the force constant of the atomic bond and m the effective mass of the vibrating nucleus.  Strongly bonded light atoms give the highest vibrational energies, starting with hydrogen, an element that is nearly invisible in traditional electron microscopy.  Fig. 1(a) shows a vibrational spectrum of Ca(OH)2 [3], in which the peak at 452 meV is due to O-H stretch, and Fig. 1(b) shows the particle from which the spectrum was recorded.  Fig. 1(c) shows how the strength of the vibrational peak varied with the distance from the particle: the signal decayed only gradually outside the particle, and was still 50% strong 35 nm away.

 

Fig. 2 shows an EEL spectrum of guanine compared to an IR spectrum from the same specimen [4].  The agreement between the two types of spectra is very good. EELS has worse energy resolution (~10 meV), but much better spatial resolution than regular IR.  As is typical of vibrational spectroscopies, the different peaks can be assigned to different types of bonds and vibration modes (see the inset in Fig. 1).  

 

In order to minimize radiation damage, both the OH and guanine spectra were acquired in an “aloof” mode, with the electron beam parked just outside the sample [1, 3-5].  Aloof spectroscopy makes it possible to select the maximum energy of the beam-sample interaction, simply by adjusting the beam-sample distance [4,5].  Its great import to vibrational EELS is that the vibrational signal can be excited even when the interaction energy is limited so that ionization damage of the sample cannot occur.  It may even be possible to spatially map the vibrational features of a beam-sensitive sample by “coarse step (leapfrog) scanning”: scanning with a discrete pixel increment of 10-100 nm, so that even though the area that the beam traverses in each new position is essentially destroyed, large parts of the sample are not touched by the beam and remain in a pristine state [6]. 

 

We gratefully acknowledge the use of facilities within the LeRoy Eyring Center for Solid State Science at ASU and IAMDN at Rutgers, and grants NSF MRI-R2 #959905, DE-SC0004954, and DE-SC0005132.

 

References

[1] O.L. Krivanek et al., Nature 514 (2014) 209.

[2] T. Miata et al., Microscopy 63 (2014) 377.

[3] P.A. Crozier et al., Microsc. and Microan. 21 (Suppl 3, 2015) 1473.

[4] P. Rez et al., Nature Comm. 7 (2016) DOI: 10.1038/ncomms10945.

[5] R.F. Egerton, Ultramicroscopy 159 (2015) 95.

[6] R.F. Egerton et al., submitted to Microsc. and Microan. 22 (Suppl 3, 2016).


Ondrej KRIVANEK (Kirkland, USA), Toshihiro AOKI, Philip BATSON, Peter CROZIER, Niklas DELLBY, Raymond EGERTON, Tracy LOVEJOY, Peter REZ
Salle Bellecour 1,2,3

"Friday 02 September"

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IM3-III
10:30 - 12:45

IM3: Near-field, photon beam and unconventional microscopies
SLOT III

Chairpersons: Emmanuel BEAUREPAIRE (Chairperson, Polytechnique, Paris, France), Christian COLLIEX (Chairperson, LPS, Orsay, France), Jörg ENDERLEIN (Chairperson, Göttingen, Germany), Andreas ENGEL (Chairperson, Delft, The Netherlands), Ernst H.K. STELZER (Professor) (Chairperson, Frankfurt am Main, Germany)
10:30 - 11:00 #7320 - IM03-S40 Three-dimensional nanomechanical spectroscopy of soft matter-liquid interfaces.
Three-dimensional nanomechanical spectroscopy of soft matter-liquid interfaces.

This contribution is devided in two sections. The first section is devoted to examine some relevant issues regarding force microscopy imaging of biomolecules such as spatial resolution, molecule deformation and quantitative mapping of mechanical properties. Specifically, we present a method to obtain the stress-strain curve of a single protein in liquid. The second section is devoted to present an advanced AFM method to genearte three dimensional maps of  solid-liquid interfaces. We develop a force microscope method to map the 3D structure of solid-liquid interfaces. The maps provide atomic-scale spatial resolution images of the formation of hydration layers and the adsorption of ions on solid-liquid interfaces.  Some applications include to resolve the atomic structure of hydration layers generated from alkali chloride solutions on an atomically flat mica surface. 

 

D. Martin-Jimenez, E. Chacon, P. Tarazona, R. Garcia, Submitted    

E.T. Herruzo, A.P. Perrino and R. Garcia, Nature Commun. 5, 3126  (2014)     

R. Garcia, E.T. Herruzo, Nat. Nanotechnol. 7, 217-226 (2012)

                                                                                                                                                                                                                                                                                                         

 


Ricardo GARCIA (Madrid, Spain)
Invited
11:00 - 11:15 #7065 - IM03-OP102 Assessment of doping profiles in semiconductor nanowires by scanning probe microscopy: Study of p- type doping in ZnO nanowires.
Assessment of doping profiles in semiconductor nanowires by scanning probe microscopy: Study of p- type doping in ZnO nanowires.

Methods to measure and quantitatively determine the doping profile in semiconductor nanowires ( NW)  are strongly requested for understanding the doping incorporation in such  one-dimensional  structures and so for developing technology using them. In the last two decades, scanning capacitance microscopy (SCM) and scanning spreading resistance microscopy (SSRM) based on atomic force microscopy, has emerged as promising tools for two-dimensional high resolution carrier/dopant profiling. In SCM, the capacitance change providing by an alternating bias applied between the tip/sample system under a DC bias to alternately accumulate and deplete carriers within the semiconductor underneath the local tip is dependent on the local carrier concentration of the semiconductor. In SSRM, the local resistivity is determined via the resistance measurement at the tip/sample system allowing the determination of the doping concentration. These two techniques need of an accurate calibration method for a quantitative doping analysis.

In this communication, we present first a calibration method based on cross-sectional scanning of multilayers samples with different Ga doping concentration allowing the quantitative measurement of n-type ZnO doping by SCM and SSRM. Then, to study ZnO NWs, we have developed a methodology of sample preparation, based on dip-coating filling of NWs field. The dip-coating parameters as coating solution, removal rate and NW field morphology have been controlled by SEM, ellipsometry and atomic force microscopy topography in order to optimize the filling and polishing process.  

One important results has been to be able to measure using SCM and SSRM,  the non-intentionally n-type doping (nid)  of the ZnO nanowires, well estimated at 21018cm-3, explaining  the difficulty to turn these NWs  into p-type  during p-type doping experiments, a crucial problematic in ZnO.  Using antimony (Sb) doping in nid ZnO core/ Sb ZnO shell NW structures, we have successfully determined the decrease of carrier concentration with respect to the nid core ZnO, which can be ascribed to the formation of Sb-related acceptors compensating the native donors. The understanding of this electric compensation mechanism is the clear signature of  p-type Sb doping  feasibility in ZnO NW.  This important result opens the way to succeed in the p-type doping in ZnO.

The generalization of this doping profiling methodology to other semiconductors NW could be pointed out.


Georges BREMOND (Villeurbanne), Lin WANG, Jean-Michel CHAUVEAU, Corine SARTEL, Vincent SALLET
11:15 - 11:30 #5301 - IM03-OP085 Cathodoluminescence microscopy of biological samples for correlative light and electron microscopy (CLEM) using organic fluorophores.
Cathodoluminescence microscopy of biological samples for correlative light and electron microscopy (CLEM) using organic fluorophores.

A CLEM study in biology aims at providing knowledge on the identity and localisation of cellular constituents of interest within a cell's ultrastructure. The key limitation of such experiments, however, is the registration precision between light and electron microscopic data. Precise registration is usually achieved using fiducial markers, visible in both imaging modalities [1].

Integrated microscopes, i.e. light and electron microscopy are performed in one machine [2], in contrast, offer an inherent high-precision correlation. In such systems, photon emission from the sample, is either triggered by a light source (e.g. laser) or the electron beam. A glass objective lens, mounted below the sample collects the emitte light, that is ultimately detected by a photomultiplier tube or a camera [3].

This geometry is particularly advantageous for detecting a sample's cathodoluminescence (CL) signal, since roughly 80% of the emitted photons are emitted into the forward direction [3], and it allows for simultaneous, unobstructed secondary electron (SE) imaging.

We evaluate a CL detector similar to the one described by Narváez et al. [3], with respect to its applicability to CL imaging of small synthetic fluorophores. As these fluorophores are readily damaged by the electron beam [4], we study the CL signal of these molecules dependent on primary energy and beam current. Based on the results of these experiments we image the CL signal of fluorescently labelled, resin embedded biological specimen. Our data indicate the feasibility of CL imaging for CLEM of biological specimen.

The CL signal of 200 nm sized fluorescently labelled polystyrene beads, scales with primary energy (figure 1). Increasing the beam current increases the CL intensity (figure 2A) of individual images. Comparing image series taken at different beam currents (240 pA (240 frames), 480 pA (120 frames) and 1440 pA (40 frames)), a dose rate effect on the cumulative retrievable intensity (figure 2B) is observed. The signal-to-noise ratio can be maximized by either repeated scanning of the same area on the sample at low beam currents or by short pixel dwell times at higher beam currents. In both cases the final image is obtained by averaging the acquired frames.

Analyses of the influence of beam current and primary energy on the CL signal were performed at a pixel dwell time of 6.4 µs. Cumulative intensities in figure 2 are presented as mean ± standard deviation of 4 different areas on the sample per condition.

Having established that CL imaging of organic fluorophores is feasible, we imaged DNA stained with 1 µM Sytox® Green in mammalian cells. Figure 3 shows CL and SE images of 100 nm sections, of LR White embedded Hela cells before and after staining, deposited on ITO (Indium Tin Oxide) coated cover slips. CL signal of stained cell nuclei was detected at different magnifications. Following the imaging guidelines established for fluorescently labelled beads, CL of stained DNA was recorded by several fast scans (100 ns pixel dwell time) of the same position and averaging of the individual frames. Sections were imaged at 1 kV (unstained cells) and 2 kV (stained cells) primary energy, respectively, and a beam current of 480 pA.

Currently we investigate, whether low temperatures (120 K) increase the beam stability of the CL signal. Another factor we currently address is the background signal in images of resin embedded samples (Figure 3), which results from photon emission upon electron beam excitation of the resin or the glass substrate.

References:

[1] Kukulski et al., J. Cell Biol. 192 (2011), p. 111

[2] Peddie et al., Ultramicroscopy 143 (2014), p. 3

[3] Narváez et al., Opt. Express 21 (2013), p. 29968

[4] Niitsuma et al., J Electron Microsc 54 (2005), p. 325

[5] Our work is funded by the German Federal Ministry of Education and Research (13GW0044).

[6] We thank Marina van Ark for technical assistance.


Christopher SCHMID (Heidelberg, Germany), Klaus YSERENTANT, Lucian STEFAN, Dirk-Peter HERTEN, Rasmus SCHRÖDER
11:30 - 12:00 #8365 - IM03-S41 Quantitative coherent Raman scattering microscopies: new tools for the material and life sciences.
Quantitative coherent Raman scattering microscopies: new tools for the material and life sciences.

Unlike optical microscopies that are based on fluorescence detection, Raman-based micro-spectroscopies provide vibrational signatures that themselves represent quantitative measures of the sample’s molecular composition and structures, which for example can be successfully exploited as an intrinsic vibrational contrast of endogenous biomolecular species for label-free tumour diagnostic imaging [1]. In particular, by exploiting the coherent driving and detection of Raman modes in coherent anti-Stokes Raman scattering (CARS) and stimulated Raman scattering (SRS), coherent Raman scattering (CRS) microscopy allows the point-by-point chemical mapping of molecular compounds, which is often difficult to attain by conventional fluorescence and incoherent vibrational microscopy techniques. Here, we will review on two CRS modalities that provide quantitative molecular information [2]: (i) high-speed stimulated Raman loss (SRL) imaging at video-rates and (ii) hyperspectral CARS imaging that provides access to the full wealth of chemical and physical structure information of an a priori unknown molecular sample. We will discuss their underlying principles, their state-of-the-art experimental realizations, and demonstrate exemplifying applications for the label-free and noninvasive 3D visualization of chemical composition as well as of molecular structure properties of (bio)molecular components in heterogeneous and complex materials, ranging from polymers to living cells.

Particular emphasis will be given to the combination of coherent Raman scattering spectroscopy with optical microscopy, which has emerged as a highly sensitive and chemically selective tool for the extraction of quantitative molecular structure information from purely imaginary hyperspectral data cubes of the sample’s complex third-order nonlinear susceptibility, χ(3)(ν,x,y,z), as obtained by fast hyperspectral CARS imaging in conjunction with spectral phase retrieval algorithms. We will introduce a novel concept based on the wavelet prism decomposition and the maximum entropy method (MEM) for the fast and robust reconstruction of the pure vibrational response of the molecular sample inside a sub-femtoliter probe volume in the presence of experimental artefacts, which may obstruct the accurate phase retrieval from the experimental normalized CARS pixel spectra [3]. Furthermore, we will present exemplifying applications (see Fig. 1) for the quantitative 3D mapping of chemical composition in living cells, the intracellular chemical structure analysis of biologically relevant lipids, and the physical 3D structure analysis in polymers.

[1] P. Piredda, M. Berning, P. Boukamp, A. Volkmer, Subcellular Raman Microspectroscopy Imaging of Nucleic Acids and Tryptophan for Distinction of Normal Human Skin Cells and Tumorigenic Keratinocytes, Anal. Chem. 87 (2015) 6778−6785.

[2] A. Volkmer, Chapter 6: Coherent Raman scattering microscopy, in Emerging Biomedical and Pharmaceutical Applications of Raman Spectroscopy Eds. P. Matousek and M. Morris, 2010 (Springer-Verlag) 111-152.

[3] Y. Kan, L. Lensu, G. Hehl, A. Volkmer, E.M. Vartiainen, Wavelet prism decomposition analysis applied to CARS spectroscopy: a tool for accurate and quantitative extraction of resonant vibrational responses, Opt. Express 24 (2016) 11905-11916.

Acknowledgements. I would like to extent a special thanks to my present and past co-workers G.Hehl, S. Gomes da Costa, H. Barbosa de Aguiar, P. Piredda, R. Venkatnarayan, A. Kovalev, and N. Nandakumar at the University of Stuttgart, as well as to my collaborators  E.M. Vartiainen of Lappeenranta University of Technology,  P. Boukamp of the German Cancer Research Center (DKFZ), M. Schmitz of the University Hospital Regensburg, and G. Nikolaeva of the RAS General Physics Institute for their essential contributions to the presented work. Financial support from the Deutsche Forschungsgemeinschaft (DFG: VO 825/1-2, 1-3, 1-4), the European Union (HEALTH-F5-2008-200820 CARS EXPLORER), and from the German Federal Ministry of Education and Research (BMBF) of the projects MEDICARS (13N10776) and MIKROQUANT (13N11074) is gratefully acknowledged.


Andreas VOLKMER (Stuttgart, Germany)
Invited
12:00 - 12:15 #6059 - IM03-OP092 Soft X-ray tomography enhancement by focal series projections.
Soft X-ray tomography enhancement by focal series projections.

Soft X-ray tomography (SXT) is one of the most recent structural biology techniques for quantitative three-dimensional (3D) analysis of whole cells.  When preserved in cryo-conditions, whole cells can be imaged by Fresnel zone plate (FZP) lenses with spatial resolution in the few tens of nanometers. Information from these images can then be combined by tomographic techniques to generate 3D maps of the specimen.  X-ray photon-energies in the so-called water window (between 284 and 543 eV) are especially useful, since high contrast images of cryopreserved whole cells of ~10 microns can be obtained without use of staining agents. However, SXT is far from currently being delivering its promise to its full extend, mostly due to the intrinsic limited depth of field (DOF) of the microscope optical system and to the over simplicity of the standard reconstruction algorithms being used. Indeed, this limited DOF produces images where the contribution of each plane of the specimen is different, leading to three-dimensional (3D) maps where certain parts of the specimen are blurred. We analyze the SXT image formation process in detail, providing a new mathematical theory allowing for the quantitative SXT inversion using focal series projections, images acquired at different defocus (Figure 1). Following these ideas, the SXT microscope at the Spanish synchrotron ALBA has been modified so as to automatically acquire the necessary additional information in a fast and reliable manner. Examples of the use of the new formulation on several biological systems using images acquired at ALBA are provided.

Here we apply our quantitative approach to SXT inversion to the study of an experimental biological system: a rotavirus infected cell tomogram (Figure 2).


Joaquin OTON (MADRID, Spain), Eva PEREIRO, Jose Javier CONESA, Carlos Oscar S. SORZANO, Roberto MARABINI, José L. CARRASCOSA, Jose María CARAZO
12:15 - 12:45 #8636 - IM03-S42 Beating Time and Space resolutions in Ultrasound for disruptive innovations in Medical Imaging.
Beating Time and Space resolutions in Ultrasound for disruptive innovations in Medical Imaging.

In the last fifteen years, the introduction of plane or diverging wave transmissions rather than line by line scanning focused beams has broken the conventional barriers of ultrasound imaging. By using such large field of view transmissions, the frame rate reaches the theoretical limit of physics dictated by the ultrasound speed and an ultrasonic map can be provided typically in tens of micro-seconds (several thousands of frames per second). Interestingly, this leap in frame rate is not only a technological breakthrough but it permits the advent of completely new ultrasound imaging modes, including shear wave elastography, electromechanical wave imaging, ultrafast doppler, ultrafast contrast imaging, and even functional ultrasound imaging of brain activity (fUltrasound) introducing Ultrasound as an emerging full-fledged neuroimaging modality.

At ultrafast frame rates, it becomes possible to track in real time the transient vibrations – known as shear waves – propagating through organs. Such "human body seismology" provides quantitative maps of local tissue stiffness whose added value for diagnosis has been recently demonstrated in many fields of radiology (breast, prostate and liver cancer, cardiovascular imaging, ...). Today, first clinical ultrafast ultrasound scanners are available in the clinical world with such real time imaging of tissue elasticity. This is the first example of an ultrafast Ultrasound approach now widely spread in the clinical medical ultrasound community.

 

For blood flow imaging, ultrafast Doppler permits high-precision characterization of complex vascular and cardiac flows. It also gives ultrasound the ability to detect very subtle blood flow in very small vessels. In the brain, such ultrasensitive Doppler paves the way for fUltrasound (functional ultrasound imaging) of brain activity with unprecedented spatial and temporal resolution compared to fMRI.

Combined with contrast agents, our group demonstrated that Ultrafast Ultrasound Localization could provide a first in vivo and non-invasive imaging modality at microscopic scales deep into organs.

Many of these ultrafast modes should lead to major improvements in ultrasound screening, diagnosis, and therapeutic monitoring.


Mickael TANTER (PARIS CEDEX 5)
Invited
Salle Prestige Gratte Ciel

"Friday 02 September"

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MS0-III
10:30 - 12:45

MS0: Nanoparticles: from synthesis to applications
SLOT III

Chairpersons: José CALVINO (Chairperson, Cadiz, Spain), Goran DRAZIC (Head of microscopy group) (Chairperson, Ljubljana, Slovenia), Christian RICOLLEAU (Professor) (Chairperson, C'Nano IdF, Paris, France)
10:30 - 10:45 #5085 - MS00-OP180 Quantification of SiO2 nanoparticle sedimentation on A549 cells.
Quantification of SiO2 nanoparticle sedimentation on A549 cells.

In recent years many studies were published on toxicological effects of nanoparticles (NPs) on human tissue. Many dose-response studies rely on in vitro assays, in which cultured cells are exposed to a suspension of cell-culture medium and NPs. Limbach et al. [1] stated, that the sedimentation process of NPs in this setup is more complex than in the case of microparticles (MPs). While sedimentation of NPs is primarily driven by diffusion, it is mainly gravitational force, which influences MPs. To compare and quantify the sedimentation of particles of both scales, sedimentation studies and simulations with SiO2 particles were performed in this work. Scanning electron microscopy (SEM) was applied to measure the direct cellular dose, i.e., the sedimented areal densities of particles (AD) on the cells, as a more appropriate definition of dose according to Teeguarden et al. [2]. Simulations are based on ISDD, a computational model by Hinderliter et al. [3].

The samples were prepared as follows: A549 lung cancer cells were seeded onto indium-tin-oxide coated glass substrates in culture plates containing Dulbecco's Modified Eagle's Medium supplemented with fetal calf serum (FCS). After adhering overnight, the cells were incubated with SiO2 particles (from 70 nm up to 500 nm diameter) in cell culture medium for 1 and 4 hours. Using ISDD and assuming, that sedimented particles are homogeneously distributed, targeted ADs were calculated according to predefined incubation concentrations. After fixation with paraformaldehyde the cells were dehydrated with graded ethanol series, dried by critical point drying and investigated in a FEI Quanta 650 SEM. Particles were imaged with secondary electrons (SE) in intercellular regions between cells. Backscattered electron (BSE) images were taken to detect particles on cells. To increase the BSE contrast, a retarding bias was applied to the sample stage.

Fig. 1a shows a representative SE image of an intercellular region with 200 nm SiO2 particles after 1 h incubation. The particles appear homogeneously distributed. Fig. 1b depicts a cell surface of the same specimen with a substantially smaller AD (0.15 NP/µm² compared to 0.84 NP/µm² in Fig. 1a) and an inhomogeneous NP distribution. A smaller cellular AD is also observed for all other particles sizes and incubation times. This is shown in Fig. 2a, where measured cellular and intercellular ADs for each specimen are compared. In Fig. 2b, the simulated AD is plotted against the measured intercellular AD for all samples. Calculated and measured ADs agree well within the error bars, which can be considered as a verification of the ISDD model. However, the cellular ADs are significantly lower indicating that another effect must be taken into account. Cellular uptake can be ruled out as an explanation, because focused-ion-beam sectioning of whole cells did not show a high particle density in cells.

Fluorescence microscopy (FM) investigations with rhodamine labelled SiO2 NPs (Ø = 70 nm) and A549 cells qualitatively confirm the differences between cellular and intercellular ADs observed by SEM (Fig. 3a). The red fluorescence is much stronger in intercellular regions than on cells, however the signals stem from small agglomerates. Dynamic light scattering shows, that this agglomeration is caused by FCS coating of NPs applied before incubation. To study the impact of FCS in more detail, further in vitro experiments with and without FCS precoatings of NPs and/or substrates were performed. Preliminary results indicate, that protein coatings induce an attractive interaction between NPs with their protein corona and surface proteins. Since FM is unable to resolve single NPs, SEM is best suited for confirmation.

SEM is convenient to quantitatively determine ADs of NPs and reveals distinct differences between cellular and intercellular ADs. Our results highlight a major problem of bulk investigation methods relying on lysates, because intercellular and cellular regions cannot be distinguished.

References

[1] L.K. Limbach, et al., Environ. Sci. Technol., 39 (2005), pp. 9370–9376.

[2] J.G. Teeguarden, et al., Toxicol. Sci., 95 (2007), pp. 300–312.

[3] P.M. Hinderliter, et al., Part. Fibre. Toxicol., 7 (2010), p. 36.

We acknowledge the support of the BIF graduate school funded by the Helmholtz Association.


Thomas KOWOLL (Karlsruhe, Germany), Susanne FRITSCH-DECKER, Regina FERTIG, Erich MUELLER, Carsten WEISS, Dagmar GERTHSEN
10:45 - 11:00 #5767 - MS00-OP181 Evaluation of Electron Microscopy Techniques for the Purpose of Classification of Nanomaterials.
Evaluation of Electron Microscopy Techniques for the Purpose of Classification of Nanomaterials.

One current and much-debated topic in the characterization of nanomaterials (NM) is the implementation of the recently introduced recommendation on a definition of a nanomaterial by the European Commission [1]. According to this definition [1], a material is a NM when for 50% or more of the particles in the number size distribution, one or more external dimensions is in the size range 1 nm-100 nm. The European NanoDefine project [2] was set up to develop and validate a robust, readily implementable and cost-effective measurement approach to obtain a quantitative particle size distribution and to distinguish between NMs and non-NMs according to the definition [1].

All currently available sizing techniques able to address nanoparticles were systematically evaluated. It was demonstrated that particle sizing techniques like: analytical centrifugation, particle tracking analysis, single-particle inductively coupled plasma mass-spectrometry, differential electrical mobility analysis, dynamic light scattering, small angle X-ray scattering, ultrasonic attenuation spectrometry, but also gas adsorption analysis based on the BET-method can be applied for a screening classification. However, the quality of the results depends on the individual material to be classified. For well-dispersed, nearly spherical (nano)particles most of the sizing techniques can be applied in a quick and reliable way. In contrast, the classification of most real-world materials is a challenging task, mainly due to non-spherical particle shape, large polydispersity or strong agglomeration/aggregation of the particles. In the present study it was shown that these issues can be resolved in most cases by electron microscopy as a confirmatory classification technique [3-6].

Electron microscopy techniques such as TEM, STEM, SEM or TSEM (transmission in SEM) are capable of assessing the size of individual nanoparticles accurately (see Figures 1 and 2). Nevertheless the challenging aspect is sample preparation from powder or liquid form on the substrate, so that a homogeneous distribution of well-separated (deagglomerated) particles is attained. The systematic study in this work shows examples where the extraction of the critical, smallest particle dimension - as the decisive particle parameter for the classification as a NM - is possible by analysing the sample after its simple, dry preparation. The consequences of additional typical issues like loss of information due to screening of smaller particles by larger ones or the (in)ability to access the constituent particles in aggregates [5] are discussed.

By means of practical examples the inherent statistical evaluation of the particle size is highlighted together with all its pitfalls such as setting of a suitable threshold for delimitation of the particle boundaries in the electron micrograph or consideration of systematic (bias) deviations from the true particle size because of evaluation via surface sensitive secondary electron detectors, e.g. In-Lens.

[1] European Commission, Commission Recommendation of 18 October 2011 on the definition of nanomaterial (2011/696/EU). Official J. Europ. Union 54 (2011) p. 38.

[2] www.NanoDefine.eu

[3] F Babick et al, submitted.

[4] K Yamamoto, Microsc. Microanal. 21 (Suppl 3) (2015) p. 2399.

[5] P-J de Temmerman et al, Powder Technol. 261 (2014) p. 191.

[6] P Müller et al, Microsc. Microanal. 21 (Suppl 3) (2015), p. 2403.

[7] The research leading to these results has received funding from the European Union’s Seventh

Framework Programme (FP7/2007-2013) under grant agreement n° 604347-2. (www.nanodefine.eu).


Johannes MIELKE, Frank BABICK, Toni UUSIMÄKI, Philipp MÜLLER (Ludwigshafen am Rhein, Germany), Eveline VERLEYSEN, Vasile-Dan HODOROABA
11:00 - 11:15 #5959 - MS00-OP184 Playing around with shape and composition of nanoparticles for various applications.
Playing around with shape and composition of nanoparticles for various applications.

Nowadays, nanoparticles with sizes between 2 to 50 nm become more and more popular, because they can be applied in various fields such as materials science, chemistry, catalysis, medicine or biology. In particular nanoparticles with fancy shapes gain a lot of attention, also because of the low-cost synthesis methods. This study is focused on several types of catalytic nanoparticles (NPs), silver nanoparticles synthesized using green chemistry methods and in particular on their morphological and chemical analysis using HR(TEM). Three-dimensional (3D) catalysts [1] being promising for application in fuel cells were studied. These nanoparticles have a dodecahedron shape with Pt skin at the edges and a Ni core, Figure 1(a). When etching away the core, the remaining empty Pt frame offers a much larger active surface compared to spherical nanoparticles. The morphology of these 3D PtNi particles strongly depends on the synthesis parameters allowing fabricating dodecahedrons, Figure 1(a), core-shell or even dendritic structures, Figure 1(b).

SnO2 nanoparticles are excellent supports for noble metal NPs, as their combination exhibits good catalytic activity towards ethanol oxidation reaction [2]. Various synthesis routes including polyol and microwave assisted methods allowed producing different SnO2 NPs, Figure 2(a). The break of the C=C bond in the ethanol molecule occurs at the interface between PtRh and SnO2 particles, Figure 2(b). Therefore their physical contact is imperative for the effectiveness of the catalyst. Structural aspects and chemical analysis by TEM characterization techniques of the PtRh/SnO2/C catalysts were analyzed.

