Wednesday 30 September
08:50

"Wednesday 30 September"

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E01
08:50 - 18:00

PRE CONGRESS WORKSHOP 5
Annual Meeting of the Glioma MRI (GliMR) Working Group

Chairperson: Rui SIMÕES (Research Associate) (Chairperson, Porto, Portugal)
Committees: Ana Paula CANDIOTA (Associate Professor) (Committee, CERDANYOLA DEL VALLÈS, Spain), Yaara EREZ (Assistant Professor) (Committee, Ramat-Gan, Israel), Ana Leonor MONTEIRO MATOSO (PhD Student) (Committee, Lisbon, Portugal), Albert PONS-ESCODA (Senior Consultant Neuroradiologist) (Committee, Barcelona, Spain), Harish POPTANI (Committee, Liverpool, United Kingdom), Esther WARNERT (Committee, The Netherlands)
08:50 - 09:00 Welcome. Esther WARNERT (Speaker, The Netherlands), Rui SIMÕES (Research Associate) (Speaker, Porto, Portugal)
09:00 - 09:00 S1. Improve patient outcomes with brain tumor imaging. Vera KEIL (Consultant) (Moderator, Amsterdam, The Netherlands), Tom BOOTH (Moderator, London, United Kingdom)
09:00 - 09:20 Treatment planning and monitoring: seeing more, seeing better. Cristina RAMOS (Speaker, Porto, Portugal)
09:20 - 09:40 Improving neurosurgery with imaging and music. Andreu GABARRÓS (Speaker, Barcelona, Spain)
09:40 - 10:00 Non-invasive imaging and patient quality of life.
10:00 - 10:30 Round Table Discussion.
10:30 - 11:00 Coffee break.
11:00 - 11:00 S2. Translational frontiers for brain tumor imaging. Ana Paula CANDIOTA (Associate Professor) (Moderator, CERDANYOLA DEL VALLÈS, Spain), Harish POPTANI (Moderator, Liverpool, United Kingdom)
11:00 - 11:30 Imaging brain tumor microstructural remodeling. Marco PALOMBO (Speaker, Cardiff, United Kingdom)
11:30 - 12:00 AI-enhanced brain tumor imaging in neuroscience and neuroradiology. Esin OZTURK ISIK (Scientist) (Speaker, Istanbul, Turkey)
12:00 - 12:30 Linking brain tumor imaging and histology. Peter LAVIOLETTE (Speaker, Milwaukee, USA)
12:30 - 13:30 Lunch.
12:30 - 13:30 S3. Sponsored Session: Lunch Symposium. Ana Leonor MONTEIRO MATOSO (PhD Student) (Speaker, Lisbon, Portugal), Rui SIMÕES (Research Associate) (Speaker, Porto, Portugal)
13:45 - 13:45 S4. GliMR: where we stand and new challenges. Yaara EREZ (Assistant Professor) (Moderator, Ramat-Gan, Israel), Jan PETR
13:45 - 14:00 Present and future of GliMR. Esther WARNERT (Speaker, The Netherlands)
14:00 - 14:20 The Current Histomolecular Classification of Gliomas: WHO 2026 and Beyond. Cristina CARRATO (Speaker, Badalona, Spain)
14:20 - 14:40 Cancer Imaging Europe (EUCAIM): glioblastoma. Maria BESER ROBLES (Speaker, Valencia, Spain)
14:40 - 15:10 Coffee break.
15:10 - 16:10 Selected abstract presentations.
16:10 - 17:10 Selected project presentations.
17:10 - 17:50 S5. Task Forces.
17:50 - 18:00 Adjourn. Esther WARNERT (Speaker, The Netherlands), Rui SIMÕES (Research Associate) (Speaker, Porto, Portugal)
Sala d’Assaig
09:00

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B01
09:00 - 18:00

PRE CONGRESS WORKSHOP 2
Microstructure imaging

Chairpersons: Mariam ANDERSSON (Chairperson, Copenhagen, Denmark), Chantal TAX (Associate Professor) (Chairperson, Utrecht, The Netherlands)
Committees: Isabelle COROUGE (Research Engineer) (Committee, Rennes, France), Elda FISCHI-GOMEZ (Committee, Switzerland), Maeliss JALLAIS (Research Associate) (Committee, Cardiff, United Kingdom), Emma THOMSON (PhD) (Committee, Denmark)
09:00 - 09:00 Session 1: Basics/background.
09:05 - 09:45 The physics of diffusion within microstructure. Rafael NETO HENRIQUES (Speaker, Lisbon, Portugal)
09:45 - 10:30 Imaging diffusion with MRI: from basics to state-of-the-art. Simona SCHIAVI (Speaker, Italy)
10:30 - 10:45 Break.
10:45 - 10:45 Session 2: Multi-contrast microstructure MRI.
10:45 - 11:10 Diffusion-relaxation. Daniel TOPGAARD (Speaker, Lund, Sweden)
11:10 - 11:35 Low-field relaxometry and relation to diffusion. Lionel BROCHE (Senior research fellow) (Speaker, Aberdeen, United Kingdom)
11:35 - 12:00 Diffusion-QSM. Michiel COTTAAR (Postdoctoral Researcher) (Speaker, Oxford, United Kingdom)
12:00 - 12:30 Pitches session.
12:30 - 13:30 Lunch.
13:30 - 13:30 Session 3: Microstructure imaging with non-MRI.
13:30 - 13:55 State-of-the-art microscopy. Marianne LIEBI (Speaker, Switzerland)
13:55 - 14:20 Ultrasound. Emilie FRANCESCHINI (Speaker, France)
14:20 - 15:05 Panel discussion.
15:05 - 16:00 Break and posters.
16:00 - 16:00 Session 4: Out of the Ordinary.
16:00 - 16:25 Within-cell MRI with ultra-high field. Luisa CIOBANU (Research Director) (Speaker, Paris, France)
16:25 - 16:50 Organoid microstructure. Ivan ALIĆ (Speaker, Zagreb, Croatia)
16:50 - 17:15 CHALLENGE: Organoid/human brain samples.
17:15 - 17:30 Concluding remarks.
17:30 - 18:00 Networking and poster viewing.
Sala Simfònica

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C01
09:00 - 12:30

PRE CONGRESS WORKSHOP 3
Practical MRI Safety Management

Chairpersons: Allison MCGEE (PhD) (Chairperson, Dublin, Ireland), Claude PORTANIER MIFSUD (Masters) (Chairperson, Msida, Malta., Malta)
09:00 - 09:10 Workshop Introduction. Allison MCGEE (PhD) (Speaker, Dublin, Ireland)
09:10 - 09:40 ESMRMB practice guidelines when managing MR safety in vulnerable patients. Francesco SANTINI (CPC Member) (Speaker, BASEL, Switzerland)
09:40 - 10:10 Safety considerations for remote MRI. Tomasz BIENIAS
10:10 - 10:40 Safety considerations in paediatric MRI. Fernaiza SAHIDJUAN (Speaker, France)
10:40 - 10:55 Q&A session 1.
10:55 - 11:15 Coffee Break.
11:15 - 11:45 MR scanning protocol optimisation for MR conditional implants. Claude PORTANIER MIFSUD (Masters) (Speaker, Msida, Malta., Malta)
11:45 - 12:15 Considerations and processes for hearing implant MRI testing. Markus NAGL
12:15 - 12:30 Q&A session 2.
Sala Petita

"Wednesday 30 September"

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H01
09:00 - 17:30

PRE CONGRESS WORKSHOP 8
Magnetic North: Your Guide to Navigating ESMRMB

Chairpersons: Roy HAAST (PhD) (Chairperson, Marseille, France), Andreea HERTANU (PhD) (Chairperson, Marseille, France), Beatrice LENA (Ph.D.) (Chairperson, Leiden, The Netherlands)
09:00 - 09:30 Welcome.
09:30 - 10:00 Short Intro to "Magnetic North: Your Guide to Navigating ESMRMB". Beatrice LENA (Ph.D.) (Speaker, Leiden, The Netherlands)
10:00 - 10:00 How ESMRMB Works: Practical Navigation.
10:00 - 10:20 Overview of ESMRMB Meeting with Guided Tour. Roy HAAST (PhD) (Speaker, Marseille, France)
10:20 - 10:45 Top 10 Practical Tips for Conference Success. Patricia CLEMENT (Postdoctoral researcher) (Speaker, Ghent, Belgium)
10:45 - 11:15 Coffee Break & Conference Bingo.
11:15 - 12:30 Soft Skill Workshop: Pitch Your Science. Elena DE LA CALLE VARGAS
12:30 - 13:30 Lunch.
13:30 - 13:30 Senior Perspectives.
13:30 - 14:00 My First Conferences: Lessons Learned. Rita G. NUNES (PhD) (Speaker, Lisbon, Portugal)
14:00 - 14:30 My First Conferences: Lessons. Nikola STIKOV (Speaker, Montreal, Canada)
14:30 - 15:30 Team Activity: Imagining the Future of MRI.
15:30 - 16:00 Coffee Break.
16:00 - 17:00 Team Activity: Conference Fears and Hopes.
17:00 - 17:30 Personal Conference Planning Time.
17:30 - 17:30 Closing.
Salas 6-8
09:15

"Wednesday 30 September"

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G01
09:15 - 18:00

PRE CONGRESS WORKSHOP 7
Imaging without Borders: A Hands-On Low-Field MRI Hardware Workshop

Moderators: Udunna ANAZODO (Moderator, Canada), Marina FERNANDEZ GARCIA (PhD Candidate, CAMERA Consortium Manager) (Moderator, Valencia, Spain)
09:15 - 09:20 Welcome remark. Marina FERNANDEZ GARCIA (PhD Candidate, CAMERA Consortium Manager) (Speaker, Valencia, Spain)
09:20 - 10:05 Introduction to low-field MRI and building your own scanner. Teresa GUALLART NAVAL (Speaker, Valencia, Spain)
10:05 - 10:45 From components to scanner: the building blocks. Maureen NAYABERE (Speaker, New York, USA), Marina FERNANDEZ GARCIA (PhD Candidate, CAMERA Consortium Manager) (Speaker, Valencia, Spain)
10:45 - 12:30 Build session 1: Magnet & Robot.
12:30 - 13:30 Lunch.
13:30 - 17:30 Build session 2: Acquire a signal.
17:30 - 18:00 Closing remarks and note of thanks.
Sala 1
09:30

"Wednesday 30 September"

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A01
09:30 - 18:00

PRE CONGRESS WORKSHOP 1
Preclinical MRI Frontiers: Shaping the Future Together

Chairperson: Mathieu SANTIN (Platform Manager) (Chairperson, Paris, France)
Committees: Markus ASWENDT (PI) (Committee, Frankfurt am Main, Germany), Andreea HERTANU (PhD) (Committee, Marseille, France), Alkystis PHINIKARIDOU (Committee, London, United Kingdom)
09:30 - 09:50 Welcome.
09:50 - 10:00 Introduction. Mathieu SANTIN (Platform Manager) (Speaker, Paris, France)
10:00 - 11:00 SESSION 1: Technology. Mathieu SANTIN (Platform Manager) (Chairperson, Paris, France)
10:00 - 10:20 - Pulseq programming for preclinical imaging. Aurélien TROTIER (Study Engineer) (Speaker, BORDEAUX, France)
10:20 - 10:40 - Offline Reconstruction. Patrick SCHUENKE (MR Sequence Developer) (Speaker, Ulm, Germany)
10:40 - 11:00 - Preclinical imaging in human 7T scanner. Elmar LAISTLER (Associate Professor) (Speaker, Vienna, Austria)
11:00 - 11:30 Coffee break.
11:30 - 12:30 SESSION 2: X nuclei (brain, cardiac). Andreea HERTANU (PhD) (Chairperson, Marseille, France)
11:30 - 11:50 - Hyperpolarized (13)C cardiac metabolic imaging. Thomas EYKYN (Lecturer) (Speaker, London, United Kingdom)
11:50 - 12:10 - Mouse myocardial (31)P MRS. Jeanine PROMPERS (Full professor) (Speaker, Maastricht, The Netherlands)
12:10 - 12:30 - Fluorine-19 magnetic resonance imaging in preclinical models of inflammation. Sonia WAICZIES (PI) (Speaker, Berlin, Germany)
12:30 - 13:30 SPONSORED LUNCH: Bruker Biospin.
13:30 - 14:30 SESSIONS 3: Microstructure. Mathieu SANTIN (Platform Manager) (Speaker, Paris, France)
13:30 - 13:50 - Brain microstructure in rodents. Rita OLIVEIRA (Postdoctoral) (Speaker, Lausanne, Switzerland)
13:50 - 14:10 - Free Waveform gradients. Maxime YON (Postdoctorant) (Speaker, Rennes, France)
14:10 - 14:30 - Post Mortem Microstructure Imaging. Claudia LENZ (PhD) (Speaker, Basel, Switzerland)
14:30 - 15:30 SESSION 4: CARDIAC AND VASCULAR. Alkystis PHINIKARIDOU (Chairperson, London, United Kingdom)
14:30 - 14:50 - MRI of post-MI scar. Aurelien BUSTIN (Prof.) (Speaker, Bordeaux, France)
14:50 - 15:10 - Cardiac DTI. Sonia NIELLES-VALLESPIN (Speaker, London, United Kingdom)
15:10 - 15:30 - From Mouse to Pig: Molecular Imaging Targets in Vascular Disease. Dilyana MANGAROVA (Speaker, Germany)
15:30 - 15:45 Coffee break.
15:45 - 16:45 POWER PITCH SESSION (6 Selected posters).
16:45 - 18:00 HANDS-ON SESSION : Acquire & Reconstruct. Patrick SCHUENKE (MR Sequence Developer) (Chairperson, Ulm, Germany), Aurélien TROTIER (Study Engineer) (Chairperson, BORDEAUX, France)
Sala de Cambra
13:30

"Wednesday 30 September"

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D01
13:30 - 18:00

PRE CONGRESS WORKSHOP 4
Multiple Sclerosis and Related Neuroimmunological Disorders: Translating Clinical Needs into Robust MR Solutions

Chairperson: Sonia WAICZIES (PI) (Chairperson, Berlin, Germany)
Committees: Ismail KOUBIYR (Assistant Professor) (Committee, Amsterdam, The Netherlands), Myrte STRIK (Postdoctoral Researcher) (Committee, Amsterdam, The Netherlands)
13:30 - 14:15 Session 1: Optic Nerve.
13:30 - 13:53 - Bringing Optic Nerve MRI to the Foreground: a Clinical Perspective. Olivier OUTTERYCK (Speaker, Lille, France)
13:53 - 14:15 - Bringing the Optic Nerve into Focus: Technical and Quantitative MRI in MS. Deborah PARETO (PhD) (Speaker, Barcelona, Spain)
14:15 - 15:00 Session 2: MR Lesion Biomarkers.
14:15 - 14:38 - Paramagnetic Rim Lesions and Slowly Expanding Lesions in MS: from MRI Biomarkers to Clinical Impact. Alessandro CAGOL (PostDoc) (Speaker, Basel, Switzerland)
14:38 - 15:00 - Paramagnetic Rim Lesions and Slowly Expanding Lesions in MS: from MRI Acquisition to Automated Detection. Meritxell BACH CUADRA (Senior Lecturer) (Speaker, Lausanne, Switzerland)
15:00 - 15:30 Break.
15:30 - 16:00 Power pitch presentations of selected abstracts.
16:00 - 16:45 Session 3: Patient Trajectories and Prognosis.
16:00 - 16:23 - Understanding and Predicting Progression in MS. Carmen TUR (Principal Investigator; Miguel Servet & R3 Researcher) (Speaker, Barcelona, Spain)
16:23 - 16:45 - Patient Trajectories and Prognosis in Neuroimmunological Disorders: A Technical Perspective on MRI-Based Modeling. Loredana STORELLI (Researcher) (Speaker, Milan, Italy)
16:45 - 17:30 Session 4: MRI in Clinical and Research Settings.
16:45 - 17:08 - MRI Acquisition in MS: the Clinical Perspective. Pablo NAVAL BAUDÍN (Speaker, Spain)
17:08 - 17:30 - Quantitative MR in MS: the Proven and the New Kids on the Block - a Means to Study Lesions and Normal-Appearing Tissue. José P. MARQUES (Speaker, The Netherlands)
17:30 - 18:00 Round table discussion and WG Meeting.
Sala Petita

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F01
13:30 - 18:00

PRE CONGRESS WORKSHOP 6
From Diagnostic Imaging to Therapeutic Guidance: The Expanding Role of MRI in Radiotherapy

Chairperson: Lars E. OLSSON (Professor) (Chairperson, Lund, Sweden)
Committees: Joan CHICK (Clinical Scientist) (Committee, London, United Kingdom), Marielle PHILIPPENS (associate professor) (Committee, Utrecht, The Netherlands), Marco RIBOLDI (Associate Professor) (Committee, Munich, Germany)
13:30 - 14:00 Introduction and motivation – Why MRI in RT. Lars E. OLSSON (Professor) (Speaker, Lund, Sweden)
14:00 - 14:30 Differences between diagnostic MRI-physics and MRI-physics in RT-applications. Marco RIBOLDI (Associate Professor) (Speaker, Munich, Germany)
14:30 - 15:00 MRI in RT – workflow, coils, protocols …. Joan CHICK (Clinical Scientist) (Speaker, London, United Kingdom)
15:00 - 15:30 MRI-only RT. Hubert GABRYS (Speaker, Zurich, Switzerland)
15:30 - 16:00 Break.
16:00 - 16:30 Specific MRI QA in RT. Marielle PHILIPPENS (associate professor) (Speaker, Utrecht, The Netherlands)
16:30 - 17:00 Functional MRI and imaging biomarkers in RT. Petra VAN HOUDT (Associate Staff Scientist) (Speaker, Amsterdam, The Netherlands)
17:00 - 17:30 MR-guided RT, MR-linac. Bas RAAIJMAKERS (prof experimental clinical physics) (Speaker, Utrecht, The Netherlands)
17:30 - 18:00 Discussion: The Expanding Role of MRI in Radiotherapy.
Sala 1

"Wednesday 30 September"

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G02
13:30 - 18:00

PRE CONGRESS WORKSHOP 7
Imaging without Borders: A Hands-On Low-Field MRI Hardware Workshop

Salas 4-5,10,11
Thursday 01 October
09:00

"Thursday 01 October"

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A10
09:00 - 09:30

OPENING

Sala Simfònica
09:30

"Thursday 01 October"

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A11
09:30 - 10:30

FT1-1 Plenary - The MRI Society in 2050

FT Society
09:30 - 09:55 The Dark Future of MRI in Society. Antonio Maria CHIARELLI (Associate Professor) (Keynote Speaker, Chieti Scalo, Italy)
09:55 - 10:20 The Bright Future of MRI in Society. Andrew WEBB (Professor) (Keynote Speaker, Leiden, The Netherlands)
10:20 - 10:30 Q&A.
09:30 - 10:30
Sala Simfònica
10:30 TIME FOR A BREAK - Coffee and refreshments will be available at the cash bar.
10:45

"Thursday 01 October"

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A12
10:45 - 12:00

OA1-1 Scientific session
Open and Sustainable MRI: From Standardization to Green AI

10:45 - 10:57 #53516 - PG001 End-to-End and Vendor-Neutral Magnetic Resonance Fingerprinting with OpenMRF.
PG001 End-to-End and Vendor-Neutral Magnetic Resonance Fingerprinting with OpenMRF.

Magnetic Resonance Fingerprinting (MRF) enables simultaneous quantification of multiple tissue parameters and has been successfully applied across a wide range of clinical applications [1,2]. Recent toolbox solutions include a cardiac MRF (cMRF) implementation based on the open-source Pulseq standard [3] and a proprietary vendor-specific MRF Development Kit for brain imaging [4]. However, currently available frameworks remain limited in flexibility and typically provide access only to basic MRF techniques, while advanced methods require substantial modifications of the underlying pulse sequence design, advanced image reconstruction, and accurate modeling of the resulting signal evolution. In particular, contrasts such as rotating-frame relaxation (T1ρ) depend on precise modeling of spin-lock conditions and relaxation during long adiabatic radiofrequency (RF) pulses. Moreover, recent developments have expanded MRF beyond conventional spiral readouts to advanced acquisition strategies, such as multi-echo rosette trajectories, enabling simultaneous estimation of the proton density fat fraction (PDFF) [5]. This work presents OpenMRF, an open-source, Pulseq-based framework that enables flexible MRF sequence design, physics-accurate dictionary simulation, state-of-the-art reconstruction, and seamless transferability across vendors, platforms, and field strengths [6].

OpenMRF provides a modular development toolbox in which contrast preparation modules (e.g., inversions, T2 preparations, spin-locking) and readouts (e.g., spirals, rosettes, cones) can be flexibly combined using Pulseq [7]. Dictionary generation is performed automatically from the hardware-instruction containing .seq files, ensuring full consistency between sequence design and signal simulation. A key feature of the core simulator is the explicit modeling of sequence-dependent physical effects, including slice-profile imperfections and relaxation during adiabatic pulses, which are incorporated via precomputed transition matrices for individual RF waveforms. Spin-lock modules are automatically detected and modeled using an extended formulation of the Bloch equations enabling T1ρ modeling. Image reconstruction is performed based on a low-rank subspace approach [8]. The framework was evaluated using numerical phantom simulations, a multi-site ISMRM/NIST phantom study across Siemens systems (0.55 T, 1.5 T, 3 T), and implementations on GE (3 T) and United Imaging platforms (3 T and 5 T). Representative in vivo applications included simultaneous cardiac T1/T2/T1ρ quantification and multiparametric renal imaging using rosette readouts with additional PDFF and T2* estimation.

In a numerical phantom experiment, OpenMRF yielded quantitative maps in close agreement with ground truth values, with mean deviations of 0.40±0.99% (T1), -0.94±4.15% (T2), and -0.10±0.84% (T1ρ), while residual spatial aliasing structures remained visible in the deviation maps. Multi-vendor phantom experiments demonstrated consistent T1 and T2 quantification across Siemens, GE, and United Imaging platforms over a wide range of field strengths (0.55…5 T). Quantitative comparison with spin-echo and spin-lock reference measurements showed good overall agreement across sites, with low bias for T1 (-0.1±2.9%) and moderate variability for T2 (-1.5±8.7%) and T1ρ (-4.0±7.2%). In vivo experiments confirmed the feasibility of advanced applications, including cardiac T1ρ quantification and multi-parametric abdominal imaging using rosette MRF.

OpenMRF enables accurate and reproducible fingerprinting, while supporting advanced contrasts such as T1ρ and flexible acquisition strategies including rosette trajectories. The close agreement with reference measurements and consistent performance across platforms and vendors highlight the potential of Pulseq-based standardization for quantitative MRI. However, several limitations remain. While validation was successfully performed on three vendors supporting Pulseq (Siemens, GE, United Imaging), experimental validation on Philips systems is still pending, although sequence compilation has already been accomplished. Furthermore, the current implementation is based on Matlab, and ongoing work focuses on a Python version, which will enable GPU-accelerated dictionary generation and reconstruction using PyTorch. Finally, high-field applications (>3T) have not yet been systematically evaluated, but can be readily explored using the framework.

Open-source frameworks represent an important step for pushing flexibility, reproducibility, and standardization in quantitative MRI. By enabling harmonized implementations across vendors and platforms, such approaches facilitate the development and translation of advanced quantitative imaging methods and support multi-center studies. OpenMRF is freely available, actively maintained, and fully documented at openmrf.org.
Maximilian GRAM (Würzburg, Germany) , Tom GRIESLER , Jannik STEBANI , Sydney KAPLAN , Petra ALBERT , Martin BLAIMER , Tobias WECH , Qingping CHEN , Xiang WANG , Maxim ZAITSEV , Zhibo ZHU , Qi LIU , Peter MARTIN , Jon-Fredrik NIELSEN , Jesse HAMILTON , Nicole SEIBERLICH , Peter NORDBECK
10:57 - 11:09 #54455 - PG002 SwiftCAT: A Brain MRI Curation Tool into BIDS Standard based on Acquisition Parameters.
PG002 SwiftCAT: A Brain MRI Curation Tool into BIDS Standard based on Acquisition Parameters.

Neurological disorders can have a significant impact on patients' lives and, for certain brain tumors, even low survival rates [1]. MRI is essential to diagnose and monitor treatment response [2]. To aid in these tasks, combining MRI with Machine Learning (ML) tools has become increasingly relevant, with ML requiring large amounts of properly curated data. Researchers are encouraged to curate their data into the Brain Imaging Data Structure (BIDS) standard [3]. This curation task is usually arduous and infeasible manually, especially for multicenter multiscanner datasets due to their intrinsic heterogeneity. Several software tools have been proposed to aid in this conversion: BIDScoin [4], HeuDiConv [5], dcm2bids [6], and bidskit [7]. However, these tools often use unreliable metadata parameters for their conversion into BIDS that depend on manual tasks during acquisition, such as series descriptions and filenames. This hinders generalization to other datasets/centers. Here, we present a user-friendly Python toolbox, accompanied by a graphical user interface (GUI), that curates DICOM files from multiscanner multicenter longitudinal brain MRI data to BIDS, based on reliable physical parameters: the Swift MRI Curation and Annotation Tool (SwiftCAT).

We are using a private clinical dataset of 70 glioblastoma patients to develop and test SwiftCAT. Data includes 536 time points with anatomical, diffusion, and perfusion MRI acquired in 21 centers and 17 scanners. The anatomical data (3061 images) has been curated with our toolbox, while diffusion and perfusion data curation is ongoing. The naming process from source to BIDS is based on default rules (Figure 1) that can be edited by the user and relies mostly on acquisition physical parameters (e.g. echo time, repetition time, inversion time, flip angle, and scanning sequence). To identify contrast-enhanced images, keywords related to gadolinium are searched for in the filename/series description, as this cannot be confirmed by a physical acquisition parameter, requiring a subjective filename search. The GUI aims to additionally allow manual inspection of naming correspondence (Figure 2) and, if necessary, editing of the proposed final filename (Figure 3).

Preliminary results are promising, with 98% of anatomical MRI files successfully renamed automatically (only 58 out of 3061 files had renaming errors). The proposed filenames follow the structure: sub-XXX_ses-XX_acq-OrientationScanningSequence_Contrast_Modality. Early in-house GUI testing demonstrates user-friendliness and enhanced efficiency for manual quality checks in relation to the use of spreadsheets or written notes. At the moment, the GUI presents useful functionalities with more features planned. As of now, it consists essentially in a table with a correspondence between the original and the proposed filenames (Figure 2). Upon clicking on a row, a popup window editor opens (Figure 3): on the left, the user can find the metadata information for that image; on the right, the naming information, where it is possible to manually alter the filename. The user can also indicate if they have manually inspected the image on an external visualization tool for contrast enhancement and write notes about that scan. A reset button allows the user to reset the filename to the one first proposed by the tool. Back at the table, the T1w proposed filenames are highlighted in yellow, indicating a potential presence of contrast. If the user marks the image as manually checked with gadolinium, then the proposed filename becomes green, while with no gadolinium, the filename turns blue (Figure 4).

Our toolbox aims to meet the need for MRI data curation, a hard and necessary task. As clinical datasets grow and become more heterogeneous, the harder it is to manually rename every scan. For data acquired for research purposes or carefully standardized in one center, manual curation may be easier, as every scan will follow a similar naming structure. However, for clinical multicenter multiscanner data, the variability in naming protocols is too great. A tool like SwiftCAT, which focuses on physical acquisition parameters, overcomes this naming variability, as it takes into consideration physical quantities that, despite small variations, will be within the same range for every scanner and center. Regrettably, contrast enhancement cannot be differentiated by physical parameters of the scanner, as the difference is in the patient themselves. Thus, the only clue to its presence is the name given manually at acquisition time. Additionally, despite being tested on a glioblastoma dataset, we expect our toolbox to generalize well to other brain scans.

SwiftCAT shows promise to easily manage brain MRI datasets by renaming the data according to physical parameters and allowing easy annotation of scans. We anticipate it could be helpful to anyone with the need to curate a large and heterogeneous brain MRI dataset.
Marta Padrela LOUREIRO (Lisbon, Portugal) , Catarina PASSARINHO , Ana MATOSO , Rita Reis NUNES , Pedro VILELA , Patrícia FIGUEIREDO , Rita Gouveia NUNES
11:09 - 11:21 #54633 - PG003 A numerical simulation framework for combined diffusion and perfusion MRI.
PG003 A numerical simulation framework for combined diffusion and perfusion MRI.

Simulations of water diffusion in numerical brain tissue substrates have become essential tools, providing a ground-truth environment to understand how tissue microstructure influences the diffusion-weighted signal (1–4). However, current simulation frameworks focus exclusively on diffusion within and outside cells, thus ignoring the pseudo-diffusion effects caused by microvascular blood flow (5). While separate frameworks for simulating blood flow do exist (6,7), the lack of a combined environment prevents the accurate modeling of both diffusion and capillary perfusion. This limitation is important, as the Intravoxel Incoherent Motion (IVIM) model estimates the perfusion fraction (f), the pseudo-diffusion coefficient (D*) and the apparent diffusion coefficient (D), relies on the premise that tissue diffusivity is independent of blood flow (5). To address this gap, we extended the CATERPillar tool (8), a novel white matter substrate generator, to incorporate capillaries. We adapted the Monte Carlo Diffusion Simulator (MC-DC) (4) to account for laminar blood flow alongside the intra- and extracellular diffusion. Finally, we demonstrate the framework by fitting the IVIM model to a synthetic three compartment (axons, blood vessels and extracellular space) substrate and investigating the time dependence of model parameter estimates.

The MC-DC simulator was extended to model laminar blood flow by calculating a pressure gradient (∇P=[8*vmean*Σ(Ri²)]/Σ(Ri⁴/η)) from a user specified mean flow velocity (vmean), vessel radius (R) and using a blood viscosity (η) of 3*10-3 Pa.s (expected at 37°C). Intra-vessel walker velocities followed a tangent-constrained Poiseuille profile, according to its distance from the vessel centerline (r): v(r)=(ΔP/4ηL)*(R² - r²). A (150 µm)3 substrate was grown, containing volume fractions of 50% axons and 2.6% capillaries (9) (Table 1). Axons and capillaries were generated via CATERPillar along the same principal orientation using an opposing-plane attractor. Simulations utilised 1 walker/µm³, a 0.1 µm step length, and free intra-/extracellular diffusivities of 2.5 and 1.5 µm²/ms. Target mean blood velocities (1.0, 1.12, 1.25, and 1.5 mm/s) were chosen to reflect baseline to activity-induced cerebral blood flow (7). PGSE diffusion signals (32 directions/shell, b = 0 to 1000 s/mm², gradient duration δ = 5 ms, and diffusion time Δ = 5, 10, 15, 20, 25, 30, 40, and 50 ms) were generated. The IVIM model was fitted to synthetic data using: S/S₀ = (1-f) · e^(-b·D) [for b > 200]; f · e^(-b·D)*+ (1 - f) · e^(-b·D) [for 0 ≤ b ≤ 800]

Fig. 1 displays CATERPillar-generated vessels, which have a ~50 µm mean segment length, and example axons. Fig. 2 confirms expected signal behavior: rapid decay below b=200 driven by blood flow, contrasting the linear tissue-only log(signal). Fig. 3 details how Δ impacts IVIM estimates. f is systematically overestimated, worsening at longer Δ and higher velocities. Accurate f estimates are only obtained at the lowest Δ and lowest velocity. Parameter D* plateaus near Δ=25 ms at 10.5 µm2/ms for the lowest velocity, approximately matching the ground truth D*=v*l/6=10 µm2/ms prediction (11) for l=50 µm and v=1 mm/s. For higher velocities (>1.12 mm/s), D* fails to plateau. Finally, at short diffusion times (<10ms), the presence of high velocity blood flow results in an overestimation of tissue D. At longer diffusion times, faster velocities exhibit a steeper signal decrease, which inversely makes the estimation bias much more pronounced for slower velocities.

Our framework combines diffusion and perfusion to test IVIM accuracy. At long diffusion times, faster velocities yielded a D estimate closer to the ground truth, as their signal differs more from passive diffusion. At short diffusion times, however, fast perfusion produces stronger vascular contributions, leading to unexpected biases in D. This suggests that D mistakenly captures blood flow, not just tissue diffusion. Furthermore, when blood velocity increases, D* fails to rise to its ground truth for high velocities. Instead of increasing D*, the model artificially inflates f. Because the model absorbs the velocity into f, D* stays unnaturally low. Resolving this time- and velocity-dependent parameter bias is critical for optimising IVIM protocols and accurately interpreting brain and cancer perfusion metrics.

Our open-source framework extends previous simulations by coupling axonal diffusion with vascular perfusion. It enables white matter characterisation while accounting for haemodynamics. This facilitates studies on how perfusion confounds dMRI metrics and on optimising IVIM acquisition. Future work will integrate realistic vascular branching, explicit axon-vessel independent alignment (12) and the intrinsic Brownian diffusivity of blood water. These additions may further refine the velocity-driven trends observed in our current results.
Jasmine NGUYEN-DUC (Lausanne, Switzerland) , Rita OLIVEIRA , Ileana JELESCU
11:21 - 11:33 #54423 - PG004 Advanced Diffusion Parameter Mapping Using a Mobile 1.5T MRI Scanner.
PG004 Advanced Diffusion Parameter Mapping Using a Mobile 1.5T MRI Scanner.

On-site neuroimaging is essential for capturing the acute effects of environmental exposure [1], making mobile 1.5 T MRI a promising solution that balances portability with signal-to-noise ratio (SNR). Following a recent evaluation of B0/B1+ fields, structural T1-weighted imaging, and functional EPI BOLD reliability on a mobile 1.5 T MRI [2], this work assesses the reliability of diffusion-weighted imaging (DWI). Specifically, we validate the mobile 1.5 T scanner against a conventional, stationary 1.5 T system. System performance was characterized in a phantom by evaluating eddy current (EC) distortions and apparent diffusion coefficient (ADC) stability. Furthermore, test-retest repeatability and reproducibility of whole-brain DTI/DKI metrics were assessed in three healthy volunteers, demonstrating the viability of mobile 1.5 T MRI for advanced microstructural neuroimaging.

MRI data were acquired using two different Siemens Healthineers 1.5 T scanners equipped with XQ gradients (45 mT/m amplitude, 200 T/m/s slew rate) and 20-channel RF head/neck coils: 1) Stationary system (S: MAGNETOM Sola) and 2) Mobile system (M: MAGNETOM Viato.Mobile). Data acquisition consisted of: i) Phantom DWI stress test: A CuSO4-doped water phantom was scanned using a single-shell protocol (TE/TR = 71/4600 ms, 2.7 mm isotropic resolution, b=0, 1000 s/mm^2 across 250 volumes; TA = 19.7 min) and ii) In-vivo DWI: Three healthy volunteers were scanned on three separate days using a multi-shell protocol (TE/TR = 105/4800 ms, 2.5 mm isotropic resolution, b = 0, 550, 1100, and 2500 s/mm^2 across 150 volumes; SMS2; TA = 12.5 min). Baseline (conventional) scans were performed on the stationary system S on Day 1. Scans on the proposed mobile system M occurred on Days 2 and 3, with the mobile scanner relocated between days via a 30-minute drive to simulate realistic operational conditions. Each day, participants completed a test-retest protocol by exiting and re-entering the scanner for identical back-to-back sessions. This yielded 6 scans per subject (18 total datasets) to evaluate intra-day repeatability and inter-system reproducibility. All data were preprocessed and analyzed using the ACID toolbox [3] in SPM12 following motion and EC correction [4] as well as Hyperelastic Susceptibility Artifact Correction (HySCO) [5] of the diffusion-weighted volumes. For the phantom data, EC-induced registration parameters were extracted and the temporal stability of the apparent diffusion coefficient (ADC) was calculated. For the in-vivo data, a DTI/DKI framework [6] was used to estimate different metrics (such as FA) alongside with microstructural biophysical parameter maps using the white matter tract integrity (WMTI)-Watson model [7] implemented in ACID. WMTI-Watson maps were estimated from DKI-derived metrics to obtain voxel-wise estimates of axonal water fraction, compartment diffusivities, and orientation dispersion. Finally, whole-brain (wb) noise maps were estimated by MP-PCA to compute signal-to-noise ratio (SNR) maps [8], and all in-vivo outputs were brain-masked. The reproducibility was analyzed with violin and Bland-Altman plots.

Fig. 1: Eddy current (EC)-induced registration parameters across 250 volumes show low-amplitude modulations (<1%) for both systems. Phantom ADC values are stable across volumes, exhibiting comparable temporal fluctuations (±1%) but different offsets. Figs. 2 and 3: Axial and sagittal maps show uniform signal distributions, stable mean whole-brain SNR (30.9–33.3), and stable mean FA (0.27–0.29). Violin plots show overlapping distributions, while Bland-Altman plots show low test-retest bias and comparable limits of agreement between systems. Fig. 4: DTI/DKI maps (MD, AK, RK) and biophysical parameters (κ, f, Da) for both systems across three measurement days in a representative subject, alongside corresponding overlapping violin plots across all scans for all subjects. Bland–Altman plots show low bias, with Da exhibiting the lowest ±1.96 standard deviation (SD) of 1% and RK exhibiting the highest ±1.96 SD of 5%.

The mobile system achieves temporal EC stability comparable to the stationary system, with minor ADC offset variations likely driven by phantom temperature rather than hardware instability. Overlapping violin profiles and minimal Bland-Altman bias confirm excellent in vivo reproducibility across environments. Ultimately, the mobile platform successfully preserves high contrast and parametric fidelity across all DTI/DKI metrics.

This study validates that multi-shell DTI/DKI can be reliably implemented on a mobile 1.5T MRI system without compromising image quality or SNR. High test-retest reproducibility across volunteers and stable post-relocation phantom metrics demonstrate that this mobile platform is fully viable for advanced microstructural neuroimaging in field studies.
Christoph S AIGNER (Berlin, Germany) , Nils C BODAMMER , Davide SANTORO , Björn FRICKE , Rüdiger BRÜHL , Franziska KAISER , Jan-Henrik SEIFERT , Thomas FEG , Sebastian SCHRÖDER , Simone KÜHN , Benedikt A POSER , Siawoosh MOHAMMADI
11:33 - 11:45 #54622 - PG005 Development of a robust open-source EEG system for concurrent MRI up to 14.1 T.
PG005 Development of a robust open-source EEG system for concurrent MRI up to 14.1 T.

The simultaneous acquisition of electroencephalography (EEG) and magnetic resonance imaging (MRI) not only unites two fundamentally different contrast mechanisms but also combines the sub-millisecond temporal resolution of EEG with the spatial resolution of MRI [1] that is on the order of millimeters thus offering a thorough investigation of brain function. Nevertheless, commercially available systems are often costly, typically certified only up to magnetic field strengths of 3T [2,3,4] and do not allow adaptations of the hardware (HW). In contrast, open-source designs enable the HW to be tailored to specific use cases and environments [5, 6]. This study introduces an open-source MR-compatible 8-channel EEG system, evaluated at field strengths up to 14.1T to investigate the capabilities of concurrent EEG-MRI at ultra-high field MR in the future.

EEG Hardware The developed HW is based on the OpenBCI and Cerelog projects [7, 8], tailored to be operated inside an MR scanner (Fig. 1) with an IC ADS1299 (Texas Instruments) as analog front-end. It is controlled by an ESP32C3 microcontroller, operating reliably at static magnetic fields up to 14.1T. The data are streamed via a fibre-optic link (5 Mbit/s) enabling galvanic isolation. A low-noise power supply based on batteries and linear regulators avoids switching converters which could disturb the MR acquisition. An optional pre-filter board provides a fixed-gain amplifier, a 5th-order Butterworth low-pass (1kHz), and a passive high-pass filter (2.25Hz). The HW is shielded by a copper enclosure to reduce interference with the MR system. The EEG provides 8 channels at 8kSps with 24bit resolution. Channels 1 and 2 were sampled with the analog pre-filter, channels 3 to 8 are sampled unfiltered for comparison. Test Bench A custom test bench was developed to benchmark the prototype and characterize MR compatibility independently of physiological effects (Fig. 2a). Ag/AgCl electrodes [9] were pressed onto a saline-soaked cloth simulating scalp impedance, and a battery-driven function generator provided defined signals. Due to limited space at 9.4T [10] / 14.1T [11], a compact saline-filled container was used in these cases instead (Fig. 2c). MRI For the 3T MR [12] a body coil is used for transmit, while for the 9.4T MRI a 16Tx32Rx head coil [13] and for the 14.1T MRI a surface coil is used. A GRE SMS-EPI sequence [14] was used for the measurements shown in Fig. 3, 4b/c, while a gradient- and RF spoiled GRE sequence was used for the noise characterization (Fig. 4a). The EEG data acquired at 3T were compared to those of a commercially available EEG [15]. To quantify the impact of the EEG HW on the MRI data, an SNR estimate was calculated as the ratio between mean signal intensity inside and outside a model solution inside the scanner.

The functionality of the test bench and the developed EEG HW was verified outside the scanner using an artificial input signal (10Hz, 100µV, Fig. 2d). Fig. 3 shows test signals in the µV range inside the 3T MRI with strong artefacts due to the MR gradient switching. Nevertheless, the EEG HW remains functional and the recorded signal does not saturate, crucial for future corrections [16] during postprocessing. Compared to commercial HW, the proposed HW exhibits largely identical signal dynamics (Fig. 3b), so it is assumed that the EEG functionality will be comparably good. First tests of the proposed EEG HW at 9.4T and 14.1T indicate that the HW may function properly under these conditions, too. While the proposed EEG HW worked reliably at 3, 9.4 and 14.1T, it corrupted the MR data (Fig. 4). To a certain extent measures such as shielding of the HW and moving the batteries inside the Faraday cage reduced the impact, while still further investigations and improvement is required.

The developed EEG HW operates robustly in static magnetic fields of up to 14.1T, but its reliable operation still needs to be tested with a broader variety of MR sequences. Although the analog pre-filter helps to suppress DC drift and high-frequency gradient artefacts and by this stabilizes the HW, these effects can also be compensated digitally or by reducing gain. A clock-synchronization interface to lock the HW to the scanner reference was implemented but not yet validated. This feature is expected to be essential for techniques such as Average Artefact Subtraction [16]. Further improvements regarding MR image quality could be achieved with MR-compatible batteries inside the copper shielded enclosure. In addition, the EEG functionality of the designed HW needs to be tested in vivo outside and inside the scanner.

An open-source EEG HW platform was developed and successfully validated at 3T, 9.4T and 14.1T providing open architecture, low cost, and signal quality comparable to a commercially available system. Even though currently the HW introduces artefacts in MR data, the prototype provides a foundation for an open, adaptable, EEG system at high and ultra-high field MRI.
Felix KRULL (Tuebingen, Germany) , Pavel POVOLNI , Vinod KUMAR JANGIR , Praveen IYYAPPAN VALSALA , Rolf POHMANN , Ruben SCHNITZLER , Ingmar KALLFASS , Svenja BRODT , Klaus SCHEFFLER , Sebastian MUELLER
11:45 - 11:57 #54701 - PG006 GAIA – Green Artificial Intelligence for Accelerated medical imaging: Sustainable and efficient diffusion MRI analysis.
PG006 GAIA – Green Artificial Intelligence for Accelerated medical imaging: Sustainable and efficient diffusion MRI analysis.

AI-based applications in MRI have shown substantial potential for improving image quality and diagnostic accuracy. However, the development and deployment of such models are energy-intensive, producing significant greenhouse gas emissions due to extensive computational demands for model training and inference[1,2]. Reducing this environmental impact is crucial to promote sustainable and equitable access to advanced healthcare technologies. This shift requires rethinking current AI paradigms, moving away from increasingly large and complex architectures toward more efficient, lightweight models. In this study, we present a new paradigm called GAIA: Green Artificial Intelligence for Accelerated medical imaging, where we exploit knowledge distillation[3,4] to compress large neural networks (“teachers”) into smaller models (“students”) that retain performance while reducing computational and energy costs. As proof of concept, we apply this approach to image synthesis, specifically predicting powder-averaged signals at high b-values from lower b-values. We build on an existing U-Net implementation[5].

Network architectures: We considered three 3D U-Net CNN networks, with 4 inputs (four b-shells<3000s/mm2) and 2 outputs (b=4000 and 6000s/mm2) (Fig.1): Teacher: baseline architecture proposed in 3 (depth=5; 4,118,219 parameters); Light Model: reduced-depth network, trained similarly to the teacher (depth=2; 52,848 parameters); Student: identical architecture as the light model, trained using knowledge distillation from the teacher (depth=2; 52,848 parameters). Loss functions: Both the teacher and light model were trained using tailored losses L_T and L_LM respectively, for tissue-dependent mapping, defined as weighted sums of L1 norms and the structural similarity index measure (SSIM): L_T(y,y ̂)=L_LM (y,y ̂)=1/N ∑_(n=1)^N |y_n-y ̂_n|+(1-SSIM(y,y ̂))+1/N_WM ∑_(n=1)^(N_WM)|y_n-y ̂_n|+1/N_GM ∑_(n=1)^(N_GM)|y_n-y ̂_n| With N the total number of voxels, and N_WM and N_GM the number of voxels in WM and GM respectively. Knowledge from the teacher was transferred to the student through a knowledge distillation loss L_KD, computed between the last latent representation of the teacher and student networks: L_KD(z,z ̂)=0.25/N ∑_(n=1)^N |z_n-z ̂_n|+0.75/N_WM ∑_(n=1)^(N_WM)|z_n-z ̂_n|+1.25/N_GM ∑_(n=1)^(N_GM)|z_n- z ̂_n| The total loss used for training the student network is: L_S=0.75*L_LM(y,y ̂)+0.25*L_KD(z,z ̂). Dataset: We used the WAND dataset[6] (161 subjects), acquired using a PGSE sequence with b-values=[200,500,1200,2400,4000,6000]s/mm2, respectively [20,20,30,61,61,61] uniformly distributed diffusion encoding directions, δ/Δ=7/24ms, and TE/TR=59/3000ms. Data were preprocessed as described in the WAND paper[6]. Training: Data were split into training, testing and validation subsets (80%-10%-10%). Each model was trained for 80 epochs using the Adam optimizer (learning rate=10-4). Training took ~30min for each model.

The distilled student network achieved a 98.7% reduction in model size compared to the teacher, while maintaining comparable prediction accuracy and precision. Qualitatively, synthesized high b-value signals closely matched the ground truth, demonstrating high structural fidelity and visual similarity (Fig.2). Quantitatively, the student outperformed the light model, showing lower relative error (Fig.2), mean squared error (MSE) and mean absolute error (MAE)(Fig.3). In terms of environmental efficiency, total energy consumption and estimated equivalent CO₂ emissions decreased 35% with reduced model complexity. This gain scales linearly with number of deployments, with the student producing ~20% less CO2 per deployment (Fig.4), highlighting the sustainability benefits of model distillation in MRI applications. These findings suggest that an optimal trade-off between performance and efficiency should be sought when developing new models.

A compact CNN obtained through knowledge distillation accurately predicted high b-value dMRI signals with performance comparable to a larger model. The smaller network required substantially less computation, reducing both energy consumption and CO₂ emissions. Beyond its technical performance, this approach offers practical advantages: lightweight models are easier to deploy on standard hospital hardware, mobile devices, and in low-resource environments. These findings demonstrate that efficient AI architectures can deliver high-quality results while advancing environmental sustainability in medical imaging.

We advocate for a shift in AI development within medical imaging, moving from prioritizing performance metrics alone toward evaluating efficiency and sustainability. We present GAIA, a new paradigm exploiting knowledge distillation to achieve this balance, enabling accurate, energy-efficient, and environmentally responsible deep learning solutions. Our results on high b-value prediction exemplify how greener AI can enhance both accessibility and sustainability in clinical imaging.
Maëliss JALLAIS (Cardiff, United Kingdom) , Matteo MANCINI , Marco PALOMBO
Sala Simfònica

"Thursday 01 October"

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B12
10:45 - 12:00

LTB1-1 Scientific session
Motion Correction and Image Fidelity

10:45 - 10:48 #54475 - PG063 Real-Time MRI with BART and OpenRecon.
PG063 Real-Time MRI with BART and OpenRecon.

In clinical practice, MRI scans are inseparably connected with images shown on the scanner console, enabling quality control and planning of subsequent scans. However, for MRI sequence and reconstruction development, scans are often done without immediate image reconstruction. This is in part due to the complexity of deploying reconstruction algorithms on clinical scanners. Thus, there is a gap between which reconstructions are theoretically possible, and what is actually available on a given clinical MRI scanner. Our scanner vendor, Siemens Healthineers, recently announced OpenRecon, a method to easily deploy new reconstruction algorithms. We have adapted BART (1), a toolbox providing state-of-the-art reconstruction algorithms, to work smoothly within the OpenRecon ecosystem. We show results from phantom measurements and use the new streaming feature in BART (2) to evaluate BART + OpenRecon for cardiac real-time MRI (RT-MRI).

OpenRecon relies on the Docker virtualization software (3) and the ISMRMRD data format (4). An OpenRecon application is a .zip-file which can be loaded by the MRI scanner and contains a serialized Docker container image. It stores the reconstruction algorithm to be used along with OpenRecon-specific metadata. Upon scanning, a container is created from this image and run with the NVIDIA container runtime, allowing access to GPU accelerators included in the reconstruction computer. Raw data is sent to the container over TCP in ISMRMRD streaming format (4). The container then responds with the reconstructed images. BART (1) is an MRI toolbox providing various reconstruction algorithms. A tool to work with ISMRMRD data has been available in BART for some time, however it was previously limited to static ISMRMRD files. In this work, we have expanded this tool to also cover the ISMRMRD streaming format. ISMRMRD streams can thereby be translated to BART streams (2) and vice versa. BART streams enable the reconstruction to start as soon as the first measured k-space lines arrive, which is efficient and a prerequisite for applications such as RT-MRI. Building upon the extended ISMRMRD-tool, we have packaged BART as an OpenRecon application. During development, we found that OpenRecon is currently limited to Cartesian sequences, as the matrix size of received images needs to match what would be expected from a Cartesian acquisition. This poses a problem for non-Cartesian acquisitions, which are beneficial e.g. in RT-MRI. We have addressed this issue using a custom vendor reconstruction program, which mimicks the OpenRecon behaviour, but does not impose restrictions on the received images, and utilizes BART streams for simplicity. The same BART OpenRecon-Application can be used both with Cartesian sequences through the OpenRecon-framework, and with non-Cartesian sequences with our custom vendor reconstruction program. The actual BART reconstruction script can be chosen through a shell script placed in a directory on the scanner. The architecture is illustrated in Fig. 1. Measurements were carried out on a 3T Magnetom Vida (Siemens Healthineers, Erlangen). A standard Cartesian FLASH sequence was used in a 2D phantom measurement, once fully sampled and with 4-fold acceleration. Furthermore, to illustrate the real-time capabilities, a radial FLASH sequence implemented in the BART sequence framework (5) was used to obtain cardiac MR images from a healthy volunteer. Images were reconstructed using either the vendor-reconstruction, which employs GRAPPA (6) for acceleration, or with BART + OpenRecon using NLINV (7) or a sliding-window ajdoint NuFFT (8) method. All reconstructions were performed on the scanner hardware, accelerated with a built-in Tesla M60 GPU accelerator, and images directly shown on the console in real-time.

Fig. 2 compares vendor and BART reconstruction of standard Cartesian data. The BART NLINV reconstruction matches the image quality of the vendor reconstruction. In Fig. 3, we show a short axis-view timeseries from a single heartbeat. This reconstruction was shown in real-time on the scanner. Cardiac motion is well visible.

Our work enables efficient conversion between ISMRMRD and BART streams, and thereby provides access to various reconstruction algorithms within BART directly on Siemens MRI scanners. Due to the current limitation of OpenRecon to Cartesian trajectories, we have developed a custom vendor reconstruction program to apply our OpenRecon application to non-Cartesian acquisitions such as cardiac RT-MRI data. Using a sliding window reconstruction, we were able to visualize cardiac motion in real-time on the MRI scanner. Higher image quality is easily achieved by selecting another BART reconstruction, however an external computer or a stronger built-in GPU accelerator is then needed for real-time visualization.

Improvements in BART enable real-time MRI with BART and OpenRecon. Further development in OpenRecon is needed for non-Cartesian sequences.
Philip SCHATEN (Graz, Austria) , Martin UECKER
10:48 - 10:51 #54552 - PG064 Fast calibration for artifact-free wave encoded 3D MEGRE independent of sampling strategy.
PG064 Fast calibration for artifact-free wave encoded 3D MEGRE independent of sampling strategy.

Wave encoding [1] enables higher acceleration than standard linear readouts, but accurate trajectory knowledge is critical for artifact-free images. Field cameras and GIRF-based methods [2] require dedicated hardware or lengthy acquisitions, limiting clinical accessibility. Moreover, GIRF characterises a wide range of frequencies[3], while wave trajectories have one dominant frequency. Auto-calibrated techniques [4], [5] constrain the sampling scheme (fully sampled centre, CAIPI pattern…), hindering their use with for example Poisson Disk sampling (CPD) [6]. We propose an embeddable calibration with minimal time penalty (~8 TRs). It matches wave-encoded signal to ground truth (GT) signal —encoded by linear gradients. This enables rapid estimation of wave amplitude and timing delays prior to reconstruction.

CALIBRATION: For each wave-encoding axis in a (ME)GRE (Fig 1A), the module acquires N pairs of alternating GT/wave TRs (no readout gradient, Fig 1B). GT gradients encode a k-space range ≤ wave encoded range (Fig 1C). Wave TRs are averaged per direction to improve SNR. Fig 2 shows the processing pipeline and intermediate results: Pre-processing: Multichannel coil compression using SVD (retaining first mode) and upsample signals 20× to improve matching resolution. Outlier edge samples (1%) were discarded. Signal Matching: Using the nominal GT-Wave trajectory crossings, we determine time windows to search for signal matches. Per window, the k-space coordinate of the time-point of min|Wave_signal-GT_signal| is stored if signal difference < 2%. Curve fitting: A (co)sinusoidal model is fitted using bound weighted least squares. Weights are the absolute k-space coordinate divided by the signal difference to emphasise low-error and outer k-space matches. Correction factors: The scaling factor is the ratio of the fitted to nominal amplitudes. Time discrepancies between zero-crossings indicate delays. Trajectory correction: The wave component was isolated from the trajectory by subtracting an equivalent linear one before applying scaling and re-adding. We evaluated 5 sets of GT trajectories: 1) 4 inner ones, 2) 4 outer ones, 3) every 2, 4) one polarity and 5) all (Fig 3A). DATA COLLECTION: Data were collected on 3T Siemens Prisma system with a 20-channel head-neck receiver coil on a phantom (H2O+NiSO4+NaCl) and on 3 volunteers [7]. A MEGRE sequence, accelerated x6 by wave encoding and CPD [1], [6] was implemented in Pulseq[8]: res=1x1x1mm, FOV=[0.96 0.29 0.20], TR=46ms, TE1/∆TE/TE6=4.2/6.4/36.2ms, Tread=5ms, Wave cycles=30 (6kHz) (Fig 1A). To derive coil sensitivity maps and object masks, a low-res fully-sampled cartesian GRE was acquired. Calibration modules were acquired for 6kHz and 3kHz waves. Acquisitions were performed sagittally, meaning the 2nd and 3rd phase encoding directions (here Y and Z) are the physical gradients x and y. Reconstruction used pics function in BART[9] with trajectory input (10 iterations, L2=0.05). The relative out-of-object signal was used as a reconstruction artifact metric to be minimised.

The estimated amplitude scaling varied with trajectory set used (Fig 3A) and wave frequency (higher for 6kHz than 3kHz, Fig 3B). The largest artifact reduction (out-of-object signal: 0.0347 → 0.0202) was achieved with the set 2 (Fig 3A), despite remaining above standard linear readout (0.0113). The observation that outer gradients provided the best results suggests it is beneficial to perform matching in regions where a trajectory error results in a larger change in match timing. An in vivo example is shown in Fig 2D.

This proof-of-concept calibration was performed separately from the actual scan, which would allow mapping of temperature-related fluctuations of the GIRF. Positioning the module at the end of the sequence risks adding sensitivity to subject physiology (despite our short acquisition times) but would ensure each MEGRE wave acquisition is self-contained for successful reconstruction. The frequency dependence typically observed in GIRF measurements (higher amplitude damping for higher frequencies) was replicated. The method also encodes gradient delays, though the observed values (<1μs) were, as previously suggested [2], negligeable for the wave readout. Although the derived scaling factor corrected most visible artifacts, the artifact metrics did not match the linear case. Residual errors may be due to edge-induced frequency components of the sinusoidal gradients (reported in [2]), which would require a more complex amplitude modulation.

We present a proof-of-concept fast embedded wave calibration (with the 4 linear measurements demonstrated, the total additional duration would be ~368ms (8 TRs of 46ms)), enabling fast correction of gradient amplitude errors and delays that lead to ghost artifacts. Future work will validate the approach in vivo, use simulations to optimise the calibration design and expand it to wave-encoded radial acquisitions.
Eva GUZMÁN CHACÓN (Nijmgen, The Netherlands) , Martijn CLOOS , David G. NORRIS , José P. MARQUES
10:51 - 10:54 #54415 - PG065 On one-venc aliasing artifacts in Hadamard-encoded 4D-flow-imaging.
PG065 On one-venc aliasing artifacts in Hadamard-encoded 4D-flow-imaging.

Four-dimensional (4D) flow imaging enables quantification of cardiovascular blood flow by encoding flow into the phase of the MR signal [1]. The strength of the velocity-encoding gradient (venc) is a key acquisition parameter. It determines the dynamic range of a 4D flow sequence, outside of which velocity aliasing occurs. Different flow encoding strategies exist [2]. Conventional 4-point flow encoding uses one reference scan without flow encoding and one flow-encoded scan per spatial direction (Fig.1a). Aliasing along each direction is independent. The dynamic range of the flow measurement is (-venc, venc). Above and below, two-venc jumps occur due to the periodicity of the phase [3]. Hadamard-encoding, in contrast, combines two flow encoding directions per excitation (Fig.1b). A smaller dynamic range and coupled aliasing are expected. While multiple techniques exist for correction of aliasing in conventional encoding, this is not the case for aliasing in Hadamard-encoding, which may be more complicated to correct for. Hence, this work aimed to elucidate on aliasing artifacts in Hadamard-encoded aortic 4D flow measurements by means of experiment and simulation.

In an IRB-approved study (EK 058/22), 15 healthy volunteers were imaged at 1.5 T (Ambition X, Philips, Best, The Netherlands) using Hadamard-encoded 4D-flow scans with a venc of 150 cm/s [1]. Other key scan parameters included TR/TE 4.3/2.6 ms, Flip angle 6°, FOV 300 cm, 67 axial slices, acquired/ reconstructed resolution 2.3x2.5x2.5 / 1.6x1.6x1.6 mm³, halfscan factor 0.625, compressed sense acceleration 3, retrospective ECG synchronization, no respiratory synchronization, 25 reconstructed heart phases. For a volunteer with severe aliasing in the aortic arch, the aliasing behavior in the different velocity components was analyzed by line profiles. To examine the feasibility of a one-venc correction, negatively or positively aliased areas were manually segmented using ITK-Snap (v4.0, www.itksnap.org, [4]) and the respective velocity correction by plus or minus one venc was applied. Additionally, simulations were performed in Matlab R2023b (MathWorks, Natick, MA) based on the equations in [5]. A 3D-grid of nominal velocities between -300, 300 cm/s, increment 1 cm/s, was defined. Venc was defined as 150 cm/s. The expected phase shifts for all grid points were calculated (Eqns.1a-c). Background phase was set to 0 (Eq.1d). Aliasing was simulated using the “wrapToPi” function (Eqns.2a-d). Then, measured velocities vx, vy, vz (including wrapping) were simulated (Eqns.3a-c). Their aliasing behavior was analyzed by means of line profiles.

Experimentally, aliasing by plus or minus 150 cm/s was observed, subsequently referred to as one-venc aliasing (Fig.2, top row). We observed that aliasing could be coupled, i.e., occur in more than one spatial direction. Importantly, the occurrence of aliasing was not limited to integer multiples of the venc, but occurred at variable thresholds (see line profiles, Fig.3a,b). After performing the manual one-venc correction, the color plots and line profiles looked smooth (Fig.2, bottom row; Fig.3c). Simulations confirmed the one-venc aliasing at variable thresholds (Fig.4). In the corners of the rhombi, simulation predicted the conventional two-venc aliasing behavior at thresholds of plus or minus one venc.

We observed one-venc aliasing at variable thresholds in Hadamard-encoded 4D flow MRI measurements and could confirm these observations by simulations. A manual one-venc correction of the experimental data yielded first plausible results. However, a potential influence of the background phase on aliasing needs further investigation. Future correction algorithms should take into account this aliasing behavior, which is different from the well-known two-venc aliasing in conventionally encoded 4D flow MRI.

This study gives first implications for the correction of aliasing artifacts in Hadamard-encoded 4D flow measurements.
Teresa LEMAINQUE (Aachen, Germany) , Theresa DEGREIF , Tianai WANG , Levi JUHL , Nicolas GENDRON , Oliver WEBER , Michael NEIDLIN , Christiane KUHL , Shuo ZHANG
10:54 - 10:57 #54602 - PG066 Whole-brain Multiparameter Mapping using universal pulses with saturation and flip-angle correction.
PG066 Whole-brain Multiparameter Mapping using universal pulses with saturation and flip-angle correction.

It has been shown that segmented 3D-EPI can be used for time-efficient MPM acquisitions[1] which enables high-resolution MPM in reasonable scan-time. At-ultra high fields (UHF), B1 inhomogeneities impede accurate quantification, resulting in image artifacts in the parameter maps. This effects the cerebellum in particular. To overcome this, parallel transmit approaches have been proposed. In this work, we combine PUSHUP saturation[2,3] with water selective GRAPE-based excitation pulses[4] for UHF MPM acquisitions, including MTsat. Although both approaches strongly improve B1 homogeneity, accurate quantification requires the correction of residual saturation and flip angle variations. The hMRI toolbox[5] was adapted to account for different B1 maps for correction.

GRAPE-based excitation and PUSHUP MT saturation were implemented in a highly segmented multi-echo 3D-EPI sequence (see Figure 1). Using 3-fold skipped CAIPI acceleration (EPI factor 4), this sequence allows to measure MPM with a resolution of 0.6 mm in TA=14:10, including PDw (FA=5°,TR=34ms), T1w (FA=25°,TR=34ms), and MTw (FA=6,TR=50.5ms) images, each with four echo times (4.7,11.8,18.9,26ms). A CP version was also measured with identical setting, except for Gaussian saturation pulse and binomial excitation pulses. The MT saturation strength was maximized within the SAR restrictions. Additionally, individual-channel B1 maps were measured using 3DREAM[6], from which the saturation B1rms was calculated. Utilizing AFI[7], the local excitation flip angle was mapped. 5 subjects were measured in a Magnetom 7T-Plus (Siemens Healthineers) using a 8-channel transmit, 32-channel receive coil (Nova Medical). The 12 complex valued 3D-EPI volumes were denoised using dwidenoise[8] before MPM quantification was performed using the hMRI toolbox. The hMRI toolbox was modified to simultaneously correct for saturation and excitation inhomogeneities as in Figure 2. Here, fsat is the transmit field bias of the saturation pulse (as fraction of nominal B1rms), C a calibration constant[9], α is the local excitation flip angle, R1=1/T1, SMT the measured MT-weighted acquisition and S0 the apparent equilibrium signal which is derived by the hMRI toolbox from the PDw and T1w acquisitions. A calibration measurement identifies C=0.128 as optimal for the proposed UP measurements.

Figure 3 (top) compares the relative B1 histograms of the UP saturation, the UP excitation, and CP transmission. As compared to CP, both UP approaches substantially narrow the distribution. This results in strongly improved B1 homogeneity, as displayed in the bottom plot. The UP saturation exhibits residual inhomogeneities in the head-to-foot direction. Finally, UP excitation demonstrates the highest homogeneity, although a slight asymmetry in the left-right direction is present. Figure 4 shows the hMRI outputs for one subject. In the top row, a coronal slice of the calculated R1, R2*, PD and MTsat maps, measured with CP pulses, is shown. The bottom row shows the same slice, measured with universal excitation and saturation. Both R1 maps show very clear gray matter to white matter separation and the contrast is similar between UP and CP. However, strong artifacts can be seen in the cerebellum, if CP excitation is used. The R2* maps look almost identical. The PD maps also look quite similar, but the finer structures of the lower parts of the cerebellum are only visible with UP excitation. Because more SAR was allowed in CP mode, the MTsat values are higher. Thus, gray matter to white matter separation is better. This is especially obvious in the upper parts of the brain. However, pronounced image artifacts are visible in the cerebellum in the CP MTsat map.

By using a highly segmented multi-echo 3D-EPI with 3-fold acceleration, it was possible to acquire MPM data with a resolution of 0.6 mm within a scan-time of 15 minutes. B1-related image artifacts were substantially reduced by the use of UPs. PUSHUP saturation drastically homogenizes the saturation strength, compared to CP saturation. Especially, the long tails extending to extreme B_1 are effectively removed. Nevertheless, residual inhomogeneity can be observed in head-foot direction, caused by the coil geometry. As the transmit coils are placed in a ring around the head, the field drop-off in head-foot is similar in all coils. Consequently, PUSHUP cannot homogenize the field in this direction. The flip angle of the water selective GRAPE excitation pulses is even more homogenous. Remaining saturation and excitation inhomogeneities were corrected for in the proposed MTsat quantification which has been added to the hMRI toolbox.

While the parameter maps acquired in CP mode exhibited B1-related image artifacts in the cerebellum, those were effectively eliminated using universal pulses. Remaining inhomogeneities were individually corrected for, potentially improving quantification precision. However, this remains to be demonstrated in future test-retest measurements.
Yannik VÖLZKE (Bonn, Germany) , Daniel LÖWEN , Eberhard D. PRACHT , Rüdiger STIRNBERG , Difei WANG , Luke J EDWARDS , Baris UGURCAN , Alexander RADBRUCH , Tony STÖCKER
10:57 - 11:00 #54655 - PG067 Spectral analysis of phase equalization across 3D-EPI time series at 3T and 11.7T.
PG067 Spectral analysis of phase equalization across 3D-EPI time series at 3T and 11.7T.

The repetitive structure of functional MRI (fMRI) scans can be leveraged for self-navigated EPI phase corrections [1-2]. However, head motion is a major confounding factor in fMRI [3], which undermines the k-space correspondence over time and, thus, may harm phase corrections along a time series. Phase equalization enhanced by run-time stabilization (PEERS) [4] combines self-navigated phase correction [2] with run-time motion correction to maintain k-space correspondence over time and was shown to increase temporal signal stability at 3T [4]. Recently, PEERS was translated [5] to the Iseult 11.7T scanner [6], where susceptibility to motion and scanner imperfections become even more pronounced, competing with the BOLD sensitivity gains at higher field strength [7]. The present work compares signal stability and parameter spectra across field strengths and vendor platforms and identifies sources of EPI phase fluctuations over time series using a spectral analysis of PEERS parameters.

Phase equalization (Fig. 1) is a retrospective method for fine-tuning shot phase and frequency parameters relative to a reference EPI volume [2]. Relative phases are calculated for every shot echo-by-echo over the EPI train with respect to its peer shot from the first reference stack [2,4]. Phase and frequency estimates are derived from a linear fit of the relative phase over the EPI train. As a crucial element of PEERS, prospective motion correction (PMC) stabilizes k-space correspondence in run-time for exploiting redundancies over time. Servo navigation [8] was used for run-time 3D rigid motion, phase and frequency f0 correction per shot. Run-time gradient shimming [9] was added for 11.7T. 3D-EPI sequences were equipped with servo navigation and PEERS and optimized for a 3T [4] and a 11.7T [10] system. Six healthy volunteers and a phantom were scanned on a 3T Philips Ingenia at 2.5mm isotropic resolution, whole brain, flip angle=17.2°, TE=30ms, TR=64ms, volume-TR=2s, 2.2x1.8 acceleration, 300 volumes and 10:30 min scan time. Four healthy volunteers were scanned on the Iseult 11.7T scanner (Siemens platform) with 1.2mm isotropic resolution, whole brain, flip angle=13°, TE=19ms, TR=53ms, volume-TR=2.12s, 2x3 CAIPI acceleration, pF=6/8, 155 volumes and 5:30 min scan time. All scans were performed in accordance with local ethical regulations. A 0.8 mm isotropic MP2RAGE T1w image was acquired for reference. Short phantom scans were conducted at 3T to identify the sources of phase variations. For tSNR computation, realignment, co-registration to a reference and segmentation were done using SPM [11].

Figure 2 shows in-vivo f0 spectra from PEERS at 3T and 11.7T. f0 drift was removed by quadratic detrending to avoid interference with other spectral contents. Harmonics of the volume frequency fvol=1/TRvol are visible across platforms and field strengths. Both spectra comprise respiratory f0 fluctuations (gray boxes), which are correlated to a respiratory belt signal for the 3T data. Figure 3 shows phase equalization f0 spectra under various scan settings in a phantom at 3T without servo navigation. Compared to standard 3D-EPI (blue), the broad peak at 0.96 Hz is reduced by switching off the cryocooler (purple, Zoom 2). Further disabling slice encoding gradients (yellow) barely changes the results, while switching off all EPI gradients and SPIR fat suppression (red) strongly reduces the fvol-peak (Zoom 1). The remainder of the fvol-peaks (red) is small and matches reconstructions with simulated noise (black). In this simulation, the raw k-space data of each volume was replaced by the data from the first volume with different additive SNR-matched noise before reconstruction. Figure 4 shows improved tSNR by PEERS across platforms and field strengths. Note that tSNR is higher at 3T due to larger voxel size. PEERS with servo navigation increased gray matter tSNR on average over all subjects from 56.89 to 63.30 (11%) at 3T [4] and from 30.0 to 33.6 (12%) at 11.7T [5].

tSNR improvements by PEERS with servo navigation have been confirmed across field strengths and vendor platforms (Fig. 4). The spectral analysis shows that PEERS’ f0 estimates capture drifts, cryocooler activities, fvol-harmonics driven by the EPI gradient-related vibrations and eddy currents (Fig. 3) as well as respiration in-vivo (Fig. 2). The simulation (Fig. 3) illustrates an underlying artifact propagation characteristic of the phase equalization algorithm at multiples of fvol that is caused by the volume-wise referencing structure of the algorithm. Noise propagation at fvol-harmonics probably remains, because the noisy shots from the reference stack are repeatedly used (every TRvol) for phase estimation. Note that this study compared sequences that were optimized for the respective scanners and focused on relative tSNR gains by PEERS across field strengths and vendor platforms. Absolute SNR across field strengths was studied previously [12] and not targeted here.
Malte RIEDEL (Hamburg, Germany) , Matthias SERGER , Philipp EHSES , Joseph OBRIOT , Rüdiger STIRNBERG , Franck MAUCONDUIT , Caroline LE STER , Tony STÖCKER , Nicolas BOULANT , Klaas PRUESSMANN
11:00 - 11:03 #54677 - PG068 Towards run-time 3D motion correction for 2D imaging by servo navigation.
PG068 Towards run-time 3D motion correction for 2D imaging by servo navigation.

Servo navigation geometry has proven a promising approach for rigid-body motion correction [1-3]. Used for 3D sequences so far, servo navigation is equally attractive for 2D scans, pairing slice-selective excitation with 3D navigator readouts. However, sensitivity to motion then needs to be achieved in a somewhat different way. In 3D, largely the same material is excited in each repetition. With thin slices, in contrast, motion causes substantial relative change in material actually excited. While a potential confound at first sight, here we demonstrate that the related signal change can actually be exploited for servo navigation of 2D scans. As previously reported in a PhD thesis [4], this can be achieved by involving slice shifts and rotation at the referencing stage. In this work we demonstrate servo-navigated 2D imaging in vivo and explore the transition from 3D to 2D by studying sensitivity and fidelity for decreasing slab thickness.

In 2D imaging, the material in the excited slice changes significantly under out of plane motion of the patient. To be able to correctly interpret the resulting change in navigator signal in terms of motion estimates, this change in anatomy in the excited slice needs to be reflected in the calibration of the model matrix. Following the approach proposed in [4] we achieve this by acquiring extra reference navigators with small through-plane shifts δz and rotations (δα,δβ) of the scanner frame of reference. Subsequently, the derivatives can be determined using finite differences. Shifting and rotating the scanner frame of reference mimics the effect of changing anatomy in the excited volume. In-vivo 2D-GRE data with 20 slices at 0.6x0.6x3mm3 resolution was acquired on a 3T Philips scanner using a 16-ch head coil with and without motion instructions. Additionally, the traditional and alternative model calibrations were tested for GRE imaging through step response experiments on a phantom [1] in which the scanner frame of reference was instantaneously shifted or rotated by 2mm and 2 deg, respectively, in the through-plane directions. The convergence of the PMC back to the original orientation was traced. Navigator start times and repetition times were kept constant throughout the scans at 1.07ms and 68ms, respectively. A flip angle of 5° was used. For fair comparison of the motion correction capabilities of the models, the varying phase encoding gradients where set to zero throughout the step response scans. In a last experiment, using both a traditionally and an alternatively calibrated servo navigation model, a 15mm excited volume was imaged while pushing the patient bed approximately 1 cm in the z-direction.

Figure 1 shows in-vivo results from Ref. [4, Fig. 3.11] with and without motion correction. Motion artifacts are mitigated by 2D servo navigation in case of instructed motion. The first column of figure 2 shows the step responses of a servo navigation model calibrated using the traditional approach and reacting to instantaneous offsets for out of plane rotations and translation. The number of iterations until convergence increases considerably for decreasing slab widths. This indicates a loss of encoding power for out of plane motion. The second column of figure 2 shows the results of the same step response experiments with a model calibrated using the alternative method accounting for changing anatomy in the exited slabs. In this case convergence speed is preserved when moving to thinner slabs. Figure 3 shows standard deviations for all motion parameter estimates for the models calibrated using the alternative approach for decreasing slab widths. In contrast to the in-plane motion parameters, for through-plane motion (z-translations and α,β-rotations), the standard deviations show a plateau or even a decrease when slabs reach a thickness between 40mm and 20mm. Figure 4 shows the images as well as the corresponding motion estimates during the table push experiments using a traditionally calibrated and an alternatively calibrated model.

As expected, the traditional calibration scheme for servo navigation results in a loss of encoding power for through-plane motion when decreasing the slab width. This encoding power is convincingly preserved when using the alternative calibration approach which accounts for the change of excited anatomy due to motion. The weight of the extra information due to changing anatomy is directly related to the volume fraction of the changing anatomy in the slab. This volume fraction increases for decreasing slab widths. The fact that, upon decreasing slab width, we observe plateauing and even slightly decreasing standard deviations specifically for the out of plane motion parameters indicates that, if one accounts for it, the changes in excited anatomy indeed form an additional source of encoding information. The investigated calibration scheme can be leveraged in the future for 3D motion correction in various 2D imaging scenarios.
Thijmen SCHOUTEN (Zurich, Switzerland) , Malte RIEDEL , Thomas ULRICH , Klaas PRÜSSMANN
11:03 - 11:06 #54386 - PG069 A randomized Hilbert trajectory for pulsation artifact suppression and low eddy currents.
PG069 A randomized Hilbert trajectory for pulsation artifact suppression and low eddy currents.

Fast 3D steady-state GRE acquisitions are widely used in MRI due to their high efficiency and flexibility in generating diverse image contrasts. However, conventional line-by-line 2D phase-encoding can produce pulsation artifacts from cardiac and other semi-periodic physiological fluctuations [1]. Randomizing the acquisition order can decohere these artifacts into global noise, but fully random sampling introduces large k-space jumps, leading to both eddy-currents effects and increased sensitivity to subject motion, which may lead to their own artifacts. Recently, we introduced a locally scrambled acquisition order that reduces the pulsation artifacts based on a predefined frequency threshold [2]. Nevertheless, this approach can still produce large k-space transitions. To mitigate such large transitions, semi-randomized trajectories with intrinsically small k-space steps can be used, for example the Hilbert space filling curve [2, 3]. Although the Hilbert-curve is a deterministic semi-randomized trajectory, it still retains internal coherence that may translate into structured artifacts. Here, we propose a randomized Hilbert-curve-based trajectory designed to reduce these internal coherences. To our knowledge, such a randomized implementation has not been previously described in the literature. We evaluated the proposed trajectory in simulation and in-vivo using a Pulseq-based 3D GRE at 7T, implemented to support arbitrary acquisition ordering [4].

A Hilbert curve is generated by a recursive process as depicted in Fig. 1A. At each recursive step, every square is subdivided into four equal squares with the same internal trajectory, albeit rotated. This recursive construction can easily be randomized by randomly splitting each square to four non-equal rectangles while preserving the general shape and orientation of the local sub-trajectories (Fig. 1B). Such a randomized subdivision reduces the internal coherence of the deterministic Hilbert curve while maintaining its locally continuous traversal of k-space. It can be shown that this randomized splitting procedure, under suitable constraints on the subdivision point (requiring even or odd step counts where appropriate), can be applied to rectangles of arbitrary dimensions. To numerically assess the benefit of the suggested randomization, a point source with an oscillating phase was simulated, as in [2], to model a pulsation artifact. The acquisition process was repeatedly simulated across a range of oscillating frequencies. The resulting k-space data were Fourier transformed to generate images, and the maximum artifact intensity was estimated for each frequency. Low values indicate that the oscillation artifact was spread more evenly over the image, producing a less visually conspicuous pattern, whereas high values indicate that the artifact remained spatially concentrated and therefore more apparent in the reconstructed image. Finally, a volunteer was scanned in a 7T MRI (MAGNETOM Terra, Siemens, Erlangen), to compare pulsation artifacts in 3D GRE acquisitions using different trajectories (see Fig. 3 for details). The deterministic Hilbert curve was replaced by a deterministic Generalized Hilbert one [5] due to the dimensions of the acquisition matrix.

Fig. 2A compares three trajectories: conventional (ordered), Hilbert, and the proposed randomized-Hilbert acquisition, in an illustrative 2D example. As can be seen in Fig. 2B, the simulation of the maximal artifact intensity demonstrates that the randomized Hilbert trajectory curve produces a max. artifact which is basically the lower-bound envelope of the deterministic Hilbert curve case, as desired. In contrast to the fully random sampling case, the maximal artifact intensity decreases gradually with frequency (Note that at zero frequency, all trajectories give the same result, as nothing changes with time). Nevertheless, the minimum artifact level achieved by of the randomized Hilbert trajectory is still higher than that of the fully randomized acquisition case. Fig. 3 presents representative images from the in vivo volunteer scans. Both the Generalized-Hilbert and the randomized-Hilbert trajectories reduced pulsation artifacts compared with the conventional ordered line-by-line acquisition, with the randomized-Hilbert trajectory providing a modest additional improvement.

A randomized-Hilbert acquisition ordering was developed to reduce eddy-current effects while preserving a semi-randomized sampling pattern. Simulation showed improved performance over the conventional Hilbert curve, and initial in vivo results showed reduced pulsation artifacts. Nevertheless, some residual artifacts were observed, likely related to the overall circular-like acquisition behavior, similar to effects previously reported for spiral-like Cartesian trajectories. Future work will focus on further generalizing the randomization scheme and combing the randomized Hilbert and local-scrambling approaches.
Amir SEGINER (Rehovot, Israel) , Rita SCHMIDT
11:06 - 11:09 #53683 - PG070 Motion-Compensated Free-Breathing T1-Weighted Liver Imaging with Focused Navigation at 0.55T.
PG070 Motion-Compensated Free-Breathing T1-Weighted Liver Imaging with Focused Navigation at 0.55T.

Abdominal MRI is typically performed during breath-hold to reduce motion artefacts; however, this can be challenging in elderly or critically ill patients [1]. Free-breathing acquisition present a better tolerated alternative although respiratory, cardiac, and peristaltic motion may degrade image quality. Motion-resolved reconstruction of free-breathing data groups the acquired data into respiratory bins, producing motion-reduced but lower-SNR respiratory phase-specific images compared with reconstructions that use the full dataset [2]. When dynamic information is unnecessary, reconstruction of a single high SNR respiratory motion-corrected 3D liver volume is preferable. Focused navigation (fNAV) has shown promising results in cardiac imaging through retrospectively estimation and correction of respiratory and cardiac motion [3]. This study tests the hypothesis that fNAV can be applied for free-breathing 3D T1-weighted liver MRI at 0.55T.

Four healthy volunteers (4F; 29.5±8.0 years) were scanned on a 0.55T MRI system (MAGNETOM Free.Max, Siemens Healthineers, Forchheim, Germany) using a free-breathing radial GRE sequence (1.4mm3; TA: 8:47min; TR/TE: 6.4/2.7ms; 3D phyllotaxis trajectory; 12-ch body+9-ch spine coil). The fNAV algorithm estimates a respiratory motion signal from self-navigation data (superior-inferior (SI) projections) and models respiratory motion as locally 3D translational proportional to this signal [3]. The scaling factors are iteratively optimized by minimizing image-gradient entropy within an ROI [3]. The resulting motion model is then used to apply k-space phase corrections, enabling reconstruction of a single motion-compensated 3D image from free-breathing data [2,3]. For the current study, fNAV was applied using two motion‑compensation strategies (Figure 1): rigid (IR) and non‑rigid (INR). Both were compared against motion-resolved reconstruction, where data were retrospectively reconstructed into 4 respiratory bins using the Free-Running Framework [2], with respiratory motion extracted from a SI projection signal. For completeness, non-motion corrected images (I0) were also generated and compared. Image quality was assessed through visual inspection, displacement field analysis, and liver dome edge sharpness quantification. Sharpness was measured as the inverse of the 10–90% intensity transition width, derived from sigmoid fitting of perpendicular intensity profiles along a manually delineated edge contour.

Representative motion-compensated volumes are shown in Figure 2. Both rigid and non-rigid fNAV reconstructions yielded a sharper liver dome and better vessel depiction compared to the uncorrected reference. Notably, rigid compensation wrongly deformed static tissues (e.g. spine), whereas non-rigid compensation selectively targeted moving structures, preserving anatomical coherence globally. Displacement fields (Figure 3) confirm that respiratory-induced liver motion is predominantly along the SI direction (u_z, up to ~15mm), with negligible left-right (u_x) and anterior–posterior (u_y) components. The displacement magnitude map further shows that the largest corrections are concentrated in the central liver and upper abdominal region, while background areas exhibit near-zero displacement, consistent with true physiological motion rather than noise. Sharpness measurements were consistently higher for all motion-compensated reconstructions (IR: 0.29±0.13 mm⁻¹; INR: 0.30±0.11 mm⁻¹; motion-resolved: 0.24±0.07 mm⁻¹) compared to the uncorrected reference (I0: 0.07±0.02 mm⁻¹) (Figure 4). IR and INR yielded comparable results, while motion-resolved reconstruction showed slightly lower sharpness values. No formal statistical comparison was performed given the limited sample size(n=4).

fNAV demonstrated improved liver dome sharpness over the uncorrected reference and is comparable to motion-resolved reconstruction. The comparable performance of IR and INR at the liver dome reflects the predominantly translational nature of diaphragmatic motion along the superior–inferior direction, which is adequately captured by both strategies. The added value of INR lies rather in its spatial selectivity: it avoids deforming structures with little or no respiratory motion. The spatially adaptive correction fields of INR are in principle better suited to capture the non-linear intra-organ motion gradients known from 4D-CT/MRI studies [4,5], where central liver regions undergo larger diaphragmatic excursions than peripheral or posterior areas. However, sharpness was quantified only at the liver dome in this study; whether INR provides additional benefit over IR in deeper liver regions remains to be assessed.

The current study shows that it is feasible to use fNAV reconstruction for free-breathing liver MRI at 0.55T, producing a single sharp 3D volume from the full dataset. Limitations include a small sample size and absence of pathology; larger patient studies are needed.
Ilaria BROVEDANI (Lausanne, Switzerland) , Marco MUELLER , Christopher W ROY , Jean-Baptiste LEDOUX , Naik VIETTI VIOLI , Clarisse DROMAIN , Ruud B. VAN HEESWIJK , Jerome YERLY , Matthias STUBER , Tom HILBERT , Anh T. VAN
11:09 - 11:12 #53322 - PG071 Partially spoiled gradient echo imaging for 3D free-breathing simultaneous ventilation and perfusion assessment of the human lungs.
PG071 Partially spoiled gradient echo imaging for 3D free-breathing simultaneous ventilation and perfusion assessment of the human lungs.

Functional lung MRI is challenging due to respiratory and cardiac motion, low proton density, and short T2* relaxation times. Currently, simultaneous non-contrast-enhanced functional imaging of the lung is time-consuming, as established techniques are 2D and rely on the inflow effect for perfusion assessment [1,2]. Moreover, state-of-the-art 3D methods are limited to ventilation mapping, as the inflow effect, used for 2D perfusion, is not applicable to 3D lung acquisitions [3,4]. Recent work has demonstrated, that T2-weighted sequences capture the effects of motion in the inhomogeneous gradients of the lung [5]. This can be described by T2diff and enables the assessment of lung perfusion. One approach to acquire 3D T2-weighted gradient echo images is the use of partially spoiled gradient echo sequences [6,7]. Here, we propose the use of PArtially spoiled THree dimensional FUnctional Lung imaging (PATHFUL) with partially spoiled gradient echo sequences for simultaneous assessment of lung morphology, ventilation and perfusion in free-breathing without the use of contrast agents.

We used a Pulseq-generated [8] 3D partially spoiled stack-of-spirals sequence with 30 interleaved spirals per partition and 20 partitions. Sequence parameters were: TR = 3 ms, TE = 0.06 ms, FA = 12°, RF spoiling increment = 0.7°, FOV = 60 x 60 x 30 cm^3, slab thickness = 1.5 cm, in plane resolution = 5 x 5 mm^2 with a total acquisition time of 10 min and ECG gating. Imaging was performed on a 3T MAGNETOM Prismafit system (SIEMENS Healthineers, Forchheim, Germany) with an 18-channel body coil. The study was approved by the local ethics board, and written informed consent was obtained prior to scanning. The data were reconstructed with self-gating to provide morphological lung images in different breathing states. To achieve this, the DC-signal, i.e. the first points of spiral readout in the central partition, was used to sort the data into ten breathing states, taking the derivative of the DC-signal in account. The images were 3D-registered using Elastix [9,10]. Ventilation maps V were calculated voxelwise from the signal S as proposed by Zapke et al. [11]. V = (S_exhale-S_inhale)/S_exhale (1) For perfusion analysis, spiral arms from the expiratory breathing phase (30 % of all data) were sorted into six cardiac phases by dividing the ECG-derived RR interval into equal time bins starting at the R-wave. This yields images of the lung at expiration across different cardiac phases. Relative perfusion maps P, were calculated voxelwise from the image phase φ over a pseudo cardiac cycle as: P = (φ_max - φ_min) (2)

Fig. 1 shows two coronal lung slices (a-j) and (k-t) in different breathing states. The red line highlights the motion of the diaphragm and liver over one pseudo breathing cycle. Fig. 1 (a) and (k) show the lungs during exhalation, while (f) and (p) show the lungs during inhalation. These different breathing states were registered, and the signal evolution of two representative voxels are shown in Fig. 2. The signal curves show a similar pattern with a minimum in breathing phase 6 and a maximum in phase 1 for the blue marked voxel and in phase 9 for the orange marked voxel. Fig. 3 (a) and (b) show a phase image of the second (a) and fifth (b) time point of cardiac cycle. Blood vessels and lung parenchyma show lower phase values in (a) than in (b). The phase evolution over the cardiac cycle in two voxels is shown in Fig. 3c. Both phases reach their maximum at the fifth point and the minimum in the second (blue) or third (orange) point of the cardiac cycle. The morphology (a), ventilation (b) and relative perfusion (c) of a coronal lung slice are shown in Fig. 4. The ventilation (Fig. 4b) was calculated according to Equation (1) from the registered images and is in agreement with previously reported ventilation values [3]. In the perfusion image (Fig. 4c) the vessels and lung parenchyma are clearly visible.