Green synthesis method using camomile extract was applied to synthesize silver nanoparticles in order to tune their antibacterial properties merging the synergistic effect of camomile and Ag [3]. Scanning transmission electron microscopy (STEM) revealed that camomile extract (CE) consisted of porous globular nanometer sized structures, which were a perfect support for Ag nanoparticles, Figure 3(a). The Ag nanoparticles synthesized with the camomile extract (AgNPs/CE) of 7 nm average size, were uniformly distributed on the CE support, Figure 3(b). The EDX chemical analysis showed that camomile terpenoids, Figure 3(c) act as a capping and reducing agent being adsorbed on the surface of AgNPs/CE, Figure 3(d), enabling their reduction from Ag+ and preventing them from agglomeration. Antibacterial tests using four bacteria strains, showed that the AgNPs/CE performed five times better compared to CE and AgNPs/G samples, reducing totally all the bacteria in 2 hours, Figure 4.

 

References

  1. C. Chen, Y. Kang, Z.Huo, Z. Zhu, W. Huang, H.L. Xin, J.D. Snyder, D. Li, J.A. Herron, M. Mavrikakis, M. Chi, K.L. More, Y. Li, N.M. Markovic, G.A. Somorjai, P. Yang, V.R. Stamenkovic, Science 343 (2014) 1339-1343.
  1. A. Kowal, M. Li, M. Shao, K. Sasaki, M.B. Vukmirovic, J. Zhang, N.S. Marinkovic, P. Liu, A.I. Frenkel and R.R. Adzic, Nature Materials 9 (2009) 325-330.
  2. M. Parlinska-Wojtan, M. Kus-Liskiewicz, J. Depciuch, and O. Sadik submitted to Bioprocess and Biosystems Engineering.

Acknowledgements

We thank the Center for Innovation and Transfer of Natural Sciences and Engineering Knowledge of the University of Rzeszow and the Division of Materials Processing Technology, Management and Computer Techniques in Materials Science, Institute of Engineering Materials and Biomaterials, of the Silesian University of Technology in Poland for using the TEM instruments. Financial support from the Polish National Science Centre (NCN), grant UMO-2014/13/B/ST5/04497 is acknowledged.


Magdalena PARLINSKA-WOJTAN (Krakow, Poland), Grzegorz GRUZEL, Elzbieta ROGA, Joanna DEPCIUCH, Andrzej KOWAL
11:15 - 11:30 #5988 - MS00-OP185 Imaging interactions of iron oxide nanoparticles with organic ligands and the biological environment.
Imaging interactions of iron oxide nanoparticles with organic ligands and the biological environment.

Applications of nanoparticles for chemistry, biochemistry and biomedicine require a detailed understanding of the nature of the nanoparticles and of their surface interactions with both functionalizing organic groups and biological environments. Here we present ongoing studies of the nature and surface interactions of iron oxide nanoparticles (IONPs) intended for magnetic resonance imaging detection and hyperthermia treatment.

The IONPs are synthesized by a novel low temperature aqueous route devoid of surfactant chemistry or capping agents. In addition to routine characterization of the IONPs by TEM, XRD, FTIR, XPS, DLS, and magnetic characterization, we use aberration-corrected high resolution TEM to monitor their structural quality. Because of an observed sensitivity to the electron beam at a 200 kV high tension (HT), we use a HT of 80 kV, with effects of chromatic aberration reduced by implementing a monochromatic “rainbow” illumination in the incident beam [1]. This imaging allows observations of minute changes in surface structural quality. Initially formed particles are rounded, showing signs of slight structural disorder in the first atomic layers at the surface (Fig. 1). In contrast, aged particles have atomically sharp structural ordering at surfaces which are markedly more faceted (Fig. 2). No beam damage effects are observed other than the hopping of atoms on surface ledge sites.

For bioengineering, it is critical to understand how molecules and proteins interact with these IONPs. Beginning with the former, the particles are functionalized with folic acid, the molecule most often used for "nonspecific" targeting. Using the same monochromated, Cs-corrected imaging conditions as above, in Figure 3 we demonstrate the ability to image ligand attachment and surface coverage, similarly to Lee et al. [2]. The folic acid molecules show phase contrast with definition down to about 2 Å; this phase contrast will be compared to simulations for better interpretability. Ligands are observed to form two or three strand thick shells around the surfaces of the IONPs. Using fast frame acquisition, very specific effects of electron irradiation are recorded: the molecules wriggle under the beam, often with one end appearing to detach and reattach to the surface of the IONP. This behavior is explained in terms of relative bonding potentials for either the amino acid or the carboxylic ends of the molecules absorbed to the IONP surfaces.

Once the IONPs are injected into a biological environment it is known that any such functionalization is rapidly replaced by a surface coverage of proteins – the protein corona – which then dictates how the IONPs interact with this environment [3]. To understand this biomedically-important process, for the first time, we obtain in vivo conditions which create a protein corona whose nature mimics that observed for in vitro studies. As well as again using phase contrast imaging of dry samples, we also study the morphology of this corona by simple negative-staining to create contrast between the protein and the carbon support film. Contrary to the commonly held view that the proteins make a uniform encapsulating layer around nanoparticles, their coverage is distinctly patchy (Fig. 4); consistent with the attaching proteins having widely varying sizes. As a next step HAADF STEM tomography will be used to map the 3D morphology of this non-uniform coronal coverage.

With research ongoing on these IONPs for "magnetotheranostics", the other main perspective of this work is to pursue imaging of such interactions in representative liquid environments, particularly using high resolution cryo-TEM imaging to monitor better the nature of organic functionalization in an aqueous environment.

 

References and Acknowledgements

[1] P.C. Tiemeijer et al., Ultramicrosc. 114 (2012) 72–81.

[2] Z. Lee et al., Nano Lett. 9 (2009) 3365–3369.

[3] M.P. Monopoli et al., Nature Nano. 7 (2012) 779–786.

The authors acknowledge funding from Nano-Tera.ch, project Magnetotheranostics number 530 627.


Duncan ALEXANDER (Lausanne, Switzerland), Débora BONVIN, Ulrich ASCHAUER, Heinrich HOFMANN, Marijana MIONIC EBERSOLD
11:30 - 11:45 #6730 - MS00-OP195 Evidence for the dissolution of molybdenum during tribocorrosion of CoCrMo alloy in the presence of serum proteins.
Evidence for the dissolution of molybdenum during tribocorrosion of CoCrMo alloy in the presence of serum proteins.

CoCrMo Metal on Metal (MoM) hip implants were designed to be durable, targeting a better quality of life for young, active patients. Current evidence suggests that such implants can release wear particles and metal ions due to a bio-tribocorrosion process [1,2]. This involves both corrosion of the implant surface itself, which is stimulated by the wear process removing a chromium-rich passivating film, and also mechanical wear of the surface to produce nanoparticulate wear debris that can be spread by lymphatic circulation and subsequently corrode. Both processes can therefore give rise to the release of metal ions which may have an inflammatory or toxic effect on cells and tissues, notably because certain metal ions can complex with proteins and disable the primary function.

This study focuses on the synthesis and characterization of CoCrMo nanoparticles, which mimic metal-on-metal (MoM) wear debris from hip implants. We have used a hitherto unexplored approach of mechanochemical milling to produce a large amount of CoCrMo mimetic wear debris over short time scales [3]. Using TEM, the nanoparticles produced were found to be similar in size, shape and composition to wear debris from CoCrMo hip implants produced both in-vivo and using hip simulators. An efficient separation of nanoparticles from solution prior to free ion concentration analysis by inductively coupled plasma mass spectrometry (ICP-MS) was developed using centrifugation combined with ultrafiltration (2 kDa ultrafilters; Figure 1). This revised preparation method has allowed the identification of the dissolution of specific alloy elements both in hip simulator lubricant systems and in different biological media and pH environments during both dynamic tribocorrosion studies (using milling) and also during static corrosion (Figure 2). The results indicate a much lower dissolution of cobalt than previously reported.  We also identified a significant fraction of Mo ions in solution that could be linked to the preferential binding of Mo by bovine serum albumin (BSA) proteins identified by FTIR and TEM [4; Figure 3]. Electrochemical corrosion tests in the presence of BSA confirm that the proteins play an important role in Mo dissolution from CoCrMo. We suggest that the interaction of Mo-rich surfaces with amide groups in serum proteins and the possible formation of metal carbonyl complexes are important because both can modify biological molecules, potentially altering the function.

In summary, the role of Mo as well as Co ions should be accounted for in the tribocorrosion of CoCrMo implant alloys, particularly in terms of inflammatory and toxicological responses.

 

[1] D. Cohen (2012) How safe are metal-on-metal hip implants?, Br. Med. J., 344, e1410–e1410.

[2] Y. Yan, A. Neville, D. Dowson, S. Williams, J. Fisher (2009) Effect of metallic nanoparticles on the biotribocorrosion behaviour of Metal-on-Metal hip prostheses, Wear, 267, 683–688.

[3] T.A. Simoes, A.E. Goode, A.E. Porter, M.P. Ryan, S.J. Milne, A.P. Brown, et al. (2014) Microstructural characterization of low and high carbon CoCrMo alloy nanoparticles produced by mechanical milling. J. Phys. Conf. Ser., 522, 012059.

[4]T.A. Simoes, A.P. Brown, S.J. Milne, R.M.D. Brydson (2015) Bovine Serum Albumin binding to CoCrMo nanoparticles and the influence on dissolution. J. Phys. Conf. Ser., 644, 012039.


Thiago SIMOES, Michael BRYANT, Andy BROWN, Steve MILNE, Mary RYAN, Angela GOODE, Alexandra PORTER, Anne NEVILLE, Rik BRYDSON (Leeds, United Kingdom)
11:45 - 12:00 #6517 - MS00-OP191 Chemical arrangement and surface effects in CoAu nanoparticles.
Chemical arrangement and surface effects in CoAu nanoparticles.

Nanoparticles associating a noble metal and a ferromagnetic metal are appealing from a magneto-plasmonics point of view, in addition to the problematics of magnetic anisotropy tailoring (interface anisotropy, phase transformation) and of nanoalloy original geometries. Because Co and Au are immiscible in the bulk phase, and since fcc cobalt and gold have highly different cell parameters, chemically separated structures (core-shell type) are expected for nanoparticles.

We have studied CoAu cluster assemblies, with a diameter between 3 and 10 nm, prepared by low energy cluster beam deposition (LECBD) where nanoparticles are formed in out-of-equilibrium conditions by laser vaporization, then deposited on a substrate under ultrahigh vacuum conditions and protected by a capping layer (amorphous carbon, to avoid oxidation). The nanoparticles’ structure and chemical arrangement (see figures) have been investigated by HRTEM, STEM-HAADF and STEM-EELS before and after annealing (2h around 500°C). A mapping of the low energy electronic excitations has also been performed by STEM-EELS, which is a challenge on such small nano-objects.

As prepared particles are found to be inhomogeneous (as deduced from EELS measurements), with interatomic distances always corresponding to pure gold, and they appear to be surrounded by a shell of lighter HAADF intensity which rapidly transforms upon electron beam exposure in STEM. After annealing, a phase separation is observed and CoAu nanoparticles adopt a core-shell structure where, as observed by HRTEM (with a clearly visible difference of inter-plane distances between Co and Au regions), STEM-HAADF and STEM-EELS, an off-centered cobalt core is surrounded by a gold shell (see figure). For both as-prepared and annealed nanoparticles, the Co is not oxidized thanks to the efficient protection of the thin carbon layer. Using low-loss STEM-EELS mapping, we are able to observe some surface contributions, which may reflect collective electronic resonances (surface plasmons), with significant differences between as-prepared and annealed CoAu nanoparticles (in particular, an intense peak is detected on the gold-rich regions, around 6 eV).

These results shed light on the atomic-scale behavior of the Co-Au nanoalloy, here in an amorphous carbon matrix, which will be compared to other dielectric matrices, and will help us to understand the original magnetic properties of these hybrid nanoparticles. 


Florent TOURNUS (VILLEURBANNE CEDEX), Ophelliam LOISELET, Kazuhisa SATO, Katia MARCH, Odile STEPHAN
12:00 - 12:15 #6318 - MS00-OP189 Revealing the symmetry breaking, growth and surface properties of gold nanorods.
Revealing the symmetry breaking, growth and surface properties of gold nanorods.

The unique properties of nanoparticle structures are directly determined by particle composition, size, shape and surface faceting; each offering a tuneable parameter with which one can tailor properties to a given application. Advances in wet-chemistry techniques now enable the synthesis of nanoparticles with shape anisotropy and novel surface faceting that exhibit exciting optical and catalytic properties.  Here, we develop and apply quantitative scanning transmission electron microscopy methods to observe key structural changes that enable anisotropic growth; characterise the nanorod faceting in three dimensions; and probe the relative surface “energies” of both high and low index facets.

Gold nanorods are an archetypal system with which to study anisotropic nanoparticle growth.  Yet despite intense research it remains unclear how or why a single crystal seed particle, with a cubic lattice, grows preferentially in two of six nominally symmetry-equivalent directions. Observations at various stages of gold nanorod growth reveal the onset of asymmetry occurs only in single crystal seed particles that have reached diameters between 4 and 6 nm.  In this size range only, small, asymmetric truncating surfaces with an open atomic structure become apparent, and in the presence of Ag+ ions are stabilised, becoming side facets in the embryonic nanorod structure [1,2].   These results provide the first direct observation of the structural changes that break the symmetry of the seed particle and provide key insights into the mechanism of anisotropic growth.

The various facets exhibited by the nanoparticle [3] and their relative surface energies are a crucial driver of shape control whilst also directly determining how the resulting particle will interact with its environment.  We apply a quantitative STEM technique [4] to count the number of atoms in each atomic column as identified in STEM images of a single crystal gold nanorod orientated in two different zone axes.  Using this method we are able to determine the morphology and facet crystallography of the nanorod, finding it is comprised of both high {0 1 1+√2} and low {110}, {100} index side-facets, each of comparable size and shape.  Furthermore, by applying this method at successive time intervals and comparing the images it is possible to quantify atomic movement on the surface and therefore determine the relative stability of different crystallographic facets and the overall stability of the nanoparticle shape [5].  These results provide important information on the effect of surfactants on the relative surface energies of high and low index facets, and shed new light on the growth kinetics of Au nanorods.

 

Acknowledgements: This work was supported by the Australian Research Council (ARC) grants DP120101573, DP160104679 and LE0454166

  1. M. J. Walsh, S. J. Barrow, W. Tong, A. M. Funston and J. Etheridge. ACS Nano, 2015. 9(1). 715-724.
  2. W.Tong, M. J. Walsh, P. Mulvaney, J. Etheridge and A.M. Funston.  In preparation 2016
  3. H. Katz-Boon, C. J. Rossouw, M. Weyland, A.M. Funston, P. Mulvaney and J. Etheridge. Nano Letters, 2010. 11(1): p. 273-278
  4. C. Dwyer, C. Maunders, C. L. Zheng, M. Weyland. P. C. Tiejmeijer and J. Etheridge.  Appl. Phys. Lett. 2012, 100, 191915
  5. H. Katz-Boon, M. J. Walsh, C. Dwyer, P. Mulvaney, A.M. Funston and J. Etheridge. Nano Letters. 2015, 15 (3), 1635

Joanne ETHERIDGE (Melbourne, Australia), Michael J. WALSH, Hadas KATZ-BOON, Wenming TONG, Christian DWYER, Alison, M. FUNSTON
12:15 - 12:30 #6042 - MS00-OP186 Synthesis and characterization of bimetallic nanorods.
Synthesis and characterization of bimetallic nanorods.

Anisotropic metal nanoparticles (NPs), and especially nanorods (NRs) exhibit interesting optical properties, which arise from their localized surface plasmon. Unlike nanospheres, gold NRs have a longitudinal surface plasmon resonance (LSPR) in the visible or near-infrared range of the spectrum. By altering e.g. the shape or the dimensions (aspect ratio) of the NRs, the LSPR can be tuned, which makes them interesting materials for a broad range of light based applications, such as photocatalysis [1], data storage [2] and photothermal applications. The optical properties of gold nanoparticles can be extended even further by introducing a second metal. However, synthesizing bimetallic NRs with a good control over the metal composition and distribution while retaining the rod shape is challenging.

In this study we present bimetallic systems composed of gold-based NRs coated with a protective mesoporous silica layer. We show that it is possible to synthesize bimetallic core-shell nanorods within a mesoporous silica shell, by etching away part of the gold and overgrowing the remaining Au-core with a second metal while precisely controlling the core-size, metal-shell thickness and thus the metal-to-metal ratio [3]. Depending on the choice of metal, different growth behavior was observed. Overgrowth with Ag resulted in a smooth shell whereas the Pt and Pd metal shells had a rough morphology (Figure 1). The different types of bimetallic NRs were characterized in detail with advanced electron microscopy techniques such as Energy-dispersive X-ray spectroscopy (EDX), high-angle annular dark-field scanning transmission electron microscopy (HAADF-STEM) and electron tomography. Subsequently, we used these silica coated bimetallic core-shell structured rods as a starting material to make fully alloyed NRs, whereby the two metals were mixed via thermal treatment without loss of anisotropy [4]. The alloying process was followed in detail with in-situ HAADF-STEM heating and EDX measurements by making use of a special heating holder (Figure 2).

[1]           Suljo Linic et al., Nat. Mater. 14, (2015), 567-576. 
[2]           P. Zijlstra et al., Nature, 459, (2009), 410–413
[3]           T.S. Deng, J.E.S. van der Hoeven, A. Yalcin, H.W. Zandbergen, M.A. van Huis, A. van Blaaderen, Chem. Mater. 27, (2015), 7196-7203. 
[4]           W.A. Albrecht and J.E.S. van der Hoeven, T. Deng, P.E. de Jongh, A. van Blaaderen., submitted


Jessi VAN DER HOEVEN (Utrecht, The Netherlands), Wiebke ALBRECHT, Tiansong DENG, Petra DE JONGH, Alfons VAN BLAADEREN
12:30 - 12:45 #6930 - MS00-OP198 Ceria ro(a)d to cubes: a combined experiment and MD simulation study.
Ceria ro(a)d to cubes: a combined experiment and MD simulation study.

Since the first nanoparticle syntheses, research has focused on producing various nano-catalysts of different compositions and uses. Over the years, the importance of their shape, hence their exposed facets, grew in interest. The differences between facets, may sometimes remain unclear and controversial, but more and more effects in terms of reactivity and/or selectivity are shown in recent works. In this framework, rod and cubic-shaped cerium oxide nanoparticles were synthesized using a hydrothermal microwave-assisted process. Systematic TEM imaging and analysis reveal that rods are progressively replaced by cubes with increasing synthesis time (with fixed temperature and pH). Besides, a more careful look at these cubic-shaped particles highlights a slight anisotropy - depending on the zone axis they are imaged along - leading us to reconsider their nucleation and growth mechanisms.

These processes were first studied using radiation damages induced in ceria rods’ complex microstructures under focussed electron beam. Their periodical packing composed of single crystals aligned along a common low-index axis were firstly reduced and new nanometer-sized domains were formed with different (micro)structures. These zones tend to split from the initial rod in case of severe irradiation conditions and may, in-fine, lead to cuboidal particles via a solid-state transformation process.

As-synthesized cubes were then characterized by means of high resolution TEM coupled with molecular dynamics simulations. As expected, they exhibit single crystalline structure and {001} lateral facets are enclosed by {111} sharp corners and {011} average flat edges made of alternating {111} steps. More surprisingly, whatever the particle size might be, projected edges and corners width remains constant and corresponds to the diagonal of a four by four square formed by {002} planes. By keeping constant this truncation, surface plane ratios can be tuned only by adjusting ceria particles synthesis conditions.

Further on, when submitted to reducing conditions, both simulations and experiments tend to show a partially reversible flattening of the {011} edges combined with the observation of superlattice reflections and Moiré fringes. This indicates that oxygen anions have been removed from the fluorine CeO2 structure inducing an ordered oxygen vacancies lattice. Finally, oxygen vacancies movement into the ceria network will be discussed.


Uli CASTANET (PESSAC), Francesco CADDEO, Dean C. SAYLE, Jerome MAJIMEL
Salle Gratte Ciel 1&2

"Friday 02 September"

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MS8-I
10:30 - 12:45

MS8 Geology and mineralogy, cultural heritage and archeology
SLOT I

Chairpersons: Trevor ALMEIDA (Chairperson, Glasgow, United Kingdom), Nicolas MENGUY (Professeur) (Chairperson, PARIS, France)
10:30 - 11:00 #8622 - MS08-S87 Magnetic microscopy of metallic meteorites: probing the magnetic state of the early solar system.
Magnetic microscopy of metallic meteorites: probing the magnetic state of the early solar system.

Meteorites are fragments of asteroids. They represent the oldest and most primitive materials in the solar system – rubble left over after the planets formed over four and half billion years ago. Information about the magnetic state of asteroids during the early solar system can, in principle, be recovered from meteorites. The paleomagnetic potential of meteoritic metal has been overlooked in the past, due to the fact that they are mostly comprised of kamacite (a soft magnet that makes a notoriously poor paleomagnetic recorder). Recent research, however, has uncovered regions buried within the Widmanstätten pattern that can capture reliable records of magnetic activity on asteroid bodies1. This discovery, combined with the advent of high-resolution magnetic imaging methods, has allowed us to decipher the magnetic signals encoded within meteoritic metal for the very first time2,3.

Our attention has focussed on the ‘cloudy zone’: a region just a few microns wide lying next to the kamacite lamellae that define the Widmanstätten pattern. The cloudy zone consists of a tightly packed array of nanoscale islands of tetrataenite, an ordered Fe0.5Ni0.5 phase that forms by the diffusive rearrangement of Fe and Ni atoms into alternating layers during slow cooling. The high intrinsic coercivity (> 2 Tesla) of tetrataenite makes it an excellent permanent magnet. Each island is ~100 nm or less in diameter, and is uniformly magnetised in one of six crystallographically defined directions. The proportions of islands magnetised in each direction are biased by interaction with the magnetic field of the asteroid. This bias is detected using X-ray photo-emission electron microscopy (XPEEM). Magnetic contrast is obtained using circularly polarised X-rays incident at a glancing angle to the surface, exploiting the resulting X-ray magnetic circular dichroism (XMCD) signal to reveal intricate nanoscale domains within the cloudy zone (Fig. 1). Combined with extensive image simulations, quantitative information about the magnetic state of the asteroid can be extracted from the data.

In this talk I will present an overview of nanopaleomagnetic XPEEM studies we have performed on metal from a range of meteorites that have experienced very different cooling rates on their parent bodies, from the most slowly cooled (<< 1 K/Myr) mesosiderites to the most rapidly cooled (>> 1000 K/Myr) IVA. The cooling rate is shown to have a dramatic effect on the length scale of the developing microstructures, with correspondingly dramatic effects on the magnetic properties. In the most extreme cases, six zones of distinct magnetic response are resolved over a 5 µm field-of-view, each zone defined by the properties of the underlying nanostructures. Combined with new insights into the chemical and crystallographic nature of the cloudy zone, as revealed by EDX tomography, atom probe tomography and scanning precession electron diffraction, we are discovering ever more about the underlying physics of these unique materials, and beginning to piece together the processes that helped shape some of the earliest objects in the solar system.

 

References:

1 J.F. Bryson, N.S. Church, T. Kasama, and R. Harrison, Earth Planet. Sci. Lett. 388, 237 (2014).

2 J.F. Bryson, J. Herrero-Albillos, F. Kronast, M. Ghidini, S.A. Redfern, G. Laan, and R. Harrison, Earth Planet. Sci. Lett. 396, 125 (2014).

3 C.I.O. Nichols, J.F.J. Bryson, J. Herrero-Albillos, F. Kronast, F. Nimmo, and R.J. Harrison, Earth Planet. Sci. Lett. 441, 103 (2016).

 

Acknowledgements:

R.J.H. would like to acknowledge funding under ERC Advance grant 320750- Nanopaleomagnetism. P.A.M. would also like to acknowledge funding under ERC Advance grant 291522 - 3DIMAGE.


Richard HARRISON (Cambridgeshire, United Kingdom), James BRYSON, Claire NICHOLS, Julia HERRERO-ALBILLOS, Florian KRONAST, Josh EINSLE, Paul MIDGLEY
Invited
11:00 - 11:15 #5814 - MS08-OP308 Mg-calcite formation in a freshwater environment (Lake Balaton): nucleation, growth, structure and composition.
Mg-calcite formation in a freshwater environment (Lake Balaton): nucleation, growth, structure and composition.

Lake Balaton can be regarded as a large scientific laboratory in which many interesting aspects of carbonate mineral formation can be studied, with relevance to the general understanding of nanoscale processes that govern crystal nucleation and growth in a natural aqueous system. The lake is extremely shallow for its size (on average 3.5 m deep and 70 km long), its calcareous water Mg-rich (with a Mg/Ca molar ratio ranging from (~1 to 4), typically displaying a chemical gradient along the W–E long axis of the lake, as a result of the main inlet and outlet being located at opposite ends. The bottom sediment is a soft grey mud, with 30 to 80% of it consisting of Mg-calcite, a mineral that precipitates from the water (Fig. 1a). We used SEM, TEM and STEM techniques to characterize this Mg-calcite, in order to obtain a better understanding of its formation and role in the ecosystem.

 

Freshwater calcite is known to nucleate on biological material, primarily on picoplankton (cyanobacterial) cells. In contrast, the Mg-calcite in Lake Balaton is closely associated with few-unit-cell-thick stacks of clay (smectite) layers (Figs. 1b and c), suggesting that it either nucleated on smectite or adsorbed to the clay flakes. Our laboratory experiments confirm that adding smectite to filtered lakewater dramatically induces Mg-calcite precipitation; thus, the nm-scale clay fragments likely serve as nucleation sites. Since the lake sediments are stirred up by even gentle winds, most of the time smectite particles are readily available for Mg-calcite nucleation. A special case occurs when the lake is frozen and even the clay particles can settle: only bacterial cells are available as nucleation sites (Fig. 2a), and encrustation of cells results in tube-shaped, porous Mg-calcite particles (Fig. 2b).

 

Mg-calcite that formed under „normal” conditions (i.e., nucleated on smectite) typically occurs in the shape of elongated, several μm-large, aggregate-looking particles (Fig. 2c). Even though they appear to be composed of many smaller crystals, SAED patterns suggest that the particles are perfect single crystals (Fig. 2d). The single crystalline nature of the particles probably results from a dissolution/reprecipitation process that preserves the original shapes of particles.

 

The Mg content of the calcite varies from 2 to 20 mol%, depending on the water budget (dilution) and geographical location in the lake. Mg-calcite that nucleated on bacterial cells is highly enriched in Mg; according to SAED patterns, Mg and Ca ions do not order in the structure. Our results provide new information on freshwater calcite nucleation and on the biologically assisted precipitation of high-magnesian calcite.

 

 

Acknowledgements: This research was supported by NKFIH grant no. K116732. Access to electron microscopes at Forschungszentrum Jülich was provided by the EU 7th Framework Programme ESTEEM2. 


Mihály PÓSFAI (Veszprém, Hungary), Ilona NYIRŐ-KÓSA, Ágnes ROSTÁSI, Éva BERECZK-TOMPA, Ildikó CORA, Maja KOBLAR, András KOVÁCS
11:15 - 11:30 #6002 - MS08-OP309 Interface migration mechanism on Corundum/Spinel/Periclase: atomic study via aberration-corrected STEM.
Interface migration mechanism on Corundum/Spinel/Periclase: atomic study via aberration-corrected STEM.

 In nature it is common that a new mineral grows between two minerals due to the inter-diffusion of elements. Understanding its growth mechanism is critical for reconstructing conditions and rates of mineral formation. The growth of the new phase is controlled by the coupling of interface reaction and long-range diffusion. To understand the interface reaction, it is essential to figure out the atomic structure of the interfaces.