PATHFUL enables simultaneous morphological and functional imaging of the lung in 3D, during free-breathing and without contrast agents. The T2-weighted image contrast, together with the ability to sort the k-space data into a pseudo cardiac cycle within a defined respiratory state, enables the first approach for proton 3D lung perfusion imaging. The phase images in Fig.3 (a), corresponding to the different heart phases, indicate that the motion of blood in the field gradients of the lungs influences the phase. The achievable spatial resolution in acceptable clinical acquisition times will be subject of future work. Further studies against established perfusion methods are required.

We have shown the feasibility of PATHFUL, a partially spoiled gradient echo sequence, enabling the simultaneous assessment and visualization of lung morphology, ventilation and perfusion within one 3D free-breathing non-contrast-enhanced acquisition.
Clemens MEY (Würzburg, Germany) , Jona SIPPEL , Hannah SCHOLTEN , Julius HEIDENREICH , Viktor HARTUNG , Matthias ANDERS , Simon VELDHOEN , Herbert KÖSTLER
11:12 - 11:15 #53536 - PG072 Comparison of dynamic lung MRI during forced expiration using a 3D UTE FLORET trajectory and a 3D UTE radial trajectory with anisotropic FOV.
PG072 Comparison of dynamic lung MRI during forced expiration using a 3D UTE FLORET trajectory and a 3D UTE radial trajectory with anisotropic FOV.

Forced expiration (FE) represents a central maneuver in pulmonary diagnostics and serves as the basis for key spirometric indices such as the forced expiratory volume in one second (FEV1), which are widely used to assess airway obstruction and lung function.[1,2] Still, spirometry provides only global readouts and lacks information about the spatial distribution and regional mechanics of lung deflation. Dynamic MRI of this process is particularly demanding, as it must cope with rapid motion, substantial signal changes, and the simultaneous need for high temporal resolution, sufficient spatial coverage, and adequate signal-to-noise ratio (SNR).[1] Previous work by Berman et al.[1] used a stack-of-stars trajectory for assessing the forced expiratory process. We recently reported the applicability of a 3D UTE FLORET (Fermat looped, orthogonally encoded trajectories)[3] trajectory for un-gated dynamic lung MRI of FE in vivo with a temporal resolution of 200 ms and an isotropic resolution of 5 mm.[4] In this work, we compare 3D UTE FLORET with a 3D UTE radial trajectory using variable anisotropic FOV and spiral phyllotaxis (abbr. as RadialVASP)[5] for ungated dynamic MRI of forced expiration, focusing on image quality, artifact behavior, and achievable temporal resolution.

All data were acquired on a 3T MAGNETOM Prisma Fit scanner (Siemens Healthineers, Erlangen, Germany) using the body and spine coil arrays, resulting in a total of 20 receive channels. Both trajectories were implemented in Pulseq.[6] Sequence parameters were: FLORET (TR=1.82 ms, TE=0.04 ms, ADC duration=1.28 ms, α=1°, FOV=350x350x350 mm, resolution=5.0 mm) RadialVASP (TR=0.75 ms, TE=0.04 ms, ADC duration=0.20 ms, α=1°, FOV=350x250x350 mm, resolution=5.0 mm) For FLORET, a fully sampled k-space consisted of 1869 spirals (~3.4 s) and its acquisition was repeated ten times (back-to-back) to capture the forced expiration maneuver safely. Fast spoiling[7,8] and a Fibonacci reordering scheme[8] using Fibonacci number 89 was applied. For RadialVASP, a fully sampled k-space consisted of 12273 spokes (~9.2 s) and the acquisition was repeated four times. Fast spoiling[7,8] and a Fibonacci reordering scheme[5] using Fibonacci number 34 was applied. A healthy volunteer (f/165 cm/57 kg) was instructed to inhale to maximum inspiration and hold this state for ~5 s (“static front”), perform the forced expiration maneuver (“dynamic phase”), and then hold the state of maximum expiration (“static end”) for 5 s (Figure 1). For reconstructing in vivo data, sensitivity maps were modeled as time-dependent by estimating sensitivity maps for the static front and end of the acquisition and interpolating between them using the DC signal (Figure 2). Static coil sensitivities were determined by Joint SENSE calibration.[9,10] The measurements were un-gated, relying on a single continuous forced expiration without averaging or binning across cycles. The respective acquisition was initially divided into undersampled frames of the desired temporal footprint. These were then reconstructed using an iterative, temporal total variation (TV)-regularized, non-Cartesian SENSE reconstruction (Figure 2). Different temporal footprints, i.e. undersampling factors were tested.

The FE maneuver was initially reconstructed with a temporal resolution of 200 ms; both with and without TV regularization (Figure 1). The regularization weight was optimized empirically. The FE maneuver was then reconstructed using shorter temporal footprints of 100 ms and 50 ms (with TV and same hyper-parameter as for 200 ms, Figure 3). Although lung boundaries are identifiable in both trajectories without TV, its application clearly improves image quality (Figure 1). However, both methods exhibit reduced quality during the FE maneuver, likely due to inaccuracies in interpolated coil sensitivities. In this preliminary visual comparison, RadialVASP showed fewer apparent undersampling artifacts and improved boundary sharpness compared with FLORET across the tested temporal resolutions (Figure 3). As higher acceleration factors improve diaphragmatic sharpness, the reconstruction model appears to cope with the undersampling required to reduce motion per time frame.

RadialVASP requires significantly higher acceleration factors than FLORET for equivalent temporal resolutions (e.g., R=46 vs. R=17 at 200 ms), but facilitates an anisotropic FOV in the coronal direction with isotropic resolution. While both trajectories yielded high-quality images during rapid breathing, RadialVASP was slightly superior to FLORET, as assessed by visual examination.

These preliminary results suggest, that RadialVASP represents a promising alternative to FLORET for high-temporal-resolution MRI of forced expiration. The use of an anisotropic FOV may improve artifact behavior despite higher nominal undersampling. Further evaluation in larger cohorts, including patients with obstructive lung disease and correlation with spirometric parameters, is warranted.
Sebastian SCHEIDEL (Würzburg, Germany) , Viktor HARTUNG , Simon VELDHOEN , Tobias WECH
11:15 - 12:00 Visit posters PG063-PG072.
Sala de Cambra

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ET2-3-Principles and Applications of CT-like MR sequences
in Clinical Practice

ET Clinical
10:45 - 11:05 The MRI Physicist's Perspective. Emil LJUNGBERG (Clinical Scientist) (Speaker, Lund, Sweden)
11:05 - 11:25 The MRI Radiographer's Perspective. Switwinder GHOTRA (Scientific Adjunct) (Speaker, Lausanne, Switzerland)
11:25 - 11:45 The Radiologist's Perspective. Diogo PEREIRA (Radiologist) (Speaker, Vigo, Spain)
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LTD1-1 Scientific session
Project Abstracts & Registered Reports

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ECRC
Make Your Research Future-Proof

10:45 - 11:10 Beyond Tools: Building a Culture of Open and Reproducible MR Science;. Francesco SANTINI (CPC Member) (Speaker, BASEL, Switzerland)
11:10 - 11:35 From Fragile Scripts to Robust Pipelines: Reproducible MR in Practice;. Omer Faruk GULBAN (Researcher) (Speaker, Maastricht, The Netherlands)
11:35 - 12:00 From Chaos to Structure: Designing MR Datasets for Reuse and Longevity. Christophe PHILLIPS (Speaker, Liège, Belgium)
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I11
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Poster 1
FT1 - Poster Perfusion & Flow | Low Field MRI

11:15 - 12:00 #54494 - P203 Cardiac-resolved MRE reveals vessel-centred cerebral stiffness pulsation.
P203 Cardiac-resolved MRE reveals vessel-centred cerebral stiffness pulsation.

Cerebral arterial pulsation (CAP) induces cyclic mechanical changes in brain tissue that reflect vascular compliance, a key determinant of cerebrovascular health [1]. This study uses a novel 3D spiral, cardiac-resolved magnetic resonance elastography (MRE) sequence to quantify stiffness variations across the cardiac cycle and perform region-specific analyses based on time-of-flight–derived vascular segmentation.

Fifteen healthy volunteers (age 30 ± 6.5 years) underwent 3D MRE on a 3T Siemens Lumina scanner using a GRE-based spiral sequence to assess shear wave speed (SWS) across the cardiac cycle, with a 70 ms temporal resolution and 2 mm isotropic spatial resolution. Two subjects were excluded from further analysis due to image artefacts, most likely related to temporarily inconsistent ECG-triggering. SWS maps were reconstructed using k-MDEV (BIOQIC-Apps) [2]. To account for significant inter-subject offsets in absolute SWS values, results were expressed as the mean SWS change relative to the value at the peak of the ECG-derived R-wave. The cardiac cycle was normalized by adjusting the 10 acquired cardiac phases for individual heart rate differences and interpolating them onto a common temporal grid. Time-of-flight imaging enabled vessel-based analysis, and anterior cerebral artery flow was measured using single-slice 2D phase-contrast MRI.

Cardiac-resolved MRE consistently demonstrated cyclic stiffness variations throughout the cardiac cycle, with stiffness increasing during systole and decreasing during diastole (Fig. 1a). Figure 1b provides a visual representation of this effect by combining all subjects into a single map following registration to MNI atlas space. In addition, Figure 2 shows the difference in stiffness for systole, relative to diastole in global brain tissue (GBT), grey matter (GM) and white matter (WM). Across all regions, brain tissue stiffness is significantly higher during systole, compared to diastole. However, this effect seems more pronounced in grey matter. Finally, a clear spatial gradient in stiffness is observed in the brain tissue surrounding the anterior and middle cerebral arteries (Fig. 3), with stiffness decreasing as distance from the vessel increases. This pattern is present during both systole and diastole, but is more pronounced in systole. Overall, these results indicate consistent vessel-centered stiffness gradients, with stronger spatial changes during systole.

Overall, the data demonstrate a clear and significant systolic peak in brain tissue stiffness, consistent with earlier ultrasound elastography findings [3]. This suggests that during systole, arterial expansion induces CAPs which propagate through the brain and temporarily increase local tissue stiffness. Moreover, the effect was more pronounced in grey matter compared with white matter. This was expected, as vessels within the field of view are mostly surrounded by either cerebrospinal fluid or grey matter. In addition to this, grey matter inherently has lower baseline stiffness than white matter, making it potentially more sensitive to pulsatile mechanical changes. In addition, significant vessel-centred stiffness gradients were observed, with higher stiffness near the vessel wall that decreases with distance. These gradients were more pronounced during systole, indicating that vascular expansion during the systolic phase is associated with a stronger variation in surrounding tissue stiffness. During diastole, a significant but weaker gradient was still present. This may be explained by residual systolic contributions within the diastolic time window. In this study, cardiac phase alignment was based on the mean heart rate during the MRE acquisition. As a result, local beat-to-beat variations within a subject may still occur, causing some time points with locally higher heart rates to be incorrectly assigned to systolic or diastolic phases. Finally, the propagation of CAPs could not be resolved in the current dataset, because its propagation velocity exceeds the temporal resolution of the acquisition.

Using a novel cardiac-resolved 3D spiral MRE sequence, we demonstrate that cerebral stiffness pulsations are temporally and spatially linked to vascular dynamics. These findings confirm previously reported ultrasound findings and support cardiac-resolved MRE as a non-invasive marker of cerebrovascular compliance.
Merijn CALIS (Ghent, Belgium) , Yanglei WU , Tom MEYER , Patrick SEGERS , Pim PULLENS , Ingolf SACK , Jakob SCHATTENFROH
11:15 - 12:00 #54614 - P204 Accelerating phase-contrast MRI using fast interleaved radial mixing (pc-firm).
P204 Accelerating phase-contrast MRI using fast interleaved radial mixing (pc-firm).

Phase-contrast (PC) MRI enables non-invasive, quantitative assessment of blood velocity, which is essential for evaluating cardiovascular diseases. However, conventional PC-MRI has few limitations, e.g. selecting a single velocity encoding (VENC) to trade‑off between phase aliasing and velocity‑to‑noise ratio (VNR). This trade‑off is particularly problematic in vascular regions with a wide velocity range, such as aortic branches. Dual-VENC sequences address this issue but typically increase the acquisition time by factor two [1,2]. Long acquisition times also constrain three-dimensional (3D) PC-MRI [3,4]. Here we introduce phase-contrast fast interleaved radial mixing (PC-FIRM), a novel approach that accelerates PC-MRI by interleaving radial projections acquired with different velocity encoding parameters into a shared k-space with k-space-weighted image contrast (KWIC) [5]. We apply this concept to both dual-VENC and 3D PC-MRI to reduce acquisition time while preserving VNR and phase anti-aliasing performance.

The PC-FIRM sequence was implemented by modifying a Bruker Flowmap sequence to employ radial encoding with golden-angle ordering. Schematic illustration of the sequence design and the k-space mixing is shown in Fig. 1. The upper panel shows the dual-VENC implementation: the polarity (positive, negative) and strength (low-VENC, high-VENC) of the bipolar velocity-encoding gradients are interleaved across radial spokes to fill the k-space, as depicted in the mixing scheme. To accelerate k-space acquisition, PC-FIRM fills the high‑spatial‑frequency information from all acquired velocity-encoding parameters, while low‑spatial‑frequency information is selectively filled from the targeted velocity-encoding. In the case of 3D PC-FIRM (lower panel), acceleration is achieved by interleaving the Hadamard velocity-encoding steps across spokes. All measurements were performed on a 9.4 T small-bore MRI system (BioSpec 94/30, Bruker BioSpin, Germany) using a flow phantom containing tubes of different diameter to mimic steady velocities. PC-FIRM acquisition parameters were: TR/TE = 12/6 ms, flip angle = 10°, field of view = 58 x 58 mm², spatial resolution = 0.23 x 0.23 mm², slice thickness = 1 mm, Number of Spokes = 220. For dual-VENC PC-FIRM, the low and high VENCs were 25 cm/s and 50 cm/s, respectively. For 3D PC-FIRM a single VENC of 100 cm/s was used. Reference velocity maps were acquired with a flow-sensitive radial FLASH sequence with similar acquisition and velocity-encoding parameters.

Fig. 2 shows representative velocity profiles within the three ROIs (small, medium and large tubes) for the reference and PC-FIRM acquisition. For dual-VENC measurements (top row), PC-FIRM produces velocity maps comparable to the reference, exhibiting distinct laminar profiles. Notably, low-VENC data are phase aliased in both methods. For 3D PC-FIRM (bottom row) the through-plane component vz is shown. Due to the phantom geometry, no measurable velocity was present in the x- and y-direction. A quantitative comparison of mean ROI velocities is summarized in Fig. 3. For dual-VENC PC-FIRM, absolute differences to reference were ≤ 0.5 cm/s at VENC 25 cm/s and ≤ 1.4 cm/s at VENC 50 cm/s across all tubes. For the 3D PC-FIRM (VENC 100 cm/s), the through-plane velocity deviations were −1.70 cm/s, −1.01 cm/s, and −0.33 cm/s in the small, medium, and large tubes, respectively.

These finding demonstrate that PC-FIRM is a fast and robust alternative for dual-VENC and 3D PC-MRI. In contrast to other acceleration strategies, PC-FIRM mixes k-space data with different velocity-encoding parameters across a shared radial k-space to satisfy the Nyquist criterion while accelerating image acquisition. PC‑FIRM reduces acquisition time by approximately fourfold compared to conventional dual‑VENC and 3D protocols used as references, while preserving the characteristic laminar velocity profiles. Nevertheless, modest systematic underestimation of velocities was observed, which we attribute primarily to the mixing of high‑spatial‑frequency information with different velocity-encoding parameters. Laminar profiles contain high‑frequency components that may be attenuated by the mixing strategy. Further acceleration could be achieved by combining PC-FIRM with parallel imaging, which will be investigated future studies.

This feasibility study successfully demonstrates the potential of the PC-FIRM approach. It enables a substantial reduction in acquisition time while preserving relevant velocity information, despite a systematic underestimation of estimated velocities. The dual‑VENC variant additionally leverages high‑VENC data to correct phase-aliasing of low‑VENC measurements in regions with high velocities. Nevertheless, further methodological refinements and in-vivo validation are required.
Maurice RÜGER (Lüdenscheid, Germany) , Schrauder JONAH , Kraatz TOBIAS , Boretius SUSANN , Moussavi AMIR
11:15 - 12:00 #54627 - P205 Bayesian dual-VENC optimization for PC-MRI of mean and turbulent flow.
P205 Bayesian dual-VENC optimization for PC-MRI of mean and turbulent flow.

Phase-contrast magnetic resonance imaging (PC-MRI) can quantify velocity and turbulence-related quantities in disturbed cardiovascular flow. Conventional four-point orthogonal PC-MRI measures three-directional velocity, but stenotic jets remain challenging because the velocity encoding, VENC, must balance dynamic range and turbulence sensitivity. A low VENC improves sensitivity to slow velocities and turbulence-related signal attenuation, but can cause phase wrapping in the high-velocity jet. A high VENC reduces phase wrapping, but decreases sensitivity to velocity fluctuations. Bayesian dual-VENC reconstruction can combine low- and high-VENC acquisitions to improve both velocity and turbulent kinetic energy estimation [1,2]. However, for turbulence quantification, the encoding strategy is also important [3]. seven-point non-orthogonal (ICOSA6) PC-MRI uses six motion-encoding directions and can support full Reynolds stress tensor estimation [4]. It remains unclear whether ICOSA6 provides a practical robustness advantage over four-point orthogonal PC-MRI when both are combined with Bayesian dual-VENC reconstruction. We therefore used the FDA nozzle benchmark to compare both strategies for simultaneous velocity and turbulence quantification.

Steady flow was measured in the FDA nozzle benchmark phantom using four-point orthogonal PC-MRI and seven-point non-orthogonal (ICOSA6) PC-MRI. The four-point sequence used one reference and three Cartesian velocity encodings, while ICOSA6 used one shared reference and six non-orthogonal encodings. For each sequence, data were acquired with 1 and 50 averages using VENC values of 20 and 45 cm s−1. The acquired voxel size was 0.2 × 0.2 × 5 mm³, with TE = 3 ms. Three one-average reconstructions were evaluated: VENC 20 cm s−1, VENC 45 cm s−1, and Bayesian dual-VENC reconstruction using VENC 20 and 45 cm s−1. The 50-average Bayesian dual-VENC reconstruction of the same sequence was used as an internal high-SNR reference because it combined the low- and high-VENC acquisitions and had the highest averaging among the acquired datasets. Quantitative comparison was performed inside the lumen mask using normalized velocity, V*, and normalized turbulent kinetic energy, TKE*. One-average reconstructions were compared with the reference using spatial maps, voxelwise correlation, root mean square error, and Bland-Altman bias.

VENC 20 showed clear phase wrapping in both sequences, confirming that low VENC alone was insufficient for the jet region. For V*, VENC 20 agreed poorly with the reference in ICOSA6 (r = 0.4821, RMSE = 0.3010, bias = -0.0703) and four-point orthogonal PC-MRI (r = 0.5324, RMSE = 0.2753, bias = -0.0613). VENC 45 reduced wrapping and improved V* agreement, but introduced positive bias, especially for four-point orthogonal PC-MRI (ICOSA6: r = 0.9544, RMSE = 0.1268, bias = 0.0768; four-point: r = 0.9214, RMSE = 0.1686, bias = 0.1106). For TKE*, VENC 45 alone was less consistent with the reference (ICOSA6: r = -0.0164, RMSE = 0.0696, bias = 0.0163; four-point: r = 0.1050, RMSE = 0.0835, bias = 0.0216). Bayesian dual-VENC reconstruction gave the strongest agreement with the 50-average reference. For V*, ICOSA6 reached r = 0.9805, RMSE = 0.0788 and bias = 0.0436, compared with r = 0.9686, RMSE = 0.0965 and bias = 0.0450 for four-point orthogonal PC-MRI. The advantage was clearer for TKE*, where ICOSA6 reached r = 0.8180, RMSE = 0.0216 and bias = 0.00584, compared with r = 0.6442, RMSE = 0.0340 and bias = 0.00849.

The wrapped VENC 20 case shows that low-VENC sensitivity alone is not sufficient in stenotic jets. VENC 45 captured the jet more consistently but was less reliable for TKE*, where sensitivity to turbulence-related signal changes is critical. Bayesian dual-VENC reconstruction combined the dynamic range of VENC 45 with the sensitivity of VENC 20, improving both V* and TKE*. ICOSA6 was more robust than four-point orthogonal PC-MRI with respect to the 50-average reference, even with one average. This was supported by higher correlation, lower RMSE and lower Bland Altman bias, particularly for TKE*. The added value of ICOSA6 is also methodological: the six-direction non-orthogonal design can support full Reynolds stress tensor estimation, which is important when mean velocity and turbulence are targeted in the same acquisition. These findings should be interpreted within this FDA nozzle benchmark phantom and the tested VENC range.

In the FDA nozzle benchmark, Bayesian dual-VENC reconstruction using VENC 20 and 45 cm s-1 improved robustness compared with either VENC alone. seven-point non-orthogonal (ICOSA6) PC-MRI showed better agreement with the 50-average reference than four-point orthogonal PC-MRI, with the clearest advantage for TKE*. ICOSA6 Bayesian dual-VENC PC-MRI is therefore a promising strategy when velocity and full Reynolds stress tensor estimation are targeted together in stenotic flow.
Ali AMIRI (Delft, NL, The Netherlands) , Johan T. PADDING , Selene PIROLA , Willian HOGENDOORN
11:15 - 12:00 #53501 - P206 PCASL Input Function (ASL-IF) measurement for directly improving labeling efficiency in vivo.
P206 PCASL Input Function (ASL-IF) measurement for directly improving labeling efficiency in vivo.

Off-resonance effects in pseudo-continuous arterial spin labeling (PCASL) reduce labeling efficiency and can compromise the accuracy of perfusion measurements [1]. Existing correction approaches rely either on indirect estimation from perfusion images or on post-processing of separately acquired B₀ field maps, typically requiring additional scan times on the order of minutes [1–4]. The Arterial Spin Labeled Input Function (ASL-IF) method enables direct measurement of the labeled blood bolus in feeding arteries during the PCASL labeling process itself by acquiring and separating signal from a secondary slice located downstream of the labeling plane (see Fig. 1) [5,6]. This allows immediate assessment of labeling efficiency without perfusion-based feedback, enabling intrinsic calibration within seconds. In this study, we present an initial in vivo comparison between ASL-IF-based off-resonance calibration and corresponding PCASL perfusion images, demonstrating a method for rapid, patient-specific optimization of labeling efficiency.

Sequence: Experiments were performed using a PCASL sequence implemented in gammaSTAR [7], extended by an ASL-IF module. In contrast to the originally described ASL-IF implementation [5], signal separation between the ASL-IF and PCASL slice was achieved without enforcing a fixed phase shift. Instead, variable phase shifts were allowed, enabling the ASL-IF imaging plane to remain fixed during variations of the labeling trains’ phase offset, at the cost of reduced signal-to-noise ratio. Data Acquisition: Measurements were performed on a 3T MRI system (Magnetom Prisma, Siemens Healthineers, Erlangen, Germany) in a healthy volunteer (36 years) after informed consent. For ASL-IF-based off-resonance calibration, a 21s prescan was performed in which the labeling train was divided into blocks with successively increasing RF phase offsets (see Fig. 2). For reference, six conventional PCASL perfusion measurements were acquired with phase offsets ranging from 0° to 360°. In addition, six long ASL-IF acquisitions (10s each) were performed at fixed phase offsets to avoid the influence of arterial arrival time effects. ASL-IF projection images were acquired with RF spacing = 1.54ms, matrix size = 64x1x1, FOV = 40cm, mean z-gradient = 0.53mT/m, slice thickness = 17mm, slice distance = 48mm. Perfusion images were acquired using background-suppressed 3D GRASE with labeling duration and post-labeling delay of 1.8s each [8]. Labeling settings matched the ASL-IF acquisition except for an RF spacing of 1ms. Post-Processing: Perfusion signal dependence on the phase offset was evaluated by voxel-wise averaging of perfusion images. The ASL-IF signal was integrated over time per calibration block and filtered using a temporal average and bandpass filter to reduce the influence of blood pulsation. Arterial arrival delay between the labeling plane and the ASL-IF imaging plane was estimated from signal decay during the post-labeling interval and used to shift the calibration blocks prior signal integration. The off-resonance to the nearest labeling efficiency maximum was estimated using a linear least-squares cosine fit.

The ASL-IF calibration closely matched the corresponding perfusion signal changes across all applied RF phase offsets, as shown in Fig. 3. For a reference RF spacing of 1ms, the off-resonance fit yielded a phase offset of 34° for the perfusion images, 35° for the short ASL-IF calibration and 37° for the long ASL-IF acquisitions.

The ASL-IF-based off-resonance dependence shows strong agreement with the perfusion-weighted images (R²=0.98), demonstrating its ability to directly optimize the labeling efficiency in-vivo. The consistency between the short ASL-IF calibration and the single reference ASL-IF measurements indicates that the applied arrival time correction at the ASL-IF slice is sufficient to reliably characterize the off-resonance dependence. However, very short calibration blocks increase sensitivity to arrival time estimation, which may introduce variability in the estimated off-resonance. Therefore, block durations of at least twice the expected mean arrival delay are recommended. Note that a full 360° phase sampling is not required to estimate the off-resonance, thus enabling significantly shorter calibration scans. While this work focused on averaged inter-arterial off-resonance effects, extension to vessel-specific analysis is feasible (see Figs. 1 and 2) but may be more sensitive to local perturbations and noise.

The proposed ASL-IF-based off-resonance calibration allows subject-specific optimization of the PCASL labeling process within a short calibration scan. Due to its direct integration into the PCASL sequence and simple processing without vessel detection, the method has strong potential for clinical implementation. This approach may improve reproducibility and reliability of PCASL perfusion measurements and pave the way toward more robust perfusion imaging in routine clinical practice.
Luis Andrea HAU (Hamburg, Germany) , Thomas LINDNER , Simon KONSTANDIN , Jens FIEHLER , Matthias GÜNTHER
11:15 - 12:00 #54118 - P207 Application of the Simplified Davis Model to Integrate BOLD, ASL, and Transcranial Doppler Using a Hypercapnic Gas Ramp.
P207 Application of the Simplified Davis Model to Integrate BOLD, ASL, and Transcranial Doppler Using a Hypercapnic Gas Ramp.

Cerebrovascular Reactivity (CVR) reflects the responsiveness of the cerebrovasculature to vasoactive stimuli and is defined by the magnitude and temporal dynamics of cerebral blood flow (CBF) change relative to end-tidal CO₂(PETCO₂). It is emerging as an important biomarker of neurodegenerative disease.[2] This study aims to characterise CVR beyond binary classification of impaired or normal CVR, enabling more personalised and mechanistic assessment. BOLD fMRI is assumed to vary linearly with Cerebral Blood Flow (CBF) for moderate CBF change.[3], however only provides a relative measure of vascular response. The BOLD signal reflects a complex interplay among CBF, blood volume (CBV), oxygen metabolism (CMRO2), and baseline haematocrit, limiting its physiological specificity and preventing direct quantification of perfusion changes. Multi post-label delay pseudo-continuous ASL (multi-PLD pCASL) enables quantitative estimation of CBF and ATT.[4] However, its sensitivity to dynamic changes in ATT, labelling efficiency, and blood limits its suitability during ramp hypercapnia. Transcranial Doppler (TCD) ultrasound measures blood flow velocity in a large artery and provides a non-invasive complement to BOLD and ASL.[5] It provides continuous, high–temporal resolution measurements and is insensitive to transit time variability; how‐ ever, it measures only flow velocity and lacks spatial resolution. A controlled ramp hypercapnic challenge combined with complementary BOLD fMRI, TCD ultrasound, and multi-PLD pCASL leverages the strengths of each modality to provide a more robust assessment of CVR.[6,7]

The Davis model[3,8] can be used to calibrate the BOLD signal using CBF measurements. Eq.1 - where M is the scaling factor, α describes the relationship between CBF and venous CBV and β describes the coupling between CBF and CMRO2. Assuming the gas challenges are isometabolic (negligible CMRO₂ variation[9]), the CMRO₂ term can be omitted. Eq.2 - where γ=α−β describes the relationship between CBF, CBV, and CMRO2. By applying the simplified Davis model to combined BOLD and TCD measurements, with TCD velocity as a proxy for CBF, patient-specific calibration parameters, M and γ, can be estimated to generate whole-brain maps of relative CBF change. These parameters are then incorporated into the same framework using BOLD with resting-state ASL to derive quantitative whole-brain CBF measurements during the ramp protocol. Twenty participants completed two sessions. In the first session, a ramp hypercapnic gas challenge[10] (HV-5%CO₂-10%CO₂;Figure 1) was administered while TCD measured right middle cerebral artery velocity (MCAv). In the second session, the same ramp protocol was performed during BOLD (GE EPI, TR/TE=800/30ms) and normocapnic ASL (pCASL, LD=2.3s, 3 PLDs, 3D GRASE, TR/TE=5.0/29.7ms, FA=120°, 3.9mm iso, LE=0.85) acquisitions on a 3T Siemens Prisma scanner. BOLD data were processed using FEAT[11] and ASL data using OxASL[12]. A right parietal lobe grey matter mask corresponding to the MCA territory was applied, and the median voxel time-series within the masked region was extracted. BOLD and TCD traces were cleaned and temporally aligned to the PETCO₂ trace. The simplified Davis model was applied with systematic variation of M and γ, guided by literature values[8][13-16] to identify subject-specific parameters yielding the highest R²(Figure 2). This procedure was repeated across participants to enable individualised M and γ estimation. ASL data were subsequently incorporated into the simplified Davis model using the fitted parameters to derive a final CBF time-course for each participant(Figure 3).

Out of 20 participants, 11 participants’ data produced physiologically plausible results. Across these participants, the simplified Davis model achieved a mean R² of 0.92±0.08, with fitted M and γ values of 0.08±0.02 and −0.97±0.32, respectively (Figure 2). BOLD responses ranged from a mean minimum of −0.040±0.014 to a mean maximum of 0.039±0.005. CBF responses ranged from a mean minimum of 20.87±3.77 ml/100g/min to a mean maximum of 74.89±27.52 ml/100g/min (Figure 3).

In 9/20 participants, preprocessing captured noise rather than physiological signal, indicating the need for more refined data processing. BOLD responses showed relatively consistent amplitudes across participants, which is expected given that BOLD reflects relative signal change. CBF responses showed greater inter-individual spread, reflecting differences in vascular responsiveness.

These findings demonstrate the feasibility of deriving subject-specific M and γ parameters during a ramp hypercapnic challenge to create fully quantitative time courses. This framework now enables quantitative analysis of the resulting CBF time courses, from which personalised parameters can be extracted to support more refined classification of CVR. However, the derived data requires validation against an independent quantitative gold standard to confirm physiological accuracy.
Indumita PRAKASH (Oxford, United Kingdom) , Lise KLAKSVIK , Lin QIU , Moonsuk KIM , Jingxiu HUANG , Genevieve HAYES , Joana PINTO , Sierra SPARKS , Daniel P BULTE
11:15 - 12:00 #54660 - P208 Assessing cerebrovascular reactivity with blood oxygen level dependent MRI using physics-informed neural networks.
P208 Assessing cerebrovascular reactivity with blood oxygen level dependent MRI using physics-informed neural networks.

Cerebrovascular reactivity (CVR) assesses the capacity of blood vessels to respond to demand, which is impaired in several vascular diseases[1,2]. While several contrasts have been used to assess CVR, blood-oxygen-level-dependent (BOLD) MRI CVR during vasoactive CO2 stimulus is most widely used, often with a block design hypercapnic stimuli alternating between medical air and air with a small proportion of CO2 blocks[1,3]. Conventionally, CVR magnitude and delay are assessed using a General Linear Model (GLM) with a time-shifted end-tidal CO2 (ETCO2) regressor[1,3]. However, GLM-based estimates can be sensitive to low contrast-to-noise conditions[4]. Physics-informed neural networks (PINNs) are one alternative which integrate physical laws, expressed as differential equations, into the learning process, allowing parameter estimation from limited or noisy data while reducing overfitting[5,6]. PINN may improve CVR estimation by embedding BOLD temporal dynamics in the model and have been successfully applied to e.g. arterial spin labelling (ASL)[5,6]. In this project, we investigated whether a PINN-inspired improved CVR estimation relative to GLM using simulated BOLD MRI data at different noise levels.

We used an openly accessible dataset (https://doi.org/10.7488/ds/3492, n=15) to create empirical tissue-specific CVR magnitude and delay distributions[7]. We randomly sampled from the distributions to generate synthetic BOLD MRI images. We simulated the vascular response to a block design ETCO2 paradigm with a 10 mmHg ETCO2 change at two temporal contrast-to-noise ratio levels, tCNR = 0.5 and tCNR = 5.0 using both a general linear model and ordinary differential equation (ODE, Fig.1) [7]. Based on previous work with ASL data[6,8], we used a PINN framework with two coupled SIREN multilayer perceptrons: a tissue network mapping spatial coordinates and time to percentage signal change, and parameter network mapping spatial coordinates to CVR magnitude and delay (Fig.2). We trained the PINN by minimising the hybrid loss combining signal-fitting error with an ordinary differential equation constraint describing first-order BOLD signal dynamics in response to ETCO2[3,6]. Motivated by physics-informed learning approaches[5,6], we also trained a supervised learning (SL) model with physics-based regularisation as an additional comparator. This model took the voxelwise BOLD timeseries as input and predicted CVR magnitude and delay, using ground-truth simulated CVR as supervised targets with a physics-based regularisation term to enforce consistency with a first-order ODE modelling the BOLD signal. For these preliminary results we used 100 simulated datasets (60:40; training:testing), training with a larger number of simulated datasets and further optimisation of delay recovery is ongoing. We compared performance relative to a GLM and physics-regularised supervised model estimations using the Pearson correlation coefficient (PCC), structural similarity index, root mean squared error (RMSE), mean absolute error, bias, and visual inspection.

Visual inspection showed PINN and SL CVR magnitude distribution were similar to the ground-truth and GLM maps(Fig.3) For CVR magnitude estimation, absolute error was lower for the PINN than GLM independent of noise level(Fig.4). At low tCNR, RMSE was lower for PINN than GLM: 0.127±0.002 v 0.214±0.004 %BOLD/mmHg, respectively. At high tCNR, while GLM CVR magnitude values more strongly correlated with the simulated ground truth than the neural-network methods (PCC=0.932±0.001, 0.910±0.002 & 0.908±0.002 %BOLD/mmHg for GLM, PINN and SL), RMSE was lower for both neural-network methods: 0.170±0.000, 0.103±0.001 0.103±0.001 %BOLD/mmHg for GLM, PINN & SL. In cross-evaluation using data simulated using ODE, we found consistent results with lower RMSE for PINN than GLM at tCNR=0.5 & 5.0: e.g. for 0.5, 0.127±0.002 v 0.231±0.005 %BOLD/mmHg. However, PINN delay recovery was less robust e.g. at tCNR=0.5, PINN delay values showed a larger negative bias (-24s) than GLM or SL (-2 & −1s, respectively).

We showed incorporating a first-order physiological constraint into a neural network framework can improve CVR magnitude estimation. The improvement was most apparent under low tCNR conditions, where conventional GLM estimation is most vulnerable to noise. However, PINN CVR delay values were less accurate, likely due to simulation framework, networks or training limitations e.g. CVR magnitude and delay were simulated independently[7]. Future work will increase the number of simulated training datasets and improve delay recovery, by adapting the model framework and testing bivariate distributions to simulate CVR magnitude and delay.

We successfully implemented a PINN model to assess CVR using BOLD-MRI, which offers robust CVR magnitude recovery under noisy conditions. While delay estimation requires further optimisation, our preliminary findings support development of physics-informed CVR quantification methods.
Dayoon JUNG (Edinburgh, United Kingdom) , Emilie SLEIGHT , Joanna M WARDLAW , Michael J THRIPPLETON , Michael S STRINGER
11:15 - 12:00 #53507 - P209 Joint multi-parameter estimation in 3D GRASE PROPELLER perfusion MRI.
P209 Joint multi-parameter estimation in 3D GRASE PROPELLER perfusion MRI.

Variational image reconstruction methods based on the standard Fourier model in MRI inherently suffer from corrupted data because of the lacking model expressiveness. In general, MRI data corruption stems from various noise sources, e.g., off-resonance, motion, chemical shift, relaxation, and their effect in image space is generally dependent on the MRI sequence which is used for data acquisition. There exist well-established methods to estimate each of these phenomena. However, these noise sources are usually correlated, e.g., motion affects the off-resonance field. Hence, extensions of the standard Fourier model have been proposed [1, 2] which allow a joint estimation of a subset of these noise sources to improve reconstruction quality. In this work, we extend these methods to simultaneously model off-resonance, motion, fat-water chemical shift and T2 relaxation for a fat-suppressed 3D GRASE PROPELLER [3, 4] acquisition. We verified our proposed reconstruction model in a pCASL perfusion MRI experiment, a technique where blood is used as an endogenous tracer.

The basis of our model is a non-uniform discrete Fourier transform of type 3, which allows us to encode non-cartesian spatial and frequential sampling points. Rigid motion is encoded by means of a 6 DoF sub model that rotates and translates the spatial sampling points. Off-resonance and the fat-water chemical shift are encoded via translational shift sub models on the spatial sampling points in phase- and frequency-encoding direction, where the frequency-encoding component is weighed to account for higher bandwidth. The T2 relaxation map is encoded in an exponential that weighs each image voxel depending on the refocusing time of the current partition in k-space since in 3D GRASE PROPELLER acquisition, T2 decay mainly occurs along the refocused partition direction. The complete signal model is given by Equation 1. We solve the corresponding least-squares problem iteratively, i.e., we treat all sub model parameters as well as fat-water separated images as learnable parameters and aim to find a set of parameters which minimize the squared Euclidean distance between S and the actual measurement data. Note that to ensure label and control images are aligned we represent the label image as the sum of perfusion image and control image and estimate the perfusion image directly, i.e., control image information is also contained in the label image forcing the optimization to align them. Experiments were performed on a 3T Siemens VidaFit system (Siemens AG, Erlangen, Germany) with a TR of 4.5 s, a TE of 23.26 ms and a brick size of 96 x 32 x 8 with an FOV of 300 mm x 300 mm x 32 mm. A total of 32 bricks were acquired in a golden-angle sampling scheme. The image matrix size is 96 x 96 x 8. The subject gave written consent prior to examination and rotated their head between acquisitions following a movement protocol. We compare our modeled images with standard Fourier inversion reference reconstructions.

Figure 1 shows reference images and modeled fat-water separated images with a modeled chemical shift of 457 Hz. Figure 2 depicts the modeled off-resonance field and T2 map. Figure 3 plots the estimated motion parameters. Figure 4 shows a reference perfusion image and a modeled water perfusion image.

Our work verifies the feasibility of joint estimation of off-resonance field, T2 map, motion parameters and fat-water chemical shift in 3D GRASE PROPELLER ASL perfusion MRI. Even in a fat-suppressed sequence, our model was able to extract residual fat image content (see Figure 1). However, the model underestimated fat content leaving fat artifacts in water images. Our off-resonance sub model exploits multiple rotations of phase- and frequency-encoding direction which induces a stronger prior on the model compared to a single rotation in [1] or modeling only shifts in phase-encoding direction [2] and leads to a robust estimation of off-resonance (see Figure 2). Our T2 relaxation sub model allows us to estimate T2 maps without relying on multi-TE acquisitions (see Figure 2). Furthermore, we observed a stable estimation of high T2 values without the need for regularization. Our estimated motion parameters (see Figure 3) align with the motion protocol and remove motion artifacts from the reconstructions (see Figure 1). However, although our model improves on the reference perfusion image reconstruction it still suffers from residual noise. In the future, we want to improve the overall performance of the model by introducing sophisticated regularization methods. Furthermore, we aim to extend the model further to compensate for EPI Nyquist ghosting.

In summary, our proposed model can jointly estimate off-resonance, T2 relaxation, rotational and translational motion and fat-water chemical shift in 3D GRASE PROPELLER perfusion MRI. It improves overall image reconstruction quality and allows for multi-parameter estimation without specialized sequence adaption.
Tom LÜTJEN (Bremen, Germany) , Jörn HUBER , Matthias GÜNTHER , Daniel HOINKISS
11:15 - 12:00 #54530 - P210 IVIM Tensor MRI: Novel Biomarkers for In Vivo Microvascular Characterization — A Feasibility Study.
P210 IVIM Tensor MRI: Novel Biomarkers for In Vivo Microvascular Characterization — A Feasibility Study.

Diffusion-Weighted Magnetic Resonance Imaging (DWI-MRI) [1] measures water diffusion and reflects interactions with tissue microstructure. Diffusion Tensor Imaging (DTI) extends DWI by acquiring multiple diffusion directions, enabling characterization of diffusion anisotropy and orientation [1]. IntraVoxel Incoherent Motion (IVIM) MRI [2] further incorporates microvascular blood-flow–related motion and estimates diffusion coefficient D, perfusion fraction f, and pseudo-diffusion coefficient D*. Most IVIM studies assume isotropic perfusion and ignore vascular directionality. Similar to DTI, diffusion gradients in multiple directions can also be applied in IVIM to evaluate anisotropy of f and D* [3], but this has not yet been systematically studied. This work presents quantitative in vivo perfusion biomarkers characterizing microvascular architecture and orientation. Such information can be relevant for tumor staging and treatment monitoring [4], and early detection of neurological disorders. This study aimed to evaluate the feasibility of IVIM tensor MRI for quantifying microcapillary network heterogeneity using synthetic, phantom, and in vivo data.

Synthetic data were generated from high-resolution 3D fluorescence microscopy datasets of murine tissues [5]. Microcapillaries were segmented, skeletonized, and characterized by diameter, volume, and length [6]. Blood flow was modeled using the Hagen–Poiseuille equation and Kirchhoff’s laws [6,7]. Particle tracking and signal generation: Particle motion (Fig.1 left) was simulated along vascular skeletons with a time step Δt up to a total time T. The initial particle distribution was proportional to capillary volume. At each step, particles moved a distance (d) according to the vessel's blood velocity (v), with bifurcations resolved probabilistically based on blood flows [7]. In addition, an extravascular diffusion component with either isotropic or anisotropic Brownian motion was simulated. Synthetic MR signals were generated by summing signals from all particles, accounting for their phase accumulation under diffusion gradients [7]. Ideal conditions with no noise were assumed. Real data acquisition: A 9.4T scanner (Bruker) was used to acquire real data on a dialysis filter phantom with aligned fibers and controlled water perfusion [8] and on a healthy rat. A patient with glioblastoma was scanned with a 3T scanner (Philips). Processing: MR signals of each voxel were fitted with an IVIM tensor model, extending the classical IVIM formulation [2] (Eq.1). D, D* and f represent diffusion, pseudo-diffusion and perfusion fraction tensors, respectively. Si,j denotes the signal for gradient direction gi and b-value bj; S0 is the non-diffusion-weighted signal. First, the standard IVIM equation [8] was fitted separately for each gradient direction. Then, the tensor, mean, and fractional anisotropy (FA) were calculated for D, f, and D*, similar to the standard DTI analysis [9].