 In this research, spinel (MgAl2O4, Spl) has been grown between periclase (MgO, Per) and corundum (Al2O3, Crn) via pulsed laser deposition [1] and uniaxial stress methods [2] for studying the early and late growth stages, respectively. Electron Backscatter Diffraction (EBSD) has been used to study the interfacial orientation relationship on both Per/Spl and Spl/Crn reaction interfaces. The EBSD mapping (Fig.1) shows that the Spl layer splits into two different sections: a thinner part in topotaxial orientation relationship with Per, and a thicker part topotaxial with Crn. Then Focused Ion Beam (FIB) was used to lift out the interface areas with representative orientation relationships, and the atomic structure studied by aberration-corrected Scanning Transmission Electron Microscopy (STEM).

 The atomic resolution images of the Spl/Crn interface show that the interface is located where the (001) lattice plane of Crn coincides the (111) lattice plane of Spl, which are both occupied by Al atoms exclusively. In another side, the Per/Spl interface shows a periodic configuration (Fig.2a), consisting of curved segments (convex towards Per) [3]. The image in Fig.2b reveals regularly spaced misfit dislocations at the positions of “cusps” (see the 2D model in Fig.2c), occurring every ~4.5 nm. A similar configuration is observed at another interface area equivalent with a 90° rotation of the structure in Fig.2b. These results unveil the 3D configuration of the interface, which has a grid of convex protrusions of spinel into periclase with misfit dislocation at each minimum (Fig2d). The structure reveals the mechanism of the interface migration: the climb of the misfit dislocations is the rate-limiting factor and therefore leads to this scalloped geometry. Furthermore, the extra atoms required for dislocation climb leave behind vacancies that eventually form pores at the interface, which provides additional resistance to interface motion and leads to doming of the interface on the scale of individual grains. These results also show that a fundamental understanding of the interface reaction and migration on the atomic scale is the key for understanding the interface migration on the larger scale.

 Reference:

[1] GÖTZE, L. C. et al., Phys. Chem. Minerals, 41, 681-693 (2014)

[2] Jeřábek, P. et al., American Journal of Science, 314, 940-965 (2014)

[3] C. Li et al., submitted (2016)

[4] This research was funded by the EU’s Horizon 2020 Marie Curie grants No. 656378–Interfacial Reactions (CL) and the Austrian Science Fund (FWF): I1704-N19 in the framework of FOR741-DACH (GH). 


Chen LI (Vienna, Austria), Thomas GRIFFITHS, Timothy J. PENNYCOOK, Clemens MANGLER, Lutz C. GÖTZE, Petr JEŘÁBEK, Jannik MEYER, Gerlinde HABLER, Abart RAINER
11:30 - 11:45 #6178 - MS08-OP310 3D analytical investigation of melting at lower mantle conditions in the laser-heated diamond anvil cell.
3D analytical investigation of melting at lower mantle conditions in the laser-heated diamond anvil cell.

Diamond anvil cell (DAC) is a unique tool to study materials under static high pressures up to several hundreds of GPa comparable to the pressures in the earth and planets interior. By using laser heating the temperature of the material inside the cell can be raised to several thousand degrees. This allows us to reach to the pressure and temperature conditions of deep mantle in laser heated diamond anvil cell (LHDAC). On the other hand small heated volume of the sample adjacent to the high thermally conductive diamonds results in large temperature and pressure gradients which affect the phase transformation and chemical distribution in LHDAC.

To fully understand the phase assemblages and equilibrium inside the LHDAC, it is essential to use three dimensional analytical characterization methods. As a proxy to deep mantle composition, San Carlos olivine has been chosen as a starting material for this study. To observe the effect of pressure and heating time, five samples are prepared. Three samples were melted at ~3000 K and at 45 GPa for durations of 1, 3 and 6 minutes. Other two samples were melted for 3 minutes at 30 GPa and 71 GPa. Each sample was then sliced by focused ion beam (FIB) with slice thickness of 50-100 nm. A secondary electron image and an energy dispersive x-ray (EDX) map were acquired from each slice by scanning electron microscope (SEM) in a dual beam FIB instrument. Half of the heated area in each sample was used for 3D FIB tomography and the other half is used to extract a 100 nm thick thin section for subsequent analysis by analytical transmission electron microscope (TEM). TEM is used to obtain accurate EDX maps from the phases. Also, the structure of crystalline phases has been characterized by electron diffraction technique.

3D reconstruction of SEM EDX maps (figure 1) shows that the heated area is roughly spherical and it consists of three main regions in all samples which correspond to ferropericlase (Mg­­, Fe)O (Fp), perovskite-structured bridgmanite (Mg,Fe)SiO3 (Brg) and iron-rich core. The bulk of the heated area is surrounded by ferropericlase shell. Then, we find a thick region of bridgmanite phase just inside the Fp shell and in the center lies an iron-rich core. In addition, in 45 GPa sample heated for 3 minutes we start to see another (Mg, Fe)O phase (Mw) around the core which is more iron-rich than the Fp shell. In the 45 GPa sample heated for 6 minutes this iron-rich oxide (Mw) entirely surrounds the iron-rich core. TEM analysis shows a third and even more iron-rich (Mg, Fe)O phase forming a thin layer (~70nm) between the Mw and the core. The core is getting richer in iron by increasing the pressure or heating time and its structure varies among the samples. For instance, in 45 GPa sample heated for 1 minute the core has eutectoid structure with iron nanoparticles distributed in it (figure 2) while in the 45 GPa sample heated for 6 minute we have a granular structure with the higher content of iron in the center of grains (figure 3). Moreover, we can see narrow Fp veins connecting the Fp shell to the iron-rich core in all of the samples, particularly in 71 GPa sample these veins are numerous and thick. In fact, they occupy a substantial part of Brg region in this sample.


Farhang NABIEI (Lausanne, Switzerland), Marco CANTONI, James BADRO, Susannah DORFMAN, Richard GAAL, Hélène PIET, Philippe GILLET
11:45 - 12:00 #6575 - MS08-OP311 Alteration mechanisms of limestone used in built cultural heritage : use of isotoping labelling to determine the water penetration and reaction sitesIn France 52% of the historical monuments are made out of limestone; the preservation of this material is.
Alteration mechanisms of limestone used in built cultural heritage : use of isotoping labelling to determine the water penetration and reaction sitesIn France 52% of the historical monuments are made out of limestone; the preservation of this material is.

In France 52% of the historical monuments are made out of limestone; the preservation of this material is therefore an economic, scientific and cultural challenge. In urban area, limestones used in the façade of the buildings are exposed to a polluted environment and their degradation is already well documented. Several alteration processes are expected to occur such as phases precipitation and dissolution. In such environment, the most common alteration secondary phase is gypsum (CaSO4, 2H2O) formed from the reaction between calcareous stones, environmental water and sulfuric acid from the atmosphere.

Whatever the alteration process, water as rainfall (wet deposition) or as vapor state (dry deposition) is the alteration agent, so that it is the main parameter to focus on .Thus in order to better understand the stone/water interaction and to propose solutions for preserving the built cultural heritage, we developed an original methodology based on water isotopic tracers (D and 18O). Deuterium was used to localize water penetration front in the material, while 18O enabled to determine secondary phase reaction sites, mainly composed of gypsum.

Pristine samples from quarry and samples from Parisian monuments were selected to compare different alteration stages. Firstly, their main chemical and physical properties linked to the alteration were studied based on a multiscale characterization.(Saheb et al., 2015). Then, samples were altered in laboratory by realistic and controlled conditions of dry deposition during 2 months using isotopically labeled water. The reaction zones were analyzed by nano-SIMS. This experimentation enabled determining that water entirely penetrated in samples from quarry and from monuments, what highlights that the alteration layer does not seem to have a protection effect. In surface or deeper inside the sample, 18O enrichment highlights preferential reaction sites, localized in micro-cracks inside the gypsum zones and along grains of calcite (Figures 1 and 2).

This innovative methodology is a first step to understand the alteration mechanism formation on limestone used in the façade of the buildings. Understanding the mechanisms and especially the role of the alteration layer will contribute to improve the knowledge of stone chemical alteration processes to develop appropriate conservation strategies for the buildings.

References:

M. Saheb, J.D. Mertz, E. Colas, O. Rozenbaum, A. Chabas, A. Michelin, A. Verney-Carron, J.P. Sizun, Multiscale characterization of limestone used on monuments of cultural heritage, MRS Proceedings (2014), p. 1656. 


Adam DRICI (Creteil), Mandana SAHEB, Jean-Didier MERTZ, Aurélie VERNEY-CARRON, Loryelle SESSEGOLO, Laurent REMUSAT, Adriana GONZALEZ-CANO
12:00 - 12:15 #5749 - MS08-OP307 Correlative nonlinear optical microscopy and infrared nanoscopy reveals collagen degradation in altered parchments.
Correlative nonlinear optical microscopy and infrared nanoscopy reveals collagen degradation in altered parchments.

Non-invasive investigation techniques are strongly needed to avoid sampling during the examination of heritage artefacts. This study aims at developing specific and non-destructive mapping of the degradation of parchment, which is mainly composed of dermal fibrillar collagen. The main issue is to characterize gelatinization, its ultimate and irreversible alteration corresponding to collagen denaturation to gelatin, both from the morphological and chemical point of view. To that end, we implement correlative imaging of parchment using nonlinear optical (NLO) microscopy and nanoscale infrared spectroscopy (nanoIR).

NLO microscopy, also called multiphoton microscopy, advantageously provides non-invasive three-dimensional (3D) multimodal imaging of scattering samples with micrometer-scale resolution [1]. Among the collected signals, SHG signals are specific for dense non-centrosymmetric materials.  These signals therefore provide a unique structural probe of fibrillar collagen at the micrometer scale since the small signals from the collagen triple helices at molecular scale are amplified by constructive interferences at macromolecular scale due to the tight alignment of the collagen molecules to form collagen fibrils [2]. Nanoscale infrared spectroscopy is carried out thanks to an Atomic Force Microscope (AFM) coupled with an IR pulsed tunable laser [3]. This IR nanoscopy allows acquiring chemical mapping and local IR spectra to characterize and image samples at nanoscale.

Using this multiscale approach, key information about collagen and gelatin signatures is obtained in parchments and assessed by characterizing the denaturation of pure collagen reference samples. A new absorbing band is observed near the amide I band in the IR spectra, colocalized with the onset of fluorescence signals in NLO images. Meanwhile, a strong decrease is observed in Second Harmonic signals (see figure 1).

NLO microscopy therefore appears as a powerful tool to reveal collagen degradation in a non-invasive way. It should provide a relevant method to assess or monitor the condition of collagen-based materials in museum and archival collections and opens avenues for a broad range of applications regarding this widespread biological material.

[1] G. Latour, J.-P. Echard, M. Didier, and M.-C. Schanne-Klein, Opt. Express 20, 24623–24635 (2012).

[2] S. Bancelin, C. Aimé, I. Gusachenko, L. Kowalczuk, G. Latour, T. Coradin, and M.-C. Schanne-Klein, Nat. Commun. 5 (2014).

[3] A. Dazzi, C.B. Prater, Q. Hu, D.B. Chase, J.F. Rabolt, C. Marcott, Appl. Spectrosc. 66(12), 1365 (2012).


Gael LATOUR, Laurianne ROBINET, Alexandre DAZZI, François PORTIER, Ariane DENISET-BESSEAU, Marie-Claire SCHANNE-KLEIN (PALAISEAU CEDEX)
12:15 - 12:45 #8278 - MS08-S88 Watching works of art under the synchrotron lights to reveal their secrets.
Watching works of art under the synchrotron lights to reveal their secrets.

As early as he discovered X-rays in 1895, Roentgen envisaged their possible application for the study of works of art, and of paintings in particular. More than one century latter, X-rays are routinely used for the analysis of artworks. Beyond X-ray radiography (which application to paintings was patented already in 1914 (Bridgman, 1964)), many other X-ray based techniques can be used, such as X-ray fluorescence and X-ray diffraction, giving access to the chemical composition of ancient and artistic objects. Efforts are made to extend the use of such laboratory techniques in two main directions: on the one hand with the development of portable instruments, allowing on-site (museums, archaeological sites, historical buildings) analyses; on the other hand, exploiting the additional capabilities offered by synchrotron sources.

The brightness, collimation, polarization, emission spectrum and partial coherence of synchrotron beams offers: i) the possibility to focus the beam to few microns, down to few tens of nanometers, ii) improved detection limits, iii) access to the element speciation thanks to spectroscopy techniques, iv) reduced acquisition times, allowing the acquisition of many points, and in particular 2D and 3D scanning maps, v) additional contrast modes such as phase contrast imaging. Considering the technical constraints associated to the intrinsic properties of artistic materials (precious objects and samples of very limited size when available; highly heterogeneous at multi-scales; composed of a variety of materials (in/organic, un/crystallized, low/high Z elements)), these combined analytical strengths are highly beneficial (Bertrand, et al., 2012).

Here, we will present a set of recent examples of analysis of artistic and ancient materials, performed at the ESRF. Experiments usually aim at understanding how works of art were created (choice and synthesis of ingredients, in particular of pigments, firing temperature in the case of ceramics, etc). As an example, Figure1 shows a combined micro X-ray fluorescence, micro X-ray diffraction, micro X-ray absorption spectroscopy analysis of blue pigments in Chinese Qinghua porcelains. Fragments were sampled from sherds and prepared as thin sections (Top left). µXRF maps show particular concentration of Co and Ca in the pigment regions, and of iron on the surface (top right). Full-field XANES at the Co K-edge reveals the presence of two main Co species, in the pigment and in the glaze (bottom left: (a) transmission image recorded at 7670 eV, (b) the edge jump map, (c)  cluster maps and average XANES spectra obtained by PCA, (d) Speciation maps obtained from the least squares linear combination fitting (standards CoAl2O4 and Co in glaze)). Micro X-ray diffraction offers further determination of Co pigment lattice parameters (bottom right) (Wang, et al.).

Other experiments focus on degradation issues, and aim at identifying degradation products, and internal and external factors responsible for such instabilities. Figure 2 shows a typical example with the study of cinnabar darkening in Madonna with Child, St. Sebastian, St. John the Baptist and two donors, Boltraffio, Louvre (© C2RMF) (Cotte & Susini, 2009).

 

Acknowledgments

All the users whose work will be reported are highly acknowledged; all ESRF staff involved in the development and maintenance of instruments are thanked as well.

Reference

Bertrand, L., Cotte, M., Stampanoni, M., Thoury, M., Marone, F. &  Schöder, S. 2012. Development and trends in synchrotron studies of ancient and historical materials. Physics Reports, 519(2):51-96.

Bridgman, C. F. 1964. The amazing patent on the Radiography of Paintings. Studies in Conservation, 9(4):135-39.

Cotte, M. &  Susini, J. 2009. Watching Ancient Paintings through Synchrotron-Based X-Ray Microscopes. Mrs Bulletin, 34(6):403-05.

Wang, T., Zhu, T. Q., Feng, Z. Y., Fayard, B., Pouyet, E., Cotte, M., De Nolf, W., Salomé, M. &  Sciau, P. Synchrotron radiation-based multi-analytical approach for studying underglaze color: The microstructure of Chinese Qinghua blue decors (Ming dynasty). Analytica Chimica Acta.


Marine COTTE (GRENOBLE CEDEX 9)
Salon Tête d'Or

"Friday 02 September"

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LS3-I
10:30 - 12:45

LS3: Cell functional exploration
SLOT I

Chairpersons: Judith KLUMPERMAN (Chairperson, Utrecht, The Netherlands), Franck RIQUET (Chairperson, Lille, France)
10:30 - 11:00 #8648 - LS03-S10 mScarlet, a novel high quantum yield (71%) monomeric red fluorescent protein with enhanced properties for FRET- and super resolution microscopy.
mScarlet, a novel high quantum yield (71%) monomeric red fluorescent protein with enhanced properties for FRET- and super resolution microscopy.

mScarlet, a novel red fluorescent protein was generated from a synthetic template based on a consensus amino acid sequence derived from naturally occurring red fluorescent proteins and purple chromoproteins and on consensus monomerization mutations. The encoded synthetic red fluorescent protein was optimized by molecular evolution through site directed and random mutagenesis. Improved variants were selected by quantitative multimode screening for increased fluorescence lifetime, increased photo stability, increased quantum yield and for increased chromophore maturation.

Very bright variants were obtained with high fluorescence lifetimes up to 3.8 ns, quantum yields >70 % and complete maturation. The monomeric status of the variants was confirmed by OSER analysis and with a-tubulin fusions. The brightness of mScarlet is >2- fold increased as compared to bright red fluorescent proteins such as mCherry, mRuby2 and tagRFP-T as was analyzed with quantitative (single plasmid with viral 2A sequence) coexpression with mTurquoise2 in mammalian cells.

mScarlet can be used as a bright red fluorescent fusion tag for staining various subcellular structures in live cells. Because of their efficient maturation and high quantum yield, mScarlet vastly outperforms existing monomeric red fluorescent proteins in ratiometric FRET-microscopy applications due to seriously enhanced sensitized emission and lack of photochromism (figure 1).

During evolution mScarlet variants with substantially altered spectroscopic properties were generated including fluorescence lifetime variants, photo labile variants and strongly spectrally shifted variants. Besides looking at generally optimized properties such as increased lifetime, maturation and brightness, some of these variants were rescreened for blinking properties. An mScarlet variant (7Q2BMs-K) was identified that produced high spontaneous blinking upon illumination at 561 nm. This variant was fused to life-act and co-expressed with mVenus-Lifeact. With 488 and 561 nm excitation, dual life cell single molecule localization microscopy produced perfectly colocalized yellow and red actin structures in living cells (figure 2), demonstrating the usefulness of the novel red fluorescent proteins for life cell super-resolution microscopy.


Lindsay HAARBOSCH, Daphne BINDELS, Marten POSTMA, Mark HINK, Antoine ROYANT, Theodorus GADELLA (Amsterdam, The Netherlands)
Invited
11:00 - 11:30 #8437 - LS03-S11 Functionalized Carbon Nano-onions as Imaging Probes for Cancer Cells.
Functionalized Carbon Nano-onions as Imaging Probes for Cancer Cells.

Multimodal imaging probes based on carbon nano-onions (CNOs) have emerged as a platform for bioimaging because of their cell-penetration properties and minimal systemic toxicity. [1-3] We have developed a synthetic multi-functionalisation strategy for the introduction of different functionalities (receptor targeting unit and imaging unit) onto the surface of the CNOs. The modified CNOs display high brightness and photostability in aqueous solutions and their selective and rapid uptake in two different cancer cell lines without significant cytotoxicity is demonstrated. The localization of the functionalized CNOs in late-endosomes cell compartments is revealed by a correlative approach with confocal and transmission electron microscopy. [4] Understanding the biological response of functionalized CNOs with the capability to target cancer cells and localize the nanoparticles in the cellular environment, will pave the way for the development of a new generation of imaging probes for future biomedical studies.

[1] Yang, M. et al. Small 2013, 9, 4194. [2] Bartelmess, J. et al. RSC Adv.2015, 5, 50253–50258. [3] Marchesano, V. et al. Nanomaterials 2015, 5, 1331. [4] Frasconi, M. et al. Chem. Eur J. 2015 , 21, 1971.


Silvia GIORDANI (Genova, Italy), Marco FRASCONI, Roberto MAROTTA
Invited
11:30 - 12:00 #7883 - LS03-S12 Nanotomy and CLEM techniques shed new light on biomedical processes.
Nanotomy and CLEM techniques shed new light on biomedical processes.

A spectrum of dyes and probes now enable to localize molecules of interest within living cells by fluorescence microscopy. With electron microscopy (EM), cellular ultrastructure has been revealed. Bridging these two modalities, correlated light microscopy and EM (CLEM) opens new avenues [1].

The first focus will be on recent developed labeling strategies for molecules that allow CLEM (Fig.1). These include particles and substrates to highlight endogenous proteins that are targeted using affinity, but also genetically-encoded probes [2], and traditional stains for light microscopy that aid in EM-analysis of samples. Probes that can only be detected in a single modality, and require image overlay, as well as combinatorial probes that can be visualized both at LM and EM levels will be discussed.

In addition, new approaches for large scale EM (“nanotomy”),  either TEM-based [3] or S(T)EM-based [4,5], to visualize macromolecules and organelles in the context of organized cell systems and tissues will be highlighted. Matching the areas of acquisition in CLEM and EM will not only increase understanding of the molecules in the context, but also is a straight forward manner to combine the LM and EM image data. While these new developments aid to better understand the contribution of molecules, organelles and cells in tissue-function, the amount of data is huge and quantification and sharing data need new solutions. We will show how millions of particles can be recognized and quantified using Fiji. Moreover, our open-access data-sharing (Fig.2) via nanotomy.org will be highlighted to easily access the ultrastructure in a variety of research projects, including blistering diseases that affect skin and mucosa in men and Type 1 diabetes.

Covering a variety of probes and approaches for image overlay will help to enable (new) users to broadly implement CLEM and/or nanotomy to better understand how molecules (mal)function in biology [6].

 

References:

 

[1] De Boer et al. (2015) CLEM: Ultrastructure lights up! Nature Methods 12:503

[2] Kuipers et al. (2015) FLIPPER for CLEM. Cell & Tissue Research 360:61

[3] Ravelli et al. (2013) Destruction (…) in T1D rats at macromolecular resolution. Sci. Reports 3:1804

[4] Sokol et al. (2015) Nanotomy of blistering diseases. J. Investigative Dermatology 135:1763

[5] Kuipers et al. (2015) SEM-based immunolabelling and nanotomy. Exp. Cell Res. 337:202

[6] Sponsored by ZonMW91111.006; NWO175-010-2009-023 ; STW Microscopy Valley 12718


Ben GIEPMANS (AV Groningen, The Netherlands)
Invited
12:00 - 12:15 #4565 - LS03-OP018 Monitoring Cell Death in Real-Time/Time-Lapse Studies.
Monitoring Cell Death in Real-Time/Time-Lapse Studies.

     Personalised medicine, chronic exposure drug toxicity and environmental contaminants amongst others have created the demand for in vitro assays which are more physiologically relevant. One aspect of this may be to run assays for many days and monitor them in real-time or time-lapse mode. Therein, it can be useful to assess the general cell survival or perhaps a specific cell death pathway in the context of the treatment or insult under observation.

     Depending on the sample under analysis, to date, this can be done by either marking the cells that remain functionally competent or measure release of ATP at a bulk level. It would be preferable if, conversely, only dead/damaged/apoptotic cells were marked in a binary manner, with a convenient and spectrally separated emission signature and with specificity for a predictable intracellular target such as gDNA, and cell-by-cell.

     To explore this need a novel far-red DNA binding viability probe, DRAQ7, has been developed. It has been shown to have undetectable toxicity in long-term / real-time cell based assays as validated in recent publications (Akagi et al., 2013, Marciniak et al., 2013, Wang et al., 2015, Liang et al., 2015, and internal data) including ultra-sensitive bioassays for DNA intercalators, ex-plant tissue culture and nano-particle toxicity, time-lapse apoptosis assays and importantly in the presence of toxicants / anti-cancer compounds. Thus, cells can be exposed to it at any stage of an assay to permit realtime monitoring of loss of membrane integrity (in apoptosis, death). Being DNA specific it allows monitoring cell-by-cell while its spectral properties mean it can be incorporated into multi-colour flow cytometry experiments, or with Hoechst 33342 or CyTRAK Orange (for simple cell health assays) or with mitochondrial membrane potential probes such as TMRM.

     DRAQ7 is truly cell impermeant yet retains the DNA targeting and far-red fluorescence of the parent DRAQ chromophore. Accordingly, it likewise can be used on HCS imaging platforms, fluorescence microscopes, cytometers and sorters. Its spectral properties (long wavelength) are particularly suited to penetrative imaging of multicellular structures and thick ex-plant tissue sections.

     The presentation will focus on the deployment and application of DRAQ7 to demanding real-time and 3D micro-tissue assays including patient-derived samples that enable strategies for personalised medicine, underpinned by core performance data that define its unique properties as a cross-platform imaging probe for cell viability.


Roy EDWARD (Shepshed, United Kingdom)
12:15 - 12:30 #5901 - LS03-OP020 High-Resolution Phosphorescence Lifetime Imaging of Oxygen in 3D Tissue Models.
High-Resolution Phosphorescence Lifetime Imaging of Oxygen in 3D Tissue Models.

Molecular oxygen (O2) plays a multitude of important roles in cell and tissue function and (patho)physiology. Real-time quantitative imaging of O2 by phosphorescence quenching method enables detailed mechanistic studies of cell and tissue physiology, responses to hypoxia, drug treatment and other stimuli. We applied high-resolution Phosphorescence Lifetime Imaging Microscopy (PLIM) to study several different 3D tissue models: multi-cellular spheroids, excised animal tissue and cultured organoids. To achieve efficient, stable passive staining of the cells and tissues, we have designed a panel of cell-penetrating phosphorescent nanosensors with variable surface charge and spectral characteristics, and a small molecule O2 probe, Pt-Glc, which provides fast and in-depth staining of most cell models. Using Pt-Glc and PLIM we studied cultures of PC12 (rat pheochromocytoma) and HCT116 (human colon cancer) cell spheroids, intestinal organoids and ex vivo brain, colon, bladder and vessel tissue samples. We showed that cell aggregates of >50 um size are significantly deoxygenated under ambient O2, but remain viable and respond to treatment with compounds affecting metabolism. For the neurospheres from embryonic rat brain, standard protocol was developed for O2 imaging by PLIM, multiplexed with immunofluorescence of cell type, proliferation and death markers. In giant umbrella cells of mouse bladder epithelium we observed marked intracellular gradients of O2 of up to 40-50 mM across the cell or 0.6 mM/mm, which may play physiological roles in tissue function. We found decreased respiration in the colonocytes in dextran sulfate sodium (DSS)-induced colitis mouse colon tissue. These results demonstrate the utility of cell-penetrating O2 probes and PLIM method for life science research. 

This work was supported by Science Foundation Ireland (SFI) grants 12/RC/2276 and 13/SIRG/2144.


Dmitri PAPKOVSKY (Cork, Ireland), Alexander ZHDANOV, Ruslan DMITRIEV
12:30 - 12:45 #5802 - LS03-OP019 Multi-modal in vivo visualization of single cell dynamics by 1P, 2P, light-sheet, and on-chip technologies.
Multi-modal in vivo visualization of single cell dynamics by 1P, 2P, light-sheet, and on-chip technologies.

We made fluorescence multi-scale imager including 1P, 2P, light-sheet, microscope, and on-chip sensors for visualization of XYZT single cell dynamics in vivo. We integrated five microscope for systematic evaluation of living animals.

First visualization system is super-resolution imaging based on non-linear optics, with X- (resonance), Y-(galvano), and Z-(piezo) axis scanning. Real-time, multi-color XYZT multi-photon imaging enabled us to visualize single blood cell behavior in vessels and stroma. Spatial and time resolution was improved by pattern illumination. We analyzed thrombus formation, and inflammatory responses under microscope. We developed thrombus formation animal models, and elucidated cellular mechanisms of cardiovascular diseases. We directly manipulated cells by photo-chemical reactions, and two photon lasers to induce and observe thrombotic reactions. Using this system, we elucidated contribution of endothelial injuries to thrombus formation.

Second, high-resolutions and broad-imaging field was simultaneously enabled using 8K CMOS technologies, and 1P spinning disk confocal. We visualized whole organs and single cell in one image, and revealed complicated cell-cell interactions networks in single view. 8K, 60fps, and multi-color imaging visualized single platelet dynamics and tissue structural changes in single image.

Third, we performed light-sheet imaging for living mice, and enabled high-speed observation of living animals.

Fourth, macro imaging system for awake mice, pigs and humans was also developed, and free behavior monitoring revealed the tight association between metabolism and vascular reactions during daily life. Bioluminescent and fluorescent imaging from body surface using CMOS camera, image intensifier, and macro-lens enabled us to visualize cellular dynamics without anesthesia.

Last, wearable, implantable, and minimized devices for non-invasive recording were also developed using lens-less and on-chip technologies. We utilized SCMOS, micro-lens array, and LED illumination technologies.

 

In sum, we developed multi-scale imaging system which can evaluate cellular networks dysregulations in diseased conditions.


Satoshi NISHIMURA (TOCHIGI, Japan)
Salle Gratte Ciel 3
13:45

"Friday 02 September"

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MS1-III
13:45 - 15:45

MS1: Structural materials, defects and phase transformations
SLOT III

Chairpersons: Patricia DONNADIEU (Chairperson, ST MARTIN D'HERES CEDEX, France), Randi HOLMESTAD (Chairperson, Trondheim, Norway), Simon RINGER (Chairperson, Sydney, Australia)
13:45 - 14:15 #8770 - MS01-S68 ACOM-TEM and its application for the investigation of deformation pathways in nanocrystalline Pd and AuPd.
ACOM-TEM and its application for the investigation of deformation pathways in nanocrystalline Pd and AuPd.

Most of our current understanding of the deformation mechanisms active in nanocrystalline (nc) metals stems from in-situ deformation experiments on bulk materials using x-ray diffraction (XRD). However, XRD cannot directly resolve the local deformation processes, e.g. grain growth or twinning. For a local analysis, these processes are traditionally investigated using BF/DF-TEM. However, varying contrast due to local orientation changes, bending and defects during in-situ BF-TEM straining experiments make an accurate interpretation for nanometer sized grains difficult. On the other hand, Automated Crystal Orientation Mapping (ACOM-TEM) allows for the identification of the crystallographic orientation of all crystallites with sizes down to around 10 nm, well below the limit of electron back scatter diffraction (EBSD)1. Using template matching to reveal the crystal orientation, the ASTAR (Nanomegas) ACOM-TEM analysis offers an angular resolution that is nearly as good as EBSD1,2.

Recently, ACOM-TEM imaging in STEM modus was combined with in-situ straining inside a TEM3–5. This combination was the key to new data evaluation based on orientation maps. By tracking individual crystallites through a straining series the change of their orientation can be evaluated in order to distinguish between an overall crystallite rotation and sample bending. In addition, twinning/detwinning and grain growth can be directly followed and the automatic data evaluation leads to user independent quantitative statistical information such as grain size distribution3.

Recent investigations revealed some challenges using ACOM-TEM for in-situ experiments if there are overlapping crystallites. Overlapping crystallites lead to superimposed diffraction patterns that confuse the matching procedure. Tilting nc Pd in-situ and tracking the changes using ACOM-TEM, it became apparent that some orientations are more dominant than others during the matching procedure. Further, we present an ambiguity filter that reduces the number of pixels with a '180° ambiguity problem' (Fig. 1). The challenges discussed here for orientation mapping of nc materials do not only appear with ACOM-TEM, but are mostly an inherent problem of any TEM projection technique. However, using ACOM-TEM these limitations become apparent and can be properly analyzed, e.g. by mapping the rotation of many crystallites for a given area of interest. This enables to detect sample bending or tilting in a (in-situ) series of orientation maps, which cannot be measured by BF/DF-TEM.

The ACOM-TEM measurement and evaluation routine was applied to magnetron sputtered PdxAu1-x thin film samples of about 50 nm. Grain growth and grain fragmentation as well as twinning and detwinning have been observed to take place simultaneously at different locations. In addition, large angle grain rotations with ~39° and ~60° occur that can be related to twin formation, twin migration and twin-twin interaction as a result of partial dislocation activity (Fig. 2). Furthermore, plastic deformation in nanocrystalline thin films was found to be partially reversible upon rupture of the film. In conclusion, conventional deformation mechanisms are still active in nanocrystalline metals, however, with different weighting than in conventional materials with coarser grains.

We would like to acknowledge Christian Brandl, Edgar Rauch, Florian Bachmann, Ralf Hielscher, Ankush Kashiwar. This work was supported by the DFG under grant FOR714 and Karlsruhe Nano Micro Facility (KNMF).

References

(1)            Rauch, E. F.; Portillo, J.; Nicolopoulos, S.; Bultreys, D.; Rouvimov, S.; Moeck, P. Zeitschrift für Krist. 2010, 225 (2-3), 103–109.
(2)            Zaefferer, S. Cryst. Res. Technol. 2011, 46 (6), 607–628.
(3)            Kobler, A.; Kashiwar, A.; Hahn, H.; Kübel, C. Ultramicroscopy 2013, 128, 68–81.
(4)            Kobler, A.; Kübel, C. Imaging Microsc. 2014, No. 1.
(5)            Mompiou, F.; Legros, M. Scr. Mater. 2015, 99, 5–8.


Aaron KOBLER (Eggenstein-Leopoldshafen, Germany), Christian KÜBEL, Horst HAHN
Invited
14:15 - 14:30 #4875 - MS01-OP199 Measuring Charge Distribution in Nanoscale Magnesium Aluminate Spinel by Electron Energy-Loss Spectroscopy and Electron Holography.
Measuring Charge Distribution in Nanoscale Magnesium Aluminate Spinel by Electron Energy-Loss Spectroscopy and Electron Holography.

Charge distribution resulting in the formation of a space charge zone (SCZ) in ionic materials has a critical role on functional properties [1].  Even though significant advances in theoretical models have been accomplished, experimental evidence in nanoscale granular materials is indirect.

Here, we investigated the distribution of cations and defects on the formation of a SCZ in a nanoscale granular model system of non-stoichiometric MgO∙nAl2O3 (MAS, n= 0.95 and 1.07). The SCZ was investigated experimentally by electron energy-loss spectroscopy (EELS) and off-axis electron holography (OAEH).

EEL spectra were collected along directions perpendicular to grain boundaries (GB’s), from which the magnesium-to-aluminum relative cation concentrations were calculated, as presented in Fig.1. We found that regardless of annealing processes, the vicinity of GB’s of the Mg rich spinel has excess Mg+2 cations while the vicinity of GB’s of the Al rich spinel has excess of Al+3 cations. Additionally, the cation distribution shows strong dependency on the grain size. For non-stoichiometric MAS, cation concentration is proportional to the defect concentration, because deviation from stoichiometry results in adjacent defects that compensate for the electric charge [2, 3, 4]. In both materials, the cation distribution is inhomogeneous for grains smaller than 40 nm. For larger grains, the defect concentration approaches the bulk value at the center of the grain. Furthermore, excess of Mg (Al) cations at the vicinity of the GB decreased with increase of grain size. Maier et al. [1] calculated that for grain size at the scale of the Debye length (estimated at 9nm for non-stoichiometric MAS studied here [7]), the GC is no longer electrically neutral, instead influenced by accumulation or depletion of charge at the boundaries.

Due to the lack of accurate values for defect formation energy [5, 6], we applied OAEH to measure directly the electrostatic charge distribution in nano-sized MAS. We show that charge distribution and the buildup of electrostatic potential between GB and core are linked to the spatial distribution of defects rather than the overall composition of MAS (Fig. 2). At the vicinity of GB’s, excess Mg+2 or Al+3 cations accumulate depending on the composition, the magnitude of which increases with decreasing grain size. Indeed, the potential distributions show the relation between the excess cation species, grain size and the Debye length, in agreement with theoretical models [1].

References:

[1] J. Maier, Prog. Solid State Chem. 23, 171-263 (1995).

[2] M. Rubat du Merac et al., J Am Ceram Soc. 96 (2013) 3341-3365.

[3] S.T. Murphy et al, Philosophical Magazine. 90 (2010) 1297-1305.

[4] Y. Chiang, W.D. Kingery, J Am Ceram Soc. 73 (1990) 1153-1158.

[5] K. Lehovec, J. Chem. Phys. 21, 1123-1128 (1953).

[6] K. Kliewer & J. Koehler,. Phys. Rev. 140, A1226 (1965).

[7] M. Halabi, V. Ezertzky, A. Kohn and S. Hayun, submitted.


Mahdi HALABI (Beer-Sheva, Israel), Amit KOHN, Shmuel HAYUN
14:30 - 14:45 #6841 - MS01-OP214 Improved Quantitative Compositional Analysis of γ’ and γ’’ in Additively Manufactured Alloy 718 Using STEM X-ray Energy Dispersive Spectrometry.
Improved Quantitative Compositional Analysis of γ’ and γ’’ in Additively Manufactured Alloy 718 Using STEM X-ray Energy Dispersive Spectrometry.

Selective laser melting (SLM) is an additive manufacturing technique where successive laser beam passes are used to melt metal powder which forms a solid layer on solidification with high densification, little material waste, and large design freedom [1]. The application of SLM to repair high temperature components that often need reconditioning requires an understanding of the microstructural and compositional developments of the chosen material throughout the SLM process. Alloy 718 is a Ni-Cr-Fe-Nb-Ti-Al alloy used in applications where high strength is needed while maintaining corrosion and creep resistance, making this alloy a prime candidate for SLM structural and compositional characterization. Precipitation hardening is one of the primary strengthening mechanisms of Alloy 718, where intermetallic phases of L12-ordered Ni3(Al, Ti) (γ’) or D200-ordered Ni3(Nb, Ti) (γ’’) may form coherent precipitate particles in the face-centered cubic matrix (γ) [2]. Additional phases that may be present in the microstructure of Alloy 718 include D0a-ordered Ni3Nb (δ), MC, M6C, M23C6, and (Ni, Cr, Fe)2(Nb, Mo, Ti) Laves [3, 4]. The complex microstructures in this alloy system are further complicated by the multiple heating and cooling cycles present in the SLM process, thus requiring characterization on the nanoscale in order to understand the microstructural development during processing.                           

Analytical electron microscopy allows the identification of the particular microstructural components on the micro and nano scales.  Alloy 718 is of particular interest in that the γ’ precipitates can nucleate on the (001) surface of γ’’ precipitates in the as-SLM condition. The structure and chemical composition of these precipitates was investigated through X-ray energy dispersive spectrometry (XEDS) using an aberration-corrected FEI Titan G2 ChemiSTEM equipped with the Super X EDX X-ray detector configuration. Figure 1 shows a γ’’ precipitate with γ’ precipitates on the two elongated sides of the γ’’ in both scanning transmission electron microscopy (STEM) bright-field (BF) and high-angle annular dark-field (HAADF) imaging modes. The understanding the formation of γ’/γ’’ requires both structural information about the interface and chemical analysis across the interface of the two precipitates. Figure 2 displays 4 XEDS spectrum images of Ni, Nb, Ti, and Al showing the location of these elements throughout the precipitates present in the γ matrix. Quantitative XEDS analysis was performed on an as printed Alloy 718 specimen where the γ matrix composition was found to be 50.5 wt % Ni, 1.4 wt % Nb, 0.3 wt % Al, and 0.09 wt % Ti with γ’ and γ’’ having compositions of 66.6 wt % Ni, 7.13 wt % Nb,  3.18 wt % Ti, and 2.4 wt % Al and 65.0 wt % Ni, 25.4 wt % Nb, 0.37 wt % Al and 3.6 wt % Ti, respectively.             

References:

[1] Gu, D.D., Meiners, W., Wissenbach, K., Poprawe, R., Int. Mater. Rev., 2012, 57, 133-164.

[2] Azadian, S., Wei, L.Y., and Warren, R., Mater. Charact., 2004, 53, 7.

[3] Burke, M.G. and Miller, M.K., J. de Physique, 1989, 50, C8 395-400.

[4] Rama, J.G.D., Reddya, A.V., Raob, K.P., Reddyc, G.M., Sundar, J.K.S., J. Mater. Process. Tech., 2005, 167, 73.


C. Austin WADE (Manchester, United Kingdom), Giacomo BERTALI, Thijs WITHAAR, David FOORD, Bert FREITAG, Grace BURKE
14:45 - 15:00 #6925 - MS01-OP216 Kinetic Behavior of Fe-Ni-C Martensitic Steels during Aging at Room Temperature.
Kinetic Behavior of Fe-Ni-C Martensitic Steels during Aging at Room Temperature.

The kinetic behavior of a Fe–24 Ni–0.4 C (weight percent) martensitic steel during aging at room temperature has been investigated by transmission electron microscopy. Electron diffraction, coupled with imaging techniques in a transmission electron microscope, including high resolution studies, have been used at various stages during the aging process, in order to characterize the microstructural features of the analyzed samples.

Rapid cooling (quenching) in liquid nitrogen of the austenitic state of the above-mentioned material leads to the formation of a martensitic phase which, at room temperature (RT), begins to transform, through a process called spinodal decomposition. As a result of this process, a modulated structure is formed, in which carbon-rich regions (precipitates) occur in a periodic manner throughout the matrix, leading to the presence of diffuse streaks or satellite spots around each fundamental (matrix) reflection on the electron diffraction patterns, see Figure1. This process is thus accompanied by a reduction of the tetragonality of the martensitic phase (bct), which evolves towards the formation of a cubic structure (bcc), see Figure2, corresponding to alpha-iron (ferrite). After long ageing times, Fe3C is observed. The presence and structure of intermediate carbides is also studied.  

The microstructure of the carbon-rich phase is also analyzed by electron diffraction. The evolution of the tetragonality with time, translated as the c/a ratio, which is also function of the carbon composition, is studied. Moreover, the variation of the distance between the carbon-rich precipitates (in fact, the periodicity of the modulated structure), along with the evolution of their width and length, are also observed.

 

Thanks are due to the Clym ( Centre Lyonnais de Microscopie) for the access to the TEM 2010F.


Sergiu CURELEA, Sophie CAZOTTES (VILLEURBANNE CEDEX), Thierry EPICIER, Frédéric DANOIX, Héléna ZAPOLSKY, Mikola LAVRSKYI, Philippe MAUGIS, Sara CHENTOUF, Mohamed GOUNE
15:00 - 15:15 #6327 - MS01-OP210 Influence of grain boundary character on void formation in nanotwinned copper.
Influence of grain boundary character on void formation in nanotwinned copper.

Most materials used in nuclear reactors are prone to radiation damage and their mechanical properties degrade with time, limiting their service life. Defects produced by high energy particle radiation can be highly mobile at high temperatures with their mobility being influenced by the local stress fields associated pre-existing defects and grain boundaries.  The relaxation of radiation defects can produce clusters and induce defect diffusion to interfaces and other pre-existing defects, where they can be absorbed and alter the microstructure that can detrimental to the material’s mechanical properties.  Radiation mechanisms that promote biased point defect diffusion can induce significant microstructural change and degrade properties. For instance, interstitials, being more mobile than the vacancies, are quickly absorbed by nearby dislocations, inducing creep by dislocation climb and dislocation multiplication that results in work hardening and embrittlement. Likewise, a small excess of remnant vacancies can agglomerate, leading to the formation of voids that cause swelling, increased residual stresses, the formation of microcracks, and the eventual failure of the material. The long-term stability of a microstructure under irradiation depends on its neutrality towards biased point defect dynamics. Materials with a high density of sites that can act as sinks for the point defects produced by high-energy particles would thus be an enabling technology for reliable and clean nuclear energy. 

 

We have explored radiation damage mechanisms in one such material, nanotwinned copper, which has a microstructure comprising a high density of coherent twin boundaries distributed in a “latter-like” morphology within columnar grains having high misorientation angle intercolumnar boundaries. By performing in-situ particle irradiation in a MeV TEM and characterizing the evolution in the microstructure using the Nanomegas ASTAR system, we have studied the irradiation induced damage and correlated the radiation induced grain boundary migration and void preferential void formation to the local grain boundary character and network.  In-situ observations were made at two different temperatures, room temperature and temperature above 573 K that stimulate void nucleation and growth. Figure 1 shows an example montage of the irradiation induced void formation and grain boundary migration with increased time and dose.  The radiation induced grain boundary migration (RIGM) of several high-angle random and low–angle grain boundaries within the irradiated zone was observed at both temperatures.  However, low-energy CSL type boundaries were not observed to migrate even at elevated temperatures as well as grain boundaries connected to junctions that contain one or more Σ3 boundaries. Thus, coherent twins are thought to stabilize the microstructure from radiation induced coarsening.

 

At temperature above 573 K during high-energy electron irradiations, copious amounts of voids were observed to nucleate and growth. They were predominantly observed to nucleate and grow in the regions with a high density of the coherent twin boundaries (CTBs).  Very few voids were observed around HARGBs and LAGBs as shown in Figure 2, and only a limited of number of small voids were observed in the vicinity of incoherent twin boundaries. Non-coordinated boundaries having excess free volume are efficient sinks for both vacancies and interstitials, and thus do not stimulate biased point defect diffusion that promote void formation, explaining the observed lack of voids in the vicinity of HARGBs. On the other hand, the observed high density of large voids in regions with finely spaced CTBs may arise from the biased diffusion of point defects. Interstitials being more mobile that are able to diffuse through CTBs can rapidly migrate and annihilate at free surfaces or other sinks such HARGBs. This leaves an excess of vacancies in the vicinity of the CTBs which can coalesce and cause the nucleation of voids.  Given these observations, a nanocrystalline material having a high fraction of CTBs, though being resistant to radiation induced coarsening, may not possess the ideal topology for radiation resilience and may be prone to increased void formation and swelling.


Thomas LAGRANGE (Lausanne, Switzerland)
15:15 - 15:30 #5362 - MS01-568 HRTEM study of structural defects and related deformation mechanisms induced by nanocompression of silicon.
MS01-568 HRTEM study of structural defects and related deformation mechanisms induced by nanocompression of silicon.

Over the last years, progress in nanomaterials design and manufacturing has revolutionized technology and opened up prospects for many scientific researches. The investigations of material properties (optical, electronic, mechanical...) at small scales have revealed amazing behaviors, different from those currently observed in bulk samples. For instance, silicon, which is known to behave at room temperature as a brittle material, shows an unexpected ductile behavior when the sample size decreases below a few hundreds of nanometers [1]. The mechanisms leading to this phenomenon remain, however, poorly understood. In this context, this research project aims at investigating in more details the deformation behavior of silicon nanopillars by combining experimental techniques (SEM, FIB, HRTEM) and molecular dynamics simulations. In this work, various nanopillars with different orientations and diameters (from 100 nm to 1 µm), were patterned by Reactive-Ion Etching and FIB micromachining. These pillars were then compressed with a slow-strain-rate (10-4 s-1) at room temperature using a nanoindenter equipped with a flat punch and operated in displacement-control mode. Post mortem observations of deformed nanopillars performed by SEM and TEM reveal the activation of different slip systems. The comparison between experimental and simulated HRTEM images notably evidences the simultaneous propagation of partial and perfect dislocations in {111} planes. In addition, unexpected plastic events have also been observed in {113} planes. On the basis of the microscopic observations, various possible deformation mechanisms involved during the nano-compression of the pillars are proposed.

 

[1] F. Östlund et al., Brittle-to-Ductile Transition in Uniaxial Compression of Silicon Pillars at Room Temperature, Adv. Func. Mat., 19, p1(2009).

 

This work is performed within the framework of the ANR-funded research project « BrIttle-to-Ductile Transition in Silicon at Low dimensions » (ANR-12-BS04-0003-01, SIMI4 program).


Amina MERABET (Marseille), Michaël TEXIER, Christophe TROMAS, Marc VERDIER, Anne TALNEAU, Olivier THOMAS, Julien GODET
15:30 - 15:45 #5906 - MS01-OP211 Strain relaxation defects in Ge crystals grown on Si pillars.
Strain relaxation defects in Ge crystals grown on Si pillars.

Due to the differences in lattice parameters and thermal expansion coefficients, Ge films grown on Si substrates suffer from a high density of threading dislocations, cracks and wafer bowing. One method to avoid these problems is to grow Ge crystals on (001)-Si pillars by low energy plasma enhanced chemical vapor deposition (LEPECVD). With this strategy, threading dislocations of 60° type with Burgers vector (b) b=1/2 can be avoided in the bulk as they end at the sidewalls of the Ge crystals. However, the misfit strain is not totally relaxed; it is accommodated by misfit dislocations (MDs) of 60° and 90° types, while planar defects have not been reported in these Ge crystals.

This work presents a detailed analysis of defects formed to relax the misfit strain between the Ge crystals and Si pillars using high angle annular dark-field scanning transmission electron microscopy (HAADF-STEM).

In Ge/Si interface, the misfit strain is accommodated by 60° and 90° MDs. The 90° MDs are Lomer MDs lying on (001) planes which are formed by interaction of two 60° MDs. These pairs of MDs form steps at the interface leading to an atomic roughness.

Most interestingly, besides the MDs, there is a high density of planar defects which has not been reported before. These 2D defects are formed at the Ge/Si interface and extend between 3 to 40 nm along the {111} planes. We observed coherent twin boundaries (CTB), incoherent twin boundaries (ITBs) and stacking faults (SF) bounded by partial dislocations (PDs). Figure 1a shows CTBs of the ∑3{111}-type (red arrows), the distance between them is 2.95 nm. The inset of Fig. 1a is its Fourier transform (FFT), the twin plane correspond to GA(1-1-1)=GB(1-11) (GA and GB are grains A and B) and the corresponding planes for GA and GB are (1-11) and (1-1-1) respectively. The CTBs ends inside the crystal with an ∑3{112}-ITB (Fig 2b) having 6, 7, 5 rings along the boundary. Figure 1c shows an image of the CTB at the interface, the yellow arrows are the PDs accommodating the mismatch in the CTB. They are 30° Shockley PDs since the Ge grows in compressive films. The CTB are formed nearby the steps formed by the pairs of MDs.

Figure 1d shows a misfit partial dislocation (MPD) at the end of a SF.  The Burgers circuit around the dislocation gives b=1/6[1-12] which corresponds to a Shockley PD. The stacking sequence of the SF changes from AaBbCcAaBbCc… to AaBbCcBbAaBbCc (Fig. 2e). The SF is of extrinsic type since there is an extra plane in the stacking sequence. For the compressive Ge, the Shockley MPD with an extrinsic SF corresponds to 90° at the interface which in addition has  a perfect 60°  dislocation close to the PD. Figure 2f shows two SFs in (1-11) and (1-1-1) planes, they annihilate each other forming a stair rod dislocation (SRD). The stacking sequence of the SFs changes from AaBbCcAaBbCc… to AaBbCcBbCcAaBb… The SFs are of intrinsic type since there is a missing plane in the stacking sequence. The configuration of the MPDs at the interface in Ge with intrinsic SFs is 30° MPD at the interface and 90° MPD in the Ge. The two 90° PDs in the Ge interact with each other and form the SRD with b=1/3[-110].

SFs are also found in the Ge crystal (Fig. 1g). The Burgers circuit around the PDs gives b=1/6[1-12] which corresponds to Shockley PDs. These intrinsic SFs (Fig. 1h) are formed by the dissociation of perfect 60° dislocations.

We conclude that the misfit strain between Si and Ge is accommodated by 60° and 90° MDs, the 60° MDs splitting to form MPDs and CTB. The MPDs form extrinsic or intrinsic SFs. Intrinsic SFs are interacting with each other forming SRD. Overall, it can be summarized that the defect chemistry in Ge pillars is more complex than reported in earlier studies. This might have significant impact on the electronic properties of these binary semiconductor heterostructures.


Yadira ARROYO ROJAS DASILVA (Dübendorf, Switzerland), Marta D. ROSSELL, Rolf ERNI, Fabio ISA, Giovanni ISELLA, Hans VON KÄNEL, Pierangelo GRÖNING
Amphithéâtre

"Friday 02 September"

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IM8-IV
13:45 - 15:45

IM8: Spectromicroscopies and analytical microscopy
SLOT IV

Chairpersons: Gerald KOTHLEITNER (Chairperson, Graz, Austria), Anders MEIBOM (Chairperson, Lausanne, Switzerland), Bénédicte WAROT-FONROSE (Chairperson, CEMES, Toulouse, France)
13:45 - 14:15 #8675 - IM08-S56 From core and valence excitations to orbital mapping: a theorist's perspective.
From core and valence excitations to orbital mapping: a theorist's perspective.

Ab initio spectroscopy is a powerful combination of quantum-based theories and computer simulations, covering a wide range of theoretical and computational methods that incorporate many-body effects and interactions showing up in the excited state. This framework, combining density-functional theory (DFT) with many-body perturbation theory, not only allows for analyzing data obtained by experimental probes, but also for shining light onto the underlying physics. I will demonstrate this with a series of selected materials and excitation processes:

Oxygen K-edge spectra from the wide-gap semiconductor Ga2O3 will reveal how signals from atoms located in a particular environment can be selectively enhanced or quenched by adjusting the crystal orientation [1]. These results suggests ELNES, combined with ab initio many-body theory, to be a very powerful technique to characterize complex systems, with sensitivity to individual atomic species and their local environment.

With the example of self-assembled phases of functionalized azo-benzene it will be shown, how excitonic effects in core and valence excitations can be tuned by molecular packing [2], and how this may affect the switching functionality of the molecules.

Finally, I will discuss how transmission electron microscopy can be used for mapping atomic orbitals, exploring its capabilities by a first principles approach [3]. For defected graphene, exhibiting either an isolated vacancy or a substitutional nitrogen atom, different kinds of images are to be expected, depending on the orbital character (see Figure 1).

 

[1] C. Cocchi, H. Zschiesche, D. Nabok, A. Mogilatenko, M. Albrecht, Z. Galazka, H. Kirmse, C. Draxl, and C. T. Koch, submitted to Phys. Rev. B (2016).

[2] C. Cocchi and C. Draxl, Phys. Rev. B 92, 205105 (2015).

[3] L. Pardini, S. Löffler, G. Biddau, R. Hambach, U. Kaiser, C. Draxl, and P. Schattschneider, Phys. Rev. Lett. (2016); in print.


Claudia DRAXL (Berlin, Germany)
Invited
14:15 - 14:30 #5709 - IM08-OP140 EELS simulations in III-Nitride ternary alloys by DFT.
EELS simulations in III-Nitride ternary alloys by DFT.

III-V nitride ternary alloys, composed of two different third-column metals, e.g. Al, Ga, In... , and nitrogen, as in the case of AlxGa1-xN, are semiconductor materials that for the last years have been playing a crucial role in the development of novel applications. They are of foremost importance for the optoelectronic industry, for instance for the recent development of blue laser applications. Often in these devices, the desirable reduction of the typical integrated circuit dimensions is translated in increasing challenges to the growth and characterization techniques employed. Among the later, analytical transmission electron microscope (TEM) is an invaluable for its ability to obtain structural and chemical information about the structures and materials at the nanometer scale. For instance, electron energy-loss spectroscopy (EELS), a technique that is available in most modern TEM machines, allows the measurement of important valence properties by probing the low-loss region of the spectrum, containing signals from inter-band transitions and plasmon excitation.

 

We present a theoretical study of low-loss EELS using super-cell models for different concentrations of the metals, x, that allow to systematically study the whole compositional range, 0<x<1, with Δx = 0.125 resolution [1]. This study is carried out for the three foremost III-nitride semiconductor ternary alloys, AlxGa1-xN, InxAl1-xN and InxGa1-xN. In order to do this, automated DFT simulations have been carried out using Wien2k software and home-made scripts. Additionally to the typical DFT simulation scheme, we have corrected our calculations using the modified Becke-Johnson (mBJ) exchange-correlation potential. This correction represents a critical improvement over the former calculation, using generalized gradient approximation (GGA), which predicted wrong band-gap values.

 

For each concentration, x, of the ternary nitride compounds, AxB1-xN, with elements A and B combinations of Al, Ga and In, we obtain from our DFT simulations the complex dielectric function (CDF), ε(E) = ε1+i·ε2, where E is the energy-loss. Energy-loss spectra are proportional to the imaginary part of the inverse CDF, Im[-1/ε], also called the energy-loss function (ELF, see Figs. 1 and 2). Figure 1 contains the ELF-series obtained for the three studied ternary nitrides. In these series, the composition-related behavior of the most intense peak in EELS, the plasmon, is depicted.  It is generally accepted that the observed features in ternary nitride EELS, like band gap and plasmon onset energy, are related to the features observed in the pure binaries through a Vegard law of the form,

 

Ei(AxB1-xN) = x·Ei(AN) +(1-x)·Ei(BN) + x·(1-x)·b .