Simulated data: Simulated MR signals differed between perfusion-only, diffusion-only, and combined perfusion–diffusion conditions (Fig.1 right). Fig.2 shows the estimated perfusion and diffusion tensor ellipsoids. In anisotropic diffusion simulations, the perfusion tensor remained unchanged, while the diffusion tensor reflected the imposed diffusion direction (data not shown). Fig.3 shows the correlation between reference values and IVIM-derived estimates for FA and f, together with the angular deviation between the IVIM-estimated and reference principal perfusion directions as a function of reference FA. Real data: Fig.4 shows perfusion and diffusion maps obtained from phantom and in vivo data, including tensor-derived mean, FA, and directionality maps for both diffusion and perfusion components.

The simulations demonstrated that directional information is more pronounced in the perfusion tensor f than in D* (Fig.2). In muscle tissue, the estimated perfusion tensor orientation matched the dominant microcapillary alignment, while the diffusion tensor remained isotropic due to the simulated extravascular diffusion. Furthermore, the strong correlation between ground-truth and estimated parameters indicates high estimation accuracy (Fig.3). Phantom experiments further validated the method: M(D) was consistent with isotropic free-water diffusion, diffusion anisotropy was negligible due to the wide tube lumina relative to diffusion times, whereas M(f) reflected the fraction of water volume inside the tubes and perfusion anisotropy clearly captured the unidirectional microtube architecture (Fig.4). In vivo measurements show the feasibility of estimating physiologically meaningful perfusion and diffusion maps.

The proposed IVIM tensor MRI method enables estimation of microvascular architecture and its directional organization in synthetic, phantom, and in vivo datasets. These results suggest applications in tumor characterization, treatment monitoring, and early neurological diagnosis. Supported by AZV ČR (NW26-08-00211).
Barbora ŘÍHOVÁ (Brno, Czech Republic) , Jiří KRATOCHVÍLA , Aneta MALÁ , Radovan JIŘÍK , Marek DOSTÁL
11:15 - 12:00 #54286 - P211 Evaluation of IVIM parameter recoverability using limited four-b-value diffusion MRI in esophageal cancer.
P211 Evaluation of IVIM parameter recoverability using limited four-b-value diffusion MRI in esophageal cancer.

Intravoxel incoherent motion (IVIM) MRI estimates tissue diffusion and perfusion from diffusion-weighted imaging without contrast injection [1], with important applications in cancer. However, IVIM fitting remains highly sensitive to acquisition design, SNR, and fitting strategy, especially in clinical DWI datasets acquired before recent IVIM standardization recommendations [2] with limited b-values [3]. This study evaluated the feasibility and robustness of IVIM fitting methods applied to the STIRMCO cohort, a MR study of esophageal tumor using four-b-value DWI protocol [4], [5].

Synthetic IVIM signals were generated using a cylindrical tumor model with same b-values (50, 150, 400, 800 s/mm²) as STIRMCO protocol [5] (Figure 1). A total of 144 physiologically relevant ground-truth parameter combinations {perfusion fraction f, pseudo-diffusion coefficient D*, diffusion coefficient D} were simulated with fixed S0 = 1000. Synthetic noiseless images were first generated such that voxels within a tumor ROI (n=197) followed the IVIM signal model while background voxels were initialized to zero. Rician noise was iteratively added to achieve target SNR levels of 10, 30, and 50, with 50 independent noise realizations per configuration. Five fitting strategies were compared, including voxel-wise and ROI-averaged direct and multi-step fitting approaches. Direct fit resolves the four unknowns (f, D*, D, S0) using the bi-exponential fitting on all b-values. The 2-step fit used prior estimation of D from high b-values (400 and 800 s/mm²). In the 3-step fitting strategy, D was first estimated from the high b-value mono-exponential approximation, while f was subsequently derived analytically from the extrapolated tissue signal. These multi-step methods thereby reduced the number of free parameters in the final bi-exponential optimization. Averaging the signal within ROI prior to fit resulted in a SNR boost of 14 but loss of spatial information. Non-linear least-squares optimization with physiological parameter bounds (Figure 1) was performed using SciPy-based fitting routines. The two best-performing strategies were subsequently applied to STIRMCO cohort to evaluate fitting feasibility and parameter plausibility.

Tissue diffusion coefficient D was consistently the most robustly estimated IVIM parameter across all fitting methods and SNR levels, whereas pseudo-diffusion coefficient D* showed substantial error and frequent physiologically implausible estimates (Figure 2). ROI-averaged 2-step fitting yielded the lowest overall parameter estimation errors with respective errors on f (0.07± 0.24) and D (-0.07± 0.14 µm²/ms), but removed information on tumor spatial heterogeneity. In contrast, voxel-wise 3-step fitting provided good compromise between parameter robustness and preservation of spatial information, with low mean fitting errors for f (0.03 ± 0.20) and D (0 ± 0.73 µm²/ms) across all simulated conditions. Voxel-wise direct fitting showed the poorest robustness. Increasing SNR improved estimation accuracy primarily for D and f, while limited improvement was observed for D*. Application of these two preferred fitting strategies to STIRMCO cohort showed that D remained within physiologically plausible ranges reported for esophageal cancer [6], [7], whereas broader distributions and occasional elevated values were observed for f and D*. For ROI-averaged 2-step fitting, some D* estimates approached the imposed upper fitting bounds. For voxel-wise 3-step fitting, occasional voxels reached the lower bounds for f and D, while D* frequently remained close to its initial guess. However, both methods robustness was not explicitly characterized in that range of perfusion fraction. Experimental signal decay is shown on Figure 4 with a visible perfusion effect that is reasonably well captured by the voxel-wise 3-step fit, but with quite some discrepancy for intermediate (b~400) b-values.

The present study demonstrates that IVIM parameter recoverability depends moderately on fitting strategy when only a limited number of b-values are available. Voxel-wise 3-step-fitting allows a satisfying parameter estimation, except for D* which remains poorly identifiable under the investigated acquisition conditions, as confirmed by the fits applied to the clinical cohort where the estimated perfusion fraction was also rather high.

Under a four-b-value DWI protocol in esophageal cancer, not originally optimized for IVIM imaging, tissue diffusion remained reasonably recoverable, whereas D* was not, and the perfusion fraction should be interpreted with caution. Among the evaluated strategies, , voxel-wise 3-step-fit provided the best compromise between fitting robustness and preservation of tumor spatial heterogeneity, making it the most suitable approach for subsequent clinical IVIM analysis in this acquisition setting. Prospective studies should adopt richer acquisition protocols for IVIM estimation, as per recent guidelines [3].
Victoria JOPPIN (Lausanne, Switzerland) , Laura HAEFLIGER , Clarisse DROMAIN , Ileana JELESCU
11:15 - 12:00 #54276 - P212 Feasibility of Multi-Compartment IVIM Imaging for Interstitial Fluid and Microvascular Assessment at the 7T Connectome.
P212 Feasibility of Multi-Compartment IVIM Imaging for Interstitial Fluid and Microvascular Assessment at the 7T Connectome.

The glymphatic system is a proposed mechanism by which cerebrospinal fluid (CSF) and interstitial fluid (ISF) exchange along perivascular spaces to clear cerebral waste. Glym-phatic dysfunction has been implicated to contribute to neurodegeneration and cerebral small vessel disease [1,2]. Conventional bi-exponential intravoxel incoherent motion (IVIM) imaging [3] separates microvascular (pseudo)perfusion from parenchymal diffu-sion. Recently, a three-compartment IVIM (3C-IVIM) has been proposed to model an ad-ditional intermediate compartment, thought to reflect the ISF, with previous studies showing correlation of the intermediate compartment with enlarged PVS and white mat-ter hyperintensity burden [1,4,5]. Standard non-negative least squares fitting is sensitive to noise in 3C-IVIM, while a physics-informed neural network (PINN) has been proposed to improve fitting robustness [1]. Here, we explore the feasibility of 3C-IVIM imaging on the 7T Connectome (Gmax=200mT/m; Smax=900T/m/s). The increased gradient performance enables shorter diffusion encoding times that better preserve the SNR gains of 7T, while faster sampling helps mitigate T2/T2*-related signal loss at ultra-high field. Motivated by prior studies using IR preparation to suppress CSF signal [2,5,6], we compare IR- and non-IR-prepared acquisitions in a single volunteer to assess whether CSF suppression affects not only the intermediate compartment but also tissue and microvascular estimates, followed by an initial inter-volunteer comparison using a time-efficient non-IR protocol.

Three healthy volunteers (S1–S3) were scanned after written consent on a Siemens Ter-ra.X Impulse Edition (7T Connectome). Subject S1 underwent three protocols with 1.0 mm iso resolution: IR-prepared (TI = 2.2s, TR/TE = 17.5 s/62 ms), non-IR (TR/TE = 17.5 s/62 ms), and fast non-IR (TR/TE = 5.8 s/51 ms). Subjects S2 and S3 were scanned using the fast non-IR protocol at 1.5 mm iso (TR/TE = 4.0-4.5 s/50 ms). All sessions acquired 16 b-values (0, 10, 20, 40, 60, 90, 120, 200, 300, 400, 500, 600, 700, 800, 1000, 1200 s/mm²) in three orthogonal directions. This allows for fitting the microvascular (mv), intermediate (int) ISF, and parenchymal (par) compartments [2,6] and quantify the volume fraction (f) and diffusivity (D) per compartment (see Eq. 1). Preprocessing included motion, eddy-current and susceptibility-distortion correction, registration to the respective volunteer reference space, and motion-correction-related b-matrix reorientation in DIFFPREP/TORTOISE [7]. PINN fits were compared to conventional NNLS spectral fitting. ROI analyses were per-formed in basal ganglia, putamen, hippocampus, and white matter (WM) using FastSurfer [8] masks.

IR-preparation consistently yielded lower means and smaller standard deviations for f_int and D_mv across all ROIs compared to both non-IR protocols (Fig. 1). For example, PINN-derived basal ganglia and hippocampal f_int decreased from 0.260 ± 0.192 and 0.300 ± 0.239 without IR to 0.189 ± 0.125 and 0.173 ± 0.132 with IR-preparation, respec-tively. Likewise, basal ganglia D_mv decreased from 9.927 ± 6.793 × 10⁻² to 7.537 ± 5.066 × 10⁻² mm²/s, consistent with prior 3C-IVIM studies at lower field strengths [1,2]. Without IR, shortening scan time by reducing TR and TE, did not substantially alter parameter es-timates (Fig. 1). Across all scans, PINN produced anatomically coherent and spatially stable maps com-pared with NNLS, which showed considerably higher noise and therefore variability in the voxel-wise-performed parameter fits (Fig. 2). The signal decays were well described by the PINN model across ROIs and acquisitions, with low residual errors (Fig. 3; RMSE: 0.01–0.03). In deep gray matter ROIs, non-IR data showed consistent over- or underestimation of diffusivity parameters, likely due to constrained diffusivity ranges used in the fit. Inter-subject analysis (S2 and S3, Fig. 4) for non-IR protocols demonstrated consistency of PINN fits for D_int (basal ganglia: 2.173±0.435 vs. 2.180±0.430 ×10⁻³ mm²/s), and f_mv (basal ganglia: 0.013±0.007 vs. 0.013±0.008), with f_int highest in the hippocampus for both volunteers (0.340±0.149 and 0.335±0.152).

IR-based CSF suppression reduced mean f_int and variability, however, resulting in de-creased D_mv and increased SAR, requiring longer acquisitions. Without IR, reducing TR and TE for a time-efficient protocol did not considerably change the fitted parameters in S1. PINN fitting produced more stable maps than NNLS, although the diffusivity bounds require further evaluation. Inter-volunteer results were comparable and agreed with lit-erature. Future extensions with larger cohorts will facilitate a formal statistical assess-ment.

Three-compartment IVIM imaging with PINN-based fitting is feasible on the high-performance 7T system with spatial resolution of up to 1 mm. Our results indicate stable compartment decomposition using time-efficient non-IR acquisitions.
Muhammad Tahir QURESHI , Daniel UHER , Oliver SPECK , Hendrik MATTERN (Magdeburg, Germany)
11:15 - 12:00 #54689 - P213 A hardware-efficient multichannel pulsed-NMR magnetometer for B0 mapping in ultra-low-field MRI.
P213 A hardware-efficient multichannel pulsed-NMR magnetometer for B0 mapping in ultra-low-field MRI.

Static magnetic field (B0) mapping is an essential step in MRI magnet characterization and shimming. For low- and ultra-low-field permanent-magnet systems, accessible mapping tools are of high interest, especially in the context of cost-effective portable solutions [1]. Pulsed NMR magnetometers with digital processing [2] and self-tuning wideband NMR magnetometers [3] have been reported, although these systems operate at substantially higher fields than considered in this work. NMR probes and field cameras are widely used for magnetic field monitoring in MRI [4,5]. For B0 mapping, commercial field cameras feature multiprobe spherical geometries [6]. Reported ultra-low field multiprobe magnetometer solutions rely on either NMR probes connected to transceiver via separate coaxial cables [7], or a switched multiprobe architecture [8] which, however, require complex switching circuitry including manual control. To address these limitations, we propose a hardware-efficient ultra-low field (~69 mT) multichannel pulsed-NMR magnetometer with fifteen probes that share a single coaxial RF cable via an elegant switching architecture. (Fig. 1a).

Fifteen 1H NMR probes were arranged along a 10-cm-radius circular arc. Manual rotation of the array about its central axis allowed B0 measurements on a 20-cm-diameter spherical surface. Each probe contained a distilled water sample and was tuned near 2.95 MHz, corresponding to a B0 value of approximately 69 mT. N-MOSFET switches controlled by shift registers select one active probe at a time, while inactive probes are isolated from the shared RF line (Fig. 1a). Before each measurement, the control unit selects an active probe, then a 90° RF pulse excites the sample, and an FID signal is acquired from the selected probe (Fig. 1b). The B0 value is calculated from the spectral peak of the processed FID. Spherical B0 mapping is performed at 24 angular positions with a 15° step. For each probe and angular position, three measurements are performed, and the resulting B0 values are averaged. After the full angular scan, the initial angular position is measured once again. Using the described algorithm and the developed solution (Fig. 1с), B0 mapping of the 69-mT magnet was performed, Slow B0 drift was estimated separately for each probe from the initial and final reference measurements, and the data were corrected to the middle of the series assuming linear drift.

The shared RF line switching design facilitates sequential FID acquisition through a single connection to the transceiver. For the three repeated measurements at each probe position, the relative B0 spread did not exceed 9.6 ppm across all probes and angular positions, with a mean spread of 3.2 ppm. The in-plane rotation experiment (Fig. 2) enabled a consistency check: different probes placed at nominally identical positions showed a maximum B0 differences of 50 ppm, caused by manual positioning inaccuracy and slow B0 drift. During spherical mapping, the estimated drift was approximately 20 ppm across all probes, with minor probe-to-probe variations. This drift was considered to construct the detailed B0 map on a 20-cm-diameter spherical surface with a 15° step (Fig. 3). The complete mapping procedure required approximately 50 min. The measured peak-to-peak B0 inhomogeneity across the spherical surface was 452 ppm.

The results demonstrate the feasibility of the proposed switched multichannel pulsed-NMR probe array for static B0 mapping in ultra-low-field MRI. Fifteen magnetometer probes share a single coaxial RF cable to the transceiver, while a switching circuit selects the target probe before each 90° excitation. This eliminates the need for separate coaxial connections for individual probes and enables operation with an existing RF chain of the ultra-low-field MRI. The developed system allows B0 magnetometry on a spherical surface with a reproducibility for a single probe better than 10 ppm.

A hardware-efficient multichannel pulsed-NMR magnetometer was implemented for B0 mapping at approximately 69 mT. The system combines a single shared RF line, sequence-synchronized probe switching, repeated measurements, and per-probe estimation of magnetic field drift to produce a spherical B0 map of an ultra-low-field permanent MRI magnet. Acknowledgements This work was supported by state assignment No. FSER-2025-0018 within the framework of the national project “Science and Universities”.
Anna DIATLOVICH (Saint-Petersburg, Russia) , Vasily SEVERIKOV , Vyacheslav VINOKUROV , Aleksei NASONOV , Mikhail MURZIN , Andrei BELOV , Aleksandr FEDOTOV , Anna HURSHKAINEN
11:15 - 12:00 #54642 - P214 An open-source dynamic-range-optimization module for low-field MRI.
P214 An open-source dynamic-range-optimization module for low-field MRI.

In low-field magnetic resonance imaging (MRI), efficient use of the receiver dynamic range is essential to preserve weak MR signals while minimizing the impact of digitization noise. Specifically, when digitization errors approach or exceed thermal noise levels, the resulting data leads to degraded image resolution and signal-to-noise ratio (SNR) [1]. In our scanners, the acquisition chain is controlled by MaRCoS [2], which includes a 16-bit analog-to-digital converter (ADC) with an input amplitude range of up to ±250 mV. During imaging, the experimental noise floor is approximately 144 nV rms at 50 kHz bandwidth at the coil output, which corresponds to 27 uV after a low-noise amplifier (LNA) with 45 dB gain. Depending on sample, coil, and electronics, there can be significant underutilization of the available ADC range, potentially limiting the effective sensitivity of the receiver chain. To address this limitation, we have developed a gain-conditioning device (SDRO, from Single channel Dynamic Range Optimization) built upon a second amplification stage and a variable attenuator. We have also integrated the required software control into MaRGE [3] enabling dynamic adjustment of the variable total gain directly from the scanner interface.

A general sketch of the setup can be seen in Figure 1. The SDRO architecture consists of a 0-31 dB programmable digital attenuator (ZX76-31A-PPS+) cascaded with a fixed-gain low-noise amplifier (ZFL-1000N+, Mini-Circuits; 26 dB gain). This configuration provides a total gain range going from -5 dB to +26 dB, with the attenuation level controlled by an Arduino UNO, which receives commands through a serial port. Experiments were performed on a 72 mT Physio 1 MRI scanner [4]. The signal received from the MRI coil was pre-amplified by a 45 dB LNA (Barthel HF) before entering the SDRO module. Baseline measurements were conducted without SDRO to characterize the conventional receiver chain, including noise, single spin-echo, and image acquisition with RARE (Rapid Acquisition with Relaxation Enhancement) sequences. Imaging parameters were TR/TE = 200/10 ms, echo train length = 5, acquisition time = 4.0 ms, field of view = 15 × 15 × 15 cm³, matrix size = 200 × 200 × 10, and a single signal average. A standard structured phantom was used for all experiments. Once the SDRO device was connected to the receiver chain, we swept the overall gain of the module from -5 to 26 dB, recording RMS noise voltages and spin-echo amplitudes. Additionally, we acquired images at -4 dB, -0 dB, +10 dB, and +26 dB, using a RARE sequence with the same parameters used in baseline characterization. The SNR in a region of interest (ROI) at the phantom center was calculated as the ratio between the mean signal intensity and the standard deviation of four background ROIs.

Figure 2(A) shows the echo amplitude and RMS of the measured noise data at different gain values. Figure 2(B) shows the ratio between them, i.e. the echo SNR. Figure 3 compares reconstructed phantom images acquired under baseline and selected SDRO gain conditions representing the saturation, optimal, equivalent to no net gain, and underutilization regimes. Figure 4 presents a comparative summary of SNR and maximum voltage at the center of k-space across four selected gain levels and the baseline image.

Without adequate pre-digitization scaling, the MR signal may occupy a limited fraction of the ADC input range, increasing the relative contribution of quantization error. On the other side, excessive gain can drive the receiver chain toward saturation, where larger signal amplitudes no longer translate into improved image quality. The gain sweep (Figure 2) revealed this trade-off, with an efficient operating region (+4 to +14 dB) in which digitization error becomes negligible while clipping is still avoided. The best image-domain performance was obtained at +10 dB where the SNR increased from 22.0 in the standard fixed-gain acquisition to 24.4, corresponding to an improvement of 11 %. At +26 dB, the voltage measured at the center of k-space (255 mV) indicates digitizer saturation. For -4 dB, lower SNR indicates relevant digitization errors. Since the induced voltage is sequence- and subject-dependent, gain conditioning is preferable to a fixed receiver configuration across all acquisitions.

The SDRO framework demonstrated that receiver gain conditioning can improve signal digitization efficiency and image quality in low-field MRI through gain-controlled optimization of the analog front-end.
Mary NASSEJJE A. (VALENCIA, Spain) , Luiz Guilherme DE CASTRO SANTOS , Rubén BOSCH , Fernando GALVE , José ALGARÍN , Joseba ALONSO
11:15 - 12:00 #54656 - P215 GPU-accelerated streamfunction design search for low-field MRI surface coils.
P215 GPU-accelerated streamfunction design search for low-field MRI surface coils.

Low-field MRI and magnetic particle imaging rely on custom surface coils whose design is less a single inverse solve than a search for a connected coil that performs after contouring, routing, and hardware scoring. Tools like bfieldtools [1,2] and pyCoilGen [3] handle modeling and wire layout, but high-performance designs need fast search to approach optima in a high-dimensional, nonlinear design space. We present a GPU-resident workflow validated in two regimes. First, a static-field coil generating a 0.05 T field transverse to the cylinder bore axis serves as a single-metric ppm-scale benchmark. Second, the same engine drives a three-axis gradient insert on the OSI2/A4IM geometry [4], the leading open-source magic-angle rotated gradient design for the OSI2 low-field MRI platform. This regime tests multi-metric optimization, balancing field quality against amplifier voltage and inductance.

Our workflow uses the streamfunction formulation for inverse MRI coil design [5,6]. A triangulated surface carries a scalar streamfunction whose tangential variation defines the surface current [7]. The new contribution is the GPU-resident search implementation: the dense field coupling matrix is never assembled, and the forward Biot Savart operation and its adjoint are applied as matrix free operators in memory bounded chunks, with all sparse regularization and intermediate state resident on the GPU throughout the solve. Figure 1 introduces two further accelerations for target-symmetric problems. Symmetry projection solves the unknown streamfunction on a single canonical surface tile and expands it to the full design surface by parity operations. Target point folding maps symmetry equivalent target samples back into the canonical region during optimization, reducing per candidate work. After optimization, the streamfunction is contoured, connected into one wire geometries where required, and rescored. All methods are scored by the same solver agnostic validator: exact finite segment Biot Savart on each method’s output geometry, scored as peak to peak ppm on an equal area ROI boundary cloud. Comparison runs use default pyCoilGen [3] and bfieldtools [1,2] settings. All experiments ran on a Ryzen 9 9950X3D and an RTX 5090. The gradient benchmark optimizes connected three-channel coil sets on the locked A4IM geometry, scored on the metrics defined in Table 1.

Figure 1 reports the static-field benchmark, where symmetry projection and target-point folding together deliver a 3.1× reduction in validated ppm at lower candidate cost. In an eight-candidate regularization parameter search, our baseline reached 224.49 ppm in 11.87 s, symmetry projection improved this to 106.66 ppm in 6.98 s, and target-point folding reached 71.89 ppm in 7.20 s. In the design-resolution benchmark (Figure 2), ours started at 350.8 ppm at the first checkpoint (46.8 s), reached below 50 ppm after 116 s, and 14.2 ppm after 186 s. On the same task and validator, bfieldtools and pyCoilGen required about 33 min and 70 min respectively to reach sub-100 ppm, a 17× and 36× wall-clock penalty. Figure 3 and Table 1 report the gradient insert. Our connected one-wire designs cut worst-channel normalized inductance by 18% and mean L/η by 25%, with the largest single-channel gain on Ch3 along B0 (−48%). Worst-channel inductive voltage at 50 T/m/s drops correspondingly from 32.9 V to 27.1 V, and worst-channel nonlinearity improves from 16.99% to 13.68%. The trade-offs are lower diagonal-channel efficiency (∼1.4× higher peak current on Ch1/Ch2) and a small Ch3 nonlinearity increase (to 4.97%, within the 5% usability envelope).

Reaching low ppm requires raising mesh resolution and target sampling density together, at a per-candidate cost that grows quickly in conventional pipelines. Our results demonstrate that the workflow can evaluate enough high-resolution candidates to either push a single field metric toward extreme low-ppm error or optimize several hardware constraints simultaneously. At matched field-quality targets, the same engine matches or improves on coils produced by pyCoilGen and bfieldtools at more than an order of magnitude lower wall-clock cost. For the gradient redesign, the worst-channel slew-voltage and inductance gains are the binding constraints for slew-limited head-insert imaging (EPI readouts and fast spin-echo) [8]; the Ch1/Ch2 peak-current and Ch3 nonlinearity trade-offs sit within standard amplifier and ROI envelopes. An experimental characterization of the OSI2/A4IM gradient designs is planned for the conference session.

We demonstrated GPU-accelerated streamfunction search as a robust design engine for hardware-constrained low-field MRI surface coils, from target field to connected wire. Symmetry projection and target-point folding cut validated ppm by 3.1× at lower candidate cost, and the same engine improved the OSI2/A4IM gradient reference on worst-channel inductance and slew voltage for slew-limited head-insert imaging.
Marian FREI (Aachen, Germany) , Felix DAHMS , Kostiantyn LAVRONENKO , Marcel OCHSENDORF , Emilia YIN-GROSSMANN , Yannick KUHL , Volkmar SCHULZ
11:15 - 12:00 #54533 - P216 Comparison of gradient impulse response function and temporal neural-network-based methods for gradient characterization at ultra-low field.
P216 Comparison of gradient impulse response function and temporal neural-network-based methods for gradient characterization at ultra-low field.

Low‑field portable MRI systems have recently been developed to explore their feasibility for clinical deployment in environments where their reduced cost and required infrastructure make them attractive. One aspect of this vision requires the development of scanners that can generate clinically meaningful images while maintaining minimal power consumption for power-hungry sequences such as diffusion. Current portable low‑field MRI systems produce gradient waveforms that may deviate significantly from the intended input. Linear time‑invariant models, such as the Gradient Impulse Response Function (GIRF)[1], provide useful first‑order approximations but fail to fully capture nonlinear distortions in the gradient response. A similar limitation has been observed in ultra‑high‑field MRI scanners, where temporal convolutional network–based (TCN) methods have successfully modeled these nonlinear behaviors[2]. To improve the reliability, image fidelity, and signal-to-noise ratio (SNR) of low‑field MRI scanners designed for deployment in challenging environments, we explore the performance of the linear-time-invariant GIRF method and the non-linear-time-invariant TCN method to characterize the gradient system.

A dataset of triangular and chirp waveforms was acquired using the thin-slice method[3] on a portable MRI system[4] operating at a B₀ field strength of 47 mT, with wire-wound gradient coils powered by AE Techron 7224 amplifiers. Gradient amplifier current was monitored throughout all acquisitions. The measured gradient waveforms and monitored current were split into training (80%, including chirps) and testing (20%, triangles only) datasets and used to calculate the gradient system transfer function via the GIRF method. The gradient waveforms were then used to train the TCN proposed by Martin et al.. Two hyperparameter sets were evaluated: (1) parameters from the literature (TCN-Lit) and (2) parameters optimized for maximum performance (TCN-Opt). Mean normalized root mean square error (NRMSE) between predicted and measured waveforms was computed and compared across three models: GIRF, TCN-Lit, and TCN-Opt. Paired NRMSE values were analyzed using the Wilcoxon signed-rank test (p < 0.05). Results were visualized with violin plots and interpreted alongside waveform comparisons to highlight differences in model performance.

Triangle waveforms were generated with varying amplitudes and slew rates. A single chirp waveform (-3 kHz to +3 kHz) was acquired with both polarities. Three and ten averages were acquired for the triangle and chirp waveforms, respectively. In total, 82 waveforms (Figure 1) were collected along the y-axis. The dataset was filtered using a Butterworth filter, randomly shuffled, and split into 66 training and 16 testing waveforms. During acquisition, the output of the gradient amplifiers was also recorded via a current-monitor port. The GIRF method was applied to the training data to estimate transfer functions based on both the measured gradient waveforms and the monitored current. The resulting transfer functions are shown in Figure 2. The TCN was first trained using the hyperparameters reported in the original ultra-high-field study and subsequently optimized for this application using Optuna[5]. Due to hardware limitations, training was performed for 70 epochs instead of 150. Predicted test waveforms from both TCN configurations and the GIRF method, along with their deviations from the nominal and measured waveforms, are presented in Figure 3. The corresponding NRMSE values and Wilcoxon signed-rank test results are shown in Figure 4.

The monitored output from the gradient amplifier exhibited a near-flat transfer function, indicating a limited contribution to waveform distortion. This contrasts with prior reports identifying gradient amplifiers as a major source of distortion. The transfer function derived from the measured NMR signal showed substantial variation, suggesting that it is the dominant contributor to gradient deformation in this system. Given the Halbach array design, significant eddy current effects from the magnet are not expected; instead, the observed distortions may arise from the RF shield. The GIRF approach achieved strong performance (NRMSE = 0.1414). TCN-Lit showed no significant improvement (NRMSE = 0.1371), while TCN-Opt yielded only a modest but significant gain (NRMSE = 0.1288).

These results indicate that our gradient system behaves predominantly as a linear time-invariant system that is well modeled by the GIRF approach, with a smaller nonlinear component partially captured by the TCN. Despite limited computational resources and a relatively small dataset, this study demonstrated the feasibility of using a TCN to model this nonlinear component. Future work will focus on applying prospective and retrospective corrections based on this characterization to the gradient waveforms in order to improve image quality for spiral sequences.
Anais ARTIGES (London, United Kingdom) , David LEITAO , Tom O’REILLY , Andrew WEBB , Shaihan MALIK
11:15 - 12:00 #54353 - P217 Adapting the Halbach Array for Open-Face Design for Head Imaging using Ultra-Low-Field MRI.
P217 Adapting the Halbach Array for Open-Face Design for Head Imaging using Ultra-Low-Field MRI.

Ultra-low-field MRI (ULF MRI) is attractive for portable, lower cost brain imaging, but most permanent magnet systems rely on closed cylindrical Halbach geometries that reduce patient comfort [1-3] or a yoke based system that does not maximize the placement of magnetic material, leading to much higher system weight and cost to achieve a comparable magnetic field. Because ULF MRI typically operates below 100 mT and image quality depends strongly on both mean field strength and field homogeneity, the magnet layout must be optimized carefully rather than opened arbitrarily [2,9]. This work investigated whether an open-faced permanent magnet array could retain sufficient performance while increasing the field of view and reducing the claustrophobic enclosure of the scan.

Two geometries were modelled: an open-faced cylinder and a helmet shaped partial Halbach array [4,5]. Magnet placement was simulated in both MagTetris (MATLAB) and Magpylib (Python), allowing the 30 cm base Halbach model to serve as a cross-validation benchmark [6-8]. Design specifications were derived from real world manufacturing and imaging constraints, including the use of readily obtainable magnet shapes, a target inhomogeneity below 25,000 ppm, a mean field strength near 60 mT, and a patient field of view between 120° and 180° with a bore large enough for adult brain imaging [9]. The design was constrained toward practical assembly by favouring a single magnet shape whenever possible, to emphasize manufacturability alongside magnetic performance. Three optimization algorithms were compared across three configurations: a structured open-faced Halbach array with 1,134 magnets over 18 layers, a random open-faced cylinder with 2,160 magnets over 18 layers, and a structured open-faced helmet with 436 magnets over 26 layers [4,5]. The optimization algorithms used included genetic algorithm, particle swarm, and differential evolution [10-12]. The genetic algorithm was selected as the primary method, with differential evolution used to improve convergence [13]. The decision matrix weighted changes per iteration, computation time, scope of changes, field strength and homogeneity, and adherence to technical specifications. The objective function favoured a target mean field strength of 60 mT. It minimized inhomogeneity, and the best genetic algorithm result was later used as a start for differential evolution to escape local optima during high performance computing runs [13].

After benchmarking the explored optimizers on multiple starting configurations, we selected a genetic-algorithm (GA) workflow to produce the configuration carried forward to the final design. Particle swarm and differential evolution variants were also tested but required more aggressive parameter tuning to match the GA's stability within our compute budget and did not show clear advantages for the configurations considered. The finalized Magpylib-derived array contains 2,182 magnets arranged across seven concentric rings with a 120° facial opening; its Magpylib simulation yielded a mean field strength of 59.70 mT and an inhomogeneity of 252,942 ppm. These results indicate the design attains the target field strength but remains short of the homogeneity goal. For reproducibility we provide all numerical results and figures from the Magpylib workflow; MagTetris was used only as a cross validation reference.

The Magpylib-based results indicate an open-faced ULF MRI magnet array can achieve the target mean field strength but currently falls short on homogeneity needed for imaging. Compared with the OSI2 30 cm Halbach magnet [8], which targets roughly 50 mT in a 322 mm bore and is optimized to maximize homogeneity, our design reaches a slightly higher mean field strength but sacrifices the uniformity that a closed Halbach-style geometry is intended to preserve. Based on algorithm benchmarking we adopted a genetic algorithm workflow for the final design and focused the writeup on a single, reproducible Python pipeline; MagTetris was retained only as a cross check. The main limitation remains field homogeneity, which is consistent with the open bore geometry and the large asymmetry introduced by the facial opening. Further improvement would likely require reducing the opening angle, increasing the number of layers, or applying shimming to improve field uniformity. Focusing on the Magpylib workflow streamlines reproducibility while keeping an option to cross-validate with alternate simulators when needed.

The work demonstrates a promising path toward a patient friendly open faced ULF MRI magnet array, but further homogenization, verification, and model reconciliation are required to reach a clinically viable design. More broadly, the study shows that a partially open Halbach-like magnet structure can preserve a usable field strength while offering an improved patient field of view, but the design still requires substantial refinement before it can be considered an imaging ready system.
Jacob BEAUDOIN (Calgary, Canada) , Laura HALL , Jad BEYK , Basil ABDELNAFIE , Aseel IBRAHIM , Hidehiro SHIMIZU , Ricardo AGUILAR TREJO , Ethan MACDONALD
11:15 - 12:00 #54330 - P218 A simulation framework for eddy-current reduction in portable low-field MRI.
P218 A simulation framework for eddy-current reduction in portable low-field MRI.

Low-field (LF) MRI scanners operate outside shielded rooms and often employ metallic shieldings against environmental noise. Yet, compact portable architectures limit the separation between gradients and surrounding metals [1]. For reaching clinical deployment, certification requirements related to structural robustness and reliable grounding must be met. Hence, the use of metals becomes essential. However, they generate eddy currents that, combined with the intrinsically low SNR of LF-MRI [2], constrain scan times. In multi-echo sequences, eddy currents impose short echo-train lengths (ETL) to prevent artifacts, often prolonging scan times beyond clinically acceptable limits [3]. Here, we present and validate a tool to comprehend and minimize induced eddy fields along B0 in the field of view (FOV) in complex, realistic scenarios relevant to LF-MRI.

Eddy currents are modeled using a finite-element-methods (FEM) framework in COMSOL. For experimental validation, we place the core (magnet, gradients, and RF coil) of our “Physio1” scanner [3] in a metal-free environment, and a cylindrical phantom with a 1-cm RF-loop coil at the isocenter. Eddy currents are induced in aluminum plates at different positions by pulsing the gradients (Fig. 1). The induced field is retrieved from the phase difference between signals acquired after positive and negative gradient pulses (10 mT/m, 400 µs ramp-down) as indicated in Eq. 1 [4]. A time-domain simulation is first used to validate the environment. However, requirements of short time steps to capture fast signal decays and fine meshing needed to resolve skin depth effects [5] make this approach unsuitable for parametric sweeps. Therefore, a simplified frequency-domain model with fixed excitation (2.5 kHz=1/t_rise) is adopted to predict relative trends. Simulations are compared with measurements at t=0 ms. To assess scalability in a more structurally complex system, the methodology is also applied to the “NextMRI” scanner [6]. Measurements are acquired at the isocenter and ±5 cm along each axis. Three operational scenarios are evaluated: (1) Complete structure, (2) without external shielding, and (3) outside the structure (Fig. 1). For each case, image-based analysis is performed with fixed echo spacing (5 ms) and increasing ETL to assess eddy-current impact on image quality.

Figure 2 shows validation in “Physio1”, including time and frequency-domain simulations for one and two aluminum plates displaced along X. The latter also includes simulated B_eddy distributions across the full FOV. Validation in “NextMRI” is shown in Fig. 3, which presents simulated B_eddy distributions across the FOV and measured decay curves at four locations, revealing spatially dependent dynamics. Simulated and measured B_eddy at t = 0 ms are compared for all measured positions. Figure 4 shows RARE images acquired with fixed echo spacing (5 ms) and increasing ETL under different configurations.

Time-domain simulations in “Physio1” largely agree with measurements. The frequency-domain approach captures trends at isocenter: GX shows the largest disturbance with plates at X=100 mm, GY negligible fields, and GZ peaks with the plates at center. Interestingly, one plate produces higher fields than two at isocenter due to local cancellation, masking peripheral eddy fields. Therefore, extending the analysis to the full FOV is essential. In “NextMRI”, simulations reproduce the main trends along each gradient axis, except GX at X=-5 cm, which shows discrepancies in measured and simulated trends. Outside the main axes, agreement remains good, although spatial asymmetries are observed in GY. Discrepancies likely arise from unmodeled conductive elements, positioning inaccuracies, and the more complex B_eddy dynamics in "NextMRI". Unlike the controlled “Physio1” experiments, B_eddy curves at several locations exhibit sign reversals (see Fig. 3), suggesting multiple eddy-current modes. Consequently, using t = 0 ms for comparison with frequency-domain simulations, although effective in "Physio1", may be suboptimal for "NextMRI". Nevertheless, the approach captures relative trends and guides structural redesign. Eddy-current effects on image quality became increasingly evident at higher ETL values (Fig. 4). Progressive metal removal improves image quality, with the external shielding producing the strongest degradation. In contrast, the supporting structure shows limited impact. Removing shielding enables shorter scans (29.3 to 1.4 min) with minimal image degradation.

Validation on two scanners confirms the robustness of the FEM approach despite discrepancies in the more complex “NextMRI” system. Using image-based analysis, we have identified the external shielding as the main source of eddy currents. Supported by material characterization studies [7], a thinner shielding providing sufficient RF attenuation is proposed, while simulations will guide geometry optimization to minimize eddy currents in future mechanical setups.
Lorena VEGA CID (Valencia, Spain) , Jose BORREGUERO , Eli G. CASTANON , Rubén BOSCH ESTEVE , Marina FERNÁNDEZ GARCÍA , Teresa GUALLART-NAVAL , Pablo BENLLOCH , Luiz G C SANTOS , Jesus CONEJERO RODRIGUEZ , Pablo MORENO DOMINGO , Eduardo PALLÁS , Laia PORCAR , Jose Miguel ALGARÍN , Fernando GALVE , Joseba ALONSO
11:15 - 12:00 #54190 - P219 Noise cancellation based on external sensing coils is suboptimal for low-field MRI.
P219 Noise cancellation based on external sensing coils is suboptimal for low-field MRI.

Portable low-field MRI [1, 2] (LF-MRI) can be suitable for operation outside conventional RF-shielded rooms, where scanners are exposed to environmental electromagnetic interference (EMI). Several strategies can be used to mitigate EMI in this context, including passive shielding, grounding, optimized coil, electronic design, or post-processing correction. A popular approach is noise cancellation (NC) based on external sensing coils [3-5]. However, NC techniques share a fundamental physical limitation: by estimating and subtracting EMI using sensing coils, the process invariably contaminates the resulting image with noise that does not correlate with that in the main receive coils, i.e. thermal noise in the sensing coils and in their individual RF chains, including amplifiers, filters, and cables [6]. Post-processing therefore carries an intrinsic cost: in the best possible scenario, the post-cancellation signal-to-noise ratio (SNR) is upper-bounded by the limit where noise has been fully pre-eliminated with RF shielding and grounding [7-9] and can even fall below the unprocessed condition. In this work, we experimentally evaluate the intrinsic cost of active EMI cancellation in a low-field MRI system.

All experiments were performed on a 72 mT MRI scanner [1] (Figure 1), operated via the MaRCoS [10] platform with the MIMO extension [11] and the MaRGE graphical interface [12]. The MIMO extension integrates six SDRlab-based Red Pitaya boards and a gradient controller. The main RF coil was a solenoid of 15 cm length and 15 cm inner diameter, wound with 44 turns of 1.5 mm enameled copper wire. The sensing coils were planar spirals of 4 turns wound with 1.0 mm enameled copper wire at a uniform inter-turn pitch of 1.5 mm, yielding an inner diameter of 35 mm and an outer diameter of 44 mm. Each coil was individually tuned and matched to 3.04 MHz and 50 Ω. We positioned two sensing coils (S1 and S2) on opposite sides of the MRI scanner bore. A function generator (RSDG 1032X, RS Pro), connected to a solenoidal probe (20 cm length, 20 turns, 20 cm diameter), injected a 10 Vpp sinusoidal interference signal close to the Larmor frequency. We adjusted the coil positions until the condition EMIS1 > EMIRF > EMIS2 held. Noise spectra and phantom images were acquired using a RARE sequence (BW = 50 kHz, ETL = 2, TE/TR = 10/800 ms, matrix = 200 × 200 × 9, FOV = 16 × 16 × 16 cm³, one single scan). We acquired two sets of images: (i) a reference acquisition without injected interference, where we measure a noise level corresponding to approximately 1.2x the thermal 50-Ohm limit; and (ii) an acquisition with the externally generated EMI. We processed the data using the EDITER method [3] for EMI suppression in three configurations: (i) using the signal from S1; (ii) using the signal from S2; and (iii) using both. The SNR was estimated as the mean value divided by the standard deviation in a region of interest (ROI) corresponding to a homogeneous volume in the phantom.

Figure 2 shows the noise spectra for the baseline without EMI injection and three channels with EMI injection. Figure 3 shows the images and k-spaces corresponding to baseline characterization, EMI contaminated and the results after EDITER processing using different sensing coils.

Although EMI was estimated and removed using external sensing coils, the post-processing results did not recover the reference noise condition. The reference acquisition reached an SNR of 18.4, whereas the EMI-contaminated acquisition dropped to 12.5. After EDITER-based cancellation, the measured SNR remained low for all configurations: 13.3 using S1, 4.3 using S2, and 13.3 using both sensing coils. Therefore, while cancellation may reduce coherent EMI artifacts, this does not necessarily imply recovery of the original SNR. Note that we have intentionally placed the EMI outside of the ROI so that SNR measurements are sensitive to noise in a bandwidth where uncorrelated contributions dominate. These observations support the theoretical framework proposed in Ref. [6]. In sensing-coil based ANC, the external coils do not measure EMI alone; they measure EMI plus their own thermal and electronic noise contributions. When this noisy estimate is used for subtraction, the correlated EMI component can be reduced, but uncorrelated sensing-chain noise is partially transferred into the corrected MRI signal. As a result, noise cancellation is not a noise-free correction mechanism but a trade-off between EMI suppression and additional noise injection, and the resulting images are inevitable noisier than they would be if noise were pre-eliminated with adequate grounding.

This study experimentally demonstrated that active EMI cancellation in low-field MRI carries an intrinsic performance cost that cannot be neglected when evaluating post-processing approaches for interference mitigation.
Luiz Guilherme DE CASTRO SANTOS (Valencia, Spain) , José Miguel ALGARÍN , Joseba ALONSO
11:15 - 12:00 #54715 - P220 Machine Learning Based Denoising of Very Low Field MRI.
P220 Machine Learning Based Denoising of Very Low Field MRI.

While high field MRI systems are able to achieve high quality images for clinical use, their high field can be restrictive due to their high price, noise during operation, and high static field making them unusable for part of the population such as premature babies [1] [2]. In order to make MRI more accessible, less expensive and even portable, the CEA - SPEC is currently developing a very low field MRI at 10mT aimed at adult brain imaging and for premature babies in incubator (Fig. 1). With such a low field, there is no need for superconductors. Water-cooled copper coils are sufficient to create the B0 field, considerably decreasing the cost, complexity and hazardous nature of the system. However,decreasing the B0 field also decreases the Larmor frequency and thus increases the acquisition time resulting in longer acquisition time or lower signal-to-noise ratio (SNR) / resolution. Among the existing approaches to improve the SNR and resolution, we are focusing on the development of machine learning techniques in order to improve the quality while reducing the acquisition time with the goal of making the system usable in a clinical scenario.

Two different methods are currently being investigated in order to improve the SNR of the images. The first one is a classic post-acquisition denoising method using state-of-the-art denoiser models such as DnCNN [3], DRUNet [4]or SwinIR [5] that are fine-tuned on very low field MRI images [6]. The denoiser models are used along with inverse problem solving such as Plug and Play(PnP) [4] or Regularization by Denoising (RED) [7] to improve reconstruction.Reconstruction models such as RAM [8] are also studied. This approach proves to be efficient, however, as the MRI system is available for modifications, another approach is explored : noise estimation using sensing coils. By placing small coils around the MRI system, it is possible to estimate the noise captured by the antennas using a neural network and then subtract the noise from the signal in order to recover a clean MRI signal [9] [10] [11].

Post-acquisition denoising with fine-tuned state-of-the-art models are able to considerably improve the peak signal-to-noise ratio (PSNR) and structural similarity index of measurement (SSIM) [12] as it can be seen on Fig 2. It should also be noted that the ground truth is not known thus making it difficult to verify the quality of the denoising. Instead, the images are compared to images with many acquisition increasing the SNR or to acquisition on a higher field MRI which introduce a limitation on the evaluation of quality which cannot outperform the quality obtained with longest acquisition time.

The lack of dataset of MRI images at 10 mT makes the full training of models impossible. Fine-tuning is, for now, the only way to effectively train models on very low field MRI images, thus inducing a possible bias in the model even if no bias was observable on the denoised images. As the second approach with noise sensing coils is still in implementation, no result are yet available to prove the effectiveness of this technique.

Even if few results are available so far, machine learning methods seem to be an effective approach to improve image SNR. Future work will be focused on the denoising with the noise sensing coils to assess the effectiveness of this approach, acquisition of more images in order to create a bigger dataset and test of other type of denoiser models architecture.
Thomas BOULANGER (Paris-Saclay) , Claude FERMON , Mathieu THEVENIN , Aurélie SOLIGNAC
11:15 - 12:00 #54590 - P221 Low-Field MRI Reconstruction with Diffusion Models Using the Preconditioned Unadjusted Langevin Algorithm.
P221 Low-Field MRI Reconstruction with Diffusion Models Using the Preconditioned Unadjusted Langevin Algorithm.

Low-field (LF) MRI is an emerging research area with several advantages over conventional high-field MRI, including lower cost, greater accessibility, and enhanced safety. However, it is limited by reduced image quality and a lower signal-to-noise ratio. Deep priors have demonstrated strong performance in reconstructing highly undersampled high-field MRI data [1,2], making them a promising approach for improving LF MR imaging [3]. A key challenge, however, is the limited availability of LF datasets, which has often necessitated the use of simulated LF data for training [4]. This abstract shows, first, that diffusion models combined with sampling methods such as the preconditioned Unadjusted Langevin Algorithm (ULA) show visually promising image quality compared to conventional LF reconstruction approaches, including FFT and Block-Matching with 3D filtering (BM3D). Second, it shows that the diffusion network can be successfully trained using high-field MRI data and afterward applied to LF data.

We took the pretrained network from [5] which is trained on 320 x 320 images with three different contrasts from the fastMRI brain dataset [6]. For detailed training description see [1]. Data acquisition: The data was acquired on an in-house 50 mT MR scanner [7], based on the design of the OSI² ONE system [8] with a healthy volunteer. An elliptical solenoid coil was used for transmit and receive. We acquired two single-coil fully sampled k-space data with a 3D RARE sequence (TR = 500 ms, echo spacing = 20 ms, ETL = 5, FOV = 240 mm x 200 mm x 150 mm, voxel size = 2 mm x 2 mm x 5 mm, averages = 1) with different bandwidths (15 kHz and 20 kHz). Data processing and reconstruction: We extract different slices after applying the inverse FFT in slice direction. We normalize the k-space to obtain a standard deviation of 1 and resized the k-space to 320 x 320 in order to fit the model input. We estimated the single coil using NLINV and scaled the coil sensitivities to obtain a normalized image with a magnitude of approximately 1. We then threshold the coil sensitivity to get a background mask which was multiplied to the coil sensitivities and during sampling. We then drew 20 samples using preconditioned ULA [1] with 20 preconditioning steps, N = 60 noise scales and K = 4 Langevin steps for an exponential decay of the noise schedule between a minimum and maximum standard deviation of 0.01 and 10. Furthermore, we calculated the mean and standard deviation over these samples. For comparison, we applied an inverse FFT to the k-space, reconstruct it using L1- and total variation (TV)- regularization with BART [9] and preprocessed the image after the inverse FFT with BM3D using the python package bm3d version 4.0.3. For the BM3D magnitude-only images were used. A grid search was performed to tune the parameters of the respective methods where the optimal settings were selected based on a visual comparison of the resulting outcomes. These methods are performed on all slices of the k-spaces containing brain information where the grid search was only performed on the respective slice.

Figure 1 and 2 show the comparison between inverse FFT, L1-Wavelet- and TV- regularizer, BM3D and the sampling result per sample, mean and standard deviation for a selected slice for both bandwidths. Both figures show that the diffusion model obtain visually better reconstructions than the conventional methods without the need of parameter grid search. Additionally, a red arrow in Figure 1 shows that a sulcus is removed by the network in some samples. However, the sulcus is clearly visible in the mean image and the standard deviation shows uncertainty of the network in this area. Figure 3 shows the performed grid search for the regularization parameter (TV and L1-Wavelet) and the filter parameter (BM3D) for different bandwidths. The yellow rectangular window indicates the chosen images in Figure 1 and 2. Figure 4 presents the results across different slices, where the diffusion model shows consistent performance throughout all slices.

Diffusion networks trained on high-field data can serve as a prior for LF data reconstruction, despite the fact that the training process does not account for LF-specific noise characteristics and that LF image contrast may differ from the high-field contrast distribution on which the model was trained. Nevertheless, the results suggest that an exact match to the underlying prior distribution is not required to achieve visually high-quality reconstructions compared to conventional methods. Moreover, structural loss introduced by these methods can be mitigated using standard deviation maps.

Diffusion models trained on high-field data in combination with pULA can visually improve LF reconstructions compared to other conventional methods.
Tina HOLLIBER (Graz, Austria) , Julia PFITZER , Moritz BLUMENTHAL , Hermann SCHARFETTER , Martin UECKER
11:15 - 12:00 #54498 - P222 Denoising 2D ASL: A Low-Field MRI Feasibility Study for Clinical Psychiatry.
P222 Denoising 2D ASL: A Low-Field MRI Feasibility Study for Clinical Psychiatry.

Quantitative cerebral blood flow (CBF) assessed with arterial spin labeling (ASL) is an increasingly used non-invasive imaging biomarker in psychiatry, which has shown sensitivity to depression treatment response [1]. Low-field MRI scanners offer a much more accessible and cost-effective option for psychiatric neuroimaging compared to standard 3T systems. However, their lower baseline signal-to-noise ratio (SNR) poses a challenge for ASL; the Buxton model predicts a roughly twofold SNR decrease when moving from 3T to 0.6T systems, taking into account resolution [2]. Deep learning denoisers could help to improve SNR. Recently, a SwinIR-based network demonstrated state-of-the-art results for denoising 3T ASL using a 3D readout [3]. In this study, we aimed to denoise 2D pseudo-continuous ASL (pcASL) maps under low-SNR conditions using this model, as they have been used in a clinical psychiatry study. Our goal was to determine whether we can reliably denoise ASL images in a clinical study after lowering CBF SNR.

We used data from the EMBARC randomized clinical trial on antidepressant response efficacy. Pseudo-continuous ASL was acquired with 35 interleaved label-control pairs at a resolution of 3×3×5 mm3. The first 62 subjects of a selected single site subcohort were processed with ASLprep [4] and pseudo-randomly stratified by age and sex into training (n=52, 41.6±14.2y, 35F/17M), validation (n=5, 43.1±11.7y, 3F/2M), and test (n=5, 42.5±13.6y, 3F/2M) subsets. To approximate the degraded SNR of low-field scanners, we took subsets of control-label pair acquisitions. Control-label pairs were subtracted and averaged prior to feeding them into the network for training, initializing the SwinIR model with the weights trained on 3D-GRASE acquisition [3]. Lower-SNR CBF maps were generated using restricted subsets of 5, 10 and 20 temporal pairs, averaged, and then denoised in a single forward pass. The target was the mean CBF map of all 35 pairs. SNR, structural similarity (SSIM), and normalized mean-squared error (NMSE) were computed against the reference inside whole brain (WB) and gray-matter (GM) masks, respectively.

The trained denoising model produced consistent improvements across all three metrics (Table 1). At N = 5 pairs, whole-brain SNR increased by an average factor of 1.5, SSIM by 1.2, and NMSE dropped by over half compared to the noisy baseline. Similar improvements were seen at N = 10 (SNR 1.5; NMSE 0.57) and were only marginally attenuated at N = 20 (SNR 1.4; NMSE 0.83). Improvements in GM were comparable to whole-brain. Pooled in-brain CBF distributions (Fig. 1) collapsed onto the reference at N ≥ 10, while noisy distributions remained substantially broader. Single-slice denoised maps (Fig. 2) recovered cortical structure from heavily corrupted N = 5 inputs without visible artifacts.

The fine-tuned SwinIR transferred from 3T 3D-GRASE to 2D-EPI ASL, recovered image quality that would otherwise require longer acquisitions. The gains were slightly smaller than values found by Shou et al. (SNR gain of ~2.5x). A practical strength of this architecture is its variable-length input training, which suits the heterogeneous protocols across vendors in clinical practice. The flip side appeared when using N = 20: as the noisy input itself approaches the reference, the network oversmooths, producing diminishing gains. The network is therefore most useful in the short-scan regime (N ≤ 10, ≈ 1 min), which would approach low-field psychiatric workflow SNR, and offers little benefit to already well-averaged scans. As kinetic modeling predicts a roughly twofold SNR decrease when moving from 3T to 0.6T systems [2], our network's recovery successfully bridges the majority of this hardware gap. Our largest limitation is currently a dependent ground truth at 35 temporal pairs, which remains inherently noisy. Future work should additionally focus on the effects of denoising for patient outcomes, such as effects of signal in the Anterior Cingulate Cortex and its efficacy for treatment outcome prediction.

Fine-tuning a SwinIR denoiser pretrained on 3T data yields robust SNR, SSIM, and NMSE improvements on 2D-EPI ASL while preserving mean GM CBF and accommodating variable scan lengths. By improving quality from short acquisitions, the approach makes quantitative perfusion imaging more feasible on low-field MRI systems, which are likely to bring psychiatric neuroimaging within reach of clinical mental-health services.
Jerke J. VAN DEN BERG (Amsterdam, The Netherlands) , Liesbeth RENEMAN , Matthan W.a. CAAN , Henk A. MARQUERING
11:15 - 12:00 #54396 - P223 NexOP: AI-driven multi-NEX sampling-reconstruction optimization exposes pyramidal acquisition strategies for low-field MRI.
P223 NexOP: AI-driven multi-NEX sampling-reconstruction optimization exposes pyramidal acquisition strategies for low-field MRI.

Low-field MRI offers a portable, cost-effective alternative to high-field systems [1–7] but suffers from an intrinsic SNR deficit [1,2]. To compensate, protocols use repeated excitations (NEX), creating a critical trade-off between image quality and scan duration. Although deep learning (DL) has been applied to accelerate MRI scans by optimizing k-space sampling and reconstruction [8–11], these methods typically target single-NEX acquisitions or apply an identical mask across all repetitions; the NEX dimension therefore remains largely unexploited. Here we introduce NexOP, an AI-driven framework that jointly optimizes a multi-NEX sampling strategy and a DL-based reconstruction to improve image quality in accelerated low-field MRI scans.

Framework overview. NexOP consists of two jointly optimized modules (Fig. 1): (i) a Sampling Module that learns distinct k-space masks for each repetition, distributing the sampling budget across both k-space and the repetition dimension; and (ii) a Reconstruction Module that maps undersampled multi-repetition measurements to a single high-quality image. The modules are trained jointly under a fixed sampling budget constraint. NEX-aware sampling. The Sampling Module generalizes single-acquisition mask optimization [8] to the multi-repetition setting by learning distinct k-space probability maps for each repetition. Unlike prior methods that use a single, fixed mask, NexOP allows the sampling density to vary across repetitions. To enable optimization despite the discrete sampling process, we use the Gumbel-Softmax relaxation with a Straight-Through estimator [12], which generates binary sampling masks during the forward pass while allowing gradients to flow back to the sampling parameters. The sampling densities are learned offline and fixed at inference (Fig. 1). Multi-NEX reconstruction. Unlike the standard approach of reconstructing each repetition independently and averaging the outputs, we introduce a new DL architecture (the Reconstruction Module) that jointly processes multi-repetition data to reconstruct a single, quality-enhanced image. This module comprises cascaded Multi-Repetition (MR) Steps (Fig. 1); these leverage shared information across repetitions via a joint neural network while enforcing per-repetition data consistency to maintain fidelity to the acquired measurements. Data and experiments. Experiments were conducted on the M4Raw 0.3 T brain dataset [13] (NEX = 3 repetitions; T1- and T2-weighted contrasts; 128/25/30 train/val/test subjects). NexOP was compared against five baseline methods: (i) Poisson-Disc undersampling; (ii) multi-NEX variable-density undersampling [14]; (iii) LOUPE (Learning-based Optimization of the Undersampling PattErn) [8] (NEX = 1); and (iv, v) two LOUPE extensions, each optimizing a single mask shared across all repetitions (NEX = 2 or NEX = 3). For a fair comparison, all methods were trained with the same sampling budget, Reconstruction Module, and L2 loss function.

Quantitative results: NexOP consistently achieves the highest PSNR, SSIM, and FSIM (Feature SIMilarity index) scores across all tested acceleration factors (R = 5, 6, 9) for both T1- and T2-weighted contrasts (Fig. 2). This indicates that jointly optimizing the spatial sampling and the NEX distribution provides superior image quality compared to fixed, non-adaptive repetition strategies. Learned sampling strategies: NexOP learns distinct, complementary k-space probability maps for each repetition, in contrast to LOUPE-based methods that optimize a single mask for all repetitions (Fig. 3a). Strikingly, NexOP converges to a pyramidal sampling strategy, with monotonically decreasing k-space coverage across repetitions, allocating denser sampling to the first repetition and progressively sparser coverage to subsequent ones (Fig. 3b). Qualitative results: NexOP also achieves superior qualitative performance, as demonstrated in Fig. 4; arrows indicate anatomical structures better reconstructed by NexOP.

Unlike prior DL methods that target single-NEX acquisitions, NexOP jointly optimizes sampling and reconstruction across repetitions; this approach enables scan acceleration while achieving high image quality in the low-SNR regime. Interestingly, the pyramidal multi-NEX sampling scheme that emerged from the NexOP optimization represents a new, previously unexplored sampling strategy. Moreover, our framework is modular and adaptable across different field strengths, pulse sequences, and acceleration factors; it can hence be used in diverse low-field MRI settings.

NexOP jointly optimizes multi-NEX k-space sampling and reconstruction for low-field MRI, consistently outperforming competing methods across acceleration factors and tissue contrasts. Notably, the learned acquisition strategy follows a pyramidal pattern, with monotonically decreasing sampling across repetitions; this suggests that leveraging the NEX dimension can substantially improve low-field MRI speed and image quality.
Tal OVED , Efrat SHIMRON (Haifa, Israel)
11:15 - 12:00 #54345 - P224 Towards Multiple Sclerosis lesion load quantification with Imageless Magnetic Resonance Diagnosis - an in-vitro validation.
P224 Towards Multiple Sclerosis lesion load quantification with Imageless Magnetic Resonance Diagnosis - an in-vitro validation.

Magnetic Resonance Imaging (MRI) is a powerful tool for clinical diagnosis but its high cost makes it inaccessible for population-level screening or daily usage in primary care settings [1]. Despite Low Field efforts to improve accessibility [2], [3], image formation requires expensive hardware components and long acquisition times. However, some very specific clinical questions, i.e., detection or quantification of a certain pathology, may not require images at all. Imageless Magnetic Resonance Diagnosis (IMRD) bypasses image reconstruction aiming to reduce hardware requirements and shorten scan times [4]. IMRD relies on sequences designed to distinguish between pathology/normal tissue based on time-domain MR signals, a data model to quickly answer the clinical question, and minimal hardware (Figure 1A). Since the IMRD framework is intended to be question-specific, we showcase its validity in silico in this work using Multiple Sclerosis (MS) lesion load quantification as a use case.

We manufactured agarose and CuSO4 mixtures to mimic the tissue properties of white matter (WM), grey matter (GM), and MS lesions [5], and measured the T1 and T2 of every tissue in our scanner (B0 = 260 mT) [6] (Figure 1C and 1B). We used these values to optimise an MRF-like sequence [7] maximising tissue distinguishability, using evolutionary algorithms [8] to find the optimal combination of repetition times (TR) and flip angles (FA). The optimal sequence consisted of an initial inversion pulse, followed by a train of 40 RF pulses with an excitation pulse at a given TR and FA, each followed by a refocusing pulse, capturing the echo's maximum at approximately TR/2. The total duration was about 30 seconds (Figure 2A). Magnitude signals acquired with this sequence were used for two different assessments: 1. First, a set of single-tissue measurements was used for the sequence and Bloch simulator validation, comparing the overlap between simulated signals and acquired ones. Effective flip angles factors (FAeffective=bFA·FAnomina) and effective T1/T2 were fitted jointly and across tissues, respectively. 2. Second, we used another set of measurements combining different amounts of MS (Figure 1C, N = 120) to evaluate different MS-lesion load quantification models: - Algebraic Reconstruction Technique (ART), which performs a least-squares fitting of the Bloch equations to the signals, estimating the present MS volumes, and requires known T1/T2. - Differential Evolution (DE), which is an evolutionary algorithm finding the optimal T1/T2 and tissue volumes, minimising the difference between the observed and reconstructed signals using the estimated parameters. - Fully Connected Neural Networks (FCNN) (Figure 1D), which estimate the MS lesion load with non-linear regression without needing T1 and T2 values. These were trained with MR synthetic data (N = 5000) generated by the Bloch simulator, using the same pulse sequence and tissue properties, and varying tissue volumes between 0 and 7 mL. Performance was assessed via RMSE, R2 and CCC (target: close to 1), and regression slope and offset between predicted and observed values.

Figure 2 shows a schematic of the optimised sequence (A), the effective FA factors and T1/T2 values fitted jointly across tissues (B-D), and the agreement between simulated and acquired signals for each test tube (7 mL) across TRs (E, F), yielding an RMSE < 5%, an R2 > 0.98 and a CCC > 0.98 (G). Figure 3A shows the MS lesion load predictions of ART, DE and FCNNs for the test set of measurements (N = 60). Figure 3B shows the error values between predicted and real MS volumes across techniques and MS volumes.

High R2, CCC and low RMSE from Figure 3 validate the forward Bloch model used to simulate signals, indicating strong agreement between measurements and simulated values, which also validated the gradientless CPMG sequence. These enable MS quantification by different techniques. Among them, ART performs worst, whereas DE still obtains a solid CCC = 0.906, and FCNNs achieve the best MS lesion load quantification after fine-tuning to remove the offset observed in the zero-shot results. An underestimation of MS volume of 3 mL is present in all methods, but a posterior analysis showed consistently lower magnitude values for these test tubes. Potential explanations may be related to imprecise pipetting or improper system tuning.

These results support the validity and feasibility of IMRD frameworks for closed clinical questions, such as MS lesion load quantification. However, these promising results were obtained on a highly homogeneous LF system. Future work will target other less homogeneous LF regimes, such as Halbach systems or surface magnets [9], to explore hardware requirements. Predictions from in-vivo measurements and validation against radiological MS estimates will be key to assess how biological variability could potentially affect pulse sequence optimisation or AI models.
Alba GONZÁLEZ-CEBRIÁN , Pablo GARCÍA-CRISTÓBAL (Valencia, Spain) , Fernando GALVE , José Miguel ALGARÍN , Viktor VAN DER VALK , Efe ILICAK , Marius STARING , Webb ANDREW , Joseba ALONSO
11:15 - 12:00 #54111 - P225 Pruning-based optimization of nested U-Net for noise reduction for low-field brain MRI: Effects of pruning level and patient posture.
P225 Pruning-based optimization of nested U-Net for noise reduction for low-field brain MRI: Effects of pruning level and patient posture.

Magnetic resonance imaging (MRI) is a non-invasive modality that provides high soft tissue contrast and is widely used for brain imaging and neurological diagnosis [1,2]. Clinical MRI has primarily utilized 1.5–3 T high-field systems; however, these systems have limitations, including high cost and limited accessibility [3,4]. Low-field MRI has recently gained attention as an alternative owing to its reduced cost, portability, and open-bore configuration, enabling imaging in various body positions [5,6]. Nevertheless, its inherently low signal-to-noise ratio (SNR) leads to degraded image quality and limited clinical utility [7]. Although deep learning-based noise reduction methods have shown promising results, studies focusing on low-field MRI remain limited [8,9]. The nested U-Net has been shown to improve multiscale feature integration and structural preservation, and its pruning-based strategy enables optimization of the trade-off between noise reduction performance and computational efficiency [10]. However, studies evaluating pruning optimization and posture-related effects in low-field MRI are scarce. Therefore, this study aimed to evaluate a pruning-based nested U-Net model to improve image quality in 0.25-T low-field brain MRI and to analyze the effects of pruning level and patient posture.

Nine healthy adults underwent 0.25-T brain MRI, and 3D T1-weighted images were acquired in both supine and sitting positions using a tilting MRI system with isotropic resolution. For dataset construction, 2D slices were extracted up to the level where the lateral ventricles were no longer visible, resulting in 3,141 reference images. To simulate low-SNR conditions, Rician noise with five levels (σ = 0.02–0.06) was added, generating a total of 15,705 paired images. A nested U-Net-based noise reduction model with deep supervision was implemented, and pruning levels (L1–L4) were applied to optimize the trade-off between noise reduction performance and computational efficiency. Noise reduction performance was evaluated using peak signal to noise ratio (PSNR), structural similarity index measure (SSIM), and mean absolute error (MAE), and statistical analysis was conducted to assess the effects of pruning level and posture (P < 0.05).

The pruning level significantly affected noise reduction performance across all metrics (PSNR, SSIM, and MAE) (all P < 0.001). L3 achieved the highest performance, showing the highest PSNR and SSIM and the lowest MAE, whereas L1 exhibited the poorest performance. Posture-wise comparisons revealed significant differences between sitting and supine conditions at all pruning levels (all P < 0.001), with the supine posture consistently demonstrating higher PSNR and SSIM and lower MAE. Computational cost increased from L1 to L4; however, L4 provided no additional performance gains compared with L3, while L1 and L2 showed inferior image quality. Consequently, L3 was identified as the optimal pruning level, achieving the most favorable balance between performance and efficiency across both postures. Visual assessment supported these findings, with L3 providing the most effective preservation of anatomical structures while suppressing noise, whereas L1 and L2 showed over-smoothing with loss of fine structures, and L4 exhibited less consistent texture preservation.

Low-field MRI has gained attention as an accessible alternative to high-field systems; however, its inherently low SNR degrades image quality and clinical utility [11,12]. In this study, a pruning-based nested U-Net improved image quality in 0.25-T brain MRI, with L3 achieving the most favorable balance between performance and computational efficiency. Posture-wise analysis showed that the supine position provided superior image quality, while L3 maintained stable performance across both postures, indicating robustness to variations in acquisition conditions. The proposed pruning-based approach reduces computational complexity while maintaining high performance, thereby supporting efficient image restoration in resource-limited or point-of-care settings [13,14]. However, this study was limited by a single MRI system, a small cohort, and a 2D slice-based analysis [15,16]. Overall, pruning-based optimization of nested U-Net provides an effective strategy for improving image quality in low-field brain MRI and supports its potential for clinical applications.

In this study, we demonstrated that a pruning-optimized nested U-Net effectively improves image quality in 0.25-T low-field brain MRI. The model showed significant improvements in PSNR, SSIM, and MAE, with L3 providing the optimal balance between performance and computational efficiency while maintaining robust performance across different acquisition postures. These findings support the potential of a pruning-based nested U-Net as an efficient image restoration framework for enhancing the clinical utility of low-field MRI.
Hajin KIM (Incheon, Republic of Korea) , Chang-Soo YUN , Changheun OH , Jun-Young CHUNG , Gun CHOI , Youngjin LEE
11:15 - 12:00 #54486 - P226 Towards the Acquisition-Independence of Microvascular Biomarkers in Diffusion MRI: a Feasibility Study at 0.55T.
P226 Towards the Acquisition-Independence of Microvascular Biomarkers in Diffusion MRI: a Feasibility Study at 0.55T.

Cancer relies on immature, chaotic and leaky vessels for growth and metastasis [1,2]. The tumour microvasculature is thus both a therapeutic target and a guide for treatment response, motivating the need for perfusion biomarkers [3]. Intravoxel incoherent motion (IVIM) [4] is a diffusion-weighted MRI (dMRI) technique that probes microvascular perfusion without contrast agents, valuable for longitudinal studies and screening of at-risk groups. Although IVIM captures pathological changes [5,6], its parameters have limitations. The perfusion fraction (fᵥ) shows an echo-time (TE) dependence arising from the T2 difference between blood and parenchyma [7,8], while the pseudo-diffusion coefficient (D*) is difficult to estimate and highly variable across acquisitions [7]. Numerical simulations of blood flow through realistic capillary beds can increase the biological specificity of dMRI for perfusion quantification [9,10]. Using our simulation framework SpinFlowSim, we showed that under clinical conditions (SNR = 5), two independent microvascular parameters can be reliably estimated from the vascular signal. Namely, the mean volumetric flow rate (qₘ) and an Apparent Network Branching index (ANB), reflecting the segments traversed by spins in a 100 ms reference time [10,11]. These findings were obtained at 1.5T and 3T, yet lower-field systems (<1.5T) are gaining interest for their accessibility, reduced susceptibility artifacts [12,13], and application in abdominal dMRI [14] and placental IVIM [15]. Motivated by this, we evaluate the feasibility of mapping SpinFlowSim-derived microvascular biomarkers at 0.55T and assess their TE-robustness against conventional IVIM parameters.

In Vivo: A 24-year-old male healthy volunteer (HV) was scanned on a 0.55T Siemens MAGNETOM Free.Max system using a PGSE-EPI sequence: b = {0, 10, 20, 40, 70, 100, 300, 600, 900} s/mm² at three echo times TE = {75, 90, 105} ms; TR = 6600 ms; voxel size 2.97 × 2.97 × 4.8 mm³; NEX = 2; GRAPPA = 2; 6/8 Partial Fourier. After post-processing [16,17], the conventional IVIM model was fitted using segmented-fitting [4]: s/s₀ ≈ fᵥ·exp(−b·D*) + (1 − fᵥ) [E1] to extract fᵥ and D*. In parallel, qₘ and ANB were estimated voxel-by-voxel from this isolated vascular signal, using our published SpinFlowSim approach [10,11]: (i) vascular signals are synthesized from a freely-available dataset of 15 microvascular networks for a protocol matching the in vivo acquisition, and (ii) qₘ and ANB are estimated by maximum-likelihood fitting of a numerical model built on these signals. The four metrics (fᵥ, D*, qₘ, ANB) were computed within 4 manually-segmented ROIs (liver, spleen, kidney cortex, kidney medulla) as mean ± SD. TE-dependence was assessed in the liver, with differences between TEₘᵢₙ= 75 ms and TEₘₐₓ= 105 ms tested by Mann–Whitney U tests with Bonferroni correction (n = 4). In silico: The SpinFlowSim 1500-network dataset was used to synthesize vascular signals matching the three in vivo gradient timings (Δ = 36.9, 44.4, 51.9 ms; δ = 19.4, 26.9, 34.4 ms) and b = {0, 10, 20, 40, 70, 100} s/mm², with Rician noise (SNR = 20). qₘ and ANB were estimated with the same pipeline as in vivo, and D* by least-squares fitting of s/s₀ = exp(−bD*). TE-dependence was assessed by Kruskal–Wallis test with Bonferroni correction (n = 3).

Fig. 1 shows voxel-wise qₘ and ANB maps at 0.55T reflecting microvascular heterogeneity across the HV's abdominal organs. Tab. 1 reports the highest qₘ (0.61 ± 0.10 × 10⁻³ mm³/s) and ANB (62.72 ± 11.57 segments/100 ms) in the liver, consistent with its highly perfused, branched microvasculature, and the lowest values in the kidney cortex (qₘ 0.29 ± 0.11 × 10⁻³ mm³/s; ANB 29.85 ± 15.34 segments/100 ms). Fig. 2 shows that in the liver, fᵥ increased significantly with TE (p < 0.001), while D* showed a non-significant decreasing trend after correction. In contrast, qₘ and ANB showed no significant variation across TEs. Fig. 3 shows that across 1500 synthetic networks, qₘ and ANB remained consistent across all TEs, while D* varied significantly with TE (p < 0.05).

Our findings indicate that microvascular mapping with SpinFlowSim is viable at 0.55T. Despite the reduced contrast-to-noise ratio and SNR, qₘ and ANB characterised and differentiated microvascular environments across abdominal organs. Notably, both metrics appear robust to TE variation in silico and in vivo, whereas in vivo fᵥ replicated the expected TE-dependent bias [7,8]. D* also varied, consistent with its diffusion-time dependence [18] and noise sensitivity [7]. While further validation is needed, these preliminary findings support SpinFlowSim metrics as acquisition-independent microvascular biomarkers.

Mapping the SpinFlowSim biomarkers qₘ and ANB appears feasible at 0.55T and less susceptible to the T2-related biases confounding conventional IVIM. Our results encourage the use of simulation-informed microvascular properties as biomarkers of perfusion changes in diseases such as cancer.
Anna VORONOVA (Barcelona, Spain) , James ROBERTSON , Raquel PEREZ-LOPEZ , Jo HAJNAL , Emma MUÑOZ-MORENO , Andrada IANUS , Francesco GRUSSU
11:15 - 12:00 #54676 - P227 High-resolution ultra-low-field MRI with SNRAware denoising.
P227 High-resolution ultra-low-field MRI with SNRAware denoising.

Ultra-low-field (ULF) [BL1.1][EC1.2]MRI offers portability, lower cost, and reduced siting requirements compared to its high-field counterpart [1]. Its primary limitation remains the reduced signal-to-noise ratio (SNR) inherent to low magnetic fields [2]. Software denoising offers an attractive route to overcome this challenge [EC2.1][3], including both classical methods (e.g. BM4D) and deep learning (DL) approaches. SNRAware (Fig. 1a) [4], a recently introduced DL framework based on SNR-unit training and g-factor augmentation, has shown strong performance at field strengths > 0.5 T. Here, we evaluate its generalization to sub-0.1 T MRI across extremity and brain imaging, multiple scanners, and acquisition conditions designed to probe the practical limits of AI denoising in real ULF settings [5].

Experiments were performed on portable Halbach MRI systems operating at 90 mT for extremity imaging (Fig. 1b) [6], and 47 mT for brain imaging (Fig. 1c) [7]. A pretrained SNRAware denoising model [4], trained on 3 T data, was applied on all datasets, acquired using 3D-RARE sequences. As an initial benchmark, we evaluated a high-resolution wrist acquisition (0.8 x 0.8 x 3.1 mm³) at 90 mT, comparing conventional FFT reconstruction, classical BM4D denoising, and SNRAware. Robustness was assessed in phantom experiments under varying conditions, including changes in readout duration/acquisition bandwidth (2 to12 ms), receiver impedance matching (-20 to -3 dB), environmental noise ranging from near-optimal conditions (1.2x Johnson noise) to strongly elevated levels (6.2x), and Partial Fourier (PF) undersampling with 60 % k-space filling. Generalization across anatomies, contrasts, orientations, and scanners was evaluated using knee, wrist, and brain datasets, including knee T1w (0.3 x 0.3 x 3 mm³) and IR (1 x 1 x 5.3 mm³) acquisitions in axial, sagittal, and coronal orientations; wrist T1w (0.4 x 0.4 x 3.1 mm³) and IR (0.8 x 0.8 x 3.1 mm³) acquisitions; and brain PD (1 mm³ isotropic) and IR (0.75 × 0.75 × 2 mm³) imaging.

Figure 2 [BL3.1]presents the high-resolution wrist benchmark comparing FFT, BM4D, and SNRAware reconstructions. Figure 3 presents phantom experiments under varying acquisition conditions. Figure 4 presents in-vivo extremity and brain acquisitions, illustrating performance across anatomies, contrasts, orientations, and scanners.

As shown in Figure 2, SNRAware outperformed BM4D, achieving stronger noise suppression while better preserving anatomical detail. SNWAware residual [EC4.1]images indicated predominantly noise-like remaining variance, whereas BM4D residuals retained structured anatomy, consistent with detail loss after filtering. Because SNRAware operates in complex, rather than magnitude, image space, it better reflects the underlying MRI noise statistics, which may contribute to its improved performance in low-SNR conditions. Phantom experiments demonstrated robust performance under realistic, relevant acquisition scenarios. Reconstructions improved with longer readouts, likely reflecting the model’s lack of exposure during training to low-field intensity modulation effects. Proper impedance matching also influenced image quality, while performance degraded under elevated environmental noise[BL5.1][EC5.2], underscoring the importance of minimizing hardware noise [8]. PF undersampling reduced fidelity but may remain a practical trade-off for accelerating low-field acquisitions. Notably, the model generalized well despite being trained exclusively on 3 T data, extending across ULF extremity and brain imaging, multiple contrasts, orientations, anatomical regions, and scanners. Particularly notable was the recovery of anatomical detail in challenging low-SNR inversion-recovery/STIR acquisitions. The resulting SNR gains also enabled acquisitions matching nominal spatial resolutions commonly used in clinical MRI protocols, including 0.3 x 0.3 x 3 mm³ knee imaging and 1 mm³ isotropic brain imaging. Importantly, matching nominal voxel size does not imply equivalent image quality to high-field MRI, since contrast behavior, field homogeneity, gradient performance, and the intrinsically lower starting SNR at ULF remain limiting factors.

SNRAware expands the practical capabilities of ULF MRI, enabling higher-resolution acquisitions and image quality that approaches clinically useful standards in portable systems. The predominantly noise-like residuals observed across experiments suggest that the model acts as a noise suppressor rather than performing implicit image restoration or hallucination. Its robust performance further demonstrates successful transfer to ULF imaging despite being trained outside this domain. By enabling higher spatial resolutions than previously practical at these field strengths, SNRAware may shift the dominant bottleneck in ULF MRI from SNR to acquisition time, reinforcing the importance of accelerated acquisition and efficient sampling strategies.
Teresa GUALLART-NAVAL (Valencia, Spain) , Hui XUE , José M. ALGARÍN , Eli G CASTANON , Jesús CONEJERO , Fernando GALVE , Beatrice LENA , Chloe NAJAC , Mary A. NASSEJE , John STAIRS , Ruben B. VAN DEN BROEK , Rubén BOSCH , Lorena VEGA-CID , Andrew WEBB , Michael HANSEN , Joseba ALONSO
11:15 - 12:00 #54563 - P228 Assessment of Gadolinium-Enhanced TOF MR Angiography at Ultra-Low-Field (0.05 T): A Simulation Study.
P228 Assessment of Gadolinium-Enhanced TOF MR Angiography at Ultra-Low-Field (0.05 T): A Simulation Study.

Ultra-low-field MRI may improve access to neurovascular imaging through lower-cost and potentially portable system designs [1, 2]. However, MR angiography at ultra-low field remains challenging due to reduced signal-to-noise ratio, altered relaxation times, and limited vessel-to-background contrast [3]. Non-contrast time-of-flight (TOF) MRA [4] has shown preliminary feasibility at 50 mT [5], but vessel conspicuity remains limited. Gadolinium-based contrast agents (GBCAs) may partially compensate by shortening blood T1, yet their expected benefit for TOF-style angiography at 50 mT has not been evaluated. This study developed a path-aware TOF-MRA simulation framework to compare 3T TOF, non-contrast 50 mT TOF, and simulated GBCA-enhanced 50 mT TOF under matched slab-wise acquisition conditions.

A digital anthropomorphic phantom was created from 3T data of a healthy adult volunteer (TOF, anatomical T1-weighted). Major intracranial vessels were segmented and assigned to three vascular trees: basilar, left and right internal carotid arteries (Figure 1A). Manual root points were defined for each tree, and a root-based vascular path-length map was computed to provide distance information along each vessel (Figure 1B). Gaussian image-domain noise was added to the simulated signal volumes using condition-dependent assumed noise levels. The TOF signal was simulated using a spoiled gradient-echo model with inflow saturation. For each slab and connected vessel component, local path length was estimated as the difference between each voxel’s root-based path length and the minimum path length within that component, providing RF exposure history. Simulations used TR/TE = 20/5 ms, no slab overlap, and a fixed representative blood velocity of 50 cm/s. Slab thicknesses of 20 mm and 40 mm were evaluated to examine the effect of slab-wise RF exposure history. CNR was calculated from clean simulated vessel–tissue signal differences divided by the assumed image-domain noise standard deviation (σ = 0.004 for 3T TOF; σ = 0.100 for both 50 mT conditions). Flip angle was selected to maximize the mean vessel-to-WM/GM CNR as the primary criterion, resulting in flip angles of 25° for 3T TOF, 30° for non-contrast 50mT TOF, and 40° for contrast-enhanced 50mT TOF. The same vascular geometry and path map were used for all conditions. Tissue-specific T1, T2, and relative proton density values were assigned to WM, GM, CSF, and blood using literature-based representative values at 3T and 50mT where available [6, 7]. The GBCA-enhanced 50mT condition was modelled as an assumed peak blood T1-shortening scenario, with vessel T1 set to 250 ms, based on the expected R1 increase induced by GBCAs.

The path-length map provided a spatially resolved representation of proximal-to-distal vessel distance across the three manually rooted vascular trees. Simulated single-slice images and MIPs showed strong vessel conspicuity in the 3T TOF reference, reduced vessel-to-background visibility in non-contrast 50 mT TOF, and partial recovery with simulated GBCA enhancement at 50 mT (Figure 2). Mean vessel-to-WM/GM CNR was highest for 3T TOF, while non-contrast 50 mT TOF showed markedly reduced CNR. Simulated GBCA enhancement increased 50 mT CNR compared with non-contrast 50 mT TOF for both slab thicknesses (Figure 3). Normalized signal decreased with increasing path length within each slab, with more frequent resets in the 20 mm slab configuration and longer attenuation segments in the 40 mm configuration (Figure 4). Curves were truncated to proximal-to-mid vessel segments where the root-based path projection yielded a consistent slab-exposure history.

Non-contrast 50 mT TOF showed substantially reduced vessel-to-WM/GM CNR compared with 3T TOF. Simulated GBCA enhancement increased blood signal and partially restored vessel-to-background contrast at 50 mT, although contrast remained below the 3T reference. The path-aware analysis also reproduced the expected TOF behavior: voxels with greater slab-local path length and higher estimated RF exposure showed lower normalized signal. This supports root-based vascular path maps as a practical approximation for modelling inflow-related saturation in digital phantom simulations [8, 9]. Limitations include slab-local path approximation rather than full particle tracing or CFD-derived flow fields, simplified velocity handling using a minimum-velocity clamp, label-wise uniform tissue properties, and MIP visualization that emphasizes vascular conspicuity rather than GM/WM contrast.

Simulated GBCA enhancement improved 50 mT vessel–WM/GM CNR compared with non-contrast 50 mT TOF, increasing mean CNR from 0.65 to 1.09 for 20 mm slabs and from 0.32 to 0.84 for 40 mm slabs. Although still below the 3T reference, contrast-enhanced 50 mT TOF improved vascular conspicuity in this digital phantom model, supporting further investigation of GBCA-enhanced TOF-style MRA at ultra-low field.
Hidehiro SHIMIZU (Calgary, Canada) , Jacob BEAUDOIN , Nicole LOFROTH , Chathura KUMARAGAMAGE , Ethan MACDONALD
11:15 - 12:00 #53654 - P229 3D Wireless Temperature Monitoring During Hyperthermia Exploring Low-Field Magnetic Resonance Imaging and Coercive Nanoparticles.
P229 3D Wireless Temperature Monitoring During Hyperthermia Exploring Low-Field Magnetic Resonance Imaging and Coercive Nanoparticles.

Hyperthermia is an established therapeutic strategy for cancer treatment in the 40–44 °C temperature range, whose effectiveness critically depends on accurate and in-depth temperature monitoring [1]. Magnetic resonance imaging (MRI) enables non-invasive three-dimensional thermometry; however, conventional approaches remain limited by low temperature sensitivity and restricted integration with hyperthermia systems [2]. Low-field MRI offers improved accessibility, portability, and easier integration, but suffers from reduced signal-to-noise ratio, leading to lower temperature sensitivity [3]. Here, we propose the development of high-coercivity nanoparticles (NPs) with enhanced temperature sensitivity for low-field MRI, exploiting the fact that their coercivity can be higher than the MRI field strength. Under these conditions, the magnetic moment of the NPs can be set in the opposite direction of the MRI field [4] and undergo temperature-triggered flipping within the hyperthermia temperature range as coercivity decreases, enabling strong, localized, and highly temperature-dependent contrast for spatially resolved thermometry.

Ga-doped ε-Fe₂O₃ (ε-Ga₀.₇Fe₁.₃O₃) NPs were synthesized via a sol–gel method [5], calcined at 1100 °C, and dispersed in water to form stable ferrofluids. Structural and magnetic properties were characterized using X-ray diffraction, electron microscopy, dynamic light scattering, and vibrating sample magnetometry. Alginate-based hydrogels (30 mg/mL alginate) containing NPs were prepared and crosslinked inside a 0.5 T MRI system to fix the NPs' magnetic moment opposite to the MRI field, ensuring a well-defined and reproducible initial magnetic state. Relaxometry measurements (T₁/T₂) and 2D/3D gradient-echo MRI images were acquired under controlled heating conditions, with temperature monitored independently using an external temperature sensor placed near the sample. For laser-induced hyperthermia, indocyanine green (ICG) was incorporated (1 mg/mL), and samples were irradiated (~5 W/cm², 15 min), enabling dynamic heating conditions. Ex vivo mouse kidneys were used to evaluate performance in tissue-like environments by introducing NPs-loaded hydrogels into a cavity and imaging during laser heating to assess spatial localization and signal specificity.