 

Where Ei is the observed energy for a feature i, and b is called the bowing parameter. We have used this formula to analyze both band gap and plasmon energy, Egap and Ep, respectively. In this sense, Egap is directly measured in the calculated band structures and density of states. Conversely, Ep is retrieved from a model-based fit of the ELF series. For this purpose, we chose the Drude model of quasi-free electron gas, which is a typical approach in experimental EELS. Figure 3 contains the results from these analyses, where the Egap and Ep appear in red and green color, respectively. The results show a somewhat inconsistent behavior of these two parameters in terms of slope and bowing of the derived Vegard laws (solid lines). This problem is especially poignant in In-rich compounds, in which the band gap offset is greater and also interband transitions are more important.

 

Because of this inconsistency, we have developed an alternative method to locate the plasmon energy, following the zero of the real part of the CDF (Fig. 2); Ecut, such that ε1(Ecut) = 0. A more reasonable agreement with the theoretical band gap as well as the experimentally measured Vegard law is obtained from this parameter. Finally, the role played by interband transitions in the calculations of In-rich compounds is also addressed.

[1]: A. Eljarrat, X. Sastre, S. Estradé and F. Peiró Microscopy and Microanalysis 2016 (Accepted) doi: 10.1017/S1431927616000106.


Alberto ELJARRAT ASCUNCE (Barcelona, Spain), Xavier SASTRE, Sònia ESTRADÉ, Francesca PEIRÓ
14:30 - 14:45 #5913 - IM08-OP146 Dislocation Modelling: Calculating EELS Spectra for Edge Dislocation in Bismuth Ferrite.
Dislocation Modelling: Calculating EELS Spectra for Edge Dislocation in Bismuth Ferrite.

Recent advances in electron energy-loss spectroscopy (EELS) triggered by the implementation of aberration correctors and novel spectrometers have enabled atomic resolution and single atom sensitivity. The energy-loss near-edge structure (ELNES) in core-loss EELS provides insight into the electronic structure of individual atomic species containing information about their bonding characteristics such as, e.g., oxidation state, charge transfer and site coordination. Yet the electronic structure information is buried in the spectral fine structure which can be regarded as a “fingerprint” of the atom’s bonding characteristics. In order to overcome this shortcoming of a purely experimental approach, the ELNES of core-loss EELS ionization edges can be obtained from first-principles electronic structure calculations.

 

BiFeO3 (BFO) is a multiferroic perovskite that exhibits antiferromagnetism coupled with ferroelectric order. Besides, because of their astounding electromechanical properties, BFO thin films are promising candidates for the replacement of lead-based ceramics in microelectromechanical system devices. It is well known that performance of ferroelectric devices is reduced by the presence of crystal defects such as edge dislocations. This type of crystal defects within this material1 are due to the lattice mismatch between the BFO film and the SrRuO3 substrate as  strain compensation mechanism. However, the electronic structure close to the dislocation core is not yet well understood. In this work, we investigate the influence of edge dislocations on the material’s local electronic properties, using a combined experimental and theoretical strategy based on HAADF-STEM, EELS and atomistic simulations.

 

In this study the edge dislocation within BFO was modelled based on Peierls-Nabarro Model (P-N model)2 theory. The initial guess was obtained from the P-N model and further optimized using BVVS classical potentials for BFO3 as incorporated in the LAMMPS package4. Fig 1 shows the final geometry of the edge dislocation model obtained after optimizing it with this potential. FEFF95, a real space multi-scattering  Core level spectroscopies code will be used on the final optimized model to obtain the O K-edge and Fe L-edge spectra at the dislocation core.  Fig 2 shows the experimentally recorded O K-edge EELS on a line of atomic columns (points 1 to 9) crossing the dislocation core. The comparison of the experimental spectrum with the calculated EELS allows shedding atomistic insight on the EELS peak structure. In particular, it is possible to explain to which extent a defect in a bulk material (in this case, an edge dislocation) locally affects its electronic properties, thus enhancing the power of electron energy-loss spectroscopy in the high-resolution description of complex materials.

 

 

(1)           Lubk, A.; Rossell, M. D.; Seidel, J.; Chu, Y. H.; Ramesh, R.; Hÿtch, M. J.; Snoeck, E. Electromechanical Coupling among Edge Dislocations, Domain Walls, and Nanodomains in BiFeO3 Revealed by Unit-Cell-Wise Strain and Polarization Maps. Nano Lett. 2013, 13 (4), 1410–1415.

(2)           Yao, Y.; Wang, T.; Wang, C. Peierls-Nabarro Model of Interfacial Misfit Dislocation: An Analytic Solution. Phys. Rev. B 1999, 59 (12), 8232–8236.

(3)           Liu, S.; Grinberg, I.; Rappe, A. M. Development of a Bond-Valence Based Interatomic Potential for BiFeO 3 for Accurate Molecular Dynamics Simulations. J. Phys. Condens. Matter 2013, 25 (10), 102202.

(4)           Plimpton, S. Fast Parallel Algorithms for Short-Range Molecular Dynamics. J. Comput. Phys. 1995, 117 (1), 1–19.

(5)           Rehr, J. J.; Kas, J. J.; Vila, F. D.; Prange, M. P.; Jorissen, K. Parameter-Free Calculations of X-Ray Spectra with FEFF9. Phys. Chem. Chem. Phys. 2010, 12 (21), 5503–5513.


Piyush AGRAWAL (Dübendorf, Switzerland), Marta D. ROSSELL, Cécile HÉBERT, Daniele PASSERONE, Rolf ERNI
14:45 - 15:00 #6448 - IM08-OP157 Theoretical and numerical investigation of the interaction between phase-shaped electron probes and plasmonic modes.
Theoretical and numerical investigation of the interaction between phase-shaped electron probes and plasmonic modes.

Optical vortices - i.e. electromagnetic fields with phase singularity - are well known objects and have been used for a decade in a wide range of applications in e.g. optics or astrophysics. Recently, it has been demonstrated that such vortices can be created in an electron microscope by tailoring the phase of the beam [1] and these so-called electron-vortex-beams have already proven their efficiency detecting magnetic state in a material or to probe chirality in a crystal [2].

Simultaneously, EEL spectroscopy in the low-loss region has attracted a tremendous interest due to its efficiency in resolving plasmonic resonance at the nanometer scale [3] and the underlying formalism is now firmly established [4]. However, because of the invariance of the electron probe along the propagation axis, low-loss EELS remained unable to detect plasmonic optical activity. However, electron-vortex-beams constitute a perfect candidate to overcome this limitation and measure the dichroic behavior of plasmons in an electron microscope - as recently pointed out through simulations by Asenjo-Garcia and García de Abajo [5].

In the present work, we developed a semiclassical formalism describing the interaction between an electron probe with an arbitrary phase profile and a plasmonic mode. Following [6], we used a quasi-static and classical description of the plasmon resonances while the electron probe is described in a fully quantum way. We showed that the equation ruling this interaction takes the elegant form of a transition matrix - between two electron states mediated by the eigenpotentials of the plasmon modes. Starting from this formalism, we built an analytical model describing the interaction between point charges and a vortex beam, which gave us a good insight into the physics of plasmonic dichroism. Important experimental inputs, such as convergence and collection angles, were considered. We also implemented a Matlab script within MNPBEM [7] in order to compute our equation and investigate the dichroic behavior of arbitrary plasmonic nano-structures (see Figure 1). 

In the conference, we will present the theoretical formalism and a wide variety of numerical studies of interactions between different nano-structures (e.g. helix, rod) and phase shaped electron probes (e.g. vortex beams, HG-like beams...), with a special emphasis on the experimental feasibility of the proposed geometries.

Acknowledgments:

GG, and JV acknowledge funding from ERC Starting Grant No. 278510-VORTEX.JV and MK also acknowledge under a contract for an Integrated Infrastructure Initiative, reference No. 312483- ESTEEM2

References

[1] Verbeeck and al, Nature 467, 301-304, 2010.

[2] Juchtmans and al, Phys. Rev. B 91, 094112, 2015.

[3] Colliex and al, Ultramicroscopy 162, A1-A24, 2016.

[4] García de Abajo, Kociak, Phys. Rev. Lett. 100, 106804, 2008.

[5] Asenjo-Garcia, García de Abajo, Phys. Rev. Lett. 113, 066102, 2014.

[6] Boudarham, Kociak, Phys. Rev. B 85, 245447, 2012.

[7] Hohenester, Trügler, Comput. Phys. Commun 183, 370, 2012.


Hugo LOURENÇO MARTINS (Palaiseau), Giulio GUZZINATI, Jo VERBEECK, Mathieu KOCIAK
15:00 - 15:15 #5877 - IM08-OP144 Determination of elemental ratio in an atomic column by STEM-EELS.
Determination of elemental ratio in an atomic column by STEM-EELS.

The elemental signals do not necessarily localize at atomic-column positions because the spatial resolution of an EELS signal is constrained by the delocalization of inelastic scattering and electron channeling process. These complexities make it difficult to perform quantitative analysis with atomic resolution. When we estimate the exact value of elemental ratio with atomic scale, full quantum mechanical simulations combined with experimental result are necessary. On the other hand, if there is a criterion about accuracy of experimental result about elemental ratio for an atomic column without simulation, it would be very useful. 

In this study, atomic-resolution quantification of the elemental ratio of Fe to Mn at octahedral and tetrahedral sites in brownmillerite Ca2Fe1.07Mn0.93O5 (Fig. 1) is demonstrated using STEM-EELS. It is known that Fe and Mn ions are nearly all ordered but not fully ordered, i.e., a small number of Fe and Mn ions reside in octahedral and tetrahedral sites, respectively. It was found that a considerable oversampling of the spectral imaging data yields a spatially resolved area that very nearly reflects atomic resolution (~1.2 Å in radius) for Fe and Mn L2,3-edge (Fig. 2). And the average relative compositions of Fe to Mn within the region were 17.7 to 82.3 ± 13.1 in octahedral sites and 80.7 to 19.3 ± 9.9 in tetrahedral sites. The actual atomic ratio was estimated by calculating the mixing of signals from nearest-neighbor columns using simple simulation based on multislice technique. It was concluded that the ratio of Fe to Mn was 14 to 86 at octahedral sites. It agrees well with the previous neutron diffraction experiment (14.4 to 85.6) which can correctly decide such information for bulk sample [1]. On the other hand, the experimental value and the estimation value from tetrahedral site have relatively large error compare with the result of neutron diffraction experiment (92.2 to 7.8). This means that an experimental oversampling SI data of Fe and Mn L2,3-edge from octahedral site in perovskite-like structure is probably interpreted with an uncertainty of approximately 10% without simulation.

[1] Hosaka, Y.; Ichikawa, N.; Saito, T.; Haruta, M.; Kimoto, K.; Kurata, H.; Shimakawa, Y. Bull. Chem. Soc. Jpn. 2015, 88, 657-661

Acknowledgements

This work was supported by JSPS KAKENHI Grant Numbers 26706015, 19GS0207 and 22740227. It is also supported by a grant for the Joint Project of Chemical Synthesis Core Research Institutions from the Ministry of Education, Culture, Sports, Science and Technology of Japan and by the Japan Science and Technology Agency, CREST.


Mitsutaka HARUTA (Kyoto, Japan), Yoshiteru HOSAKA, Noriya ICHIKAWA, Takashi SAITO, Yuichi SHIMAKAWA, Hiroki KURATA
15:15 - 15:30 #6374 - IM08-OP156 How multiple scattering simulations help for EELS compositional analysis of hard metals and ceramics.
How multiple scattering simulations help for EELS compositional analysis of hard metals and ceramics.

In the manufacturing process of hard metals and ceramics used as tooling materials, there is strong interest to determine the phases formed within the sintered bulk material or the thin coating of this sintered substrate. A compositional analysis of these, frequently sub-stoichiometric, phases based on electron energy-loss spectroscopy (EELS) is challenging and requires - besides the knowledge of other parameters - accurate ionization cross-sections. Most commonly, EELS ionization cross-sections are derived from analytical models (hydrogenic approximation) or from Hartree Slater oszillator strengths, and hence lack EELS fine-structure details (ELNES). Since fine-structures, however, can be indicative of chemical phases, a proper calculation of cross-sections around the ELNES regime can be beneficial for a more reliable analysis.

For this, an alternative route was followed, trying to obtain detailed differential cross-sections from ab initio multiple scattering calculations, as implemented in the FEFF9 code [1]. With this tool one can calculate EEL spectra (and energy differential cross-sections) based on Green’s functions theory when fed with crystal structure data.

 

One point of interest first of all is how integrated cross-sections for K-shell ionization edges between the hydrogenic model, calculated with the SIGMAK3 program [2] and FEFF9 [1] simulations compare with each other (Conditions for calculations were: E0= 200 eV; β= 5 mrad, integration window (Δ)= 200 eV starting at the edge’s threshold) (Fig.1). This is also interesting in the light of the fact that, over the past decades, hydrogenic calculations have been adjusted to better match experimental data for instance by adjusting the inner-shell screening constant (s) for non hydrogen-like atoms [e.g. 3, 4] (Fig.1).

Secondly, structural data, needed as input for FEFF, for known phases can be taken from data bases (e.g. FIZ Karlsruhe). Alternate, for materials with unknown structure or undefined phases the atomic positions can be determined by electron diffraction tomography experiments directly from single nano crystalline domains, as shown by Kolb et al. [e.g. 5,6].

In certain cases selected area electron diffraction (SAED) along with diffraction pattern (DP) simulations can help for phase determination of potential EELS reference samples as the example of TixSiC1-x shows (Fig. 2): three different structures of TixSiC1-x are described in literature [7]. The different stoichiometries can be distinguished by the length of the c-axis as there are a different numbers of Ti-layers between the Si-layers (Fig. 2.a). SAED does not only reveal epitactic growth of the carbide coating on the corundum substrate (Fig. 2(b, d, e)) but also, when compared to a diffraction simulation (JEMS) the stoichiometry of the coating can be clearly determined as Ti3SiC2 as the distances and intensities of the reflexions match the simulation (Fig. 2(c, f)).

The paper will discuss new possibilities in quantification and findings with this approach.

 

Acknowledgments

This work was carried out with the financial support by Sandvik Coromant and Sandvik Mining.

 

References:

[1] J.J. Rehr et al., Phys. Chem. Chem. Phys., 12, pp. 5503-5513 (2010).

[2] R.F. Egerton, EELS in the Electron Microscope, 3rd edition, Springer (2011).

[3] E. Clementi and D.L. Raimondi, J. Chem. Phys., 38, pp. 2686-2689 (1963).

[4] R.F. Egerton, Ultramicroscopy, 63, pp. 11-13 (1996).

[5] U. Kolb et al., Ultramicroscopy 107: 507-513 (2007).

[6] U. Kolb et al., Ultramicroscopy 108: 763-772 (2008).

[7] H. Högberg et al., Surf. Coat. Technol. 193: 6.10 (2005).


Lukas KONRAD (Graz, Austria), Martina LATTEMANN, John REHR, Ute KOLB, Zhao HAISHUANG, Gerald KOTHLEITNER
15:30 - 15:45 #6336 - IM08-OP152 New Opportunities in multi-frame STEM Spectroscopy & Fractional Beam-current EELS.
New Opportunities in multi-frame STEM Spectroscopy & Fractional Beam-current EELS.

    Electron energy-loss spectroscopy (EELS) and energy-dispersive x-ray spectroscopy (EDX) are two of the most common means of chemical analysis in the scanning transmission electron microscope (STEM). While the instrumentation hardware has progressed markedly in recent years, the way that microscopists operate these spectrometers has changed very little. In general small areas are scanned just using coarse pixilation, slow scan-speeds and high beam-currents. Finally, once acquired these chemical signals are usually expressed in only relative or arbitrary units. This stands in stark contrast with modern best-practice in STEM imaging, where wider fields of view are surveyed utilising multi-frame acquisitions, faster scan speeds, finer pixel sampling and lower electron doses. More recently it has also become common place to express STEM image data in units of fractional-beam-current facilitating direct comparison with simulation.

    We will present EELS and EDX results where best-practice techniques from STEM imaging have been repurposed to improve chemical map quality. Multi-frame spectrum-image data were recorded with simultaneous EELS and EDX spectra, before using non-rigid data registration [1] in the spatial domain, Figure 1. This not only reduces scan-distortion but also unlocks tools such as; digital super-resolution, strain mapping performed directly on chemical maps, and the digital accumulation of weak signals such as those from monochromated EELS. We also present an ‘equal fixed-dose’ fractionation study where sample damage was reduced drastically using a fast-scanning multi frame approach compared with its single scan equivalent.

    EELS spectrum data fidelity was improved by energy-drift tracking and correction [2,3]. After this, the limiting performance in multi-frame spectra becomes the spectral-noise and was found to depend strongly on the quality of the available dark-reference, Figure 2. To mitigate this artefact, separate dark-references and full-beam gain-references were recorded along with wholly un-processed experimental spectra. Further improvement in the noise performance was released by stepping the EELS spectra in energy between each scan before un-stepping them in post-processing [4]. Dark-correction was performed offline before dividing by the gain-reference to finally express the EELS spectra in terms of fractional beam current [5].

    It is expected that leveraging all these individually small improvements collectively will deliver more precise chemical maps while minimising sample damage and experimental time overheads.

Acknowledgments

The research leading to these results has received funding from the European Union Seventh Framework Programme under Grant Agreement 312483 - ESTEEM2 (Integrated Infrastructure Initiative–I3) and EPSRC grant code, EP/K040375/1, for the ‘South of England Analytical Electron Microscope’. SuperSTEM is the UK's facility for aberration corrected STEM funded by EPSRC.

References

[1]         L. Jones, H. Yang, T. J. Pennycook, M. S. J. Marshall, S. Van Aert, N. D. Browning, M. R. Castell, and P. D. Nellist, Adv. Struct. Chem. Imaging 1, 8 (2015).

[2]         K. Kimoto, K. Ishizuka, T. Asaka, T. Nagai, and Y. Matsui, Micron 36, 465 (2005).

[3]         Y. Sasano and S. Muto, J. Electron Microsc. (Tokyo). 57, 149 (2008).

[4]         M. Bosman and V. J. Keast, Ultramicroscopy 108, 837 (2008).

[5]          Y. Zhu and C. Dwyer, Microsc. Microanal. 20, 1070 (2014).


Lewys JONES (Oxford, United Kingdom), Aakash VARAMBHIA, Demie KEPAPTSOGLOU, Quentin RAMASSE, Robert FREER, Feridoon AZOUGH, Sergio LOZANO-PEREZ, Richard BEANLAND, Peter NELLIST
Salle Bellecour 1,2,3

"Friday 02 September"

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IM3-IV
13:45 - 15:45

IM3: Innovative SEM, imaging and analytical instruments
SLOT IV

Chairpersons: Emmanuel BEAUREPAIRE (Chairperson, Polytechnique, Paris, France), Christian COLLIEX (Chairperson, LPS, Orsay, France), Jörg ENDERLEIN (Chairperson, Göttingen, Germany), Andreas ENGEL (Chairperson, Delft, The Netherlands), Ernst H.K. STELZER (Professor) (Chairperson, Frankfurt am Main, Germany)
13:45 - 14:15 #7823 - IM03-S43 Integrated microscopy: Matching scales and capabilities in light and electron microscopy.
Integrated microscopy: Matching scales and capabilities in light and electron microscopy.

Superresolution techniques have pushed the resolution of fluorescence microscopy (FM) towards that of electron microscopy (EM)[1]. Meanwhile, developments in scanning EM (SEM) are revolutionizing EM, moving lateral image dimensions to typical FM fields-of-view[2] and extending imaging capability into the third dimension[3] and the live-cell regime[4]. By correlating data from both techniques[5], molecules can be localized within the context of cells and tissue and with reference to their live dynamics, but throughput and quantification are hindered by elaborate, expert procedures involving separate microscopes. In this presentation, I will show an integrated approach, with high-numerical aperture FM in a SEM, such that the electron beam can be positioned anywhere within the fluorescence field of view[6, 7]. Using electron-beam excited cathodoluminescence from the transparent sample substrate, we achieve automated FM-EM image registration (Fig. 1) with an accuracy that can be pushed to 5 nm, i.e. equalling biomolecular length scales. Besides integrated correlation microscopy, I will show our progress towards novel applications bridging fluorescence and electron microscopy, such as fluorescence-guided live-cell EM[8], and electron-beam identification and localization of labels, molecules, and cells.

[1]   B. Huang, M. Bates, and X. Zhuang, Annual review of biochemistry, 78, 993-1016 (2009).

[2]   R. B. G. Ravelli et al, Scientific Reports 3 (2013)

[3]   C. J. Peddie, and L.M. Collinson, Micron 61, 9-19(2014)

[4]   N. de Jonge, and F. M. Ross, Nature Nanotechnology 6 (11), 695-704 (2011)

[5]   P. de Boer, J.P. Hoogenboom, and B.N.G. Giepmans, Nature Methods 12(6.), 503–513 (2015).

[6]   A.C. Zonnevylle et al., Journal of Microscopy 252, 58-70 (2013).

[7]   N. Liv et al, PLoS ONE 8 (2), e55707 (2013)

[8]   N. Liv et al, ACS Nano 10, 265-273 (2016)


Jacob HOOGENBOOM (Delft, The Netherlands)
Invited
14:15 - 14:30 #5983 - IM03-OP090 Beyond elemental analysis in the electron microscope: accessing isotopes with in-situ TEM-SIMS correlative analysis.
Beyond elemental analysis in the electron microscope: accessing isotopes with in-situ TEM-SIMS correlative analysis.

Despite having superior spatial resolution, the analytical capabilities of Transmission Electron Microscopy (TEM), either Energy Dispersive X-ray Spectroscopy (EDS) or Electron Energy-Loss Spectroscopy (EELS) [1], are fundamentally limited in terms of isotopic analysis. Moreover, the analysis of light elements still remains out of reach. However, these analyses count among the advantages of Secondary Ion Mass Spectrometry (SIMS), which also provides high chemical sensitivity and high dynamical range, but offers poor lateral resolution [2]. Therefore, a combination of both techniques is the logical step to complement the strengths of SIMS with a high-resolution imaging technique such as TEM. As ex-situ approaches are prone to sample modification artefacts, we have developed an in-situ combination of TEM and SIMS called the Parallel Ion-Electron Spectrometry (PIES).

The developed prototype instrument [3] is based on a Tecnai F20 which has had its octagon and pole pieces modified to accommodate a FEI Magnum Ga+ focused Ion Beam (FIB) primary column and secondary ion extraction optics. This extraction optics, with extraction efficiency up to 90%, is coupled with a double focusing magnetic-sector mass spectrometer developed in house. Finally, another needed addition involved the sample holder, which was designed to be biased to high voltages (4.5 kV) and to act as the first electrode in the extraction system.

To highlight the new methodology developed in the instrument, lithium carbonate (Li2CO3) was chosen. Lithium exists in two stable isotopes in nature (6Li and 7Li) with very different abundances, 7.5% and 92.5%, respectively. A powder sample of Li2CO3 enriched in 6Li up to 95% was mixed with a natural-abundance sample. The goal of the investigation was the distinction of particles according to their isotopic abundance.

The correlative approaches for the information extraction can be regarded as two-directional. The first option, for samples with areas of interest depending on structure, TEM should be used first for identification of those areas, while SIMS will provide the analysis afterwards. The second option suits samples marked with isotopic (or elemental) labels. SIMS will then be used for localisation of the area of interest, to be further imaged at high resolution with TEM. Using this second approach, mass spectra were acquired for each of the individual materials before mixing them. Mass filtered images were acquired form the mixture. The subsequent imaging with TEM of the same area was used to assign each of the particles to one of the original materials according to their isotopic composition.

As the correlative approach leads to a multimodal imaging of the same regions of interest, and, in order to successfully exploit the results, there is need of correction of imaging artefacts as well as data fusion for obtaining high spatial resolution isotopic images. We will show how these new kinds of datasets can be obtained with this new instrument.

References

[1] R. F. Egerton, “Electron Energy-Loss Spectroscopy in the Electron Microscope” (3rd edition), (Springer, New York, 2011)

[2] A. Benninghoven, H. W. Werner, F. G. Rüdenauer, “Secondary ion mass spectrometry: Basic concepts, instrumental aspects, applications and trends” (Wiley-Interscience, New York, Chichester, Brisbane, Toronto, Singapore, 1987)

[3] T. Wirtz, et al, Nanotechnology 26, 434001 (2015)


Lluis YEDRA (Belvaux, Luxembourg), Santhana ESWARA, David DOWSETT, Tom WIRTZ
14:30 - 14:45 #6871 - IM03-OP100 A JEOL-based cooling holder with a low specimen drift allowing sub 1Å STEM imaging.
A JEOL-based cooling holder with a low specimen drift allowing sub 1Å STEM imaging.

With the development of aberration corrected microscopy has come the necessity of more stable sample stages, one area that needs further refinement is cryogenic sample system, both for biological imaging and for sensitive materials samples that would benefit from cryo-stability.  The basic principles of the holder are given in Fig. 1. It shows the main components of the cooling holder, the main coldness losses and the measures taken to create a thermal equilibrium, such that the drift is minimized. This allows for drifts of less than 2 nm/min and sub 1 Å resolution. In the cross-section of the holder, schematically given in Fig. 1, the outside tube contains a heater close to thermal isolator near the tip, such that the temperature of the outside tube can be regulated to the temperature of the goniometer (or any other temperature). This is done to minimize the drift related to thermal expansion and to prevent any cooling (from the tip of the holder) of parts of the goniometer. 

The thermal expansion stability is important since the cooling of the goniometer parts can result in unpredictable (slow) changes in the specimen position, for instance in the electron beam direction resulting in a focus change. In case of the temperature difference between the holder and the goniometer, the heat transfer between the outside rod and the goniometer is uncertain because it depends on the mechanical contact (that can vary with tilt) and the effect of the thermal gradient on each of the relevant components in the goniometer.   Likewise the “coldness” influx depends on quite a number of parameters, like the size of the beard, how deep it is in the liquid nitrogen, whether the dewar has a “good” cover to isolate and to prevent turbulence. For that reason we have an option of a heater close to the cryo-beard. Fig. 2 shows the experimental setup of the JEOL ARM, the holder and the dewar.

Our initial tests with the prototype sample holder on a sample of small gold particles on a thin C film show a resolution stability in HRTEM showing sub 1Å information transfer (Fig. 3).  This stability is sufficient to operate the holder in STEM HAADF imaging conditions (Fig. 4) which was acquired at 2k resolution with 17.6 us pixel dwell time.  Further work needs to be done to increase the operational duty cycle, however the basic configuration of the holder seems to provide a workable solution for high-resolution cryo-imaging.


David BELL (Cambridge, USA), Henny ZANDBERGEN
14:45 - 15:00 #6551 - IM03-OP096 Power of FIB-SEM Tomography for Biological Samples.
Power of FIB-SEM Tomography for Biological Samples.

Three-dimensional (3-D) spatial distribution of organelles within cells at nanometer resolution is essential to better understand cellular processes and functions. Currently, FIB-SEM tomography provides a promising technology to generate volume data with nanometer resolution (Bushby et al., 2011; Heymann et al., 2009; Knott et al., 2011; Villinger et al., 2012; Wei et al., 2012). A FIB-SEM microscope is a scanning electron microscope (SEM) combined with a focused ion beam (FIB) where both beams coincide at their focal points. This combination enables to locally section bulk embedded-resin samples by ion milling, creating a fresh surface for subsequent imaging with the electron beam. This process is repeated automatically to generate 3-D information of relatively large volumes with a field of view of several micrometers.

Any stained and embedded resin samples prepared for transmission microscope can be used for FIB-SEM tomography offering the possibility to visualise directly in 3D a wide range of biological samples and typically volumes with a pixel size of 10 nm can be achieve (Figure1). However, to obtain a better resolution, considerations have to be given concerning ultrastructure preservation and samples preparation (Kizilyaprak et al., 2015). High pressure freezing (HPF) combined with freeze-substitution (FS) and resin embedding constitutes a method of choice to find the best compromise between ultrastructural preservation and high contrast of cellular components (Figure2).