Ga-doped ε-Fe₂O₃ NPs showed coercivity above 0.5 T at room temperature, decreasing near 47 °C and enabling magnetic-moment flipping within the hyperthermia range (Figure 1a,b). When embedded in alginate hydrogels and reticulated inside a 0.5 T MRI system, their magnetic orientation was fixed opposite to the MRI field. T₂ exhibited a sinusoidal angular dependence, with a maximum at 180° (opposite direction) and a minimum at 0° (same direction), resulting in strong contrast differences (Figure 1c,d). As temperature increased, this angular dependence progressively disappeared, leading to the loss of contrast differences between 0° and 180° (Figure 2) and enabling temperature-dependent spatial contrast mapping (Figure 3). Laser hyperthermia experiments with ICG reproduced this behavior under dynamic heating conditions. In ex vivo mouse kidneys, signal changes remained localized to the hydrogel region (Figure 4).

The observed temperature-dependent contrast originates from the reorientation of the NPs' magnetic moment as coercivity decreases within the hyperthermia temperature range. This mechanism provides a direct link between temperature and MRI signal, enabling clear contrast modulation with temperature in low-field conditions, while having this unique angle- and temperature-dependent feature as a fingertip that excludes other intensity-dependent features. The observed angular dependence of T₂ confirms the strong influence of the NPs’ magnetic orientation on the measured signal, while its progressive decrease with temperature reflects the magnetic-moment transition within the hyperthermia temperature range. In ex vivo mouse kidney, signal changes remained localized to the hydrogel region, indicating minimal influence from the surrounding tissue. Overall, these results support the use of Ga-doped ε-Fe₂O₃ NPs as temperature-sensitive contrast agents for low-field MRI thermometry and highlight their potential for integration into image-guided thermal therapies.

Ga-doped ε-Fe₂O₃ NPs enable temperature-dependent MRI contrast in low-field systems through magnetic-moment flipping within the hyperthermia temperature range. This mechanism produces strong, localized, and highly temperature-sensitive signal variations, enabling spatially resolved thermometry under both controlled and dynamic heating conditions. The controlled orientation of the NPs within the hydrogel enables reproducible and localized signal variations. These results demonstrate a promising strategy for 3D wireless, real-time temperature monitoring in low-field MRI, with strong potential for accurate thermometry during hyperthermia and for future integration into image-guided thermal therapies.
Gabriela F. RESENDE (Aveiro, Portugal) , João M. L. COSTA , Tehseen A. ANJUM , Vítor M. GASPAR , João F. MANO , Filipa L. SOUSA , Asuka NAMAI , Marie YOSHIKIYO , Shin-Ichi OHKOSHI , Nuno J. O. SILVA
11:15 - 12:00 #54538 - P230 Water-fat separation with MRF at low field: impact of SNR and spectral resolution on fat fraction accuracy.
P230 Water-fat separation with MRF at low field: impact of SNR and spectral resolution on fat fraction accuracy.

Compared with conventional clinical systems, low-field MRI offers reduced susceptibility artifacts(1), making it particularly relevant for muscle imaging, for example near metallic implants(2). Magnetic Resonance Fingerprinting with water-fat separation (MRF T1-FF) enables simultaneous quantification of muscle fat fraction (FF) and water T1 (T1H2O), together with fat T1, B0 and B1, and was validated at 3T to provide valuable biomarkers of tissue alterations in neuromuscular disorders(3,4). However, it is unknown how the reduced SNR and lower Frequency Shift (FS) between fat and water could affect MRF parameter estimation and water-fat separation while decreasing field strength. In this work, we investigated the impact of reduced SNR and spectral resolution associated with lower magnetic field on MRF-based biomarkers. Simulation work and in vivo validation of the MRF T1-FF sequence at 0.55 T for muscle imaging are presented.

The MRF sequence was adapted at 0.55T from the MRF T1-FF framework developed at 3T(3), by rescaling the echo times according to the magnetic field to maintain the same dephasing conditions between water and fat as the original MRF implementation (TE = [5.89, 12.47, 18.00] ms). To assess the robustness of the sequence, signal evolutions were simulated using an open-source implementation of Extended Phase Graph (EPG)(https://github.com/py-baudin/epgpy). A numerical checkerboard phantom was designed as a matrix of voxels spanning a range of T1 and FF reflecting expected muscle tissue values at 0.55T (Fig.1a,c). For SNR robustness assessment, complex Gaussian noise was added on the k-space at multiple amplitudes. The fat spectrum was represented using a six-peak model, with FS offsets scaled to 0.55T. To simulate imperfect shimming, water and fat spectral components were modeled as Lorentzian-shaped distributions (Fig.1b). Several Full Widths at Half Maximum (FWHM) were simulated. MRF singular volumes were reconstructed using an SVD on a dictionary of water and fat signals and wavelet regularization. Parametric maps were then obtained using bicomponent dictionary matching(5). For in vivo validation, data were acquired in the thighs of 5 healthy volunteers both at 0.55T (Siemens MAGNETOM Free.Max) and 3T (Siemens MAGNETOM PrismaFit). In addition to MRF T1-FF, a series of inversion recovery (IR) sequences with varying inversion times were acquired at 0.55T. Acquisition times for MRF at 3T and 0.55T were 11s and 15s per slice, respectively, compared to 10 minutes for the IR protocol. For all sequences, in-plane resolution of 1.5x1.5mm², FOV = 580x580mm² and slice thickness of 16 mm were kept constant.

Simulations showed an effect of the SNR on FF estimation compared to the ground truth, with low SNR leading to overestimation at low FF and underestimation at high FF (Fig.1d,f). Increasing FWHM of peaks in the frequency spectra to model non-ideal B0 shim conditions led to overestimation at high FF and underestimation at low FF (Fig.1e,g). At 0.55T, a SNR of 10 was calculated on in vivo singular volumes, and an upper bound for FWHM was estimated at 4Hz using literature values(7,8) for T2 and T2*. Visually, in vivo FF and T1H2O maps showed similar image quality between 0.55T and 3T (Fig. 2a). Two ROIs were manually segmented in the thigh of the 5 volunteers for all sequences: one encompassing all muscles and one encompassing all subcutaneous (s.c) fat (Fig.2b). For FF estimation, the mean value across volunteers at 0.55T was 1.1 ± 0.5% in muscle and 82.4 ± 3.0% in s.c fat (FFmuscle = 1.9 ± 0.9% and FFsub-fat= 86.0 ± 4.3% at 3T)(Fig.3). A significant linear association was found for FF in s.c fat between 0.55T and 3T (R²=0.99, p≤1e-3). For muscles, no significant association was observed (p=0.06). T1H2O was correlated between MRF and IR sequences at 0.55T (R²=0.96, p=0.004)(Fig.4). Compared to 3T, within-subject Coefficients of Variation (CV) was higher for T1H2O at 0.55T (CV0.55T =15% and CV3T =8%).

As highlighted by the simulations, contribution of typical SNR at 0.55T seems negligible for the adapted version of MRF T1-FF, however lower spectral resolution might lead to underestimation of low FF under poor shimming conditions. In vivo acquisitions confirm this, with an underestimation of FF in muscle compared to 3T. The linear association between both field strengths for low FF remains non-significant, likely due to the narrow FF range in healthy muscles. T1H2O values measured in muscle are consistent with those obtained using the IR sequence, supporting the validity of the approach. However, water-fat separation might become challenging with the current MRF sequence at lower field strengths.

We adapted MRF T1-FF at 0.55T through TEs adjustment. Simulations highlighted that changes in SNR and FS may become limiting factors for water-fat separation at low field. Future work will focus on further validating the findings of the simulation using phantom and in vivo data in fat-infiltrated regions.
Alice HELLEBOID (Paris) , Angéline NEMETH , Pierre-Yves BAUDIN , Marc LAPERT , Benjamin MARTY , Constantin SLIOUSSARENKO
Palau Sira
12:00 LUNCH BREAK & LUNCH SYMPOSIUM

"Thursday 01 October"

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B1LS
12:00 - 13:00

LUNCH SYMPOSIUM PHILIPS

Sala de Cambra
13:30

"Thursday 01 October"

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A13
13:30 - 15:00

FT2-4 - From Voxels to Clinical Impact
The Future of MRI Biomarkers

FT Clinical
13:30 - 13:50 Brain Imaging Biomarkers in Multiple Sclerosis: Today and Tomorrow. Alessandro CAGOL (PostDoc) (Keynote Speaker, Basel, Switzerland)
13:50 - 14:10 Future of Imaging Biomarkers for Kidney Function and Disease. Anna CAROLI (Medical Imaging Lab, Head) (Keynote Speaker, Bergamo, Italy, Italy)
14:10 - 14:30 Shaping the Future of Imaging Biomarkers for Cancer. James O'CONNOR (Keynote Speaker, United Kingdom)
14:30 - 15:00 Panel Discussion. Alessandro CAGOL (PostDoc) (Keynote Speaker, Basel, Switzerland), Anna CAROLI (Medical Imaging Lab, Head) (Keynote Speaker, Bergamo, Italy, Italy), James O'CONNOR (Keynote Speaker, United Kingdom)
Sala Simfònica

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B13
13:30 - 15:00

LTB1-2 Scientific session
Brain Structure and Function: Methods and Applications

13:30 - 13:33 #53508 - PG073 Complementary Value of APTw-CEST to rCBV and ADC for IDH Status Prediction in Glioma.
PG073 Complementary Value of APTw-CEST to rCBV and ADC for IDH Status Prediction in Glioma.

Non-invasive characterization of glioma molecular status, particularly isocitrate dehydrogenase (IDH) mutation, is a key goal in neuro-oncological imaging. Perfusion-derived relative cerebral blood volume (rCBV) and diffusion-derived apparent diffusion coefficient (ADC) maps are established markers of vascularity and cellularity, respectively, but do not fully capture IDH mutation status [1-3]. Amide proton transfer-weighted chemical exchange saturation transfer (APTw-CEST) imaging is thought to be sensitive to mobile proteins [4] and shows promise for glioma characterization, including IDH prediction [5-7]. While APTw-CEST has been studied alongside diffusion [8] and perfusion [9] imaging, its added value when combined with rCBV and ADC for IDH prediction remains unclear. This study evaluates the relative performance of APTw-CEST, rCBV, and ADC, and the added value of APTw-CEST in combination with these parameters, for IDH status prediction in glioma.

Twenty-two patients with suspected glioma were prospectively included. Fifteen patients (8 IDH-wildtype glioblastomas, 6 IDH-mutant astrocytomas, and 1 IDH-mutant oligodendroglioma, WHO grades 2-4) were analyzed after excluding cases with incomplete imaging or inconclusive diagnosis. MRI acquisition (3T GE scanner, 32-channel head coil) included structural imaging (T1w, post-contrast T1w, T2w, FLAIR), diffusion, perfusion, and APTw-CEST imaging. APTw-CEST was acquired using a 3D snapshot sequence [4], with B₀ correction via two-pool Lorentzian fitting as described in [10]. Fluid suppressed MTRasym maps were calculated to represent the APTw-CEST signal [11]. ADC maps were scanner-derived from two b-value (b0 and b1000) diffusion-weighted imaging acquisitions. rCBV maps were computed using in-house software (as described in [12]) from the gradient echo component of a dual gradient/spin echo sequence acquired during the second contrast bolus, including Boxerman-Schmainda-Weisskoff leakage correction [13]. Tumor segmentation was performed using an in-house pipeline (Glioseg) [14], which segments tumor compartments based on structural MRI and registers these to the respective parameter map image spaces. Histogram-derived features (mean, standard deviation, p10, p25, median, p75, p90, and IQR) were extracted from all tumor voxels. Group differences between IDH-wildtype and IDH-mutant tumors were assessed using Mann–Whitney U tests. Spearman correlation analysis was performed to assess redundancy between modalities. Exploratory logistic regression with leave-one-out cross-validation (LOOCV) was performed to evaluate combined predictive performance.

Among the evaluated histogram features, only those derived from rCBV showed significant differences between IDH groups. rCBV p90 was significantly higher in IDH-wildtype compared to IDH-mutant tumors (median 3.86 vs 1.98, p=0.009; Fig. 1). APTw-CEST features demonstrated consistently higher values in IDH-wildtype tumors but did not reach statistical significance (CEST p90: 0.226 vs 0.153, p=0.054). ADC-derived features showed substantial overlap between groups and were not statistically significant (p ≥ 0.18). Spearman analysis using the most discriminative features per parameter (lowest p-value per parameter: ADC mean, rCBV p90, CEST p90) showed weak, non-significant correlations (ρ = -0.49 to 0.36), suggesting complementary information across modalities. Representative maps and structural scans are shown in Fig. 2. In exploratory LOOCV logistic regression (Fig. 3), rCBV alone achieved an accuracy of 0.73. The combination of rCBV and APTw-CEST yielded the highest performance (0.87). ADC did not improve performance when combined with APTw-CEST or rCBV, while the three-parameter model reached an accuracy of 0.80.

This study confirms rCBV as a robust imaging marker of IDH status, reflecting increased vascularity in IDH-wildtype gliomas. APTw-CEST showed consistently higher values in IDH-wildtype tumors and improved classification when combined with rCBV, indicating complementary information. ADC did not contribute meaningfully, possibly due to tumor heterogeneity within the IDH-mutant group or the use of whole-tumor analysis. The main limitation of this study is the small sample size, which limits statistical power and increases the risk of overfitting in multivariate analyses. Therefore, the observed improvements from combined models should be interpreted as exploratory. Future work focuses on expanding the cohort and incorporating additional imaging data to improve robustness. Analysis of tumor subcompartments may better capture intratumoral heterogeneity and further exploit complementary information across modalities.

rCBV is the strongest indicator of IDH status. APTw-CEST provides complementary information and improves exploratory classification performance, while ADC adds no value in this cohort. These findings support further investigation of multiparametric MRI approaches incorporating APTw-CEST in larger cohorts.
Juancito C.c. VAN LEEUWEN (Rotterdam, The Netherlands) , Laura KEMPER , Karen N. VAN DER WERFF , Esther A.h. WARNERT , Juan A. HERNANDEZ TAMAMES , Eelke M. BOS , Sybren L.n. MAAS , Pim J. FRENCH , Stefan KLEIN , Marion SMITS
13:33 - 13:36 #54582 - PG074 Correlation of BBB-ASL Exchange Time with DCE-MRI Derived Permeability Parameters in Gliomas.
PG074 Correlation of BBB-ASL Exchange Time with DCE-MRI Derived Permeability Parameters in Gliomas.

Gliomas are the most common primary malignant brain tumors in adults. Blood–brain barrier (BBB) disruption is frequently observed in high-grade gliomas and is commonly evaluated using gadolinium-based contrast agent (GBCA) leakage on contrast-enhanced T1-weighted (T1w) MRI [1]. Dynamic contrast-enhanced (DCE) MRI is widely used to assess BBB permeability and tumor vascular properties [2]. Although IDH-wildtype gliomas often exhibit clear contrast enhancement due to increased BBB disruption, subtle permeability changes may remain undetectable due to molecular size of the GBCA [3]. Therefore, there is increasing interest in non-contrast imaging approaches for BBB assessment. Multi-TE blood–brain barrier arterial spin labeling (BBB-ASL) provides a noninvasive alternative for detecting BBB dysfunction without exogenous contrast agents [4]. Previous studies have demonstrated the feasibility of BBB-ASL-derived cerebral blood flow (CBF) and exchange time (Tex) measurements in gliomas [5] and also compared these metrics between IDH mutational subgroups in gliomas [6]. This study aims to compare BBB-ASL-derived Tex with DCE-MRI-derived Ktrans and maximum enhancement (ME) to investigate the relationship between BBB-ASL and DCE-MRI permeability metrics.

14 histopathologically confirmed glioma patients (12 IDH-wildtype glioblastomas and 2 IDH-mutant astrocytomas; M:F = 10:4; mean age = 50 ± 17.5 years) were scanned on a clinical 3T MRI (MAGNETOM Prisma, Siemens Healthineers, Erlangen, Germany) using a 32-channel head coil. Pre- and post-contrast T1w and DCE-MRI scans were acquired. A combination of single-TE and multi-TE time-encoded pseudo-continuous arterial spin labeling (pCASL) sequences was acquired using the gammastar framework [7]. The data acquisition parameters are provided in Table 1. Post-contrast T1w images underwent bias field correction using FSL FAST [8] and skull stripping using FSL BET [9]. Contrast-enhancing (CE) tumor was segmented on post-contrast T1w MRI using 3D Slicer [10]. The resulting segmentation masks were registered to the DCE and ASL spaces using SPM12 [11]. Tex was quantified on the joint Hadamard-4 and Hadamard-8 ASL data using ExploreASL [12] with the BBB-ASL model [4] implemented in FSL-FABBER [13]. Quantification was performed assuming a tissue T2 relaxation time of 116.2 ms [5] and a blood T2 of 165 ms. For semi-quantitative DCE-MRI analysis, time–intensity curves (TICs) were generated from temporal changes in signal intensity. ME was calculated as the relative signal enhancement at its maximum [14]. Quantitative DCE-MRI analysis (yielding Ktrans) was performed using the extended Tofts model [15], using a patient-specific arterial input function, and by calculating GBCA concentrations derived from T1 maps obtained using B1 corrected variable flip angle (VFA) scans [16]. First-order histogram values of Tex, Ktrans, and ME were calculated within the CE tumor regions. Spearman correlation analysis was performed to evaluate the relationships between Tex and Ktrans, and between Tex and ME.

Figure 1 shows a) post-contrast T1w MRI, b) Tex, c) Ktrans, and d) ME maps of an example IDH-wildtype glioma. In the CE tumor region, significant positive correlations were observed between Tex and DCE-derived parameters. Tex showed strong correlations with mean ME (ρ=0.74, p=0.002) (Figure 2a), median ME (ρ=0.67, p=0.008) (Figure 2b), and ME skewness (ρ=0.67, p=0.01) (Figure 2c). In the pharmacokinetic analysis, significant correlations were also found between Tex and the skewness (ρ=0.55, p=0.046) (Figure 3a) and kurtosis (ρ=0.57, p=0.035) (Figure 3b) of Ktrans. No correlation was found with the mean or median values of Ktrans.

The present study investigated the relationship between BBB-ASL-derived Tex and DCE-MRI permeability metrics in gliomas. A previous study using BBB-ASL and dynamic susceptibility contrast (DSC) MRI reported an inverse relationship between Tex and contrast agent leakage parameter K2 in CE tumor regions [5]. This study showed significant correlations between Tex and mean and median ME, and with secondary Ktrans distribution descriptive parameters (skewness, kurtosis), suggesting that Tex may reflect alterations in BBB permeability associated with tumor vascular characteristics. In particular, the strong correlations between Tex and ME metrics indicate that BBB-ASL may capture permeability related information without the need for contrast agent administration. These findings support the potential of BBB-ASL as a non-invasive alternative for assessing BBB disruption in gliomas. However, the relatively small cohort size was a limitation of this study. Further studies with larger patient populations are needed to validate the relationship between BBB-ASL and DCE-MRI-derived permeability measures.

BBB-ASL-derived Tex showed significant associations with DCE-MRI permeability metrics, supporting the potential of BBB-ASL as a non-invasive method for assessing BBB disruption in gliomas.
Gülce TURHAN (Istanbul, Turkey) , Ayse Irem CETIN , Cristina LAVINI , Beatriz E. PADRELA , Amnah MAHROO , Simon KONSTANDIN , Daniel Christopher HOINKISS , Nora-Josefin BREUTIGAM , Henk-Jan MUTSAERTS , Ayca ERSEN DANYELI , Koray OZDUMAN , Klaus EICKEL , Matthias GÜNTHER , Vera KEIL , Jan PETR , Alp DINCER , Esin OZTURK-ISIK
13:36 - 13:39 #53361 - PG075 Relationship Between MR Elastography and Perfusion MRI in Meningiomas: A Hotspot-Based Analysis.
PG075 Relationship Between MR Elastography and Perfusion MRI in Meningiomas: A Hotspot-Based Analysis.

Magnetic resonance elastography (MRE) and perfusion MRI (pMRI) offer different but potentially complementary information on tumor structure and vascularity. MRE has been used to assess meningioma stiffness before surgery [1], [2], whereas perfusion MRI provides insight into tumor blood volume and flow characteristics [3], [4]. However, it is not clear whether these imaging markers reflect related processes or capture distinct aspects of tumor behavior. Understanding this relationship may help in better interpreting these techniques in clinical practice.

This retrospective, single-center study included 26 patients with histopathologically confirmed meningiomas (18 female, 8 male). Tumor subtypes were meningothelial (n=12), fibrous (n=10), and others (n=4). The study was approved by the local institutional ethics committee (approval no. 202601Y1017). MRE-based stiffness maps were obtained using 60 Hz mechanical excitation and reconstructed with a three-dimensional inversion method [5]. Perfusion MRI was performed using a dynamic susceptibility contrast technique to generate relative cerebral blood volume (rCBV) and mean transit time (rMTT) maps. For each case, measurements were obtained from three regions defined on the same slice: a whole-tumor ROI delineated on T2-weighted and post-contrast T1-weighted images, an MRE-defined stiffness hotspot corresponding to the region of highest intratumoral shear stiffness, and a contralateral normal-appearing white matter (NAWM) ROI. Identical ROIs were applied across MRE, rCBV, and rMTT maps to ensure spatial consistency (Figure), and the extracted values were used for statistical analysis. Within-subject comparisons between local and whole-tumor measurements were performed using the Wilcoxon signed-rank test. The relationship between stiffness and perfusion metrics was evaluated using Spearman correlation analysis (α=0.05).

Hotspot-based measurements showed higher stiffness and blood volume compared with whole-tumor values. Stiffness was higher in the hotspot region in 25 of 26 patients (p<0.001), and rCBV was also significantly increased locally (p=0.023), while rMTT did not differ significantly. No significant correlation was found between stiffness and perfusion parameters. At the local level, MRE values did not correlate with either rCBV or rMTT, and similar findings were observed for whole-tumor measurements. These results were consistent after normalization to NAWM.

Hotspot-based analysis highlights focal increases in stiffness and vascularity within meningiomas; however, these parameters appear to vary independently. In contrast to prior work using perfusion CT, which suggested an inverse relationship between stiffness and transit time [6], no such coupling was observed in our pMRI-based analysis. Differences in imaging modality, ROI definition, and tumor heterogeneity may account for this discrepancy. Overall, MRE likely reflects stromal and cellular properties, whereas perfusion metrics capture microvascular characteristics [2], [4].

In meningiomas, areas of higher stiffness tend to coincide with increased blood volume, but no direct relationship is observed between stiffness and perfusion. These findings suggest that MRE and pMRI provide complementary information and should be considered as separate, rather than interchangeable, imaging markers.
Zeynep FIRAT (ISTANBUL, Turkey) , Azim CELIK , Gazanfer EKINCI
13:39 - 13:42 #53796 - PG076 Predicting Post-Acetazolamide Cerebral Blood Flow Maps from Baseline ASL MRI in Moyamoya Using 3D Generative AI: A Retrospective Cohort Study.
PG076 Predicting Post-Acetazolamide Cerebral Blood Flow Maps from Baseline ASL MRI in Moyamoya Using 3D Generative AI: A Retrospective Cohort Study.

In cerebrovascular diseases such as Moyamoya, progressive narrowing of major intracranial arteries impairs downstream cerebral blood flow (CBF). Cerebrovascular reserve (CVR) informs treatment decisions, including whether surgical revascularization may be warranted over medical management [2]. CVR can be assessed using paired arterial spin labeling (ASL) MRI scans before and after acetazolamide (ACZ) administration to the patient [1]. However, this two-acquisition, drug-challenge protocol prolongs scan time, may reduce patient comfort, cause side effects such as paresthesias of the face/extremities, and can be difficult to perform in patients with renal impairment, sulfonamide allergy history, or pregnancy. Recent generative AI methods, including encoder-decoder networks, diffusion models, and pretrained 3D foundation models, have shown promise for medical image synthesis across neuroimaging tasks [3-5]. We hypothesized that volumetric 3D generative modeling could estimate post-ACZ ASL CBF maps from baseline MRI scans while preserving regional perfusion-response patterns relevant to Moyamoya CVR evaluation.

We performed a retrospective single-center study of 251 subjects with Moyamoya disease imaged from 2020 to 2023, split into 188 training, 31 validation, and 32 held-out test cases. An additional 78 pre-surgery Moyamoya subjects acquired in 2025 were held back as a temporal out-of-distribution cohort and used only for inference-time evaluation. Volumes were affinely registered to MNI152 space, skull-stripped, and intensity-normalized to [0,1] before model training. Eleven conditional MRI synthesis models were evaluated under a unified protocol: a 3D conditional autoencoder (CAE3D), 2D and 3D convolutional baselines, 3D diffusion-based methods including DDPM_3D [6], a Fourier neural operator (FNO_3D), patch-based and hybrid 3D models, and two adapted pretrained and open-source 3D medical encoders, Med3DVLM [8] and SAM-Med3D [9]. All models used the same fixed split with three random seeds (42, 123, 456). Primary metrics used are whole-brain mean absolute error (MAE), structural similarity (SSIM), peak signal-to-noise ratio (PSNR), R², and Bland-Altman agreement [10] with bootstrap 95% confidence intervals. A ten-region vascular territory atlas of the brain [7] was used for regional delta-CBF analysis.

On the held-out test set (N=32), CAE3D achieved the best cohort-mean MAE (0.066 +/- 0.002), SSIM of 0.80 +/- 0.02, PSNR of 24.0 +/- 0.2 dB, and near-zero Bland-Altman bias (-0.006 +/- 0.036; limits of agreement, -0.093 to 0.081). FNO_3D ranked second by MAE (0.072 +/- 0.031) and tied CAE3D on PSNR. Standard DDPM_3D and Residual_3D were unstable and produced implausible regional perfusion responses. Among open-source pretrained methods, SAM-Med3D (MAE 0.083 +/- 0.001) outperformed Med3DVLM (MAE 0.098 +/- 0.003) but did not surpass CAE3D. Five-fold cross-validation across the full cohort showed consistent model rankings. On the 2025 temporal out-of-distribution cohort, deterministic models (autoencoders and convolutional-based models) retained their advantage without retraining: UNet3D achieved the best OOD MAE (0.050) and PSNR (25.8 dB), CAE3D achieved SSIM 0.874, and ResNet_3D degraded most (SSIM 0.650). Territory-level analyses showed that CAE3D tracked ground-truth mean delta-CBF more plausibly than major comparators, whereas ResNet_3D overestimated vascular response in several regions.

In this single-center retrospective cohort, volumetric synthesis of post-ACZ CBF from baseline MRI scans using generative AI models demonstrated strong image fidelity, near-zero mean-intensity bias, and plausible vascular-territory perfusion-response patterns. CAE3D matched or outperformed diffusion-style models, a Fourier neural operator, and adapted pretrained 3D medical encoders under a unified evaluation protocol. These findings suggest that simpler volumetric conditional models may remain competitive for structured ASL perfusion synthesis when training data are limited. Limitations include single-center data and possible scanner-specific effects. Healthy-control evaluation on 64 subjects with paired pre/post-ACZ ASL, performed without retraining, revealed model-specific failure modes: CAE3D showed downward bias, while foundation-adapter models (Med3DVLM, SAM-Med3D) showed implausible positive bias, suggesting that models trained or adapted only on Moyamoya may lack an explicit healthy-brain prior.

These results support the feasibility of volumetric post-ACZ CBF synthesis from baseline ASL using 3D generative AI models as a potential ACZ-sparing approach for Moyamoya CVR assessment. Multi-site prospective validation, incorporation of laterality and clinical covariates, and evaluation against treatment-planning outcomes are needed before clinical deployment.
Julia HUANG (Stanford, USA) , Moss ZHAO , Camila GONZALEZ , Rydham GOYAL , Aja ZOU , Sasha ALEXANDER , Michael MOSELEY , Gary STEINBERG
13:42 - 13:45 #54433 - PG077 Acute hyperperfusion after mild traumatic brain injury associates with acute and follow-up psychological symptom burden.
PG077 Acute hyperperfusion after mild traumatic brain injury associates with acute and follow-up psychological symptom burden.

Mild traumatic brain injury (mTBI) has heterogeneous clinical presentation and evolving neuroimaging characterization. The NINDS framework for acute TBI assessment incorporates complementary biomarkers, including neuroimaging descriptors of traumatic axonal and microvascular injury[1]. Because microvascular disruption is increasingly recognized as relevant to mTBI pathophysiology, arterial spin labeling (ASL) MRI may provide non-invasive biomarkers of cerebral blood flow (CBF) alterations[2,3]. We investigated whole-brain and regional CBF, together with cerebrovascular and structural brain-age metrics derived from ASL and structural MRI, and assessed their associations with acute and follow-up symptom burden in mTBI.

Seventy patients with mTBI were prospectively examined within 72 h post-injury and compared with seventy age- and sex-matched healthy controls: mTBI, 34.9±14.6 years, 38 women; healthy controls, 32.0±10.9 years, 40 women. MRI included T1-weighted imaging and dual-echo pseudo-continuous ASL. CBF was quantified in whole-brain gray matter (GM), white matter (WM), and selected subcortical and limbic regions with limited partial-volume effects: amygdala, hippocampus, caudate nucleus, putamen, and thalamus. Cerebrovascular and structural brain-age metrics were derived using models pretrained on independent external cohorts. Symptom burden was assessed acutely and at follow-up, 3.9±1.2 months post-injury, using the Rivermead Post-Concussion Symptoms Questionnaire, Pittsburgh Sleep Quality Index, Beck Depression Inventory, numerical rating scale for pain, and Depression Anxiety Stress Scales. Analysis of covariance and covariate-adjusted multivariate models accounted for age, sex, and education. Holm–Bonferroni correction was applied for multiple comparisons.

Compared with healthy controls, patients with mTBI showed higher baseline CBF in global GM, p=0.018, d=0.407, and WM, p<0.001, d=0.680, as well as in the hippocampus, p=0.026, d=0.521, amygdala, p=0.037, d=0.490, and caudate nucleus, p=0.037, d=0.488. Age, sex, and education were significant covariates, particularly for WM CBF, p≤0.038. Cerebrovascular brain-age metrics were lower in patients with mTBI than in healthy controls, p=0.014, d=0.470. Baseline WM CBF was associated with acute RPQ and DASS stress scores after family-wise error correction, p=0.023 and p=0.030, respectively. Baseline WM CBF also predicted DASS anxiety score at follow-up, p=0.007.

Acute mTBI was associated with elevated global and regional CBF and altered cerebrovascular brain-age metrics, supporting the relevance of perfusion-based MRI biomarkers in early mTBI characterization. The association between WM CBF and acute post-concussive and stress-related symptoms suggests that perfusion alterations may reflect clinically meaningful physiological changes. Furthermore, the prediction of follow-up anxiety from acute WM CBF indicates potential prognostic value.

ASL-derived CBF and cerebrovascular brain-age metrics may provide complementary biomarkers for acute mTBI characterization. Acute WM perfusion abnormalities may help explain early symptom burden and predict longer-term anxiety outcomes.
Yeva PRYSIAZHNIUK (Ulm / Prague, Germany) , Mathijs DIJSSELHOF , Dominik GRABETZ , Joachim STROBEL , Raffael CINTEAN , Florian GEBHARD , Kathrin SCHMID , Sebastian REILE , Luise SCHAEFER , Pia HOELSKEN , Felipa SZUESZNER , Susanne R. KERSCHER , Alberto G. VILLAGRAN ASIARES , Alexandra A. CASTRO-SILVA , Wibeke NORDHØY , Lars T. WESTLYE , Kornelia KREISER , Ambros J. BEER , Meinrad BEER , Saskia S. RUSCHE , Jan PETR , Alexander P. LIN , Borna RELJA , Inga K. KOERTE , Nico SOLLMANN
13:45 - 13:48 #54087 - PG078 Disentangling cerebral blood volume and oxygenation contributions to VASO-fMRI using biophysics-based computational modelling in synthetic 3D human cortical vascular networks.
PG078 Disentangling cerebral blood volume and oxygenation contributions to VASO-fMRI using biophysics-based computational modelling in synthetic 3D human cortical vascular networks.

Cerebral microvascular dysfunction is increasingly recognized as a primary driver of neurodegenerative diseases, such as Alzheimer’s, and ischemic stroke [1-4]. To better characterize these poorly understood dysfunctions, fMRI provides a powerful non-invasive approach for probing functional signals in the living brain. While BOLD-fMRI is the standard method for measuring cerebral hemodynamic responses, its signal reflects a complex combination of flow, volume, and oxygenation changes, often dominated by venous contributions that limit spatial specificity [5]. Vascular Space Occupancy (VASO-fMRI) offers an alternative approach by isolating changes in cerebral blood volume (ΔCBV). However, its application is limited by inherently low signal-to-noise ratio (SNR) and contrast sensitivity, complicating the interpretation of its signal origins [6,7]. To disentangle these physiological contributions, a mechanistic investigation is required. Here, we present a biophysics-based computational framework that integrates first-principles MRI simulations with a synthetic 3D human cortical vascular model [8,9]. This framework enables the independent manipulation of blood oxygenation (SO2) and ΔCBV, providing a controlled environment to evaluate the specificity, sensitivity, and signal formation mechanisms of VASO-fMRI and BOLD-fMRI.

A synthetic 3D human vascular network representing an ~1.5mm3 isotropic voxel was generated [8,10-12], incorporating a realistic hierarchy of pial vessels, penetrating arterioles, capillaries, and ascending venules (Fig.1). MRI signal formation, via time-dependent Bloch equation, was simulated at 7T using Monte Carlo biophysical modelling [9]. The model accounts for water diffusion effects, magnetic susceptibility-induced in tissue, intra- and extra-vascular signal components with respective relaxation rates, and particular pulse sequence parameters. Simulation parameters are summarized in Fig.2. To characterize BOLD and VASO contrasts, signal amplitudes at several TE’s were simulated (9 samples from 3 ms to 27 ms). For VASO, an inversion-recovery preparation was modelled with an inversion time (TI = 1.4551 s) optimized for blood nulling. To investigate signal characteristics, we independently modulated: (1) fractional ΔCBV across all vascular compartments (from baseline 0% to 30% dilation), and (2) changes in SO2 (veins SO2 from 70% to 90%; capillaries SO2 = arteries - ((arteries – veins)/2); arterial SO2 = 98% was constant). Signal specificity and sensitivity profiles were quantified for the Nulling (NC; VASO-like) and Not-Nulling (NN; BOLD-like) conditions, as well as the NC/NN ratio (isolated ΔCBV) [6,7]. Sensitivity was determined by calculating the partial derivatives of the parameter space response with respect to SO2 and ΔCBV, enabling a compartmentalized assessment of signal origins (specificity).

The 3D VAMOS framework created from human histological statistics [8,10-12] is illustrated in Fig.1. The model accurately represents the cortical angioarchitecture, including the branching hierarchy from pial vessels to the capillary bed. By independently assigning physiological parameters (i.e., SO2 and ΔCBV) to each vascular compartment, we successfully generated the parameter space response of hemodynamic states for NC- and NN-condition (Fig.3), and their ratio (i.e., NC/NN), spanning the range of simulated SO2 and ΔCBV. Fig.4.A-C summarizes the fractional contribution (specificity) and Fig.4.D-F the sensitivity of the NC-condition, NN-condition and their ratio, respectively.

The precise control of SO2 and ΔCBV allows for the isolation of individual signal contributions from the micro- and macro-vasculature, given that the biophysical model can simulate independent vascular contributions. At short echo times, the VASO-like signal is more strongly driven by CBV changes, whereas increasing TE enhance BOLD-like contributions and reduce VASO specificity. The NC-to-NN ratio does not present an “isolated CBV” contribution for all TE’s [6,7]; this effect is mostly present at short TEs. BOLD-like signals display larger sensitivities in contrast to VASO-like signals by a factor of ~5 dependent on TE. This shows the high sensitivity of BOLD-like signals to hemodynamic changes. Further, these results highlight the importance of pulse sequence parameter’s selection (e.g., TE and TI) and demonstrate the capability of the proposed biophysical model to disentangle oxygenation- and volume-related contributions to both fMRI contrasts.

By simulating a range of physiological conditions, this framework identifies the regime-dependent contributions of CBV and SO2 to the VASO- and BOLD-fMRI signals. Our results provide a mechanistic basis for interpreting VASO and BOLD contrasts, revealing specific physiological thresholds where VASO specificity degrades relative to BOLD. This work provides a controlled pathway for optimizing pulse sequences to enhance microvascular specificity in-vivo.
Mario Gilberto BÁEZ-YÁÑEZ (Utrecht, NL, The Netherlands) , Natalia PETRIDOU
13:48 - 13:51 #54717 - PG079 How Preprocessing Shapes Arousal-Related Brain-State Dynamics Estimated with LEiDA in Resting-State fMRI.
PG079 How Preprocessing Shapes Arousal-Related Brain-State Dynamics Estimated with LEiDA in Resting-State fMRI.

Resting-state fMRI dynamics are influenced by both intrinsic neural activity and fluctuations in arousal, vigilance, and physiological state [1,2]. LEiDA provides a phase-based framework for identifying recurrent whole-brain connectivity states and quantifying their occurrence, lifetime, and transitions [3]. However, arousal-related effects may be sensitive to preprocessing, since RETROICOR-based physiological correction reduces cardiac- and respiratory-phase-related variance, whereas global signal regression (GSR) removes the mean whole-brain signal and can substantially reshape resting-state correlation structure [4,5]. This work extends our recently presented ISMRM 2026 analysis of arousal-related LEiDA dynamics by explicitly comparing preprocessing-dependent effects across nuisance-regression strategies. Here, we examined whether drowsiness-related changes in LEiDA brain-state dynamics are robust across NoRicor/NoGSR, RETROICOR, and whole-brain GSR pipelines.

Multimodal resting-state data were acquired from 10 healthy adults across 18 runs (20–35 years; 6 females/4 males) on a 3T Siemens scanner. Six-minute eyes-open rsfMRI was collected using GE-EPI (TR/TE = 3000/36 ms, 2.5 mm isotropic, flip angle = 90°), together with a T1-weighted anatomical scan (Turboflash, TR/TE = 2160/3.30 ms, 0.8 mm slice thickness, flip angle = 12°). PPG, respiration, and 60-Hz eye-camera recordings were acquired simultaneously. Eye-camera data were processed with the MEYE web-app to derive binary eye-closure indices. PERCLOS [6] and Eyelid Closure Duration [7] were computed in 60-s windows and used to classify runs as awake or drowsy. rsfMRI data were parcellated into 200 cortical regions [8] and analyzed using three preprocessing pipelines: NoRicor/NoGSR, RETROICOR, and whole-brain GSR. All three pipelines regressed six rigid-body estimates and their temporal derivatives. All data were band-pass filtered between 0.01 and 0.08 Hz. LEiDA was applied to identify recurrent phase-coherence states from the leading eigenvectors of time-resolved phase-coherence matrices. The number of clusters was selected based on silhouette scores while prioritizing comparable state solutions across the three preprocessing pipelines. State probability and lifetime were compared between awake and drowsy runs using rank-based tests with FDR correction.

Arousal-related differences in LEiDA dynamics depended on preprocessing strategy (Fig. 4). In the NoRicor/NoGSR pipeline (Fig. 4A), no state showed a significant awake-drowsy difference in probability after FDR correction. However, a salience/attention-dominant state showed a significant lifetime difference (pFDR = 0.0192), with longer lifetimes in awake than drowsy runs, suggesting reduced stability of this state during drowsiness. In the RETROICOR pipeline (Fig. 4B), the lifetime effect observed for the salience/attention-dominant state was attenuated, and no probability or lifetime differences survived FDR correction. This suggests that the effect observed in the NoRicor/NoGSR pipeline may partly reflect physiological, respiration-, or cardiac-related variance. In the GSR pipeline (Fig. 4C), the LEiDA state space reorganized, and drowsy runs showed significantly longer lifetime of a visual-dorsal-attention state after FDR correction (pFDR = 0.0256). This suggests that GSR altered both the configuration and arousal-related stability of recurrent states. Overall, arousal effects were expressed more strongly in state lifetime/stability than in probability, but their spatial interpretation and statistical significance depended on preprocessing. Drowsiness was associated with reduced stability of a salience/attention-dominant state in the NoRicor/NoGSR pipeline; this effect disappeared after RETROICOR, whereas GSR revealed increased stability of a visual–dorsal-attention state.

Arousal-related differences in LEiDA dynamics were mainly observed in state lifetime, suggesting that drowsiness affects the temporal stability of recurrent brain states more than their probability of occurrence. However, these effects were preprocessing-dependent. In the NoRicor/NoGSR pipeline, drowsiness reduced the lifetime of a salience/attention-dominant state, whereas this effect disappeared after RETROICOR correction, suggesting possible sensitivity to physiological variance. After GSR, the state space was reorganized and drowsiness was instead associated with longer lifetime of a visual-dorsal attention state.

These preliminary findings show that arousal-sensitive brain-state dynamics are not preprocessing-invariant. Physiological correction and global signal regression can alter both the detection and interpretation of drowsiness-related LEiDA effects. Therefore, arousal-related dynamic connectivity analyses should be evaluated across multiple preprocessing strategies, particularly when physiological recordings are available.
Hüden NEŞE (Istanbul, Turkey) , Elif CAN , Kübra EREN , Pinar OZBAY
13:51 - 13:54 #54674 - PG080 Comparing pupil and heart rate derived regressors for modeling BOLD variance in task fMRI.
PG080 Comparing pupil and heart rate derived regressors for modeling BOLD variance in task fMRI.

Physiological signals influence fMRI BOLD via neuronal and vascular mechanisms, but standard corrections may remove meaningful attention variance. RETROICOR and RVT address cardiac/respiratory artifacts but do not model central arousal mechanisms impacting cognitive performance [1,2]. Heart rate (HR) correlates with global signal, reflecting arousal-linked cerebral blood flow [3]. Pupil diameter reflects sympathetic arousal and locus coeruleus activity, a more direct measure of attention than cardiac indices [4]. Pupil vs. HR-derived modeling in fMRI remains unexplored. Following our ESMRMB2025 registered report, we test whether pupil regressors capture attention-related BOLD variance more effectively than HR.

Data. Seven volunteers performed a block-design arithmetic task on a 3T system (GE-EPI, TR=3 s, TE=36 ms, 2.5 mm isotropic) with simultaneous PPG, ECG, respiration, and pupillometry. Pupil video was recorded with an MR-compatible eye camera (MRC Systems); pupil area was extracted using MEYE [5]. Regressors. HR was derived from PPG; HR and pupil traces were resampled to TR and z-scored. Candidate regressors were generated at eight lags (−21 to 0 s, 3-s steps). For each subject, mean |r| between each lag-shifted regressor and task-residualized BOLD was computed across gray-matter voxels. The lag maximizing the group-mean curve was selected per regressor. GLM. Three nested models were fitted in AFNI 3dDeconvolve with SPMG3 basis: (A) RETROICOR+RVT, (B) +HR, (C) +Pupil. Primary inference was ROI-based on seven regions: bilateral insula, dACC, bilateral IPS, bilateral V1. Paired t-tests across models used p<0.05 (two-tailed, df=6). Whole-brain maps are descriptive with transparent thresholding [6].

The regressors diverged most clearly in primary visual cortex (Figure 2D). +Pupil produced higher task β bilaterally than baseline or +HR (L V1: 0.74/0.73/0.80; R V1: 0.72/0.71/0.76, for A/B/C). The L V1 increase was medium-to-large (pupil-vs-baseline d=0.65, p=0.14; pupil-vs-HR d=0.76, p=0.09), present in 6/7 subjects; the R V1 effect was directionally identical (d=0.55, 6/7 subjects). HR produced no comparable β increase. A parallel finding emerged in R IPS, where pupil exceeded HR with d=0.78 (p=0.09, 6/7 subjects). HR reduced L V1 R² (p=0.04, with the same trend in R V1, p=0.07), indicating HR absorbs cardiovascular variance in V1 that is task-independent. In salience and attention regions, the two regressors performed similarly. Group-mean task β was stable across all three models (L insula: 0.64/0.63/0.60; R insula: 0.56/0.56/0.51; dACC: 0.88/0.82/0.78; L IPS: 0.63/0.63/0.62; R IPS: 0.69/0.68/0.71, for A/B/C), with no significant differences; neither regressor absorbs task-related signal in cognitive-control regions (Figure 2A,B). Both regressors also performed similarly on tSNR. +HR and +pupil produced significant tSNR gains over baseline in every ROI (Figure 2A,C; p<0.05 throughout, p<0.01 in 12/14 comparisons; Cohen's d=1.40–2.27). Pupil vs. HR ΔtSNR ranged from −0.59 (L V1, d=−0.20) to +2.37 (R insula, d=0.66), with no ROI reaching p<0.05.

The principal differential effect appeared in V1. Task β under +pupil exceeded that under baseline and +HR bilaterally, with medium-to-large effect sizes (d=0.55-0.76) consistent in 6/7 subjects. Two converging findings support an interpretation: HR significantly reduced L V1 R² while pupil did not, and +pupil increased task-significant voxel counts in L V1 while reducing them in insula and dACC. Together, these suggest that pupil-tracked arousal fluctuations partially obscure the V1 task response in conventional analyses; modeling them explicitly recovers task signal that would otherwise be misattributed to noise. The parallel R IPS effect (d=0.78) suggests this mechanism may extend beyond the primary visual cortex into dorsal attention regions. Optimal lags differed between regressors (pupil −6 s, HR −9 s), consistent with distinct peripheral-to-central transduction pathways. Selecting a single group-level lag per regressor protects against overfitting at N=7. Beyond V1, both HR and pupil functioned as effective denoising regressors with no significant difference between them. tSNR rose significantly in every ROI under both models (d>1.4), and task β remained stable in salience and attention regions, confirming neither regressor absorbs task-related signal where the arithmetic task is known to activate cortex.

HR and pupil regressors both improve fMRI tSNR substantially across attention, salience, and visual ROIs without altering task β in cognitive-control regions, confirming both as valid noise regressors. Pupil regression uniquely increases task β in V1 bilaterally (medium-to-large effect, 6/7 subjects), consistent with pupil capturing arousal-related variance that suppresses apparent V1 task responses in conventional analyses.
Şirin Yağmur ABACI (Istanbul, Turkey) , Kübra EREN , Fatmatüzzehra UÇAL , Lina ALQAM , Cem KARAKUZU , Alp DINÇER , Pınar Senay ÖZBAY
13:54 - 13:57 #54267 - PG081 Characterization of confounding factors in spin-lock based biomagnetic field detection: Quantification of T1ρ during neural activity.
PG081 Characterization of confounding factors in spin-lock based biomagnetic field detection: Quantification of T1ρ during neural activity.

Conventionally, neural activity is localized using functional MRI (fMRI) based on blood-oxygen-level-dependent (BOLD) contrast. However, BOLD provides only an indirect measure of neuronal activity, limiting both temporal resolution and specificity. Spin-lock (SL) based fMRI has emerged as a promising approach that may enable a direct detection of neural activity [1-5]. However, given the known sensitivity of T1ρ to vascular and metabolic changes associated with neural activation [6,7], variability in T1ρ represents a potential confounding factor. Consequently, SL-based fMRI methods require both optimization with respect to frequency-dependent relaxation mechanisms and further characterization for reliable interpretation of the activation results. In this work, T1ρ was quantified during both neural activation and resting state. In contrast to previous studies, the present work investigates T1ρ within a low-frequency regime relevant to SL-based fMRI.

The presented results comprise two activation experiments: a BOLD fMRI (Fig. 1) and T1ρ mapping (Fig. 2b) during SL based fMRI. The visual stimulation paradigm (Figs. 1 and 2a) consisted of a 40 s resting-state segment followed by a 40 s stimulation segment. The stimulation was applied for the entire duration of the stimulation segment. Both segments are repeated twice per measurement across three runs. After each change in stimulation pattern a 12s waiting interval was introduced. This ensured that the signal had reached baseline or a quasi steady state of the hemodynamic response (i.e., the plateau phase during continuous stimulation) at the time of T1ρ mapping. SSVEPs (steady-state visually evoked potentials) were elicited using a checkerboard alternately flickering at 14Hz. T1ρ quantification was performed using nine varying SL times tSL under the resonance condition fSL=fstim. Each SL time was repeated twice. To ensure stability in the presence of field inhomogeneities, the balanced spin-lock module (B-SL) was utilized [9]. BOLD activation maps were acquired using a TE of 30 ms with a spiral readout. All experiments were conducted on a clinical 3T MRI system (MAGNETOM Skyra, Siemens Healthineers, Erlangen, Germany) using a 20-channel head coil. The subject viewed an MRI-compatible screen through a mirror. All sequences were implemented using Pulseq [8].

Averaged across the three measurement runs, BOLD-activated voxels were identified, as indicated by the light gray region in the brain inset (see Fig. 3b). In Fig. 3a the BOLD time course averaged over the indicated ROI is depicted. The corresponding T1ρ signal decay exhibits dependence of T1ρ on neural activity as shown in Fig. 3b. Enhanced T1ρ values during stimulation compared to rest phases are evident. Since the magnitude changes of T1ρ are in the order of 10-2, only the T1ρ map acquired during rest is shown (Fig. 4a). The relative change in percent of T1ρ is illustrated in Fig. 4b, with the BOLD-activated region highlighted by the red contour. A mean relative T1ρ change of 2% was calculated across the ROI. The black regions represent voxels with negative relative changes, indicating that T1ρ values during stimulation are lower than during the resting state.

The present study successfully demonstrated T1ρ is modulated by neural activity for SL frequencies relevant for SL-based fMRI. This observation is consistent with the raise in T1ρ during neural activation, as would be expected due to increased cerebral blood volume and reduced susceptibility gradients [7]. Furthermore, Fig. 4b shows a strong spatial concordance between the BOLD-activated regions and the corresponding changes in T1ρ. Additional T1ρ alterations are observed in the prefrontal cortex consistent with previous findings [10]. A pronounced T1ρ increase is also observed in a localized posterior region. It is assumed this effect is likely attributable to the inclusion of vascular structures.

When performing SL-based fMRI, the sensitivity of T1ρ in the low frequency range to neural activity must be carefully considered, particularly at higher magnetic field strengths, where BOLD is more pronounced. However, T1ρ is influenced by multiple factors beyond neural activity, including the pH value [6] and generally dynamic processes with correlation times comparable to the inverse of the SL amplitude [7]. In future studies, a more comprehensive understanding of the magnitude of these influences may be achieved by investigating interindividual variability and systematically examining different stimulus modalities.
Luna TORRES (Würzburg, Germany) , Maximilian GRAM , Jannik STEBANI , Peter JAKOB , Petra ALBERT
13:57 - 14:00 #54451 - PG082 Whole-brain meso-vessel imaging at 3T using fast multi-echo 3D EPI with 0.35 mm isotropic resolution.
PG082 Whole-brain meso-vessel imaging at 3T using fast multi-echo 3D EPI with 0.35 mm isotropic resolution.

Understanding human neurovascular architecture at the mesoscale holds transformative potential for diagnosing neurological diseases, characterizing neurovascular coupling, and mapping aging. Whole-brain human in vivo imaging at mesoscopic (0.35 mm) isotropic resolution in under 7 min has recently been achieved using T2*-weighted MRI at 7 Tesla and above [1, 2, 3, 4]. This "meso-vein imaging" permits the detailed characterization of three distinct cortical vascular compartments: leptomeningeal, pial, and intracortical vessels [1]. While 7T provides the high signal-to-noise ratio (SNR) necessary to resolve the fine angioarchitecture, the accessibility remains limited due to scarcity of ultra-high field scanners. Translating mesoscopic imaging to widely available 3T MRI scanners represents a major opportunity for mesoscopic vessel imaging. To achieve this, however, it is critical to systematically establish the precise anatomical trade-offs and capabilities relative to 7T benchmarks. In this study, we bridge this field-strength gap by adapting 7T acquisition strategies directly to 3T MRI systems. We use longer echo times and larger readout windows to increase scan efficiency, thereby exploiting longer T2* and reduced geometric distortions compared to 7T [2]. We demonstrate the feasibility of whole-brain 0.35 mm isotropic imaging in approximately 7 minutes, mapping out the current performance boundaries and practical capabilities of mesoscopic imaging at 3 T.

We implemented a modified Skipped-CAIPI 3D EPI sequence [2] across a fleet of Siemens 3T scanners (Cima.X, Prisma, Skyra, Vida; Figure 1), acquiring 21 in vivo human scanning sessions (Figure 2). Based on a 7T protocol [1], parameters were tailored to maximize each platform's gradient capabilities. To ensure immediate translational utility and eliminate offline reconstruction, the online image reconstruction rate was strictly constrained to keep pace with data acquisition (<7 min reconstruction for a 7-min scan). The target resolution was set to 0.35 mm isotropic, with 0.43 mm isotropic permitted on lower-specification hardware. Individual runs were restricted to ~7 min, capping total session duration at ~30 min per participant. Preprocessing included head-motion correction and echo averaging. Vessel-specific analyses were evaluated against an open-access 7T reference dataset [1].

Successful mesoscopic whole-brain acquisitions were consistently achieved across all scanners (Figure 2). Direct comparison with the 7T reference revealed distinct, region-specific performance regimes for 3T mesoscopic imaging. As demonstrated by the minimum intensity projections in Figure 3, the intracortical meso-veins are successfully captured at 3T, although appear less distinct than the 7T data. This is particularly evident in the subcortex and brainstem (see Figure 2). However, the subdural surface projections in Figure 4 demonstrate that 3T image quality and structural fidelity immediately below the dura mater are remarkably robust. In these subdural surfaces, the vascular details and the configuration of dural sinuses, leptomeningeal vessels, and pial vascular networks at 3T seem comparable to the 7T data.

Our work establishes a milestone in human neuroimaging by demonstrating that whole-brain, mesoscopic-scale (0.35 mm isotropic) vascular imaging is fully viable at 3T MRI scanners. We show that 7T derived acquisitions can be translated across 3T scanners to achieve up to 0.35 mm isotropic resolution in around 7 min. Our 3T protocols provide highly accessible alternatives to 7T for clinical and research applications targeting subdural vascular morphology, such as characterizing venous lacunae with upward protrusions [5], characterizing vascular biases in fMRI [6], or diagnosing leptomeningeal venous thrombosis [7]. Does this imply 3T can now be a valid substitute for 7T whole-brain 0.35 mm meso-vessel imaging? The answer is “not yet”. 3T imaging faces limitations, such as field-strength-dependent susceptibility contrast and SNR reduction compared to 7T. These issues may be resolved through increasing scanning time, advanced image denoising, and hardware optimization. These venues will be addressed in the future. Crucially, our multi-site evaluation demonstrates that whole-brain meso-vessel imaging is now immediately achievable on both legacy and cutting-edge 3T systems, democratizing mesoscopic imaging for laboratories and research centers without access to ultra-high-field MR infrastructure.
Omer Faruk GULBAN , Aneurin James KENNERLEY , Rüdiger STIRNBERG , Elisa ZAMBONI , Saskia BOLLMANN , Renzo HUBER , Dimo IVANOV , Ciarlo ASSUNTA , Pizzuti ALESSANDRA , Maria GUIDI , Matteo MANCINI , Rainer GOEBEL , César CABALLERO-GAUDES (San Sebastian-Donostia, Spain)
14:00 - 14:03 #54700 - PG083 Towards Clinically Feasible High-Resolution Imaging of CSF Mobility: 10-Minute CSF-STREAM at 3T.
PG083 Towards Clinically Feasible High-Resolution Imaging of CSF Mobility: 10-Minute CSF-STREAM at 3T.

Imaging local CSF dynamics in humans is increasingly relevant for understanding brain fluid transport and clearance mechanisms, particularly along perivascular spaces (PVS), which are thought to serve as key pathways for fluid and waste clearance. Alterations in these pathways have been implicated in aging and neurological disorders, highlighting the need for clinically feasible methods to characterize cerebrospinal fluid (CSF) mobility in vivo. CSF-STREAM (CSF-Selective T2-prepared REadout with Acceleration and Mobility-encoding) is a non-invasive MRI technique designed to capture high-resolution CSF-mobility in humans (1). CSF-STREAM was originally developed for ultra-high-field imaging at 7 Tesla and lasted 40 minutes, thereby limiting its clinical use. Recently, we demonstrated the feasibility of further reducing acquisition time (2) and translated the technique to 3 Tesla (3); however, acquisition times remained prohibitively long (approximately 20-25 minutes) for clinical implementation. In this work, we accelerated the scan time of CSF-STREAM at 3 Tesla to just over 10 minutes using Philips’ latest dual-AI reconstruction algorithm SmartSpeed Precise. This approach aims to substantially reduce scan duration while preserving image quality and thereby sensitivity to regional CSF mobility patterns, facilitating broader clinical applicability.

Acquisition: MRI acquisitions were performed in three healthy participants (all male, age: 67±3 years old) on a 3 Tesla Philips MR7700 system equipped with a body transmit coil and a 32-channel head receive coil (Philips Healthcare, Best, The Netherlands). Each dataset consisted of a 0.45 mm isotropic resolution CSF-STREAM scan (TE/TR=475/3430ms, TSE-factor=121, 32x CS-acceleration) and a 0.7 mm isotropic CSF-STREAM scans (TE=422ms/TR=3430ms TSE-factor=121, 25x CS-acceleration) reconstructed using different strategies. Reconstruction: Philips Healthcare made available a research prototype of its proprietary deep learning reconstruction; SmartSpeed Precise. This approach was specifically developed and trained using fully volumetric 3D MRI data. The reconstruction strategy combines compressed sensing (CS) techniques (utilizing sparsity-based recovery from irregularly undersampled 3D k-space acquired with multi-channel coils) with a dual-network convolutional neural network (CNN) structure. The first network is designed to do denoising, whereas the second enhances spatial resolution and minimizes Gibbs ringing effects in the final reconstructed images. Images were reconstructed at the native acquisition resolution (0.7 mm isotropic) using (i) compressed sense, (ii) SmartSpeed AI for denoising and (iii) SmartSpeed Precise for denoising and super-resolution (0.35 mm isotropic). To assess the impact of accelerated reconstruction on image quality and sharpness, visualization of perivascular spaces (PVS) and of the recently described perivascular subarachnoid spaces (PVSAS, (4, 5)) was compared with the 0.45 mm isotropic resolution scan. Image processing was performed using the same pipeline as previously described in (1). CSF mobility map quality was assessed qualitatively to evaluate preservation of image quality and regional mobility information around PVS and PVSAS.

Figure 1 illustrates the non-motion-sensitized CSFSTREAM images from the original 0.45 mm isotropic protocol and from acquisitions performed at 0.7 mm isotropic, reconstructed using three different methods: CS reconstruction, AI-based denoising only using SmartSpeed, SmartSpeed Precise Image reconstruction to a resolution of 0.35 mm isotropic. Image quality appears to be good for all scans, increased visibility of PVS is observed throughout the SmartSpeed Precise image. The same comparison across reconstruction approaches was performed for the CSF mobility maps (Figure 2). At 0.35 mm resolution, the maps appeared sharper, with well-defined structural edges. This improved visualization was particularly noticeable in the perivascular subarachnoid space (PVSAS), as highlighted in the bottom row of Figure 2. CSF mobility maps of all three participants are illustrated in Figure 3 showing the general quality of the proposed CSF-STREAM at 0.35 mm with SmartSpeed Precise reconstruction. PVS in Volunteer 3 are highlighted in Figure 4.

In this study, we evaluated a 3D DL-based super-resolution reconstruction integrating compressed sensing, denoising, and resolution enhancement for CSF-STREAM. SmartSpeed Precise Image reconstruction significantly improved image quality while reducing acquisition time to around 10 minutes. Future work will include a quantitative assessment of CSF mobility measures. Additionally, more participants will be included.

CSF-STREAM scan time was reduced by 50% while maintaining high spatial resolution through the use of SmartSpeed Precise reconstruction. This enables high-resolution assessment of CSF dynamics within a clinically feasible 10-minute scan time.
Emiel ROEFS (Leiden, The Netherlands) , Johannes M. PEETERS , Lydiane HIRSCHLER , Ece ERCAN
14:03 - 14:06 #54581 - PG084 Deep learning-based simulation of prescribed brain atrophy for benchmarking volumetric measurement algorithms.
PG084 Deep learning-based simulation of prescribed brain atrophy for benchmarking volumetric measurement algorithms.

Brain atrophy measurements from MRI are crucial biomarkers for detecting and monitoring neurodegenerative diseases. Evaluating atrophy estimation algorithms requires longitudinal datasets with ground-truth volume changes. To provide such data, frameworks exist to simulate healthy aging and dementia trajectories: physics-based approaches that are computationally prohibitive and limited to small deformations [1], and faster deep learning alternatives [2] that target disease-trajectory plausibility rather than precisely-controlled volume changes. However, measuring true volume changes from clinical images is hindered by noise, contrast variations, or registration errors. Mainly two error sources complicate evaluation: voxel-based segmentation yields noisy trajectories over time, whereas registration-based algorithms often underestimate atrophy due to regularization or limited deformation grid resolution. To address this, we propose a deep learning model generating synthetic follow-up MRIs with pre-specified volume changes to provide a controlled benchmarking tool for atrophy quantification algorithms. We extended the framework to another neurodegenerative disease: Multiple Sclerosis (MS), that has atrophy as a key biomarker but is underrepresented in existing simulation frameworks.

Longitudinal MRI data were obtained from a sub-cohort of the RECLAIM study [3] (3D T1w scans, 180 people with MS, 11.1±3.0 longitudinal scans per patient). Automated segmentation with icobrain [4] provided masks and volumetric measurements for 47 brain structures at each timepoint. For each subject and structure, a cubic B-spline was fitted to the measured volume trajectory. This provided reliable training atrophy maps from multi-year follow-ups, suppressing measurement noise without registration-based regularization bias (cf. Figure 1). Pairwise target volume changes were computed from points on the curve at real follow-up timepoints, defining a robust and consistent reference value. Based on these target values, voxelwise atrophy maps were constructed from baseline segmentation masks using a hierarchical scheme that accounts for the nested composition of brain structures, ensuring the spatial mean over each structure's mask matches its target percentage volume change. A 3D U-Net was trained to predict a dense displacement field from a baseline T1-weighted MRI and target atrophy map (cf. Figure 2). Applying this field to the baseline scan yields a simulated follow-up MRI reflecting the target atrophy (cf. Figure 3). Training combined local normalized cross-correlation image similarity loss (between predicted and actual follow-up scan) with a differentiable volume change loss [5]. Volume change accuracy was evaluated by computing the mean absolute error (MAE) between target and achieved percentage changes using two methods: (1) warping baseline masks with the predicted displacement field, and (2) re-segmenting simulated images with icobrain [4]. The gap between these methods estimates confounding factors caused by image interpolation and tissue boundary appearance changes.

Achieved and target volume changes correlated strongly both for warped segmentation masks (ρ=0.966) and re-segmentation (ρ=0.965). Accuracy when warping baseline segmentation masks with predicted displacement fields yielded MAEs of 1.46% (whole brain [WB]), 1.01% (white matter [WM]), 1.53% (gray matter [GM]), 1.63% (cortical GM [CGM]), 1.23% (hippocampus), and 1.45% (lateral ventricles [LV]) across 94 test scans (mean across all 47 structures: 1.75%). Re-segmentation of simulated images with icobrain yielded MAEs of 1.9% (WB), 1.7% (WM), 2.2% (GM), 1.4% (CGM), 1.8% (hippocampus), 4.2% (LV), and an overall MAE of 2.26%. Errors correlated positively with atrophy magnitude (ρ=0.672).

Accuracy assessed on warped segmentation masks reflects how faithfully the displacement field deforms the anatomy. On the other hand, accuracy measured on re-segmented simulated images is more relevant for practical use. The two evaluation approaches measure fundamentally different quantities. The gap between the two is small for cortical regions, large for the ventricles, where the displacement field correctly deformed the ventricular mask but appearance changes were insufficient for icobrain to register the full volume change. The appropriate operating range for a given benchmarking task is constrained by the scaling relationship between errors and atrophy magnitude.

We presented a deep learning framework for simulating brain atrophy in MRI with pre-specified regional volume changes, grounded in smoothed longitudinal trajectories as a reference standard. The method can be applied to any neurodegenerative disease where longitudinal volumetric segmentation data are available. By generating synthetic MRI datasets with known volume changes, this framework directly supports the development and validation of atrophy quantification algorithms.
Mona IRSFELD (Leuven, Belgium) , James READ-TANNOCK , Thanh Vân PHAN , Simon VAN EYNDHOVEN , Diana M. SIMA , Ingrid MEŇKYOVÁ , Jan KRÁSENSKÝ , Dana HORÁKOVÁ , Manuela VANĚČKOVÁ , Dirk SMEETS , Thibo BILLIET , Jan SIJBERS
14:06 - 14:09 #54671 - PG085 Norms for Automatic Estimation of White Matter Lesions Using LST-AI.
PG085 Norms for Automatic Estimation of White Matter Lesions Using LST-AI.

White matter lesions (WML) are a key biomarker of neurodegeneration and a hallmark of vascular pathology. Although deep learning (DL) tools such as LST-AI have enhanced lesion detection sensitivity, the current absence of normative reference standards for WML volumes continues to limit their clinical application.

Separate normative datasets were constructed for 3D FLAIR acquisitions (n = 895 cognitively normal (CN) subjects from the ADNI, PPMI, NIFD, EDSD, and OASIS cohorts) and 2D FLAIR acquisitions (n = 788 CN from EDSD, ARWIBO, and OASIS). WML were segmented using LST-AI [1] and normalised to total intracranial volume. Percentile reference curves were derived using Generalized Additive Models for Location, Scale and Shape (GAMLSS) with a Johnson's SU distribution, with age and sex as covariates. External validation was performed on independent cohorts: NACC (n = 280) for 3D norms validation and MCSA (n = 178) for 2D validation. NACC was stratified into CN, mild cognitive impairment (MCI), and Alzheimer Dementia (AD) groups, while MCSA into CN, MCI and Dementia (DM).

According to either norm, WML burden increased with age. In the validation cohorts, a progressive increase in WML volumes was also observed in MCI and AD for NACC, and in MCI and DM subjects for MCSA. The 3D model showed excellent fit, with good performance in discriminating normal subjects with minimal WML using the 95th percentile as the cut-off value (sensitivity: 75%; specificity: 100%). Similarly, the 2D model showed high sensitivity (100%) and specificity (99%) at the 99th percentile.

The progressive increase in WML across the Dementia spectrum supports the hypothesis that lesion accumulation reflects neurodegenerative mechanisms beyond age-related vascular changes. This is accurately tracked by LST-AI in both 2D and 3D FLAIR scans.

This study provides reliable normative data for WML quantification using LST-AI across 2D and 3D FLAIR MRI imaging. Both the WML segmentation pipeline and the norms developed in this work are publicly available on the neuGRID2 platform (www.neugrid2.eu) [2], enabling neuroscientists and clinicians to conduct stratification and monitoring studies or single case analyses in neurodegenerative patients more effectively.
Alberto BOCCALI (Brescia, Italy) , Silvia DE FRANCESCO , Cesare Michele BARONIO , Andra ROMAN , Claudio DEMARIA , Claudio CREMA , Damiano ARCHETTI , Alberto REDOLFI
14:09 - 14:12 #54493 - PG086 Saxs-derived myelin content estimation from mri using a bayesian generative framework.
PG086 Saxs-derived myelin content estimation from mri using a bayesian generative framework.

Small angle X-ray scattering (SAXS) has been recently shown as a specific, quantitative measure of myelin content in human brain tissue, also tomographically. These measurements have revealed robust correlations between myelin-sensitive MRI and SAXS-derived myelin content [1], [2], [3]. However, systematically translating such specimen information to different settings remains challenging because of limited access to synchrotrons and ex-vivo brain tissue. Therefore, we propose a generative Bayesian model that translates the microstructural information to wider, single-modality MRI spaces. The framework extracts the joint probability distribution of coregistered SAXS/MRI datasets to perform statistical inference while quantifying the predictive uncertainty linked to each estimation. The model evaluates the predictive power of diffusion-MRI derived axonal water fraction (AWF) [3], [4] and FLAIR for myelin content estimation on unfixed human brain tissue. We investigate how the model yields different posterior distributions adapted to the two MRI contrasts.

We trained the model using high resolution ex-vivo MRI acquisitions (7T Bruker Biospec) of human multiple sclerosis fixed brain tissue, coregistered to SAXS data of the same sample acquired at the DESY synchrotron (Hamburg, Germany). Our proposed framework models the per-voxel joint distribution of the SAXS and MRI data (Fig 1). The model assumes the presence of K microstructurally distinct clusters in the tissue, exhibiting different relationships between MRI and SAXS, assumed linear in this work. A prior is defined on the cluster-wise model parameters (slopes and intercepts), with hyperparameters empirically estimated using Gaussian Mixture Models (GMM) fitting. The prior is combined with a Gaussian likelihood function to produce a posterior distribution of the SAXS given the MRI. The resulting marginalized posterior is then applied to unseen AWF and FLAIR data to estimate the voxel-wise expected values (E[SAXS|MRI]) and the predictive uncertainty (SD[SAXS|MRI]). We applied and evaluated the predictive model to the MRI of a healthy control unfixed brain slice acquired on a 3T Siemens PRISMA scanner.

Fig 2 illustrates the 2D joint distributions p(AWF,SAXS) and p(FLAIR,SAXS) with training data super-imposed. AWF exhibited a generally direct relationship with SAXS, FLAIR a more diffuse inverse relationship. The number of clusters (Fig 2) altered the joint distributions, moving from a linear model for K=1 to more complex shapes fitting patterns in the data. This was reflected in the posterior standard deviation estimates, shown for AWF in Fig 3A-C (right column): for K=1, SD[SAXS] was almost constant in MR intensity, consistent with a linear predictor. However, for K=3 and 5, it correlated with intensity, consistent with multiple distinct linear relationships broadening the outcome space by diverging for higher values. Comparing the MRI-based predictions, E[SAXS] maps (Fig 4) calculated on FLAIR showed a compressed dynamic range and systematically underestimated myelin content. Additionally, the posterior standard deviation (SD) was lower for every model of AWF compared to the respective FLAIR counterpart (Fig 3E and 4E).

AWF achieved greater precision in predicting myelin content, aided by the fact it directly measures restricted water associated with axonal and myelin structures [3]. FLAIR reflects non-specific relaxation properties, leading to greater uncertainty in the estimation as seen in Fig 3F and 4. However, FLAIR sensitivity may offer complementary predictive value in pathological scenarios, such as mapping severe demyelination or lesions with edema, which were inherently absent in the healthy control data used during the model testing [5]. Combining the two measurements, as well as more myelin-sensitive MR contrasts, for a joint prediction will therefore be considered in future modeling. Furthermore, despite the inclusion of gray matter voxels in the analysis (see very low SAXS values in Fig. 2), the Bayesian framework showed robustness: rather than biasing the global predictions, the K>1 cluster models handled the outliers by assigning them to a distinct cluster. Our results highlight the potential of such a multi-modal approach: as indicated by the contours in Fig 2, distinct microstructural clusters create multiple probability peaks. Incorporating multi-modal MRI inputs may enable a cluster choice reducing the effective posterior to a single peak, and thus more precise predictions.

We demonstrate a Bayesian generative framework trained on coregistered SAXS and MRI data capable of propagating localized multimodal microstructural relationships to unseen, single-modality MRI data. By providing uncertainty estimates on top of myelin content predictions, this modeling approach can provide a mechanism for translating physical metrics to wider, more accessible MRI spaces.
Luca ZAMPIERI (Graz, Austria) , Jonathan Scharff NIELSEN , Anna CAPPONI , Selma SEJDIC , Michaela Tanja HAINDL , Magdalena Edith HAUSER , Marlene LEONI , Raphael GASSNER , Clemens DIWOKY , Stefan ROPELE , Conceicao ANDRE , Johannes HAYBAECK , Marios GEORGIADIS , Christoph BIRKL , Anna BIRKL-TOEGLHOFER , Christian LANGKAMMER
14:12 - 14:15 #54490 - PG087 Reliability of Subcortical Shape Measures from Ultra–Low-Field MRI.
PG087 Reliability of Subcortical Shape Measures from Ultra–Low-Field MRI.

Ultra–low-field (ULF) MRI systems offer a promising pathway to increase access to neuroimaging in clinical and population neuroscience, but their adoption is limited by uncertainty regarding the reliability and cross-field comparability of derived neuroanatomical measures. Recent work has demonstrated moderate to good reliability and concordance of ULF volumetric measures both within ULF MRI and relative to high-field MRI (Vasa et al., 2025). Subcortical morphometric features such as regional shape and thickness are widely used in studies of development, aging, and neurodegeneration, yet their robustness in ULF MRI remains insufficiently assessed. Here, we evaluate the test–retest reliability and cross-field concordance of subcortical shape and thickness measures derived from high-field (3T) and ULF (0.064T) MRI, and assess the impact of harmonized versus conventional segmentation pipelines.

Two test–retest datasets were analyzed. First, a high-field (3T) test–retest dataset from the Amsterdam Open MRI Collection (AOMIC; n=927) was used to establish upper-bound reliability. Second, a paired high-field/ULF dataset from King’s College London (KCL; n=23, aged 20–69 years) included one 3T scan and two repeat ULF (0.064T) scans acquired on two identical ULF systems (one on the same day and one within 36 days). The KCL dataset included both T1 weighted(w) and T2w ULF acquisitions. All high-field T1-weighted images from AOMIC were processed using FreeSurfer recon-all (v6.0). High-field T1w images and all available ULF T1w and T2w images from the KCL dataset were additionally processed using SynthSeg-WMH. Resulting segmentation masks were analyzed using the ENIGMA-Shape pipeline to extract vertex-wise log-Jacobian (LogJac) and thickness measures for seven bilateral subcortical structures: thalamus, caudate, putamen, pallidum, hippocampus, amygdala, and nucleus accumbens. Reliability and agreement were assessed at each vertex using intraclass correlation coefficients (ICC) a two-way mixed-effects model for absolute agreement for three comparisons: high-field test–retest (AOMIC), ULF T1w test–retest (between identical ULF systems), and paired high-field/ULF comparisons. Cross-field comparisons were performed using both FreeSurfer- and SynthSeg-WMH-derived high-field segmentations. Vertex-wise ICC values were summarized within each structure using the median.

For subcortical shape (LogJac) measures, high-field test–retest reliability ranged from fair to good, with median ICCs across structures between 0.38 and 0.76 (Figure 1.B). The left nucleus accumbens showed the lowest reliability, while the thalamus showed the highest. Test–retest reliability across the two ULF systems was comparable, with median ICCs ranging from 0.41 to 0.71, lowest in the pallidum and highest in the right hippocampus. In paired high-field/lULF comparisons, concordance was consistently higher when high-field data were segmented using the SynthSeg-WMH pipeline rather than FreeSurfer recon-all. Across ULF acquisitions, similar levels of agreement were observed between ULF and high-field T1w scans regardless of modality, with median ICC ranges of 0.39–0.70 for the first ULF T1w scan, 0.41–0.68 for the second ULF T1w scan, and 0.39–0.70 for the ULF T2w scan (Figure 1.C). This is despite ULF T2w producing much higher ICC for volumetric measurements in these regions. Thickness measures followed similar trends (Figure 1.B-C). High-field test–retest ICC medians ranged from 0.38 to 0.75, while ULF test–retest ranged from 0.37 to 0.63. As with shape metrics (LogJac), ULF to high-field agreement was higher when both were processed through the SynthSeg-WMH pipeline compared to FreeSurfer-based high-field segmentations.

Subcortical shape and thickness measures derived from ULF MRI demonstrate predominantly moderate reliability, approaching high-field test–retest performance for several structures. Test-retest ICC estimates from the ULF dataset, however, should be compared to the high-field cautiously given the smaller sample size and reduced between-subject variability. Correspondence to high-field is improved when using harmonized, learning-based segmentation pipelines rather than traditional high-field–optimized workflows. Putamen, hippocampal and thalamic shape measures showed consistently higher spatial reliability and concordance to high-field, while smaller ventral striatal and pallidal regions exhibited lower concordance, indicating structure-specific sensitivity. Utilizing T2w segmentations instead of T1w did not greatly improve the results, despite what is seen within volumetric measurements. These findings support the feasibility of ULF MRI for select subcortical morphometric analyses and underscore the importance of pipeline choice for reliable cross-field neuroanatomical phenotyping in scalable and accessible neuroimaging studies.
Aram SALEHI , Tavia EVANS (Nijmegen, The Netherlands)
14:15 - 15:00 Visit posters PG073-PG087.
Sala de Cambra

"Thursday 01 October"

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C13
13:30 - 15:00

MDR
The EU MDR in Practice: Planning Your First – or Next – Clinical Investigation

13:30 - 13:45 Introduction and Update on the EU MDR. Christoph BOESCH (Prof.emeritus) (Speaker, Thun, Switzerland)
13:45 - 13:55 The Current Revision of the EU-MDR and Article 82. Mark LADD (Division Head) (Speaker, Heidelberg, Germany)
13:55 - 14:05 Declaration of Conformity (CE Marking) for Small and Medium Sized Manufacturers. Florian ODOJ
14:05 - 14:55 Interactive Q&A on EU-MDR.
14:55 - 15:00 Wrap-up. Christoph BOESCH (Prof.emeritus) (Speaker, Thun, Switzerland)
Sala Petita

"Thursday 01 October"

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D13
13:30 - 15:00

LTD1-2 Scientific session
From Abdomen to Heart and Lungs

13:30 - 13:33 #54708 - PG123 Non-invasive determination of bile acid composition in gallbladder using ultra-high field MR Spectroscopy (MRS).
PG123 Non-invasive determination of bile acid composition in gallbladder using ultra-high field MR Spectroscopy (MRS).

Cholestasis is caused by toxic bile in liver leading to inflammation and fibrosis. Liver cholestasis accounts for approximately 10% of all liver transplantations. [1] The main composition of the gallbladder are bile acids which are synthesized in the liver and play an important role in fat metabolism, emulsification, digestion, and lipid absorption. [1] Improved diagnostic methods for bile and/or bile acid composition will provide deeper insights into cholestatic disease progression and treatment efficacy. Bile acids have previously been measured at 3T. [2,3] However, the spectral resolution at 3T is limited allowing only few bile acids to be unambitiously assigned and quantified. Only one study has reported gallbladder MRS at 7T. [4] Therefore, the goal of this project is to establish single voxel MRS methods at ultra-high-field to determine bile acids non-invasively and demonstrate improved spectral resolution compared with 3T. This abstract is the second stage of a registered report submitted to the ESMRMB congress last year.

Measurements were performed on a 7T MR scanner (Terra, Siemens) using a multi-channel pTX body coil (Tesla Dynamics). Preparation study: Reference measurements of taurocholic acid (TCA), glycodeoxycholic acid (GDCA), 1,2-dihexanoyl-sn-glycero-3-phosphocholine (DHPC), and bile aspirates were performed at 7T using a STEAM sequence with TE=20ms. These spectra were used as reference data for subsequent in vivo bile spectroscopy. Protocol optimization: Due to limited RF transmit amplitude (TRx), a STEAM sequence was used despite its stronger chemical shift artifact (CSA) compared with semi-LASER sequences. To ensure full spectral coverage, upfield and downfield spectral regions were acquired separately. B1 shimming [5] was applied to reduce signal dropout within the spectroscopy voxel and in regions sampled by chemically shifted resonances due to CSA. B0 shimming was performed with FASTESTMAP to improve spectral resolution. Subject measurements: In vivo single voxel MRS measurements were performed in 4 healthy volunteers (Fig. 2). Subjects were scanned in prone position to reduce motion artifacts. A STEAM sequence was used with TR/TE=3000/5.85 ms, 5000Hz bandwidth, 128 averages, and a 10x10x10 mm3 voxel size. Spectral analysis: Spectra were analyzed using jMRUI. Data were zero-filled to 8192 points, apodized with 2 Hz line broadening, and frequency-aligned to the –N⁺(CH₃)₃ signal of choline-containing phospholipids at 3.22 ppm. After excluding individually acquired spectra with poor-quality, the remaining spectra were summed. Prior knowledge and soft constraints were applied for spectral fitting using AMARES [6].

a) Preparation Study TCA, GDCA, and DHPC are representative components of bile. Their characteristic spectral peaks (Fig. 1) can be clearly identified in bile aspirate samples, serving as markers for bile composition analysis and enabling peak assignment. Furthermore, these ex vivo bile acid spectra were used as references for in vivo MRS. b) Protocol optimization The RF profile (Fig. 2) was determined by measuring the water signal while shifting the RF excitation frequency from −5 to +5 ppm relative to water frequency in 1 ppm steps. After B1 shimming, the RF profile became symmetric, showing more uniform excitation across chemical shifts and demonstrating the importance of B1 shimming for 7T body-coil MR. B1 shimming in the gallbladder region substantially reduced signal voids, enabling clear gallbladder visualization at 7T. c) 3T / 7T MRS comparison The in vivo 7T spectrum (Fig. 3) provided higher resolution compared to previously acquired 3T spectra of the gallbladder, allowing clearer peak separation and identification, particularly for the prominent peaks observed at 7.8-8.1 ppm and in the region 3.0-4.5 ppm. d) Analysis of in vivo Spectra Fig. 4 displays 27 distinct peaks from metabolites in human bile, demonstrating effective spectral separation. The measured spectrum (green line) was fitted (red line) using previously reported bile ¹H MRS chemical shifts and ex vivo bile acid spectra. [7] Most human bile is conjugated with glycine and/or taurine, leading to distinct amide proton (-NH) signals in the downfield region (7.8–8.1 ppm). Three peaks could be separated in this region, reflecting the capability of ultra-high field MRS to distinguish subtle spectral features.

After protocol optimization and exclusion of intrinsic hardware limitations, the acquisition of high-resolution bile spectra at ultra-high-field MRI was enabled. The downfield –NH region was clearly resolved, with three distinct peaks identified. Compared with 3T, the 7T bile spectra demonstrated improved spectral resolution, highlighting the potential of this method for further investigations.

In vivo 7T MRS provides improved resolution for bile acid detection in the gallbladder. These initial results support the feasibility of the approach and provide foundation for future clinical studies in patients with cholestasis.
Yue ZHANG (Bern, Switzerland) , Dino KRÖLL , Guido STIRNIMANN , Deborah KEOGH-STROKA , Reiner WIEST , Peter VERMATHEN
13:33 - 13:36 #54501 - PG124 Single point Dixon for fat suppression in free breathing 3D isotropic resolution T1-weighted liver imaging at 0.55 T.
PG124 Single point Dixon for fat suppression in free breathing 3D isotropic resolution T1-weighted liver imaging at 0.55 T.

Low-field MRI offers a promising route toward improved accessibility [1]. In abdominal MRI, accurate handling of the fat signal, whether through suppression or quantification, is of major clinical importance [2-4]. At low field strengths, reduced signal-to-noise ratio and altered tissue relaxation properties complicate traditional fat suppression approaches, while the reduced spectral separation between water and fat limits frequency-selective fat suppression approaches and imposes restrictive echo-time requirements for conventional multi-echo Dixon methods. Robust and time-efficient fat suppression in conventional T1-weighted liver imaging at low field remains therefore challenging. Additionally, robust free-breathing isotropic resolution acquisition is desirable for patient comfort, reproducibility and diagnostic quality. To address this, we extend a single-point Dixon algorithm [5], originally developed for ultrashort echo time (UTE) imaging, to free-breathing 3D isotropic resolution T1-weighted liver imaging at 0.55 T.

Single-point Dixon imaging at low field Due to the chemical shift, water and fat can be distinguished based on their accumulated phase differences. However, additional phase contributions—such as those arising from B0 inhomogeneity, B1 effects, and gradient delays, with B0 inhomogeneity being the dominant factor—can obscure the water–fat phase difference, rendering phase-based separation of water and fat not reliable. At low field strengths (in our case 0.55 T) and short enough echo times (2 – 3 ms for conventional T1-weighted liver imaging), B0-induced phases can be assumed to vary smoothly across the field of view (FOV). With the additional assumption that other non chemical-shift-induced phase terms vary also spatially smooth, the previously proposed single point Dixon technique estimated the water, the fat, and the background phase simultaneously by solving the phase smoothness-constrained non-linear inverse water-fat problem as shown in Figure 1 [5]. In our case of conventional T1-weighted imaging, to improve the stability of the optimization problem, a mask with dominant fat signal was created based on magnitude thresholding and used as an additional constraint. Furthermore, constant phase offset was estimated from the histogram of the image phase and removed before solving the optimization problem. All the inputs to the single-point Dixon algorithm are shown in Figure 2. Data acquisition and image reconstruction Four healthy volunteers were scanned on a 0.55T MRI system (MAGNETOM Free.Max, Siemens Healthineers, Forchheim, Germany) using a free-breathing 3D radial spoiled gradient echo sequence (1.4mm3; TR/TE: 6.4/2.7ms; FA: 17o; acquisition time 8:47 min; 3D phyllotaxis trajectory [6] with 15 segments and 7524 shots; 12-ch body+9-ch spine coil). Data were motion-corrected and reconstructed with the focused navigator algorithm (fNAV) and the Free Running Framework [7, 8]. For comparison, a two-point Dixon breath-hold acquisition was also acquired (resolution 1.7 x 1.7 x 6 mm3, TR/TE1/TE2: 9.74/2.71/6.47 ms, FA: 20o).

Figure 3 shows the fat-water separation images as well as the estimated background phase maps from a volunteer. The estimated background phase varied smoothly across the field of view (FOV), as expected. The subcutaneous fat surrounding the abdomen, the intermuscular adipose tissue (IMAT) in the back muscles in the sagittal view, the visceral fat, and the bone marrow fat in the spine were successfully separated. Figure 4 compares the water–fat separation results obtained using the proposed single-point Dixon method and the two-point Dixon approach across three subjects. Despite differences in signal-to-noise ratio and minor slice misalignment arising from variations in acquisition and respiratory motion handling, the single-point Dixon algorithm demonstrated water–fat separation performance comparable to that of the two-point Dixon approach.

The results demonstrate that the proposed single-point Dixon approach enables feasible and robust water–fat separation in a free-breathing, isotropic-resolution T1-weighted acquisition at 0.55 T. However, this preliminary study included only four healthy volunteers, and further validation in a larger cohort is required. In particular, pathological conditions such as hepatic steatosis and focal liver lesions remain to be investigated to assess the clinical applicability and diagnostic performance of the method.

Combined with a novel free-breathing 3D isotropic acquisition and reconstruction framework, the proposed single-point Dixon approach provides a simplified, time-efficient, and motion-robust solution for T1-weighted imaging at 0.55 T.
Anh T. VAN (Lausanne, Switzerland) , Ilaria BROVEDANI , Marco MUELLER , Christopher W. ROY , Jean-Baptiste LEDOUX , Yutong LUO , Clarisse DROMAIN , Naik VIETTI VIOLI , Ruud B. VAN HEESWIJK , Yerly JEROME , Dimitrios C. KARAMPINOS , Matthias STUBER
13:36 - 13:39 #54511 - PG125 Boundary-Preserving Bayesian IVIM Mapping for Robust Lesion-Level Assessment in Crohn's Disease.
PG125 Boundary-Preserving Bayesian IVIM Mapping for Robust Lesion-Level Assessment in Crohn's Disease.