In conclusion, we propose biological sample preparation protocols that can serve as starting point to visualize in 3-D wide range of biological samples at nanometer resolution including HPF/FS samples and correlative microscopy approach using FIB-SEM Tomography.

References:

Bushby, A.J., P'Ng K, M., Young, R.D., Pinali, C., Knupp, C., Quantock, A.J., 2011. Nat Protoc 6, 845-858.

Heymann, J.A., Shi, D., Kim, S., Bliss, D., Milne, J.L., Subramaniam, S., 2009. Journal of structural biology 166, 1-7.

Kizilyaprak, C., Longo, G., Daraspe, J., Humbel, B.M., 2015. Journal of structural biology 189(2), 135-146.

Knott, G., Rosset, S., Cantoni, M., 2011. J Vis Exp, e2588.

Villinger, C., Gregorius, H., Kranz, C., Hohn, K., Munzberg, C., von Wichert, G., Mizaikoff, B., Wanner, G., Walther, P., 2012. Histochem Cell Biol 138, 549-556.

Wei, D., Jacobs, S., Modla, S., Zhang, S., Young, C.L., Cirino, R., Caplan, J., Czymmek, K., 2012. Biotechniques 53, 41-48.


Caroline KIZILYAPRAK (Lausanne, Switzerland), Florence NIEDERGANG, Damien DE BELLIS, Willy BLANCHARD, Jean DARASPE, Niko GELDNER, Bruno HUMBEL
15:00 - 15:15 #6736 - IM03-OP097 Helios G4: Combination of ultrathin damage-free TEM sample preparation and high-resolution STEM imaging in a single instrument.
Helios G4: Combination of ultrathin damage-free TEM sample preparation and high-resolution STEM imaging in a single instrument.

Development in semiconductor industry as well as in materials research has lead to a further decrease in observed features sizes. STEM in SEM imaging has been a well based and widely used technique to address this type of work. As a consequence of reducing feature size, there have been parallel requirement increases for high quality TEM sample preparation as well as for improved optical and detection performance of SEM/FIB systems. Here we introduce the very new generation of the FEI Helios product family, which addresses both of upper demands (preparation and resolution). Helios G4 introduces a brand new workflow, which combines ultrathin TEM sample preparation and high resolution STEM imaging in a single instrument.

 

Newly introduced Helios system enables the preparation of all common sampling methods: top-down, plan view, inverted and tomography. It integrates three sample manipulation devices, the well-established piezo stage for sample bulk processing, nanomanipulator for sample lift-out and double-tilt STEM Rod (TEM-like manipulator) for lamella thinning and high-resolution STEM imaging. All  manipulators are controlled via the microscope controller software, which allows automated switching between each manipulator and enables automation of the complete workflow. STEM Rod design with opening from one side enables access to sample by Focus Ion Beam (FIB), gas injection system, nanomanipulator and also provides optimized signal collection by analytical detector such as X-Ray EDS.

 

Focus Ion Beam is a known and commonly used technology for thin sample preparation. Helios G4 family employs the newly developed Phoenix FIB, which brings an advancement in low kV performance, allowing for precise beam placement at low acceleration voltage down to 500 V without compromising milling rates at high voltages. As a result, operator can create site-specific TEM samples with thickness below 10 nm with damage layer less than 1 nm.

 

Sample lift-out and transfer from bulk sample to the liftout grid is realized using FEI EasyLiftTM nanomanipulator. The grid is loaded in the STEM Rod with double-tilt functionality for SEM to access both sides of the lamella for precise end-pointing. STEM Rod is used for final thinning and cleaning and for subsequent high-resolution STEM imaging of prepared sample. The whole process is done in a system chamber without breaking vacuum. STEM Rod is also designed for sample transfer out of the specimen chamber for further analysis. The option is also to load previously prepared sample into the system and run the STEM imaging.

 

Helios G4, namely FX configuration, introduces the most advanced STEM imaging capability in existing SEM/FIB product portfolio. It is based on proven Elstar SEM column equipped with Schottky field emission gun with improved monochromator, delivering better resolution at higher beam currents. Elstar column works in a setup with configurable objective lens geometry and can be operated in conventional SEM/FIB mode, STEM/FIB end-pointing mode and high-resolution STEM imaging mode. Design of new STEM imaging and detection system brings significant leap forward in  resolution and also improvement in STEM contrast.

 

Helios G4 FX capabilities can be demonstrated on imaging of lattice planes on several materials as Carbon nanotubes (CNT, 0.34 nm at 20-30 kV) or Tungsten Disulfide (0.27 nm at 30kV). Users can benefit from simultaneous collection of various SEM/STEM signal types and acquire information about sample surface, structure and composition in a single scan.


Jan SKALICKY (Brno, Czech Republic), Tomas VYSTAVEL, Lubomir TUMA, Richard YOUNG
15:15 - 15:30 #4542 - IM03-OP080 ATOM-PROBE TOMOGRAPHY AND NANOSCIENCES.
ATOM-PROBE TOMOGRAPHY AND NANOSCIENCES.

The design of Atom probe tomography (APT) at Oxford and Rouen universities 25 years ago has been an outstanding breakthrough in the microscopy world. APT is the only analytical microscope able to provide 3D images of a material at the atomic scale [1]. Because of its ultimate spatial resolution (0.1 nm in depth, a few tenths of a nm at the sample surface), combined with its quantitativity in composition measurements, APT has played a major role for the investigation of the segregation of impurities to crystal defects or of the early stages of phase separation in solids. APT was the first to show Cottrell atmospheres (tiny clouds of impurity atoms around dislocations in crystals) at the atomic-scale in the dimensions of space [2].

 

A new breakthrough has been achieved ten years ago with the implementation of ultrafast pulsed laser (duration < 1ps) to atom probe tomography [3]. This new generation of instrument, designed in our lab and abroad, has made it possible the analysis of semi-conductors (figure 1) and oxides that are key materials in micro-electronics and nanosciences [4]. This major innovation with the use of FIB ion milling (focused ion beam)  to prepare samples in the region of interest opened a new insight in many fields of nanoscience related to nano-wires [5], nanostructured magnetic thin films [6], heavily-doped ultra-shallow junctions in microelectronics [7]. One of the biggest challenge being the atomic-scale reconstruction of MOSFET transistors [8,9]. Unique capabilities of atom probe tomography in nanoscience and salient findings will be highlighted on the basis of some selected illustrations. 3D APT reconstructions related to phase separation in GeMn self-organised thin films (figure 2) will be confronted to atomistic Kinetic Monte Carlo simulations conducted on rigid lattice [6].

 

[1] D. Blavette, A. Bostel, J.M. Sarrau, B. Deconihout  and A. Menand, 1993, Nature 363, 432

[2] D. Blavette, E. Cadel, A. Fraczkiewicz, A. Menand, 1999, Science 17, 2317

[3] B. Gault, F. Vurpillot, A. Vella, M. Gilbert, A. Menand, D. Blavette, B., 2006, Rev. Sci. Instr. 77, 043705

[4] S. Duguay, T. Philippe, F. Cristiano, D. Blavette, Applied Physics Letter (2010) 97, 242104

[5]  W. Chen et al. JAP, 111, 094909-094916

[6] I. Mouton, R, Larde, E. Talbot, C. Pareige, D. Blavette, JAP 115, 053515  (2014)

[7] Yang Qiu, Fuccio Cristiano, Karim Huet, Fulvio Mazzamuto, Giuseppe Fisicaro, Antonino La Magna, Maurice Quillec, Nikolay Cherkashin, Huiyuan Wang, Sébastien Duguay, and Didier Blavette, Nanoletters (2014) DOI: 10.1021/nl4042438

[8] R Estivill, M Juhel, M Gregoire, A Grenier, V Delaye, D Blavette , Scripta Materialia  (2015)113, 231-235

[9] A. Grenier, R. Serra, G. Audoit, Jp Barnes, S. Duguay, D. Blavette, N. Rolland, F. Vurpillot, P. Morin, P. Gouraud, Applied Physics Letters 106, 213102 (2015); doi: 10.1063/1.4921352


Didier BLAVETTE (Saint-Étienne-du-Rouvray), Isabelle MOUTON, Sébastien DUGUAY
15:30 - 15:45 #6933 - IM03-OP101 Dynamic-Transmission Electron Microscopy at the Relativistic Electron Gun for Atomic Exploration (REGAE) for live cell imaging.
Dynamic-Transmission Electron Microscopy at the Relativistic Electron Gun for Atomic Exploration (REGAE) for live cell imaging.

With the relativistic electron gun for atomic exploration (REGAE) we seek to observe structural dynamics both in real space imaging and diffraction [1]. REGAE is based on a RF gun accelerator and operates in the range from 2 to 5 MeV. RF gun technology allows high brightness for electron pulses at high energy. The machine is equipped with an RF cavity system, allowing for picosecond bunches with energy spread compensation to prevent limitations by chromatic aberrations and space charge. A custom made lens system for 3 MeV pulse energy system is set in place.

The presentation will include a discussion on space charge induced aberrations in dynamic HVEM, give estimates about the anticipated resolution and discuss the prospects for dynamic transmission electron microscopy of organic samples in environmental cells. Recent results making use of nano-fluidic cell technology developed in house will be presented as an outlook: DNA – nanoparticle multimers have been studied regarding their dynamic in liquid and stability under electron irradiation during TEM imaging in a conventional 200 keV microscope [2]. First experiments towards imaging dynamics in living cancer cells under environmental conditions in the TEM will be discussed [3].

 

 References

[1]     S. Manz et al. Faraday Discuss. 2015, 177, 467-491.

[2]     S. Keskin et al., J. Phys. Chem. Lett. 2015, 6, 4487−4492.

[3]     S. Besztejan et al., submitted, 2016.


Stephanie MANZ (Hamburg, Germany), Sercan KESKIN, Stephanie BESZTEJAN, Benno ZEITLER, Sana AZIM, Guenther KASSIER, Robert BUECKER, Deybith VENEGAS-ROJAS, Svenja RIEKEBERG, Dongfang ZHANG, Albert CASANDRUC, Rolf A. LOCH, Yinpeng ZHONG, Hossein DELSIM-HASHEMI, Sascha W. EPP, Klaus FLOETTMANN, Hoc Khiem TRIEU, Andrea RENTMEISTER, R. J. Dwayne MILLER
Salle Prestige Gratte Ciel

"Friday 02 September"

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MS5-III
13:45 - 15:45

MS5: Energy-related materials
SLOT III - Solar cells, thermoelectrics, storage

Chairpersons: Wolfgang JÄGER (Chairperson, Kiel, Germany), Joachim MAYER (Chairperson, Aachen, Germany), Philippe MOREAU (Chairperson, IMN, Nantes, France)
13:45 - 14:15 High Resolution and 3-D STEM of Energy Materials. Ilke ARSLAN (Invited speaker, Richland, USA)
Invited
14:15 - 14:30 #6370 - MS05-OP270 In situ TEM analysis of structural changes in metal-halide perovskite solar cells under electrical bias.
In situ TEM analysis of structural changes in metal-halide perovskite solar cells under electrical bias.

Organic-inorganic metal-halide perovskite solar cells are emerging as a promising photovoltaic technology to harvest solar energy, with latest efficiencies now surpassing 22%1 - an impressive increase from the first reported value of 3% in 2009.2 In addition to low manufacturing costs, the optical properties of such cells can be tailored to form efficient tandems when combined with high-efficiency silicon solar cells.3 A typical perovskite cell structure as investigated here is based on a methylammonium lead trihalide absorber (MAPbI3) that is placed between hole- (Spiro-OMeTAD) and electron-selective contacts (a fullerene-based material).

 

While new record efficiencies are frequently reported, the commercial application of this solar cell technology remains hindered by issues related to thermal and operational stability. Different mechanisms that are still debated modify cell properties with time, temperature, illumination and general operating conditions.4 In order to correlate applied voltage (V) and resulting current (I) to changes in active layer chemistry and structure on the nanometre scale, we performed both ex situ and in situ transmission electron microscopy (TEM) experiments, involving (scanning) TEM (STEM) imaging, selected-area electron diffraction, energy-dispersive X-ray spectroscopy and electron energy-loss spectroscopy. Samples were prepared by focused ion beam (FIB) milling, with exposure to air during transfer to the TEM minimised to <5 minutes to reduce any degradation of MAPbI3.

 

First, the effects of exposure to air and electron beam irradiation were assessed in relation to FIB final thinning parameters. Once adequate sample preparation and observation conditions were identified, changes in morphology during cell characterisation were assessed ex situ by comparing lamellae extracted from as-manufactured and tested cells and then in situ by contacting FIB-prepared samples to a microelectromechanical systems (MEMS) chip mounted in a TEM specimen holder5 (Fig. 1a). Cell manufacturing parameters led to iodine diffusion into the hole collector, with the width of this diffused layer remaining constant during I-V characterisation. Similarly to ex situ experiments, the MAPbI3/Spiro interface was observed to delaminate during in situ electrical measurements, resulting in the presence of a ~5 nm Pb-rich layer on the hole-transparent-layer side (Figs. 1b-c). In addition, PbI2 nanoparticles were observed to nucleate within the MAPbI3 layer at the hole-collector interface and at the positions of structural defects (Figs. 1b-d).

 

Overall, the active MAPbI3 layer was observed to be sensitive to sample preparation, exposure to air, observation conditions and I-V stimulus, resulting in the need for great care to deconvolute each effect. Different mechanisms that may all contribute to the decrease in efficiency of the cell were identified both ex situ and in situ, including ionic migration, PbI2 formation and local delamination of interfaces.

 

Acknowledgments

Financial support is gratefully acknowledged from the Swiss National Science Foundation (SNSF) Sinergia project DisCO and the European Union Seventh Framework Program under Grant Agreement 312483 – ESTEEM2 (Integrated Infrastructure Initiative – I3). The authors also wish to thank Max Kruth, Doris Merteens and Vadim Migunov.

 

1         NREL research cell efficiency records, 2016, http://www.nrel.gov/ncpv/.

2         A. Kojima et al., J. Am. Chem. Soc., 2009, 131, 6050–6051.

3         J. Werner et al., J. Phys. Chem. Lett., 2016, 7, 161–166.

4         S. D. Stranks et al., Nat. Nanotechnol., 2015, 10, 391–402.

5         M. Duchamp et al., Microsc. Microanal., 2014, 20, 1638–1645.


Quentin JEANGROS (Neuchâtel, Switzerland), Martial DUCHAMP, Jérémie WERNER, Rafal DUNIN-BORKOWSKI, Björn NIESEN, Christophe BALLIF, Aïcha HESSLER-WYSER
14:30 - 14:45 #5058 - MS05-OP261 Stabilization of the cubic perovskite BSCF phase by Y-doping.
Stabilization of the cubic perovskite BSCF phase by Y-doping.

Among complex oxides Ba0.5Sr0.5Co0.8Fe0.2O3-d (BSCF) exhibits excellent oxygen permeability due to its high oxygen non-stoichiometry. However, the favoured cubic perovskite phase tends to partly decompose in the desired operation temperature between 700 and 900 °C. Various secondary phases with high Co-content and low O-non-stoichiometry are formed close to grain boundaries [1]. The decomposition can be correlated with thermally activated O-vacancies. By lowering the temperature (from e.g. 1000 °C), the O-vacancy concentration decreases forcing the multivalent transition metal atoms (mainly Co) to increase their valence state to maintain charge neutrality. This leads to the collapse of the cubic phase because the tolerance factor shifts into the hexagonal regime [2]. The formation of secondary phases leads to a substantial reduction in the O-permeation [2].

To overcome this issue, doping was suggested which proved to be beneficial for several different cations (e.g. Zr, Y) [3,4]. Among these candidates, Y was chosen due to its monovalent character and large ionic radius which are both beneficial for stabilizing the cubic phase. Transmission/scanning electron microscopy (TEM/SEM) investigations were carried out on 1% (BSCF1Y) to 10% Y (BSCF10Y) B-site doped samples to analyse the phase constitution. O-permeation measurements were performed to assess the long-time permeability. Due to the intermediate ionic radius of Y the lattice position was checked using atom location by channeling enhanced microanalysis (ALCHEMI) [5].

BSCF tends to form a variety of secondary phases. Especially at high temperatures Co tends to diffuse out of the cubic lattice. This happens during the sintering process at high temperatures of 1050…1150 °C when CoO grains form close to grain boundaries. At lower temperatures partial phase decomposition to Ban+1ConO3n+3(Co8O8) (n ≥ 2, BCO), Co3O4 and Ba0.5+xSr0.5-xCoO3 (hexagonal) phases was demonstrated. Valence-state analysis of Co employing the Co-L2,3 white-line distance method [7] revealed that secondary phases with higher Co-valence state tend to be more stable at lower temperatures. Permeation measurements of BSCF10Y show that the degradation of O-permeation is reduced compared to undoped BSCF. This can be understood by the suppression of secondary phase formation in BSCF10Y at temperatures ≥800 °C (cf. Fig. 1 and Fig. 2). Secondary phases like BCO (cf. Fig. 3) and CoxOy are completely supressed by ≥ 3 at% Y-doping. The surfaces of permeation pellets show only minor amounts of BaSO4 which can be attributed to sulphur impurities in the feed gas. At lower temperatures (~700 °C) small volume fractions of the hexagonal phase are formed even in BSCF10Y (cf. Fig. 4). However, the volume fraction was negligible compared to the amount of secondary phases in undoped BSCF revealing a stabilizing effect on the cubic BSCF phase even at 700 °C.

ALCHEMI experiments showed unintended partial Y-occupation of up to 55 % on the A-site [8]. Therefore, Y doping is expected to generate B-site vacancies. These can contribute to the increased stability of the cubic phase because BSCF seems to tend towards B-site deficiency. To verify this hypothesis BSCF with 5% B-site deficiency was intentionally prepared which indeed showed less Co-outdiffusion and less pronounced secondary phase formation.

 

References

[1] P. Müller et al., Chem. Mater. 25, 564–573 (2013).

[2] S. Švarcová et al., SSI 178, 1787–1791 (2008).

[3] S. Yakovlev et al., Appl. Phys. Lett. 96, 254101 (2010).

[4] P. Haworth et al., Sep. Purif. Technol. 81, 88–93 (2011).

[5] J.C.H. Spence & J. Taftø, J. Microsc. 130, 147–154 (1983).

[6] M. Arnold et al., J. Membrane. Sci. 293, 44–52 (2007).

[7] P. Müller et al., Microsc. Microanal. 19, 1595–1605 (2013).

[8] M. Meffert et al., Microsc. Microanal. 22, 113-121 (2016).

[9] Financial support from the German Science Foundation (DFG) is gratefully acknowledged.


Matthias MEFFERT (Karlsruhe, Germany), Lana-Simone UNGER, Stefan BAUMANN, Christian NIEDRIG, Heike STÖRMER, Wolfgang MENESKLOU, Stefan WAGNER, Wilhelm Albert MEULENBERG, Ellen IVERS-TIFFÉE, Dagmar GERTHSEN
14:45 - 15:00 #6702 - MS05-OP274 Elemental mapping of perovskite solar cells using STEM and multivariate analysis.
Elemental mapping of perovskite solar cells using STEM and multivariate analysis.

Over the last few years, the interest in perovskite based solar cells has boomed, due to a surprisingly fast increase in terms of their efficiency that has now reached values comparable with established photovoltaic technologies. Nevertheless, the understanding of the optoelectronic properties of such nanostructured materials is still an open problem and issues related to their stability and degradation pathways represent the current hot topic in this research area.

Organic-inorganic solar cells present a complex composition as well as a composite structure that are strongly related to device fabrication. In this work four processing methods of the organic-inorganic halide perovskite have been investigated, varying the deposition method (single step or double step) and the atmospheres in which the synthesis has been carried out1. We compared interface quality, morphology, chemical composition and efficiency of the resulting cells. A fluorine doped tin oxide (FTO) glass layer was coated first by a compact (hole blocking) TiO2 layer and then by a nanoporous TiO2 layer. The TiO2 scaffold was infiltrated and capped by a methyl-ammonium lead iodide. Spiro-MeOTAD, acting as hole transport layer was spin coated on the perovskite layer; Au contacts were deposited on top. The devices were analysed using several complementary characterisation techniques: Scanning Transmission Electron Miscroscopy (STEM) used in conjunction with EDX analysis, time of flight secondary ion mass spectrometry (ToF-SIMS) and X-rays photoelectron spectroscopy (XPS). In particular, the use of FIB specimen preparation, combined with analytical transmission electron microscopy, represents a powerful and versatile tool for the characterization of devices based on hybrid composites with nano- and micro-scale structural and chemical features. EDX maps were then treated using multivariate analysis in order to optimise signal-to-noise ratio and obtain high quality EDX maps. The application of this method plays a key role in the analysis of data acquired with low electron doses to minimise specimen damage, and is unique in allowing the identification of different materials present in the sample as compounds rather than individual elements.

 

Having fully characterised the devices, we investigated the different degradation processes that affect the perovskite based solar cell. Air exposure and temperature were proven to be  responsible for the drastic reduction in device performance. STEM-EDX analysis was thus used in conjunction with the in situ heating, bringing the cells to 250 °C2. The main result was the direct observation of elemental migration, particularly evident in iodine maps, and the simultaneous formation of metallic Pb precipitates, resulting in the depletion of the initial perovskite region.

Lastly, we studied the changes in chemical composition and morphology after 2 months of air exposure in dark3. In this case the principal variations in local elemental composition and in morphology concerned respectively the migration of lead and iodine into the HTL layer towards the Au electrode, resulting in a severe degradation of the photoactive layer and the physical formation of bubbles in the Spiro-OMeTAD.

 

[1] F Matteocci, Y Busby, JJ Pireaux, G Divitini, S Cacovich, C Ducati, A. Di Carlo, Interface and composition analysis on perovskite solar cells, ACS applied materials & interfaces 7 (47), 26176-26183 (2015)

[2] G. Divitini, S. Cacovich, F. Matteocci, L. Cinà, A. Di Carlo, C. Ducati, In situ observation of heat-induced degradation of perovskite solar cells, Nature Energy, 15012 (2016)

[3] S. Cacovich, G. Divitini, C. Ireland, F. Matteocci, A. Di Carlo, C. Ducati, Study of ageing processes in perovskite solar cells using Scanning Transmission Electron Microscopy and multivariate analysis, Under review


Stefania CACOVICH (Cambridge, United Kingdom), Giorgio DIVITINI, Fabio MATTEOCCI, Yan BUSBY, Jean-Jacques PIREAUX, Aldo DI CARLO, Caterina DUCATI
15:00 - 15:15 #5985 - MS05-OP267 Investigating Cu diffusion in CdTe solar cells via aberration-corrected STEM: Cu2-xTe precipitates at CdTe twins and the CdTe/CdS interface.
Investigating Cu diffusion in CdTe solar cells via aberration-corrected STEM: Cu2-xTe precipitates at CdTe twins and the CdTe/CdS interface.

 CdTe is one of the most promising materials for thin film solar cells due to its near-optimum bandgap, high efficiency and low cost of fabrication. In order to reduce the contact resistance, it is common to deposit a thin Cu layer at the back of the cell. However, Cu is found to diffuse easily into the p-type CdTe layer and even to the n-type CdS layer. This diffusion causes a problem because too much Cu diffusion has been shown to cause performance degradation [1-2]. Therefore it is important to figure out the pathways of Cu diffusion, and the configurations that Cu stabilizes inside the CdTe solar cells.

 In this research, we employed aberration-corrected Scanning Transmission Electron Microscopy (STEM) combined with Electron Energy Loss Spectroscopy (EELS) or Energy Dispersive X-Ray Spectroscopy (EDX) to probe Cu diffusion in CdTe solar cells. We first investigated the cells with a typical Cu-annealing process at 150° C for 45 min in dry air under ambient pressure, but did not find very much Cu diffusion. Therefore we extended the annealing at 150° C for 8 hours in vacuum using our sample-baking system. The vacuum annealed samples show clear Cu diffusion traces along some of the grain boundaries (GBs). However not all the GBs became Cu-enriched, indicating that Cu diffusion may have a preference for different GBs (Fig.1). Moreover, STEM-EDX reveals Cu-rich precipitates embedded inside high-density twin boundaries in CdTe (Fig.2). The Cd concentration decreases while Te does not change on the precipitates, and no other elements were found, indicating the precipitates are most likely to be CuxTey. The CuxTey precipitates exist all the way along the high density of twin boundaries from the contact layer to the CdS layer, demonstrating another pathway for Cu diffusion.

 Similar CuxTey precipitates were found at the CdTe/CdS interface. A precipitate located at the edge of the STEM specimen without overlapping CdTe or CdS was used to quantify the ratio of Cu to Te via both EELS and Z-contrast image intensity. Both results show that the ratio of Cu to Te is slightly lower than 2:1, therefore the precipitate can be described as Cu2-xTe. Moreover, the atomic structure of the precipitates show variations from the normal CuTe structure, for example formation of 2×2 supercells (Fig.3). More detailed results will be shown and the photovoltaic behavior of the Cu2-xTe precipitates will also be discussed.

 

References:

[1] K.D.Dobson, et al, Stability of CdTe/CdS thin-film solar cells, Solar Energy Materials & Solar Cells, 62, 295 (2000)

[2] S.H.Demtsu, et al, Cu-related recombinations in CdS/CdTe solar cells, thin solid films, 516, 2251 (2008)

[3] This research was supported by the US DOE, Office of Energy Efficiency and Renewable Energy (F-PACE, DE-FOA-0000492), (CL, NP, YFY, SJP), the Office of DOE-BES, Materials Science and Engineering Division (ARL). The EDX Research was sponsored in part by the UK EPSRC through the UK National Facility for Aberration-Corrected STEM (SuperSTEM) (TJP, SJH).  


Chen LI (Vienna, Austria), Timothy J. PENNYCOOK, Sarah HAIGH, Andrew LUPINI, Naba PAUDEL, Yanfa YAN, Stephen PENNYCOOK
15:15 - 15:30 #6829 - MS05-OP275 Investigation of the heterojunction morphology in donor/acceptor stacks by energy filtered transmission electron microscopy.
Investigation of the heterojunction morphology in donor/acceptor stacks by energy filtered transmission electron microscopy.

One challenge in the development of efficient organic photovoltaic devices (OPVs) is the optimization of the donor/acceptor(D/A) interface morphology, as this has tremendous impact on the electrical transport properties. In an optimized absorber layer morphology, excitons should be generated always in close proximity to the D/A interface to reach it within their lifetime, where theydissociate into free charge carriers [1-3]. In OPVs however the free charge carriers exhibit a small mobility which requires short pathways towards the electrodes to prevent recombination. Substrate temperature during deposition as well as surface chemistry are important process parameters [4-7]. In this respect alternating D/A layers are promising candidates for an optimized active layer morphology [8-10].

In this contribution we present results obtained from a stack assembly of three Zn-Phtalocyanine/C60 layer (3 nm/3 nm nominal thickness) pairs (for further details of the preparation see [11]). The complete OPV device is shown in Fig. 1. The morphology of the individual D/A layers was investigated after each deposition step of ZnPc or C60, respectively. For this, energy filtered electron transmission microscopy in a Zeiss LIBRA 200 FE operated at 80 kV was used. In order to be able to investigate the same area after each deposition step, a special finder TEM grid, coated with a graphene monolayer was used. Zero-loss filtered images were acquired with an energy filter slit width of 10 eV. In Fig. 2 we show images which where obtained after the first, second and third deposition, respectively (deposition at room temperature (RT)). The first image (Fig. 2a) shows that the ZnPc film is not closed, but islands have formed. The same can be observed for the successive C60 layer (Fig. 2b). However, the latter agglomeration is stronger, thus larger clusters are formed, indicating a higher surface mobility of C60. In the further course of the deposition steps (not shown) the contrast between image features of the first two layers decreases. This indicates that the successive deposition steps lead to closed films. Such a morphology is unfavorable as there are limited percolation paths from the different interfaces towards the respective electrodes. The morphology in the layer stack changes substantially when the substrate temperature is increased to 80 °C. Figure 3 shows the corresponding morphologies after the 1st, 2nd and 3rd deposition step, respectively. In contrast to the experiment at RT agglomeration is observed in all following layers. In order to investigate the inter-layer links the morphology in layer n was visualized by calculating the difference image dn = Imagen – Imagen-1. The result for the first six layers is also depicted in Fig. 3. We observe a high porosity and a well established crosslinking between the ZnPc on the one hand and the C60 layers on the other. These morphology results in an improved efficiency of η=2.1 % compared to η=0.5 % for the device deposited at RT.

References:

[1] B. Johnev, M. Vogel, K. Fostiropoulos, B. Mertesacker, M. Rusu, M.-C. Lux-Steiner, A. Weidinger, Thin Solid Films, vol. 488, no. 1, pp. 270 – 273 (2005).

[2] S. Senthilarasu, S. Velumani, R. Sathyamoorthy, A. Subbarayan, J.A. Ascencio, G. Canizal, P.J. Sebastian, J.A. Chavez, and R. Perez, Appl. Phys. A, 77:383 – 389 (2003).

[3] B. P. Rand, D. Cheyns, K. Vasseur, N. C. Giebink, S. Mothy, Y. Yi, V. Coropceanu, D. Beljonne, J. Cornil, J. L. Bredas, J. Genoe, Adv. Func. Mater., 22:2987–2995 (2012).

[4] K. Fostiropoulos, W. Schindler, Phys. Status Solidi B246, 2840 – 2843 (2009).

[5] A. F. Bartelt, C. Strothkämper, W. Schindler, K. Fostiropoulos, R. Eichberger, Appl. Phys. Lett. 99, 143304 (2011).

[6] S. Pfuetzner, J. Meiss, A. Petrich, M. Riebe, K. Leo, Appl. Phys. Lett. 94, 253303 (2009).

[7] P. Peumans, A. Yakimov, and S.R. Forrest, J. Appl. Phys., 93(7), 3693–3723 (2003).

[8] J. Xue, B. P. Rand, S. Uchida, and S.R. Forrest, J. App. Phys., 98(12):124903 (2005).

[9] B. P. Rand, J. Xue, S. Uchida, and S. R. Forrest, J. Appl. Phys., 98, 124902 (2005).

[10] Z. R. Hong, B. Maenning, R. Lessmann, M. Pfeiffer, and K. Leo, Appl. Phys. Lett. 90, 203505 (2007).

[11] G. Chouliaras, W. Schindler, M. Wollgarten, M. Ch. Lux-Steiner, K. Fostiropoulos, submitted.


Georgios CHOULIARAS, Markus WOLLGARTEN (Berlin, Germany), Wolfram SCHINDLER, Konstantinos FOSTIROPOULOS
15:30 - 15:45 #5888 - MS05-OP266 Design and characterization of mesopores in photocatalytically active oxynitride single crystals using structural and chemical TEM analysis.
Design and characterization of mesopores in photocatalytically active oxynitride single crystals using structural and chemical TEM analysis.

Mesoporous single crystals have been a matter of intense discussion in the last years in the context of solar energy harvesting, since it is expected that this material class can contribute significantly to the improved design of highly efficient solar energy conversion devices [1]. Especially for photocatalytic or photoelectrochemical hydrogen generation high surface area and good charge-transport properties are key features to enhanced device performance [2, 3]. Good conductivity is usually obtained in large defect free structures such as single crystalline materials, where consequently the surface area is small. High surface area, however, is obtained best by porous agglomerates of nanoparticles, where the conductivity is low because of multiple grain boundaries. The possibility to achieve performance improvement by combining both concepts has been demonstrated via the fabrication of large single crystals on the micrometer scale with a mesoporous structure using a template based approach [4]. In comparison to nanocrystalline materials, the improved charge carrier conductivity has been shown in this material class as well as its competitive surface area. Moreover, other template-free synthesis routes are known, where porous structures in solids are formed spontaneously. One example is the solid-gas phase reaction carried out for the synthesis of oxynitrides, i.e. thermal ammonolysis [5]. However, the control of pore size and density requires a detailed understanding of the reaction mechanisms during synthesis.  

Some of these oxynitride materials i.e. LaTiO2N (LTON) or LaTaON2 are photocatalytically active [6-8]. The main characterization techniques used to evaluate the pore quantity and quality have been powder techniques (for example physisorption), giving information about the open porosity, and qualitative scanning electron microscopy (SEM) and transmission electron microscopy (TEM), which suggested that open and closed pores are formed [6-8]. However, little is known about the size and shape distribution especially of the closed porosity or about the pore formation process.

In this contribution we will focus on microscopic pore characterization of LTON as a function of the synthesis method by combining several TEM techniques (Figure 1, 2) [9,10]. The pores themselves were explored mainly by electron tomography and by scanning TEM (STEM) with an high angle annular dark field (HAADF) detector, while the crystallinity was investigated using a combination of high resolution transmission electron microscopy (HREM), selected area diffraction (SAD) and nanobeam diffraction. The local chemical composition was studied by electron energy loss spectroscopy. With the improved understanding of the pore formation mechanism in LTON we enabled porosity tuning in large oxynitride single crystals leading to enhanced performance in photocatalytic and photoelectrochemical water-splitting.

[1]          C. Ducati, Nature 495 (2013) 180-181.

[2]          T. Hisatomi, J. Kubota and K. Domen, Chem. Soc. Rev., 43 (2014) 7520-7535.

[3]          A. Kay, I. Cesar and M. Grätzel, J. Am. Chem. Soc., 128 (2006) 15714-15721.

[4]          E.J.W. Crossland, N. Noel, V. Sivaram, T. Leijtens, J.A. Alexander-Webber, and H.J. Snaith, Nature,

              495 (2013) 215-219.

[5]          S.G. Ebbinghaus, H.-P. Abicht, R. Dronskowski, T. Müller, A. Reller and A. Weidenkaff,

              Prog. Solid State Chem., 37 (2009) 173-205.

[6]          A.E. Maegli, S. Pokrant, T. Hisatomi, M. Trottmann, K. Domen, and A. Weidenkaff, J. Phys. Chem. C,

              118 (2014) 16344-16351.

[7]          T. Takata, C. Pan and K. Domen, ChemElectroChem, 3 (2016) 31-37.

[8]          N.-Y. Park and Y.-I. Kim, J. Mater. Sci., 47 (2012) 5333-5340.

[9]          S. Pokrant, M.C. Cheynet, S. Irsen, A.E. Maegli and R. Erni, J. Phys. Chem. C, 118 (2014)

              20940-20947.

[10]        S. Pokrant, S. Dilger and S. Landmann, J. Mater. Sci., (2016) DOI: http://dx.doi.org/10.1557/jmr.2016.9

Acknowledgements: The authors thank the SNSF for the PrecoR grant 20PC21_155667.


Simone POKRANT (Dübendorf, Switzerland), Stefan DILGER, Steve LANDSMANN
Salle Gratte Ciel 1&2

"Friday 02 September"

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IM7-II
13:45 - 15:45

IM7: Phase Microscopies
SLOT II

Chairpersons: David COOPER (Engineer) (Chairperson, Grenobles, France), Christoph KOCH (Professor) (Chairperson, Berlin, Germany)
13:45 - 14:15 #8361 - IM07-S52 A closer look at high-resolution electron holography.
A closer look at high-resolution electron holography.

In the recent years high-resolution off-axis electron holography made huge advancements. Electron microscopes with increased numbers of electron optical biprisms and electron lenses allow more flexible ray paths. Due to the combination of double biprism holography and higher magnification at the lower biprism, holograms in the high resolution regime are now recorded with negligible artifacts [1]. Furthermore, smart averaging schemes for hologram series allow to prolong the effective exposure time for a hologram to time scales, where the experimental errors are not dominated by the shot noise anymore [2].

 

One of the advantages of holography is the posterior correction of residual aberrations. However, the aberrations still have to be sufficiently known. By quantitative comparison of reconstructed wave functions with calculations the imaging parameters can be retrieved with sufficient precision allowing the reconstruction of aberration corrected exit-wave functions. Thus nowadays holograms with (sub-)angstrom resolution can be obtained on a regular basis.

 

In off-axis holography only the side-band channel of the information recorded in the hologram is reconstructed. As hologram series are recorded and the reconstructed wave function can be propagated to arbitrary defocus values anyway, also focal series of conventional images (center-band) can be obtained in the same measurement.

 

In the figures the reconstructed exit waves of a GaAs wedge, obtained by inline and off-axis holography are shown [3, 4]. While differences in the low-frequency reconstruction are expected, also significant differences in thicker specimen parts are found. The latter can be easily recognized on the left side of the linescan profiles, where the amplitudes signals at the columns positions exhibit different behaviours. There are several possible reasons for this discrepancy. The numerical inversion of the imaging process within the inline method becomes worse conditioned since the thicker parts exhibit stronger non-linear imaging. Thus the reconstruction algorithm might converge in a wrong minimum of the overall error figure. Also, any changes of the object during the acquisition of the series will exhibit different behaviour in the measurement. Furthermore, both channels (side-band and center-band) refer to different parts of the density matrix due to the different quantum-mechanical nature of the underlying interference experiment.

 

[1] F. Genz et al., Ultramicroscopy 147 (2014) 33

[2] T. Niermann et al., Micron 63 (2014) 28

[3] T. Niermann et al., J. Phys. D: Appl. Phys. 49 (2016) 194002

[4] The FEI TrueImage software packages was used for inline reconstruction.


Tore NIERMANN (Berlin, Germany), Michael LEHMANN
Invited
14:15 - 14:30 #6940 - IM07-OP137 Long-range focal series reconstruction in the TEM.
Long-range focal series reconstruction in the TEM.

Focal series wave reconstruction in the Transmission Electron Microscope (TEM) is a well established holographic technique employed in both the medium and atomic resolution regime to study electric, magnetic and strain fields in solids as well as atomic configurations at crystal defects or grain boundaries. Focal series reconstruction does not require an undisturbed reference wave as off-axis holography and may be conducted under relaxed partial coherence provided that the latter is well-behaved and well-known in advance [1]. Moreover, focal series holography may be considered as an instance of the more general quantum state tomography (see Fig. 1) that is successfully employed to study mixed (i.e., incoherent) quantum states of matter (e.g., atoms) and light [2].
These advantages are opposed by ambiguities in the reconstructed wave function, e.g., due to inconsistent and incomplete focal series data. In reality every focal series is inconsistent, e.g., due to the presence of partial coherence, shot and detector noise, as well as geometric and chromatic aberrations depending on the defocus. Similarly, every focal series is incomplete because of a limited number of foci, typically limited to the near field regime, and the restriction to isotropic foci, where astigmatic foci are necessary to provide a dataset allowing for an unabiguous reconstruction of an underlying wave function [3]. For instance, the problematic reconstruction of low spatial frequencies can be traced back to missing focal series data in the far field.
Here, we elaborate on focal series reconstruction from the perspective of quantum state tomography and use the obtained results to increase the scope of the technique in terms of convergence and uniqueness in particular for low spatial frequencies. Moreover, we explain a number of previous results by exploiting the above analogy, and open pathways to further improvements.
We particularly report on the recording, preprocessing, calibration and reconstruction of a long range focal series ranging from the near to the far field in a TEM. We calibrate the focal series, including the effective defocus and magnification, by a careful calibration of the proportionality between squared current and reziprocal focal length in a magnetic lens. We derive non-linear focal sampling schemes from the phase space analogy. Subsequently, we adapt a modified Gerchberg-Saxton algorithm to the long range focal series by exploiting the link to randomized Kaczmarz (ART) algorithm used in tomography [4]. We use different numerical propagation regimes in the near and far field to take into account the scaling of the wave function and overcome convergence problems by replacing the Kaczmarz iteration with the Landweber (SIRT) iteration as proposed by Allen et al.. [5]. To overcome remaining ambiguities in the reconstruction (e.g, pertaining to a different starting guess in the Gerchberg-Saxton algorithm) resulting from inconsistencies in combination with the non-convex nature of the set of wave functions possessing the same modulus, we discuss several additional constraints such imposed by the topology of the starting guess [6].
To illustrate the above reconstruction principles, we perform a case study on a higher-order vortex beam with topological charge (winding number) 3 truncated by a square aperture (Fig. 2). The beam possesses a non-trivial topology by design, which is nicely suited to discuss the impact of (implicit) topology constraints, rotation alignment as well as other issues.

[1] Koch, C. T., Micron, 2014, 63, 69-75
[2] Schleich, W. P., Quantum Optics in Phase Space, Wiley VCH, 2001
[3] Lubk, A. & Röder, F., Phys. Rev. A, 2015, 92, 033844
[4] Natterer, F., Wübbeling, F., Mathematical Methods in Image Reconstruction,SIAM, 2001
[5] Allen, L. J.; McBride, W.; O'Leary, N. L.,Oxley, M. P., Ultramicroscopy, 2004, 100, 91-104
[6] Martin, A. & Allen, L., Optics Communications, 2007, 277, 288-294
[7] Financial support by the DIP programme of the DFG is greatly acknowledged.


Axel LUBK (Dresden, Germany), Karin VOGEL, Daniel WOLF, Falk RÖDER, Laura CLARK, Jo VERBEECK
14:30 - 14:45 #5921 - IM07-OP130 Superresolution and depth sensitivity in HRTEM through structured illumination.
Superresolution and depth sensitivity in HRTEM through structured illumination.

In the weak phase object approximation the wave function in the objective lens’ back focal plane is a convolution of the illuminating wave, ψin, with the projected potential, V, multiplied with the coherent transfer function, H, i.e. ( ψin * ( 1 + σV ) ) H, with σ the interaction constant and * the convolution operator. Therefore, frequencies from above the cutoff-frequency in H’s objective aperture enter the image formation in aliased form, as is illustrated in Fig. 1a. In this abstract, fully dynamical multislice simulations are carried out to investigate if these higher frequencies can be disentangled and superresolution can be achieved.

Simulations of [112] Si are set up with FDES [1], the supercell is 5.12 nm by 5.12 nm wide and is 5 nm thick on the left side and 2.5 nm on the right-hand side. The in-plane sampling distance and the slice thicknesses were set to 0.01 nm. Si in the [112] direction displays dumbbells that are 0.075 nm apart, corresponding to a spatial frequency of 13.3 nm-1 or 33.4 mrad at an acceleration voltage of 200 kV. The imaging is done with illumination that is structured to have random-but-known phases and that is bandwidth limited to 20 mrad, see Fig. 1b and Fig. 2a. The objective lens behind the sample is set to Scherzer conditions with an objective aperture of 20 mrad, a defocus of -18.8 nm and a spherical aberration of 94.0 µm, thus yielding a point resolution of 0.125 nm that is clearly insufficient for resolving the dumbbells. Eight images are recorded with the simulation shifted by 0.27 nm between consecutive recordings; the first image is shown in Fig. 2b, the others look similar.

A three-dimensional reconstruction was set up in IDES [2,3] with three slices 2.5 nm apart and a pixel size of 0.01 nm; amplitude and phase of the impinging wave and the settings of the objective lens were assumed known. Multiple scattering was accounted for by propagating the wave between slices with the Fresnel propagator. A Polak-Ribière conjugate gradient search was used to minimize an error function that was chosen as the sum of absolute differences between measurement and corresponding data simulated from the current object estimate. Contrary to [2,3] no sparse regularization has been applied. In Fig. 3a the middle slice of the reconstruction is shown, displaying a clear separation of the Si-dumbbells. Furthermore, the lower slice displayed in Fig. 3b shows that depth sensitivity with a resolution of at least 2.5 nm is achieved as the right-hand side, which by construction does not contain any atoms in its lower half, indeed does not display any. [4]

[1] W. Van den Broek, et al. “FDES, a GPU-based multislice algorithm with increased efficiency of the computation of the projected potential.” Ultramicroscopy 158 (2015), pp. 89–97.
[2] W. Van den Broek and C.T. Koch. “Method for retrieval of the three-dimensional object potential by inversion of dynamical electron scattering.” Phys. Rev. Lett. 109 (2012), p. 245502.
[3] W. Van den Broek and C.T. Koch. “General framework for quantitative three-dimensional reconstruction from arbitrary detection geometries in TEM.” Phys. Rev. B 87 (2013), p. 184108.
[4] The Carl Zeiss Foundation is gratefully acknowledged by all authors. C.T. Koch also acknowledges the DFG (KO 2911/7-1).


Wouter VAN DEN BROEK (Berlin, Germany), Christoph T. KOCH
14:45 - 15:00 #5023 - IM07-OP126 Towards understanding of charging effects of thin-film phase plates.
Towards understanding of charging effects of thin-film phase plates.

In the past few years, physical phase plates (PP) have become a viable tool to enhance the contrast of weak-phase objects in transmission electron microscopy (TEM). Here we focus on thin-film PPs where the mean inner potential is exploited to impose a phase shift on electrons propagating through the PP [1]. The application of thin-film PPs is hampered by deviations of the phase shift from its desired value which occur due to charging of the thin film. Our experimental approach to overcome charging of thin-film PPs was using the metallic glass alloy Pd77.5Cu6.0Si16.5 (PCS) with a high specific conductivity of 1.18×106 S/m [2] as PP material. However, Hilbert PPs fabricated from thin PCS films nevertheless show pronounced distortions of the Thon-ring system during illumination with 200 keV electrons. These observations initiated the development of a theoretical model to obtain an improved understanding of charging, which is presented in this work.

 

Charging is described by assuming a charge-dipole layer to be present at the PP. A possible source for such a dipole layer could be an insulating contamination layer on top of the PCS film in the illuminated PP region which could capture and fix low-energy secondary electrons generated by the primary electrons in the PCS film. Together with its positive mirror charge in the grounded electrically conducting PCS film this fixed charge would form a dipole layer. The dipole strength is assumed to be proportional to the current density distribution in the back focal plane which can be qualitatively obtained from a diffraction pattern. The proportionality factor for the dipole strength is a fit parameter denoted as phase mask amplitude in the following.

 

As a test of our model we compare power spectra obtained from an experimental image of an amorphous carbon (aC) thin-film test object with a simulation based on our model. The experimental reference image was obtained by using a PCS film-based Hilbert PP installed in the back focal plane of a Philips CM 200 FEG/ST transmission electron microscope. In the simulation we assume the Hilbert PP to be illuminated by the current density distribution given by the diffraction pattern and calculate the phase shift in the back focal plane. The resulting dipole strength distribution is then fed into an image simulation procedure which yields simulated power spectra as a function of the phase mask amplitude. The latter is optimized by a comparison with the experimental reference. The experimental reference and calculated power spectra are compared pixel by pixel. The sum of all pixel comparisons belonging to one pair of power spectra serves as measure of agreement, which is plotted for different phase mask amplitudes in Figure 1 for the region below the cut-on frequency. Best agreement of almost 75% is obtained. This is remarkable taking into account that experimental and simulated spectra (based on noisy input for the illumination data) contain noise.

 

Figure 2 shows a montage of a simulated and experimental power spectrum. Two regions, below and above the cut-on frequency, can be distinguished in the power spectra. The cut-on frequency is given by the distance between the PP edge and the zero-order beam and is marked by vertical white lines. Note the good agreement between experimental and simulated spectra, especially below the cut-on frequency.

 

Overall our method seems to be a promising approach to analyze and explain phase shift distortions due to charging in thin-film PP applications.

 

[1] R. Danev and K. Nagayama, J. Phys. Soc. Jpn. 73 (2004), p. 2718.

[2] B. Chelluri and R. Kirchheim, J. Non-cryst. Solids 54 (1983), p. 107.

[3] Financial support by the Deutsche Forschungsgemeinschaft (DFG).


Roland JANZEN (Karlsruhe, Germany), Jonas SCHUNDELMEIER, Simon HETTLER, Manuel DRIES, Dagmar GERTHSEN
15:00 - 15:15 #6017 - IM07-OP132 Quantitative comparison of phase contrast imaging in conventional TEM focal series and STEM ptychography.
Quantitative comparison of phase contrast imaging in conventional TEM focal series and STEM ptychography.

 In phase contrast imaging, three-dimensional, quantitative information about the specimen is encoded in the object wave function, which results from the scattering of the electron wave with the specimen potential. For weak scattering materials, such as a mono-atomic layer of graphene, the phase of the object wave contains all the structural information. However, this phase information is lost in the image recording process. In order to recover the phase, a variety of numerical reconstruction methods are available, including off-axis electron holography [1], focal series reconstruction (FSR) [2] and ptychography [3]. To understand quantitatively materials’ properties, matching of experimental phases to simulations is required. In practice, the quantitative information that is obtained from the experimental object wave is often in disagreement with simulations, even for the simple case of a mono-atomic layer of graphene. This disagreement is a phase mismatch, that resembles the contrast mismatch, or Stobbs factor, [4] found between images and simulations.

 In this contribution, we focus on a comparison between conventional focal series phase restoration in transmission electron microscopy (TEM) and ptychographic phase restoration in scanning transmission electron microscopy (STEM) for the simple case of graphene. These techniques provide two independent measurements of the phase of a monolayer, which we subsequently compare to explore the physical meaning of the restored object wave phase. Figure 1 shows the restored phase from a conventional focal series reconstruction (a) and from a ptychography reconstruction (b). The focal series was recorded using an aberration corrected JEOL 2200MCO equipped with an in-column Omega-type energy filter, while the ptychography data set was acquired in a probe corrected JEOL ARM200CF fitted with a direct electron pixelated detector from PNDetector. The detector has an array of 264x264 pixels and can achieve a speed of up to 20,000 fps through binning/windowing. The focal series and ptycographic reconstructions are based on Wiener filter [5] and Wigner distribution deconvolution [6] algorithms, respectively. Following both restorations, the range of recovered phases is compared for the two methods. The theoretical phase of the object function is also determined for both cases by performing multislice frozen phonon calculations and reproducing, step by step the experimental restoration procedures. The preliminary results of these calculations are shown in Figure 2 for the TEM case. Without introducing any unknown fitting parameters in the simulations, the mismatch between the calculated and experimental phases is found to be 1.7.

 The experimental comparison with the ptycographic simulations, and those for FSR recorded at elevated temperatures, will be further discussed to show the influence of thermal motion on the restored object wave, as well as the effects of using zero-loss filtered images to exclude inelastic scattering contributions [7].

 

References: 

[1] M. Lehmann et al., Ultramicroscopy 54 (1994) 335 – 344.

[2] W. M. J. Coene et al., Ultramicroscopy 64 (1996) 109 – 135.

[3] J. M. Rodenburg et al., Ultramicroscopy 48 (1993) 304 – 314.

[4] M. J. Hÿtch and W.M. Stobbs, Ultramicroscopy 53 (1994) 191 – 203.

[5] A. I. Kirkland et al. Ultramicroscopy 57 (1995) 355 – 374.

[6] J. M. Rodenburg and R. H. T. Bates, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 339 (1992) 521-553.

[7] A. Howie, Ultramicroscopy 98 (2004) 73 – 79.

[8] The authors acknowledge funding from the European Union Seventh Framework Programme under Grant Agreement 312483-ESTEEM2 (Integrated Infrastructure Initiative-I3) and from the EPSRC under grant number EP/M010708/1.


Emanuela LIBERTI (Oxford, United Kingdom), Hao YANG, Gerardo MARTINEZ, Peter NELLIST, Angus KIRKLAND
15:15 - 15:30 #6136 - IM07-OP133 Study on the robustness of electron ptychography for phase imaging in the STEM using fast pixelated detectors.
Study on the robustness of electron ptychography for phase imaging in the STEM using fast pixelated detectors.

The use of electron ptychography methods for phase imaging in the scanning transmission electron microscope (STEM) have gained renewed interest due to the recent developments of fast pixelated detectors. One of those being the pnCCD (S)TEM camera [1] developed by PNSensor and PNDetector, it allows the recording of a 4D-dataset that consists of the full convergent beam electron diffraction pattern for each probe position that is scanned over the sample. This dataset contains all the scattering information generated by the electron sample interaction in the STEM experiment. The technique has allowed improved resolution beyond conventional limits [2] and phase contrast imaging at atomic resolution of different materials [3, 4]. In combination with other STEM techniques, it enables imaging of heavy and light elements of radiation-sensitive materials at the atomic scale [4].

In this work, we present an analysis and discussion of two different phase reconstruction algorithms, such as the Single Side Band (SSB) [3, 5, 6] and the Wigner-Distribution Deconvolution (WDD) [7] methods, in terms of their robustness to dynamical effects. The main difference of both methods is that the phase difference retrieved by the SSB method is still affected by the probe aberrations, meanwhile the WDD method allows to correct for this [4, 7].  However, in both cases a multiplicative interaction between the specimen function and the electron wave is assumed, which complicates the interpretation of the reconstructed wave when dynamical effects start to play a major role. Figures 1 and 2 show experimental results of retrieving the modulus (a) and the phase difference (b) of a gold nanoparticle measured with the pnCCD (S)TEM camera and using the discussed ptychography methods. It can be observed that by correcting the probe aberrations [3] while using the WDD method, the quality of the reconstructed image is dramatically improved. Moreover, a ring-like shape of the reconstructed phase difference for some atomic columns is observed. This behavior is studied in detail by image simulations (c) and discussed in terms of how dynamical effects influence the reconstruction algorithm. Furthermore, we explore the comparison of this method with other phase imaging techniques.

[1] H. Ryll, M. Simson, R. Hartmann, P.Holl, M. Huth, S. Ihle, Y. Kondo, P. Kotula, A. Liebel, K. Müller-Caspary, A. Rosenauer, R. Sagawa, J. Schmidt, H. Soltau, L. Strüder, manuscript accepted at Journal of Instrumentation

[2] P.D. Nellist, B.C. McCallum and J.M. Rodenburg, Nature 374 (1995) 630-632.

[3] T. J. Pennycook, A. R. Lupini, H. Yang, M. F. Murfitt, L. Jones, P. D. Nellist, Ultramicroscopy 151 (2015) 160 – 167.

[4] H Yang, R.N. Rutte, L. Jones, M. Simson, R. Sagawa, H. Ryll, M. Huth, T.J. Pennycook, H. Soltau, Y. Kondo, B.D. Davis, P.D. Nellist,  manuscript submitted.

[5] J. M. Rodenburg, B. C. McCallum, P. D. Nellist, Ultramicroscopy 48 (1993) 304 – 314.

[6] H. Yang, T. J. Pennycook, P. D. Nellist, Ultramicroscopy 151 (2015) 232 – 239.

[7] J. M. Rodenburg and R. H. Bates, Phil. Trans. R. Soc. Lond. A. 339 (1992) 521 – 553.

 

Acknowledgement

The research leading to these results has received funding from the EPSRC (EP/M010708/1).


Gerardo T MARTINEZ (Oxford, United Kingdom), Hao YANG, Lewys JONES, Martin SIMSON, Martin HUTH, Heike SOLTAU, Lothar STRÜDER, Ryuusuke SAGAWA, Yukihito KONDO, Peter D NELLIST
15:30 - 15:45 #5952 - IM07-OP131 Zorro: multi-reference dose-fractionated image registration.
Zorro: multi-reference dose-fractionated image registration.

    The technique of single-particle analysis (SPA) in cryo-TEM has recently been revolutionized by the simultaneous introduction of direct electron detectors (DEDs) and maximum likelihood, reference-free reconstruction tools such as Relion [S. Scheres] and Bayesian refinement tools such as Frealign [N. Grigorieff]. CMOS DEDs have much better DQE than scintillator-coupled CCDs and fast read-out permits collection of dose-fractionated image stacks which can be effectively drift-corrected. SPA is essentially an ensemble-average in-line holography technique.  Particles (i.e. proteins) are embedded in a vitreous ice matrix, such that they have random projections. Many micrographs are recorded at various defocus values (typically 1.0 – 2.5 µm). With sufficient particle projections recorded (typically 50k-500k), it is possible to estimate orientations of the particles by maximum likelihood iterative refinement and reconstruct the 3-D volume via back-projection using the central projection theorem. 

    Proteins are highly radiation sensitive (critical dose ~20 e-2 = 0.03 C/cm2) therefore useful per-frame dose is in the range 0.5 – 2 e-2. Ice films are viscous and thought to be semi-insulating under electron illumination. High, charged-driven drift rates are observed (x10 compared to hard specimens on carbon). Radiation damage and non-rigid particle motion results in rapid decay of correlation information amongst frames. In addition, DED’s gain reference change quickly due to radiation damage, such that correlated noise is often greater than the correlated signal.

    We will present Zorro, a new drift registration package, to be open-sourced (github.com/C-CINA/zorro) in the near-future after publication. Zorro takes a similar multiple reference approach as Motioncorr [Y. Cheng], in that it overcomes noise by cross-correlating each frame to ~10 frames of similar dose, resulting in an over-determined set of image shifts.  In Zorro the error amongst image shifts is optimized by a global-minimizer, the Basin hopping algorithm.  The individual correlations are logistic-weighted in the minimizer, based on the statistical significance of the correlation peak compared to the background noise. To deconvolve the impact of correlated noise shared between frames, a masked intensity-normalized cross-correlation (MNXC) is used. The MNXC algorithm also deconvolves non-uniform ice thickness and illumination. 

    A test specimen of urease particles are shown in Fig. 1 with (top) single frames with dose 0.3 e-2 and (bottom) the aligned sum of 60 frames. The set of correlations can be represented by an upper triangular matrix (Fig. 2), where the diagonal represents the frame number and the horizontal the adjacent cross-correlation maxima. The correlations rapidly drop to the noise level after the adjacency exceeds  frames due to non-rigid particle motion and radiation damage. Registration success at low-resolution may be assessed by independently registering the even- and odd-numbered frames, and calculating the cross-correlation between the independent halves. The normalized, rotationally averaged correlation, known as the Fourier Ring Correlation (FRC), is shown in Fig.3 for a small (145 kDa) protein. FRC oscillations are due to defocus.

    Zorro is a general-purpose algorithm without technique-specific heuristics.  Here we show it applied to dose-fractionated HAADF-STEM.  Shown in Fig. 4, a (top) rapid-scan rate with 100 ns dwell can be combined with dose-fractionation to (bottom) dampen scan errors in the sum.

 

Acknowledgements: Julia Kowal recorded the image used for the FRC in Fig. 3.  Kenneth Goldie and Ariane Fecteau-Lefebvre are thanked for maintaining the TEM instruments.


Robert MCLEOD (Basel, Switzerland), Benedikt HAAS, Henning STAHLBERG
15:45 - 16:00 #6399 - IM07-OP135 Quantitative phase imaging with using orientation-independent differential interference contrast (OI-DIC) microscopy.
Quantitative phase imaging with using orientation-independent differential interference contrast (OI-DIC) microscopy.

Conventional differential interference contrast (DIC) microscope shows the two-dimensional distribution of optical phase gradient encountered along the shear direction between two interfering beams. Therefore, contrast of DIC images varies proportionally to cosine of the angle made by azimuth of the phase gradient and the direction of wavefront shear. The image contrast also depends on the initial phase difference (bias) between the interfering beams. To overcome the limitations of DIC systems, we have developed a quantitative orientation-independent differential interference contrast (OI-DIC) microscope, which allows the bias to be modulated and shear directions to be switched rapidly without mechanically rotating the specimen or the prisms [1]. A set of raw DIC images with orthogonal shear directions and different biases is captured within a second. Specialized software computes the phase gradient vector map and then the quantitative phase image.

The new OI-DIC beam-shearing assembly is shown in Fig.1. It consists of two standard DIC prisms with a liquid crystal 90º polarization rotator in between. The shear plane of the first prism DIC1 is oriented at 0º, and the shear plane of the second prism DIC2 is oriented at 90º. Another liquid crystal cell works as a phase shifter, which modulates the bias. Its principal plane is oriented at 0º. We employed a twisted-nematic liquid crystal cell as 90º rotator and an untwisted nematic cell as phase shifter. The OI-DIC technique can use any high-NA objective lens at the full aperture and provides an optical path length (OPL) or phase map with the highest resolution. Unlike other phase mapping techniques, the OI-DIC does not require phase unwrapping and calibration. The OI-DIC can also be combined with other imaging modalities such as fluorescence and polarization.

An example of the computed OPL gradient map is shown in Fig. 2. The image displays a 4-µm thick glass rod that is embedded in immersion liquid with refractive index 1.47. The image brightness is linearly proportional to OPL gradient magnitude. White level corresponds to gradient magnitude 200 nm/nm. The hue depicts the gradient direction, as it is illustrated by the color wheel in the left bottom corner. We used microscope Olympus BX61 equipped with objective lens UPlanSApo 100x/1.40 Oil.

The obtained OPL gradient map was processed by Fourier integration to compute the OPL (phase) map, which is represented in Fig. 3. The image brightness is linearly proportional to OPL and phase. White corresponds to 500nm (OPL) and 5.75rad (phase) at wavelength λ=546 nm.

Fig.4 displays cross-sections of the OPL and phase maps of 4-µm thick glass rods in immersion liquids with the refractive indices 1.47 (red curve), 1.51 (orange curve), 1.54 (blue curve), 1.56 (violet curve), and 1.58 (green curve). Refractive index of the glass is 1.56. An extremum OPL is determined by formula:

OPL=(nr -nim)d,

where nr  and nim are refractive indices of rod and immersion, respectively, d is diameter of the rod. As one can see, the OPL maxima and minimum are practically equal to the theoretical values 360nm, 200nm, 80nm, 0nm, and -80nm.

The OI-DIC assemblies fit into existing slots of a regular research grade microscope. We confirmed that a microscope upgraded with the OI-DIC provides lateral resolution ~200 nm and axial resolution ~100 nm at wavelength 546 nm. The OPL noise level was ~0.5nm. According our best knowledge, the images with such high level of resolution cannot be produced by any other currently available interference and phase microscopy techniques.

Acknowledgements

This publication was made possible by Grant Number R01-GM101701 from the National Institute of General Medical Sciences, National Institutes of Health (USA). Its contents are solely the responsibility of the author and do not necessarily represent the official views of the National Institute of General Medical Sciences or the National Institutes of Health.

References:

[1] M. Shribak, “Quantitative orientation-independent DIC microscope with fast switching shear direction and bias modulation, ” The Journal of the Optical Society of America A, 30 (2013), p. 769-782.


Shribak MICHAEL (Woods Hole, USA)
Salle Tête d'or 1&2

"Friday 02 September"

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IM6-II
13:45 - 15:45

IM6: Quantitative Diffraction
SLOT II

Chairpersons: Tatiana GORELIK (Chairperson, Mainz, Germany), Damien JACOB (Chairperson, UMET, Lille, France)
13:45 - 14:15 #8769 - IM06-S48 Three-dimensional nanostructure determination from large diffraction dataset.
Three-dimensional nanostructure determination from large diffraction dataset.

  Electron tomography relies on mass-thickness contrast. However, chemically homogeneous nanostructures can not be studied using this technique. Nanocrystalline materials in general are structurally featured by a large density of grain boundaries and large surface/volume ratio, which have attracted significant interest for their unique mechanical, chemical and electronic properties.1-3 Transmission electron diffraction (TED) is an appropriate technique for complex nanostructure analysis because it is highly sensitive to local structure and it can be obtained using a small electron beam. 

  Previously we have developed a TEM based scanning electron nanodiffraction (SEND) technique that uses the built-in TEM deflection coils to shift the beam.Here, we report a new technique called 3D-SEND by coupling the SEND with diffraction tomography. This technique aims at determining the 3D morphologies and orientations of grains in nanocrystalline materials. A special holder design is employed for a high-angle (up to 87°) sample rotation.5 The design employs a needle-shape specimen and a sample rotation driven by the goniometer itself. Diffraction pattern recording and beam scanning are automated using a DigitalMicrograph® script to control the TEM deflection coils and camera readout.6 A stack of diffraction patterns are acquired for each sample rotation step.

  The reconstruction starts with the identification of 2D grain morphologies, using dark-field images generated with diffraction spots. Similar contrasts are grouped using the normalized cross-correlation. Diffraction spots belong to one grain are sorted into one diffraction pattern. Electron diffraction pattern indexing is achieved by a combination of diffraction peak search and peak indexing using both length and angle information. The tomographic reconstruction of the grain is performed using the algebraic reconstruction technique. We apply prior conditions concerning the sample outline and the damping of scattering intensity. A smoothed isosurface is created to illustrate the grain’s 3D morphology. The grain orientation is determined from the indexing results.

  We demonstrate the performance of 3D-SEND on a TiN thin-film nanocrystalline sample prepared by unbalanced magnetron sputtering. The FIB cut and lift-out was performed perpendicular to the growth direction. The sample was milled to a tip with a diameter of 200 nm. The beam was set to 7nm in FWHM. The scanning covered a 2626 pixels area and each step is 11nm. The sample was tilted over a range of ±85° with a step of 5°. In total 23660 DPs are recorded. Figure 1 shows the reconstruction results of seven major grains and their orientations. The reconstruction result is shown in Fig. 1. 

  The spatial resolution of this technique is ultimately limited by the electron probe size under the column approximation. For a JEOL 2100 TEM, we can form a probe with a FWHM of 2.3 nm using a 10 um condenser aperture in the CBD mode with alpha = 1. Compared with the alternative technique 3D-OMiTEM,7 3D-SEND has a better diffraction pattern resolution, a wider sample rotation range and a much lower electron dose. Our approach also grants a combinative study with other techniques such as atom-probe tomography and in-situ deformation. In the future, 3D-SEND may potentially be improved for the five-parameter characterization of grain boundaries.

References:

1.   E. Abe et al, Acta Materialia, 50(2002), p. 3845-3857.

2.   D. Wang et al, ACS Nano, 3(2009), p. 907-914.

3.   C. C. Koch et al, MRS Bulletin, 24(1999), p. 54-58.

4.   K. H. Kim et al, Micron, 71(2015), p. 39-45.

5.   S. Mao et al, Acta Materialia, 82(2015), p. 328-335.

6.   J. Tao et al, Physical Review Letters, 103(2009), p. 097202.

7.   H. H. Liu et al, Science, 332(2011), p. 833-834.

*We thank Prof. Huang of National Tsinghua University for providing the TiN sample and DOE BES DEFG02-01ER45923 support. 


Yifei MENG, Jian Min ZUO (Urbana, IL, USA)
Invited
14:15 - 14:30 #6606 - IM06-OP122 Soft matter, and the many flavours of diffraction tomography.
Soft matter, and the many flavours of diffraction tomography.

With the arrival in 2009 of diffraction tomography for crystal structure solution [1] of sub-micron sized crystals, there has been a renaissance in the application of electron diffraction, with diffraction tomography providing a relatively easy path to quantitative analysis of crystal structures, compared to more conventional electron diffraction approaches. The collection of diffraction tomography data occurs by tilting the crystal around an arbitrary axis, which runs counter to the traditional notions of electron diffraction from low index orientated zones. Given the success of the method, it has produced a series of derivative techniques on this theme, of collecting tomographic diffraction from around an arbitrary axis. Each of these methods comes with its strengths and weaknesses.

An investigation into the relative merits of the various diffraction tomography techniques, ADT[1], RED[2], EDT[3], Rotation method[4], MicroED[5]. With an emphasis on the application of the techniques for soft matter and radiation sensitive materials, such as organic and protein crystals. Evaluation of the nuances in data collection strategies, hardware requirements, specimen requirements, and optional components, will all be considered, with details of how they affect the experimental setup, data acquisition, and processing.

We will discuss the need for validation of structural models and the added difficulties presented in doing so with soft matter materials, often leading to the requirement of validation by additional techniques.

[1] E. Mugnaioli, T. Gorelik and U. Kolb, Ultramicroscopy 109 (2009), 758-765.
[2] D. Zhang, P. Oleynikov,, S. Hovmoller & X. Zou, Z. Kristallogr. Cryst. Mater., 225 (2010), 94-102.
[3] M. Gemmi, P. Oleynikov, Z. Kristallogr. 228 (2013), 51–58.
[4] I. Nederlof, E. van Genderen, Y.-W. Li & J. P. Abrahams,  Acta Cryst.  D69 (2013), 1223–1230.
[5] D. Shi, B. Nannenga, M.G. Iadanza and T. Gonen (2013), eLife – 2:e01345: 1 - 17.


Andy STEWART (Limerick, Ireland)
14:30 - 14:45 #6799 - IM06-OP125 First woven covalent organic framework solved using electron crystallography.
IM06-OP125 First woven covalent organic framework solved using electron crystallography.

Making fabric by weaving is known as one of the oldest and most enduring methods. Nevertheless such an important design concept still needs to be emulated in extended chemical structures. Linking molecules into weaving structures would be of a great help to create materials with exceptional mechanical properties and dynamics. For this purpose a woven covalent organic framework-505 (COF-505) has been synthesized using a designed strategy [1]. However, COF-505 is not well crystallized, which gives rise to a poorly resolved PXRD pattern. Therefore, approaches based on electron crystallography methods have been used. The structure of this COF has been solved by a combination of 3D electron diffraction tomography (3D EDT, [2]), high-resolution TEM imaging and structure modeling.

3D EDT dataset was collected from a single sub-micron crystal in a tilting range of –41.3° to +69.1°. The reconstructed 3D reciprocal lattice was identified as a C-centered orthorhombic Bravais lattice with the unit cell parameters of a = 18.9 Å, b = 21.3 Å, c = 30.8 Å, and V = 12399 Å3, which have been used to index reflections observed in both PXRD pattern and Fourier diffractograms of HRTEM images. The derived reflection conditions were summarized as hkl: h+k = 2n; hk0: h, k = 2n; h0l: h = 2n and 0kl: k = 2n, leading to five possible space groups (s.g.): Cm2a (39), Cc2a (41), Cmca (64), Cmma (67) and Ccca (68). Cm2a, Cmma and Ccca were excluded because their projected plane group symmetries along [1-10] do not coincide with those of the experimental HRTEM images (pgg). Furthermore, by performing Fourier analysis of the HRTEM images and imposing symmetry to the reflections, Cu(I) positions were determined from the reconstructed 3D potential map (Fig. 1). The structure of COF-505 was built in Materials Studio by putting Cu(PDB)2 units at copper positions and connecting them through biphenyl (reacted BZ) molecules. The chemical composition was determined by the elemental analysis, which indicated that the unit-cell framework is constructed by 8 Cu(PDB)2 and 16 biphenyl units (Fig. 2). However, symmetry operations of the s.g. Cmca require two PDB units connected to one copper onto a mirror plane perpendicular to the a–axis that is not the energetically favorable geometry. The final s.g. determined as Cc2a and was used to build and optimize a structure model. The PXRD pattern calculated from the model is consistent with the experimental pattern of activated COF-505.

 

Acknowledgements:

Grants from Swedish Research Council/VR (Y.M. and P.O.) and JEOL Ltd, Japan (P.O.); EXSELENT and 3DEM-Natur, Sweden (O.T.) and BK21Plus, Korea (O.T.).

 

References:

[1] Y. Liu, Y. Ma, Y. Zhao, X. Sun, F. Gandara, H. Furukawa, Z. Liu, H. Zhu, C. Zhu, K. Suenaga, P. Oleynikov, A. S. Alshammari, X. Zhang, O. Terasaki, O. M. Yaghi. Weaving of organic threads into a crystalline covalent organic framework. Science, 351 (2016) 365–369.

[2] M. Gemmi, P. Oleynikov. Scanning reciprocal space for solving unknown structures: energy filtered diffraction tomography and rotation diffraction tomography methods. Z. Krist. 228 (2013) 51–58.


Yuzhong LIU, Yanhang MA, Yingbo ZHAO, Peter OLEYNIKOV (Stockholm, Sweden), Osamu TERASAKI, Omar YAGHI
14:45 - 15:00 #6316 - IM06-OP119 Structure solution of the complex γ-La6W2O15.
Structure solution of the complex γ-La6W2O15.

Oxides in the Ln2O3-MO3 (M = Mo and W) system are of significant technological interest for their laser applications [1], ionic conduction [2], catalytic [3] and ferroelectric [4] properties. The La2O3-WO3 phase diagram has been studied by a number of groups [5-7], but little detailed crystallographic information was reported due to the lack of good single crystals. Some of the reported compositions have not been appropriately characterized. Recently, the structures of La2WO6, La18W10O57 and La10W2O21 were solved using X-ray powder diffraction (XRPD) [8-10].

 

For the La6W2O15 compound phase transitions at 630 and 930 °C have been reported [1-3]. The structure of the high temperature phase α-La6W2O15 was determined ab-initio by XRPD [11]. The lower-temperature forms β and γ, however, couldn’t be determined due to the large number of reflections in the X-ray powder diffraction pattern and the relatively low symmetry of the system. The existing literature on γ-La6W2O15 only relates two sets of unit cell parameters [5-6], that almost match the XRPD pattern of γ-La6W2O15, but some weak peaks remain without indexation and can’t be explained by the presence of any impurity.

 

Here we present the structure solution using transmission electron microscopy of the complex structure of γ-La6W2O15. From zone axis precession electron diffraction the unit cell was determined to be monoclinic with cell parameters a=1.57 nm, b=1.21 nm, c=1.57 nm, β=110°. As an example, the [100] zone axis is presented on figure 1. Due to the low symmetry of the crystal system and the large unit cell, a huge number of reflections needed to be acquired, so that electron diffraction tomography was used to record the intensities. The cation positions were obtained but the distribution of the cations on the sites was not evident. Z-contrast imaging showed that disorder on some cationic sites has to be considered (fig.2).

 

[1] Kumaran et al, J Cryst Growth 292 (2006) 368-372

[2] Lacorre et al, Nature 404 (2000), 856-858

[3] Alonso et al, J Solid State Chem 177 (2004) 2470-2476

[4] Brixner et al, J Solid State Chem. 5 (1972) 186-190

[5] Yoshimura et al, Mater Res Bull 11 (1976) 151-158

[6] Yanoskii et al, Sov Phys Crystallogr 20(3), 354-355

[7] Ivanova et al, Inorg Mater (1970) 803-805

[8] Chambrier et al, J Solid State Chem 183 (2009) 209-214

[9] Chambrier et al, Inorganic Chemistry 48 (2009) 6566-6572

[10] Chambrier et al, Inorganic Chemistry 53 (2014) 147-159

[11] Chambrier et al, J Solid State Chem 183 (2010) 1297-1302


Stéphanie KODJIKIAN (Institut Neel CNRS, Grenoble), Christophe LEPOITTEVIN, Holger KLEIN, Thomas SCHÖNENBERGER, Oleg LEBEDEV, Olivier LEYNAUD, Marie-Hélène CHAMBRIER, François GOUTENOIRE
15:00 - 15:15 #6780 - IM06-OP124 Short-range-order (SRO) in quenched Ni-rich Ni-Ti alloys.
IM06-OP124 Short-range-order (SRO) in quenched Ni-rich Ni-Ti alloys.

Binary Ni-Ti alloys have a wide application in industry and medicine due to their shape memory effect and superelasticity properties. These mechanical properties are known to be caused by a martensitic transformation of which the characteristics are strongly dependent on Ni4Ti3 precipitates formed during aging.

In this study a Ni-Ti alloy which is quenched immediately after the production and aged at room temperature is investigated. No precipitation is expected to form in the sample, which is confirmed by conventional TEM images. However, the alloy still shows a changing shape memory effect with ageing time at room temperature, which indicates there must exist some small structural changes not visible by conventional TEM. These are also expected from observed diffuse intensities (Fig. 1) arranged around particular geometrical loci in reciprocal space. Different techniques are proposed and used to identify these microdomains. The Cluster Model [1] that assigns the shape of the diffuse reciprocal intensity to that of microdomains is applied to analyze the results. In the present case the diffuse intensity can to a first order be approximated by {111}* reciprocal planes, which can be translated into atomic rows along the [111] crystallographic directions in the cubic Ni-Ti lattice. Such rows of pure Ni are also present in the crystal structure of Ni4Ti3 precipitates, as seen in Fig. 2. In other words, the diffuse intensity can be correlated with contiguous strings of Ni atoms in the cubic directions of the B2 matrix, which normally reveals a …-Ni-Ti-Ni-Ti-… sequence along these directions. In order to observe such atomic strings in real space, aberration corrected HAADF-STEM has been performed along a cubic direction. Simulations indicate that the clustering of heavier Ni atoms can be seen as an increment of appr. 2% of intensity of a single atomic column due to the Z-contrast nature of the HAADF-STEM imaging concept. The experimental image shown in Fig. 3a indeed shows some random but coagulated fluctuations in intensity of the columns, as can be seen from the line trace in Fig. 3b (as well as by slightly defocusing your eyes when looking at the picture). However, to what extend these can be attributed to the atomic clustering is still not clear. In the near future, also other advanced TEM techniques will be applied in order to further identify the columns containing contiguous strings of Ni atoms.

[1] D. van Dyck, R. de Ridder, G. van Tendeloo, and S. Amelinckx, “A cluster model for the transition state and its study by means of electron diffraction. III. Generalisations of the theory and relation to the SRO parameters,” Phys. Status Solidi A, vol. 43, no. 2, pp. 541–552, Oct. 1977.


Saeid POURBABAK (Antwerp, Belgium), Xiebing WANG, Bert VERLINDEN, Jan VAN HUMBEECK, Dominique SCHRYVERS
15:15 - 15:30 #5718 - IM06-OP115 Radial distribution function imaging by STEM diffraction: a method development in resolving the mysteries of amorphous materials.
Radial distribution function imaging by STEM diffraction: a method development in resolving the mysteries of amorphous materials.

Interpreting atomic structure of amorphous materials have attracted attentions for a century and, in recent years, especially heterogeneous nanoglasses have fueled the interest because of their unusual structure and properties [1]. However, only few experimental means offer a way to characterize the disordered structures. Atomic radial distribution function (RDF) is one of the important tools for the goal, which was first obtained from X-ray diffraction data of organic solids [2], and afterward extended to electron diffraction for metallic glasses [3]. RDF describes the probability to find certain atomic pairs as a function of the pair separation and consequently, provides structural information in the short- and medium-range. However, the traditional diffraction experiments only average large sample areas and lack spatial resolution especially at nanometer scale. Plenty information is hidden in the averaged signal.

 

In this work, we demonstrate a newly developed method, RDF-imaging, combining diffraction imaging in scanning transmission electron microscopy (STEM) mode [4] with RDF analysis and spectral-imaging analysis (e.g. multiple linear least square (MLLS) fitting) to achieve structural mapping of heterogeneous amorphous materials with 1 nm resolution. Figure 1 schematically shows the procedure for data acquisition and RDF calculation: a 4-dimensional (D) diffraction-image is acquired by recording diffraction patterns in STEM mode with quasi parallel nano-beam configuration (0.8 mrad convergence angle) and 1 nm spot size. RDFs are calculated from the diffraction patterns according to description in [3][5]. A 3D data cube of RDFs (RDF-cube) is constructed by relating pixel positions of the initial diffraction-image to the calculated RDFs. The RDF-cube can then be analyzed by MLLS fitting of reference spectra taking experimentally from pure phase or numerically from matrix decomposition by multivariate statistical analysis.

 

The method is extremely sensitive to atomic packing variation. Figure 2 shows an application to amorphous ZrO2 (a-ZrO2) and a-ZrFe multilayers. Not surprisingly, both the a-ZrO2 and the a-ZrFe phases are unambiguously distinguished by RDF-image (figure 2d,e), but also an interface layer between ZrO2 and ZrFe (figure 2c) is detected, which could not be identified in STEM-EELS and EDX maps. The atomic structure (figure 2a, red dashed-line) of the interfacial layers possesses the same atomic packing as that of the a-ZrO2 phase (figure 2a, blue line) but with a 0.04 Ǻ shrinkage of the average bonding distance.  The shift in bonding distance could be introduced by Fe replacing Zr atoms in the ZrO2 clusters due to diffusion of Fe atoms from the a-ZrFe into the ZrO2 layers.

 

Acknowledgement: Authors thank financial support from KNMF and Hi-C project.

References

[1] R Witte, T Feng, JX Fang, A Fischer, M Ghafari, R Kruk, R Brand, D Wang, H Hahn, H Gleiter, Appl Phys Lett 103 (2013), p. 073106.

[2] T Egami and S J L Billinge in “Underneath the Bragg peaks structural analysis of complex materials”, (Elsevier Ltd, Kidlington, Oxford, UK), p. 55.

[3] D J H Cockayne and D R Mckenzie, Acta Crystallographica Section A 44 (1988), p. 870.

[4] C Gammer, V BurakOzdol, C H Liebscher and A M Minor, Ultramicroscopy 155 (2015), p. 1.

[5] X Mu, S Neelamraju, W Sigle, C T Koch, N Toto, J C Schon, A Bach, D Fischer, M Jansen and P A van Aken, J. Appl. Cryst. 46  (2013), p. 1105.


Xiaoke MU (Eggenstein-Leopoldshafen, Germany), Di WANG, Tao FENG, Christian KÜBEL
15:30 - 15:45 #6738 - IM06-OP123 Study of amorphous silica by Electron Energy Loss Spectroscopy and electron diffraction PDF.
IM06-OP123 Study of amorphous silica by Electron Energy Loss Spectroscopy and electron diffraction PDF.

Amorphous silica (a-SiO2) has many industrial (glass former) and scientific applications. Structurally silica which has SiO4 tetrahedral units connected with bridging O at the corners. To understand and predict interesting properties of such materials depends on the knowledge of the detailed atomic structure. The loss of structural ordering in amorphous materials, carry sharp Bragg diffraction reflections to disappear and only diffuse diffraction pattern are observed. Study of amorphous materials cannot be performed by routine crystallography and techniques like Pair Distribution Function (PDF) can be used for structure analysis using X-Ray, neutron or electron diffraction (ED) [1]. ED  related PDF (e-PDF)  in TEM has the big advantage over X- Ray PDF technique that allows studying local structural ordering of amorphous materials in nm scale by collecting (ED) patterns in very short time (msec instead of 15-24 hours in X-Ray case).  Here we present how e-PDF analysis can be used to study in detail hydrothermal reactions flow process in amorphous silica.

Amorphous silica samples were heated with water in hydrothermal container under different time scales and were studied by X-ray, Electron Energy Loss Spectroscopy and e-PDF. Hydrothermal reaction on amorphous silica was performed with reaction times 6, 16, 312 hours [2].  Figure 1 show the Si L2,3 edges for studied compounds. Si peaks are always observed but its giving rise to a broadening of spectra as the intensity increases. Such broadening in the Si L peaks is probably due to Si tetrahedral distortion, since in SiO2 amorphous phase, distances between silicon and the four surrounding oxygen are slightly different. From the collected ED data, pair distribution function (G(r)) was calculated using dedicated ePDF software [3], developed to analyse ED patterns from amorphous and nanomaterials (Figure 2). Our analysis with ePDF has revealed that no peak (corresponding to interatomic distances) was found beyond 5 Å, which confirms that only short range ordering present in the material, even after several hours of hydrothermal reaction. Besides, small changes were observed in the PDF peak positions (corresponding to interatomic Si-Si, Si-O and O-O distances). All such peaks/interatomic distances match well with the distances existing within the SiO2 crystalline structure. Slight peak width change has also been observed with reaction time, which can possibly arise from local strain. Modelling of the amorphous silica reactive product is under process.

 

1. G. R. Anstis, Z. Liu, M. Lake, Ultramicroscopy, 26, (1988), 65

2. L. Khouchaf, A. Hamoudi and P. Cordier, Journal of H. Materials, 168, (2009) 1188

3. A. M. M. Abeykoon, H. Hu, L. Wu, Y. Zhu, S. J. L. Billinge, J. Appl. Cryst., 48, (2015) 244


Lahcen KHOUCHAF, Khalid BOULAHYA (Madrid, Spain), Das PARTHA, Janos LABAR, Viktoria VIS, Stavros NICOLOPOULOS
Salon Tête d'Or