Intravoxel incoherent motion (IVIM) is of growing interest in Crohn's disease (CD) because it provides quantitative diffusion- and perfusion-related parameters that may help distinguish inflammatory from fibrotic bowel lesions (1). However, conventional IVIM parameter estimation is still commonly performed using least-squares fitting (LSQ), which is highly sensitive to noise and often produces unstable parametric maps, particularly for perfusion fraction f (2). In addition, quantitative analysis often requires time-consuming manual lesion delineation. This issue is amplified in bowel DWI, where bowel motion, respiratory motion, partial-volume effects, and limited signal-to-noise ratio further degrade parameter estimation (3). Bayesian spatial regularization may improve IVIM robustness, but conventional neighborhood-based priors can be limited at tissue interfaces, where local smoothing may blur anatomical boundaries (4). Here, we evaluated whether boundary-preserving Bayesian IVIM estimation improves parametric map stability and lesion-level associations with expert radiological severity scores compared with LSQ.

This retrospective study included 30 patients with confirmed or suspected CD who underwent abdominal diffusion-weighted imaging (SE-EPI) on a 1.5T MRI scanner (MAGNETOM Avanto Fit, Siemens Healthineers) with 10 b-values (0,10,40,80,110,200,250,350,500,800 s/mm^2). CD lesions were automatically segmented using an in-house deep learning model based on nnU-Net, pre-trained on multi-contrast MRI data from 458 patients. An expert radiologist assigned a segmental Nancy inflammation score (0-6) and a visual analog scale (VAS) fibrosis score (0-10) for each affected bowel segment. IVIM parameters (perfusion fraction f, diffusion coefficient D, pseudo-diffusion coefficient D*) were estimated using three methods: (1) voxelwise least-squares fitting (LSQ); (2) Bayesian estimation with a hierarchical Gaussian prior (BSP) and (3) an edge-weighted Bayesian method (Edge-W) incorporating a Gaussian Markov random field (GMRF) spatial prior, shown in Eq.1, where θi denotes the IVIM parameter vector at voxel i, θi=(fi,Di,Di*), i~j indicates neighboring voxels, κ controls the regularization strength, and wij were derived from the b=0 image intensity gradients to preserve anatomical boundaries. For all Bayesian methods, posterior sampling was performed using a preconditioned Crank-Nicolson (pCN) MCMC scheme, as described in (5), combined with checkerboard Gibbs updating for Edge-W. Non-rigid motion correction was applied prior to fitting, by registering all b-value images to the b=0 reference image with local cross-correlation as the similarity metric.

Representative maps showed reduced voxel-wise dispersion after Bayesian estimation, particularly for perfusion fraction f (Figure 1). The Bayesian methods substantially reduced intra-lesion variability of the perfusion fraction f compared with LSQ (Figure 3B): median coefficient of variation (CV) decreased from 54% (LSQ) to 32% (BSP) and 28.0% (Edge-W) (both p<10^-5, Wilcoxon signed-rank test). Bayesian estimation also strengthened the lesion-level association between f and expert radiological scores (Figures 2A and 2B). The Spearman correlation between f and VAS fibrosis score increased from ρ=-0.61 with LSQ to ρ=-0.73 with BSP and ρ=-0.75 with Edge-W, all p<0.001 (Figure 2A). For the Nancy inflammation score, the association increased from a non-significant correlation with LSQ, ρ=-0.33,p=0.071, to ρ=-0.45,p=0.011 for BSP and ρ=-0.48,p=0.006 for Edge-W (Figure 2B). In contrast, the diffusion coefficient D showed only weak, non-significant associations with both VAS fibrosis and Nancy inflammation scores. When patients were grouped according to fibrosis severity, f progressively decreased from no fibrosis, VAS ≤ 1, to moderate fibrosis, VAS 2-5, and severe fibrosis, VAS > 5 (Figure 3A). Significant between-group differences were observed in exploratory pairwise comparisons, including no fibrosis vs severe fibrosis, p<0.001, no fibrosis vs moderate fibrosis, p=0.045, and moderate vs severe fibrosis, p=0.015.

Boundary-preserving Bayesian IVIM estimation substantially reduced intra-lesion variability of the perfusion fraction f and strengthened its association with expert radiological severity scores in CD. Compared with conventional LSQ fitting, the Edge-W approach provided the lowest perfusion-fraction variability, suggesting that anatomical edge-weighting can improve IVIM stability while limiting excessive smoothing across tissue boundaries. These findings support Bayesian IVIM regularization as a robust approach for lesion-level quantitative assessment in CD, with f emerging as the most informative IVIM-derived marker in this cohort.

Boundary-preserving Bayesian IVIM estimation improved perfusion-fraction stability and strengthened lesion-level associations with radiological severity in Crohn's disease, supporting f as the most informative IVIM-derived marker in this setting.
Antoine KNEIB (Nancy) , Mbaimou Auxence NGREMMADJI , Bénédicte CARON , Gabriela HOSSU , Valérie LAURENT , Freddy ODILLE
13:39 - 13:42 #54505 - PG126 Feasibility of Dynamic Deuterium Metabolic Imaging of the Portal Vein at 7T for Monitoring Human Gastrointestinal Glucose Metabolism.
PG126 Feasibility of Dynamic Deuterium Metabolic Imaging of the Portal Vein at 7T for Monitoring Human Gastrointestinal Glucose Metabolism.

The portal vein is the main venous outflow from the bowel and offers a unique anatomical site for assessing gastrointestinal (GI) metabolic changes before hepatic clearance. This may provide biomarkers for early diagnosis of GI diseases like mesenteric ischemia (MI), in which impaired intestinal perfusion leads to lactate production through anaerobic glycolysis [1]. However, access to portal venous blood requires invasive and technically challenging venipuncture, making it is unsuitable for clinical application [2]. Deuterium metabolic imaging (DMI), in combination with oral administration of deuterium (2H) labelled glucose, offers a promising non-invasive alternative for monitoring glucose metabolism in vivo [3], but its application in the portal vein has not yet been explored. Challenges arise due to the small size of the portal vein relative to voxel size, signal ghosting from the stomach, and respiratory motion, which complicates signal localization and can cause phase and frequency distortions [4]. In addition, blood flow may influence the signal through inflow of unsaturated spins into the imaging volume [5]. Considering these challenges, this study aims to demonstrates the feasibility of dynamic DMI in the portal vein at 7T.

Six healthy volunteers underwent overnight fasting prior to the scan. Dynamic 3D DMI data were acquired on a 7T Philips Achieva MR scanner (Philips Healthcare, Best, The Netherlands) with integrated 2H-transmit bore coil, using an established DMI protocol [6]. After a baseline DMI scan, subjects orally ingested 20 g [6,6’-²H₂]glucose (2H-Glc) dissolved in 100 ml water, while lying still in the scanner, followed by 12-13 DMI scans over time (110-120 minutes). A semi-automatic pipeline was developed to process DMI data (Matlab R2024b, MathWorks, USA). Data pre-processing involved PCA-denoising, and zero- and first-order phase corrections. The pipeline then facilitated volume of interest (VOI) selection, spectral fitting, and metabolite quantification. VOI selection was based on spectral-temporal correlation with an automatically identified reference voxel, based on characteristic spectral properties and anatomical location. Spectral fitting of 2H-Glc was performed using the Advanced Method for Accurate, Robust, and Efficient Spectral fitting (AMARES) algorithm [7]. To assess ghosting of stomach signal, 2H-Glc outside the body was fitted and averaged. Quantification of 2H-Glc involved normalization of the fitted amplitudes to the baseline HDO signal per voxel and using naturally abundant HDO as an internal concentration reference (12.1 mM) [8]. Correction factors were applied for partial saturation, and number of 2H atoms per molecule. Influence of blood flow on partial saturation of flowing spins was modelled discretely using a Bloch solver adapted for one-dimensional flow [9], and assuming a portal vein flow velocity of 40 cm/s as worst-case estimate [10].

Spectra associated with the portal vein showed distinct spectral and temporal characteristics compared to surrounding tissues (Fig. 1). After administration, the 2H-Glc signal in the stomach declined smoothly over time, while the portal vein signal rapidly increased (exceeding HDO), fluctuated over time, and disappeared within 2 hours, in contrast to the liver signal, which increased slower (not exceeding HDO), and remained detectable at the end of the measurement. 2H-Lactate signal was not detected. For VOI selection, the spectral-temporal correlation method distinguished voxels with portal vein-specific signal from the surrounding tissues, thereby capturing most of the relevant signal (Fig. 2,3). VOI averaged time-concentrations curves (Fig. 4) showed considerable inter-individual variability in 2H-Glc time course and peak concentrations (9-33 mM). Estimated stomach ghosting contributed minimally to the portal vein signal, with mean contamination below 3.9%. Simulations showed minimal differences in partial saturation (∆M_z/M_0 < 2.5%) between flowing and static 2H-Glc spins.

The observed 2H-Glc concentrations in the portal vein were higher than typical systemic postprandial levels (6.7-7.8 mM [11]), but are physiologically plausible given the pre-hepatic measurement site. The pronounced inter-individual variability in time courses might be explained by differences in intestinal glucose uptake dynamics and gastric emptying. The absence of 2H-lactate signal in healthy subjects may facilitate discrimination of MI patients in which elevated lactate levels are expected.

This study demonstrated the feasibility of dynamic DMI in the portal vein at 7T for assessing in vivo 2H-Glc dynamics, confirming minimal effects of flow and signal ghosting. This is a promising step toward non-invasive assessment of GI metabolism and early detection of diseases such as MI.
Alette TIJBURG (Enschede, The Netherlands) , Maaike KONIG , Li Shen HO , Wybe VAN DER KEMP , Dennis KLOMP , Wyger BRINK , Robert GEELKERKEN , Jeanine PROMPERS
13:42 - 13:45 #53491 - PG127 MR observation of body composition and metabolism related to bariatric treatment of obesity.
PG127 MR observation of body composition and metabolism related to bariatric treatment of obesity.

Markedly increasing prevalence of obesity and its related complications represents one of the most important challenges of the current medicine. In contrast to the pharmacological approach, bariatric surgery is a very efficacious treatment with long durability in reducing body weight and improving metabolic complications of obesity. Usually, body mass index (BMI) is generally used to describe body overweight although it considers only height and weight. The pathological consequence of obesity, however, lies in the damage of the organs rather than higher weight itself. It is known, that MR can objectively determine and quantify fat content noninvasively in various areas of interest. In this study we evaluated surgical outcomes and MR changes not only in the subcutaneous and visceral adipose tissue, but also in the liver, both in terms of its volume and liver steatosis, in a prospective cohort of patients undergoing one-anastomosis gastric bypass (OAGB), with a focus on the first postoperative year.

The cohort of 29 patients scheduled for bariatric surgery (aged 24–61 years; 23f/6m; BMI 34.4–56.5 kg/m²) underwent clinical examination, abdominal ultrasound (US) and MR both before and one year after laparoscopic OAGB treatment. MR and US examinations were conducted on the same day, following a fasting period of at least six hours. None of subject had suffered from other diseases that could affect the MR results. Liver biopsies were performed during surgery in 26 patients. One year after surgery, needle biopsies were obtained from 13 patients. All procedures were approved by the local ethics committee and conducted in accordance with the Declaration of Helsinki. Written informed consent was obtained from all participants prior to the examinations. MR examinations were performed on a 3T system Vida (Siemens Healthineers, Germany) equipped with a 30-channel surface and spine coil in the supine position during held expiration. The examination protocol lasted around 40 minutes and included: 1) liver steatosis and volume determination: Standard Siemens LiverLab [1] protocol containing proton density fat fraction measurement using T1 VIBE e- and q-Dixon sequences (PDFF) and automatic MRS sequence HISTO (FF; STEAM sequence: TR = 3000 ms, TEs = 12, 24, 36, 48, 72 ms, voxel size 40×30×25 mm) were used. Region of interest (ROI) in the liver segments V/VIII was hold in the same position over the sequences and examinations. Liver volume was calculated from the automatic segmentation routine from e-Dixon images on a console. PDFF values were obtained from the whole liver volume PDFFwhole and selected ROI (PDFFROI); similarly, values of FFHISTO in the ROI were obtained from HISTO protocol and subsequently hepatic fat content (HFC) calculation was done [2]. Liver fat volume was obtained by multiplying HFC by the corresponding liver volume. 2) abdominal fat content calculation: transversal T2-weighted HASTE sequence with 3.5 mm slice thickness (TR/TE = 1800/91 ms, base resolution = 512) was applied in the abdominal area at the level of the third lumbar vertebra. Segmentation was done using ITK-SNAP software and areas of subcutaneous and visceral adipose tissue, muscles and the rest regions were manually selected and calculated (Figure 1). Histopathology was considered the reference method for measuring liver steatosis in this study. A semiquantitative scale was used to describe the extent of the affected hepatocytes. Data were categorized using the histological scoring system [3] based on the four steatosis grades (0-3); NAFLD activity score (NAS) was also calculated.

The values of selected parameters before and after surgery are summarized in Table 1. In general, only two of 20 patients with initial morbid obesity (BMI > 40) remained at BMI > 35 one year after the treatment; 6 patients reached healthy weight (BMI < 25). On average, BMI diminished by 33%, but the largest changes (around 80%) were observed in liver fat content (across all MR-derived variables) independently on BMI. Histological parameters supported these findings. Liver volume decreased by almost half a liter and subcutaneous and visceral fat areas diminished by more than 50%.

The range of both, pre- as post-operative values was rather broad and reflected various BMI. Intraindividual differences before and after the treatment were highly significant especially in both visceral and subcutaneous adipose tissue. However, liver fat fraction together with liver volume (and their changes) do not directly depend on the abdominal adipose tissue. All MR techniques showed consistent results.

Bariatric surgery not only results in weight loss, but also significantly affects the metabolism of organs. MR can be a useful tool in the noninvasive monitoring of changes in body composition and metabolism related to obesity and its surgical treatment, and in early detection of possible risks of sarcopenic obesity or malnutrition. The study was supported by MH CR DRO – IKEM, IN 00023001.
Monika DEZORTOVA (Prague, Czech Republic) , Petr SEDIVY , Dita PAJUELO , Petr KORDAC , Filip DOLECEK , Milan HAJEK
13:45 - 13:48 #54219 - PG128 Acute effects of monosaccharides alongside fat on hepatic fat content in obese and non-obese individuals.
PG128 Acute effects of monosaccharides alongside fat on hepatic fat content in obese and non-obese individuals.

Metabolic dysfunction-associated steatotic liver disease (MASLD, formerly NAFLD) characterized by an excessive fat accumulation in the liver represents a growing global health concern. Although its pathogenesis is multifactorial, dietary factors, particularly the consumption of fructose, has been implicated in disease development and progression. In our previous study [1], co-administration of fructose with a high-fat load led to rapid hepatic fat accumulation in non-obese individuals within 6 hours, whereas glucose did not affect hepatic fat content (HFC). The present study aimed to determine whether this effect is preserved in obese subjects and to assess the metabolic response to sucrose in both non-obese and obese groups.

Fifteen obese and eleven non-obese subjects were included in the study. The basic characteristics of both groups is presented in Table 1. The participants underwent three interventions in randomized order (fat + glucose, fat + fructose, fat + sucrose). After overnight fasting, baseline HFC (HFC0) was measured by MR spectroscopy (MRS). Then, subjects consumed 150 g of fat with 50 g of either glucose, fructose, or sucrose. Fifty g of the same sugar was administered to subjects again at 2 and 4 hours. After 6 hours, HFC was re-assessed by MRS (HFC6). Blood samples were collected repeatedly to determine triacylglycerols (TAG), free fatty acids (FFA), glucose, insulin, uric acid (UA), alanine amino transferase (ALT), and γ-glutamyl transferase (GGT). All procedures were approved by the local ethics committee and conducted in accordance with the Declaration of Helsinki. Written informed consent was obtained from all participants prior to the examinations. The MR examination was performed in the supine position during held exhalation at 3T MR system VIDA (Siemens, Germany) equipped with 30-channel surface coil and 32-channel spine coil. The examination protocol included transversal T2-weighted HASTE sequence with 3.5 mm slice thickness (TR/TE = 1800/91 ms, base resolution = 512) and single voxel spectroscopy sequence (STEAM sequence, TR = 4500 ms, TEs = 20-33-50-68-80-100-135-150-180-270 ms, 2 acquisitions, with and without water suppression). The position of the volume of interest (VOI, 40×30×25 mm) was placed in the liver segment V/VIII in the area without visible big vessels. Automatic and manual shimming were combined to reach a linewidth <45 Hz. MR spectra were evaluated by LCModel [2] and the concentrations were corrected for T2 relaxation times in each subject using MATLAB software. HFC was calculated from fat fraction using Longo correction [3]. Relative content of saturated fat fraction in the VOI was estimated from fractions of hydrogen atoms of functional groups [4]. Paired t-test was used for the comparison between measurements at time 0 and after 6 hours. 2way ANOVA was used for the comparison of relative HFC differences between both groups.

In non-obese subjects, HFC significantly increased after the high fat load with fructose (HFC6/HFC0 = 113 ± 14 %, p = 0.007), while remained unchanged in interventions with glucose and sucrose. In obese subjects, HFC decreased after high fat load with glucose (HFC6/HFC0 = 94 ± 8 %, p = 0.01), but remained unchanged in interventions with fructose or sucrose. The relative proportions of hydrogen atom fractions in unsaturated bonds (fUI, fPUI) decreased significantly in non-obese individuals in the fructose experiment (88 ± 13 %, p = 0.01; 84 ± 21 %, p = 0.03, respectively) and remained unchanged in obese individuals. Insulin secretion was concisely higher in obese group, whereas glycemic responses were comparable between groups. TAG and FFA responses did not differ among interventions/groups. UA, ALT and GGT slightly, but significantly increased in interventions with fructose compared to interventions with glucose or sucrose.

We confirmed that high fat load with high amount of fructose led to a significant acute increase in HFC during 6 hours in non-obese subjects (Figure 1). The similar effect, but less pronounced, was observed in obese subjects. Based on the analysis of biochemical data, it is likely that this increase is driven by fructose-mediated de novo lipogenesis. Moreover, biochemistry results show that even acute exposure to high amount of fructose imposes a measurable burden on liver metabolism. In the obese group, glucose paradoxically decreased HFC, whereas HFC remained unchanged after fructose or sucrose. The decrease in the relative proportion of unsaturated fatty acids is consistent with the fact that only saturated fatty acids contribute to the increase in HFC.

High fat load with fructose, not glucose or sucrose, induces an acute increase in HFC in non-obese subjects. Glucose prevented hepatic fat accumulation in both non-obese and obese groups. High fat load with sucrose had no effect on HFC six hours after its administration.
Dita PAJUELO (Prague, Czech Republic) , Petr KORDAČ , Ivana LAŇKOVÁ , Štěpánka FRANKOVÁ , Petra ŠŤASTNÁ , Monika DEZORTOVÁ , Milan HÁJEK , Petr ŠEDIVÝ , Jan KOVÁŘ
13:48 - 13:51 #54170 - PG129 A Web-Based Tool for Automatic Abdominal Fat Quantification and Longitudinal Assessment in MRI.
PG129 A Web-Based Tool for Automatic Abdominal Fat Quantification and Longitudinal Assessment in MRI.

Polycystic ovary syndrome (PCOS) is an endocrine-metabolic disorder associated with altered fat distribution and increased cardiometabolic risk. In particular, visceral adipose tissue (VAT) accumulation has been linked to insulin resistance and metabolic dysfunction, making abdominal fat quantification a relevant imaging biomarker for treatment monitoring and metabolic assessment [1]. Magnetic Ressonace Imagin (MRI) allows non-invasive characterization of visceral and subcutaneous adipose tissue (SAT) without ionizing radiation, making it well suited for longitudinal multicenter studies. However, abdominal fat quantification still largely relies on manual or semi-automatic segmentation approaches, which are time-consuming, operator-dependent, and difficult to apply in large clinical cohorts. Within the multicenter SPIOMET4HEALTH project [2,3], abdominal MRI examinations were acquired at baseline, 12-month and 18-month follow-up visits in women with PCOS. Expert-reviewed segmentations were used as reference dataset for model training and validation. We propose a deep learning-based framework for automatic VAT and SAT segmentation and biomarker quantification from MRI, integrated into an interactive web-based application for longitudinal visualization, quantitative analysis, and clinical assessment.

Abdominal MRI examinations from the SPIOMET4HEALTH multicenter study were retrospectively analyzed, including T1-weighted, T2-weighted, and Dixon-based [4] acquisitions from seven European centers. A single axial slice at the L3–L4 level was selected per examination for adipose tissue analysis [5]. Reference VAT and SAT segmentations were generated via a semi-automatic pipeline and reviewed by an expert radiologist. Automatic segmentation was performed using 2D U-Net architectures with pretrained EfficientNetB0, ResNet50, and DenseNet121 encoders [7-9], and ensemble models were evaluated to improve robustness across acquisition protocols [10]. Quantitative biomarkers (VAT area, SAT area, and maximum SAT thickness) were automatically extracted from the segmentation masks and integrated into a web-based application enabling visualization, longitudinal comparison, biomarker quantification, and PDF report generation. The application was containerized using Docker for reproducible deployment.

The proposed framework achieved accurate abdominal fat segmentation across the multicenter dataset. Individual U-Net models showed consistently high SAT segmentation performance, with Dice scores of 0.93. VAT segmentation was more challenging and showed greater variability. Ensemble models improved VAT segmentation compared with individual architectures, achieving VAT Dice scores up to 0.83 while maintaining SAT Dice values around 0.95. Robust performance was preserved across heterogeneous multicenter acquisitions, with VAT and SAT Dice scores of 0.826 and 0.941, respectively. Representative outputs generated by the web application are shown in Figure 1, including automatic VAT/SAT segmentation, overlay visualization, biomarker extraction, and longitudinal comparison across study timepoints. The platform also enabled export of quantitative results and automatically generated PDF reports within a protected hospital-network environment.

The proposed framework combines automatic abdominal fat segmentation, quantitative biomarker extraction, and longitudinal visualization within a single platform. Ensemble models improved robustness across heterogeneous MRI acquisitions, particularly for VAT segmentation, which remained more challenging than SAT due to greater anatomical and acquisition variability. An important feature of the application is the possibility of simultaneously analyzing examinations acquired at different study timepoints, facilitating longitudinal assessment and direct comparison of biomarker evolution during treatment follow-up within the SPIOMET4HEALTH study. The generated segmentations and biomarkers were validated using expert-reviewed annotations provided by the reference radiology team at Hospital Sant Joan de Déu, the coordinating center of the project. Nevertheless, segmentation performance remained influenced by acquisition quality, protocol variability, and accurate slice selection at the L3–L4 level.

A deep learning-based framework for automatic abdominal fat quantification from MRI was developed and integrated into a web-based application. The proposed approach achieved high SAT segmentation performance and robust VAT quantification across heterogeneous multicenter acquisitions. The integration of automatic segmentation, biomarker extraction, longitudinal comparison, and report generation within a single platform supports the translational potential of the proposed framework for clinical research workflows. Future work will focus on further optimization of the segmentation models and extension of automatic fat quantification to additional anatomical regions and volumetric MRI analyses.
Violeta PEREZ (Barcelona, Spain) , Julia ROMAGOSA , Christian STEPHAN-OTTO , Arnau VALLS-ESTEVE , Enrique LADERA , Lourdes IBANEZ , Christian MATA
13:51 - 13:54 #54487 - PG130 Meal-induced changes of proton density fat fraction and T2* in human supraclavicular adipose tissue.
PG130 Meal-induced changes of proton density fat fraction and T2* in human supraclavicular adipose tissue.

Brown adipose tissue (BAT) located within supraclavicular adipose tissue (scAT) contributes to human energy expenditure and can be activated by cold exposure or meal intake. [1-3] While positron emission tomography studies demonstrated postprandial BAT activation, MRI provides a radiation-free alternative for repeated measurements in healthy cohorts. [4,5] Chemical shift-encoding-based MRI enables simultaneous quantification of proton density fat fraction (PDFF) and T2*, which are linked to BAT composition and activation. [5] Cold activation studies frequently reported decreases in scAT PDFF, [4-6] whereas T2* findings have been inconsistent due to technical challenges related to motion and B0 fluctuations in the neck region. [4,7,8] However, MRI studies investigating dynamic PDFF and T2* changes during meal-induced BAT activation remain limited. Therefore, this study investigated meal-induced PDFF and T2* dynamics in human scAT using a motion-robust radial stack-of-stars (SoS) acquisition with automated processing and image analysis.

Ten healthy volunteers (5 female, 5 male) underwent two visits consisting of a fasting control experiment and a meal intervention experiment (see Fig. 1(a)). During the meal intervention, volunteers consumed either a protein-rich (P) or non-protein-rich (nP) iso-caloric meal. Multi-echo gradient-echo acquisitions with a radial SoS trajectory, golden angle spoke ordering [9] and an isotropic resolution of 2 mm3 were repeatedly acquired before and after intervention to dynamically quantify PDFF and T2*. Important scan parameters included TE1 = 1.27 ms, ∆TE = 0.9 ms, nTE = 6, TR = 6.7 ms and α = 3◦. The processing pipeline (see Fig. 1(b)) employed radial spoke alignment [10,11], iterative regularized reconstruction and graph-cut-based water-fat separation [12] accounting for a multi-peak fat spectrum [13] and single R2* decay [14]. An automated neural-network-based segmentation algorithm [15,16] was used to define scAT, subcutaneous adipose tissue (SAT), and muscle regions of interest (ROIs). Dynamic changes were referenced to baseline measurements and analyzed using ROI averages and the area under the curve (AUC) from 40 minutes to the end to take into account initial increases of PDFF and T2* of unclear physiological origin.

Representative PDFF (a) and T2* (b) maps with difference maps and histograms are displayed in Fig. 2. The average over all volunteers in the top row of Fig. 3(a) shows that following meal intervention, scAT PDFF continuously decreased, reaching approximately −1.5 %PDFF at 60 min, whereas fasting control experiments showed only small decreases comparable to SAT. Muscle PDFF remained stable. scAT T2* in the bottom row of Fig. 3(a) showed a pronounced decrease after meal intervention, reaching approximately −3.2 ms at 65 min, while no substantial decrease was observed during fasting control or in reference tissues. Analysis of the AUC–40 in Fig. 3(b) demonstrated predominantly negative PDFFAUC−40 and T2*AUC−40 values in scAT after meal intervention. Both PDFFAUC–40 and T2*AUC–40 of scAT were significantly different from SAT and muscle after the meal intervention. Protein-rich meals induced stronger decreases in both PDFF and T2* compared to non-protein-rich meals (see Fig. 4).

This study demonstrates that meal intake induces measurable decreases in both PDFF and T2* in human scAT. By including fasting control experiments, meal-induced changes could be separated from fasting-related effects also observed in SAT similar to previous cold-activation studies. [4,17] While PDFF decreased in both scAT and SAT similar to previously reported results, [17] the stronger decrease in scAT after meal intervention suggests additional BAT-related metabolic activity. In contrast, T2* changes were largely specific to scAT and absent in reference tissues, indicating that T2* may serve as a more sensitive biomarker for postprandial BAT activation. Protein-rich meals induced stronger PDFF and T2* decreases than other meal compositions, suggesting enhanced BAT activation.

These findings demonstrate the feasibility of robust dynamic scAT characterization using motion-robust radial SoS acquisitions and support further investigation of postprandial BAT physiology in larger cohorts.
Johannes RASPE (Munich, Germany) , Tianxing DU , Mingming WU , Jonathan STELTER , Martin KLINGENSPOR , Daniela JUNKER , Thomas SKURK , Dimitrios C. KARAMPINOS
13:54 - 13:57 #54141 - PG131 Which is Better Methods for Nodule Detection on PET Examination among MRI with Ultra-Short TE (UTE-MRI), STIR Imaging and CT with and without Breath-Holding?
PG131 Which is Better Methods for Nodule Detection on PET Examination among MRI with Ultra-Short TE (UTE-MRI), STIR Imaging and CT with and without Breath-Holding?

FDG-PET/CT currently plays a major role in ensuring accurate clinical classification of disease stages and significantly influences therapeutic decisions in oncologic patients (1-4). Although PET/MRI also offers diagnostic advantages over PET/CT for certain kinds of malignancies, including prostate cancer, bone metastasis or thoracic malignancies (4-8), a major drawback of PET/MRI is the difficulty in lung MR imaging as compared with CT, which is mainly attributable to the low proton density in the lung, in addition to respiratory and cardiac motions in the thorax. Since 2016, MR imaging with ultra-short TE (UTE-MRI) or zero echo time have been suggested as useful for lung nodule detection and characterization (9-12). The purpose of this study was to enhance nodule detection capability on PET Examination among UTE-MRI , STIR imaging and CTs with and without breath-holding in oncologic patients.

110 consecutive oncologic patients underwent standard-dose thin-section CTs, FDG-PET/CTs, FDG-PET/MRI with UTE-MRI and STIR fast advanced spin-echo (FASE) imaging. In each patient, low-dose CT with breath-holding (BHCT) was obtained as a part of PET/CT examination, which included low-dose CT without breath-holding (non-BHCT) as CT-based attenuation corrections for PET/CT. Then, two board-certified chest radiologists confirmed 548 nodules in 110 patients according to standard-dose thin-section CT findings. In each patient, probability of presence at each pulmonary nodule was assessed 5-point visual scoring system. To determine the interobserver agreement on each method, kappa statistics with χ2 test was performed. To compare nodule detection capability, Jackknife alternative free-response receiver operating characteristic (JAFROC) analysis were performed among all methods. Then, sensitivity was also compared among four methods by McNemar’s test. Moreover, false-positive per case (FP/case) rate was compared among all methods by Wilcoxon’s signed rank test.

Representative case is shown in Figure 1. Interobserver agreement of each method was determined as substantial (0.72≤κ≤0.79, p<0.0001). Comparison of Figure-of-merits (FOMs), sensitivity and FP/case among all methods are shown in Figure 3. FOM of UTE-MRI (FOM=0.98) and STIR imaging (FOM=0.98) were significantly higher than that of non-BHCT (FOM=0.89, p<0.05). FP/case rates of UTE-MRI (0.10/case) and STIR imaging (0.09/case) were significantly lower than that of non-BHCT (0.36/case, p<0.05) and BHCT (0.35/case, p<0.05).

PET/MRI has superior potential for nodule detection in oncologic patients as compared with PET/CT with and without breath-hold CT.
Yoshiyuki OZAWA , Daisuke TAKENAKA , Takeshi YOSHIKAWA , Masao YUI , Kota AOYAGI , Takahiro UEDA , Masahiko NOMURA , Masahiro ENDO , Yoshiharu OHNO (Toyoake, Japan)
13:57 - 14:00 #54618 - PG132 Exploring the cross-vendor generalizability of physics-driven VQ-Wave for reliable contrast agent-free functional lung MRI.
PG132 Exploring the cross-vendor generalizability of physics-driven VQ-Wave for reliable contrast agent-free functional lung MRI.

VQ-Wave [1] is a recently introduced physics-driven neural network, designed to estimate pulmonary ventilation and perfusion based on the acquisition of time-resolved noncontrast-enhanced 2D MR images. Conventional approaches to extract ventilation and perfusion metrics rely on a spectral analysis of the acquired time-resolved data, such as the TrueLung pipeline [2], which employs a matrix-pencil (MP) decomposition [3]. VQ-Wave and MP decomposition have previously been compared based on data acquired at a 1.5 Tesla Siemens MR system [1]. The performed analyses revealed significant overlap in the ventilation and perfusion defect maps predicted with VQ-Wave and MP, with high Dice scores, and indicated improved robustness of VQ-Wave in case of shortened time series [1]. In this preliminary study, we evaluate the generalization ability of VQ-Wave to data acquired at a 1.5 Tesla GE MR scanner.

MR data analysis was performed for one cystic fibrosis (CF) patient (male, age: 17.9 years) after obtaining written informed consent. The data were acquired on a 1.5 Tesla MR system (SIGNA Artist, GE Healthcare) within a clinical routine MR lung examination. A time-resolved series of 2D images with a frame rate of about 3-4 images/second was collected in free tidal breathing by using a short-TR bSSFP sequence and sequentially acquiring multiple slices to cover the whole lung [2]. The acquired data, consisting of six coronal slices with 150 temporal frames each, were truncated using reduction factors ranging from 0.3 to 1.0 (full series) and processed using the TrueLung pipeline [2]. The pipeline was run 10 times for each reduction factor providing a k-fold bootstrapping-like data set to assess robustness. For each run, the starting frame of the time series was shifted by one. The co-registered time series of the TrueLung pipeline for each reduction factor and each run was subsequently processed with VQ-Wave to enable a direct comparison between the two methods. The scaling of the VQ-Wave ventilation and perfusion maps was adjusted to match the output of the TrueLung pipeline. Ground truth images for assessing the performance of the truncated time series were generated based on the average of 15 runs applied to the full time series with circular shifts of one temporal frame for each run. A schematic describing the workflow without k-fold repetition can be found in Figure 1. Voxels were classified slice-wise as defect if their amplitudes were smaller than 0.7 times the median amplitude. The defect maps obtained with the truncated time series were compared to the ones generated from the full time series via Dice scores. Further, in order to evaluate signal stability when reducing the number of temporal frames, the mean ventilation and perfusion amplitudes in the lungs were calculated for each reduction factor and normalized to the mean amplitudes of the full time series.

We were able to successfully generate ventilation (Fig. 2) and perfusion (Fig. 3) maps for either method. In agreement with the findings of Bauman et al. [1], some of the perfusion maps generated by TrueLung with MP decomposition suffered from noise amplification for certain reduction factors (Fig. 3), while VQ-Wave demonstrated improved robustness for perfusion quantification. The results of the quantitative analysis are shown in Figure 4. The defect maps generated with VQ-Wave for truncated time series yielded higher Dice scores with respect to the full series than the ones generated by the TrueLung pipeline. Furthermore, the mean normalized ventilation and perfusion amplitudes of VQ-Wave were more robust to a reduction of the time frames than the ones obtained with TrueLung. The improvement was particularly evident for the perfusion amplitude.

The observed noise amplification of MP decomposition for truncated time series and the robustness of the mean ventilation and perfusion amplitudes of VQ-Wave agree with previous findings [1]. The clearly higher Dice scores of VQ-Wave as compared to MP indicate a potential use of VQ-Wave for future data acceleration based on shorter time series. However, considering the reduction in Dice scores for higher reduction factors, the optimal length of the acquired time series to accommodate not only acquisition speed and patient comfort, but also accuracy and robustness of the functional metrics of interest requires careful future investigations. With regard to these promising preliminary findings, we aim to conduct a comprehensive investigation of VQ-Wave versus MP in a larger clinical cohort in the future, potentially also including retraining of VQ-Wave.

We have demonstrated the cross-vendor generalization ability of VQ-Wave and its potential for accelerated noncontrast-enhanced functional lung MRI. While the results are promising, further investigations in larger clinical cohorts will be required to draw more general conclusions.
Damian MANETSCH (Zürich, Switzerland) , Grzegorz BAUMAN , Alexander MOELLER , Christian KELLENBERGER , Heule RAHEL
14:00 - 14:03 #54390 - PG133 Whole Lung MT MRI in Volunteers and Patients at 0.55T using bSTAR.
PG133 Whole Lung MT MRI in Volunteers and Patients at 0.55T using bSTAR.

Magnetization transfer (MT) contrast was discovered by Wolff and Balaban [1], and is most commonly created by pulsed off-resonance irradiation [2]. Clinical applications of MT contrast exist for the brain [3], the heart [4], the muscle [5], and the liver [5]. However, the use of MT contrast in the lung has not been broadly adopted in clinical workflows. A first study of human lung MT MRI was conducted by Kuzo et al in 1995 [6]. A single-slice gradient echo sequence was used on a 0.1T MRI scanner in healthy volunteers and patients, with acquisition times of 12.8 minutes. A recent study demonstrated that high-resolution free-breathing whole lung MT MRI at 0.55T with bSTAR [7] is feasible for healthy volunteers and patients with pulmonary diseases with acquisition times of under 10 minutes [8]. MT contrast with bSTAR is achieved by RF pulse prolongation [9]. In this work we report on the application of MT-sensitized bSTAR for lung MT MRI at 0.55T in patients and healthy volunteers to study its potential as a biomarker to reveal various lung pathologies. Moreover, we discuss a possible age dependency of MT contrast in the lung.

MT lung MRI was performed on a commercial whole-body 0.55T system (MAGNETOM Free.Max, Siemens Healthineers) with a 6-channel chest array coil and a 6-channel spine coil. This study included 42 patients and 6 healthy volunteers. Based on disease types, the patients were divided into groups (patients without known lung disease, T2-high asthma patients, pulmonary fibrosis patients, and a range of additional pulmonary disease entities). The study was approved by the local Ethics Committee and written informed consent was obtained from all subjects. RF pulse prolongation was used to create the MT-weighting [9], as shown in Figure 1. For MT-weighted images an RF pulse with a 100 µs duration was employed; TE=0.08/1.70 ms; TR=1.86 ms; TA=3:06 min, while for non-MT-weighted images a prolonged RF pulse of 1500 µs was used; TE=0.78/2.40 ms; TR=3.26 ms; TA=5:26 min. Further sequence parameters were FOV=340x340x340 mm³; isotropic image resolution of 1.9 mm; bandwidth=1235 Hz/Px; 100000 spokes, grouped into 500 interleaves; flip angle=30°. The registration of the non-MT-weighted and the MT-weighted scans used an adaptive graph diffusion regularization [10]. The magnetization transfer ratio (MTR) maps were calculated voxel-wise by the following ratio [3]: MTR = (SI_{non-MT} – SI_{MT}) / SI_{non-MT}, where SI_{non-MT} is the signal intensity of the non-MT-weighted image, and SI_{MT} is the signal intensity of the MT-weighted image. To assess the potential age dependency of MT contrast in the lung, the mean MTR values of all healthy volunteers and patients without known lung disease were modeled as a function of age using linear regression.

Example coronal high-resolution non-MT-weighted and MT-weighted chest MRI with the resulting MTR maps are shown in Figure 2 for a healthy volunteer (Figure 2A), a T2-high asthma patient (Figure 2B), and a pulmonary fibrosis patient (Figure 2C). MT contrast varies strongly between the different cases. Mean whole-lung MTR is 28.1 pu for the healthy volunteer, 18.9 pu for the T2-high asthma patient, and 40.5 pu for the pulmonary fibrosis patient. Table 1 summarizes mean lung MTR values for all studied subjects within each group. Patients without known lung disease, as well as the healthy volunteers show similar mean MTR of (30.3 ± 1.8) pu, and (28.9 ± 1.2) pu, respectively. Pulmonary fibrosis patients however showed strongly increased mean MTR of (38.2 ± 2.1) pu, while T2-high asthma patients presented with a significantly lower mean MTR of (23.9 ± 4.1) pu. The mean MTR of the single cases are higher compared to the healthy volunteers and the patients without known lung disease with mean MTR values ranging from 32.8 pu to 39.8 pu. The age dependency of MT contrast in the lung for healthy volunteers and patients without known lung disease is shown in Figure 3. The linear regression indicates a minor increase in mean MTR of (0.036 ± 0.020) pu per year.

MT MRI of the lung using bSTAR at 0.55T is clinically feasible, with no patient or volunteer drop-outs to report. Moreover, our data suggests that MT contrast in the lung is highly dependent on the type of disease: pulmonary fibrosis as an interstitial lung disease leads to increased MTR values, while T2-high asthma as an obstructive airway disease decreases the mean MTR as compared to healthy volunteers and patients without known lung disease. Nonetheless, it is important to recognize that only three patients with T2-high asthma were assessed, so further data is required to verify this finding. Across healthy volunteers and patients without known lung disease, mean MTR values were highly similar with a slight increase with age.

To conclude, MT contrast shows good prospects to serve as a novel biomarker for assessing lung diseases, but this needs to be further evaluated by a larger-scale study.
Alexandra BRAUN (Basel, Switzerland) , Grzegorz BAUMAN , Maurice PRADELLA , Corinne ALLGEIER-SMITH , Jonathan RÖCKEN , Matthias Josef HERRMANN , Katrin E. HOSTETTLER , Oliver BIERI
14:03 - 14:06 #54617 - PG134 Unsupervised vessel-aware classification of pulmonary perfusion defects in pediatric DCE-MRI with probability and uncertainty mapping.
PG134 Unsupervised vessel-aware classification of pulmonary perfusion defects in pediatric DCE-MRI with probability and uncertainty mapping.

Voxel-wise classification of pulmonary perfusion defects in DCE-MRI remains challenging because reliable ground truth is difficult to obtain [1]. Manual labelling of defects and vessels is subjective, time-consuming, affected by motion, partial-volume effects, anatomical variability, and boundary uncertainty. This limits supervised and semi-supervised neural networks, which require reliable labels or expert standards [2,3]. Many workflows thus use histogram-based defect thresholding and top-percentile vessel exclusion [4], although these ignore morphology and spatial context. We propose an unsupervised, vessel-aware framework combining dynamic vessel segmentation, spatially regularized Gaussian mixture modelling, and probability/uncertainty mapping.

Pediatric lung DCE-MRI acquired at 1.5 T was processed using elastic registration [5], lung segmentation, baseline subtraction, AIF extraction, delay correction and model-free deconvolution, similar to prior lung MRI perfusion pipelines [6–8]. From voxel-wise residue functions, an R(Tmax) map, defined as the residue amplitude at the time of maximal mean lung residue response, was extracted and used for vessel detection and parenchymal classification. A schematic view of the pipeline is shown in Fig.1. To reduce supine-position bias, conditional anterior-posterior correction was applied when posterior R(Tmax) exceeded anterior values by >15%, using a trimmed lung profile and smooth AP normalization, as shown in Fig.2. Vessels were segmented by a dynamic detector rather than a fixed top-percentile threshold. High contrast-enhancement seeds were required to be locally prominent using robust local z-scores. Candidate regions were refined using connected-component constraints, intensity-constrained filling, vessel-shape filtering, anatomical restrictions, stricter posterior/inferior thresholds and posterior-rim capping. This encouraged connected vascular structures while suppressing false positives. After vessel exclusion, parenchyma was classified without manual labels using an asinh-transformed Gaussian mixture model [9] coupled with Markov random field regularization [10]. The mixture model separated low and high-R(Tmax) tissue distributions, while the MRF prior favoured spatially coherent labels through nearest-neighbor support. Outputs included supported defects and healthy parenchyma which were compared with standard two-class Otsu results. The model also produced class probability and uncertainty maps.

The method was tested in two representative cases: one patient with normal lung MRI findings and one cystic fibrosis (CF) patient with perfusion defects. Dynamic vessel detection was compared with naive top-percentile thresholding. Although vessel voxel fractions were similar, spatial distributions differed. The dynamic detector produced more plausible vessel masks, with better continuity and fewer posterior/inferior wall-like false positives. In contrast, percentile thresholding selected boundary-related high-intensity voxels inconsistent with vascular anatomy, as shown in Fig. 3. The dynamic vessel mask was then used as common vessel-exclusion input for Otsu and GMM-MRF classification. In the healthy case, defect percentage decreased from 16% with Otsu to 14% with GMM-MRF. Remaining defect labels were mainly peripheral, suggesting partial-volume effects or boundary instability. In the CF case, QDP increased from 20% with Otsu thresholding to 25% with GMM-MRF. Visual inspection showed more spatially coherent defect regions with the latter. Probability and uncertainty maps highlighted ambiguity near class transitions, vessels, and lung boundaries. Two representative slices are shown in Fig. 4 for the CF patient.

The framework addresses limited voxel-wise ground truth by combining unsupervised probabilistic modelling with physiologically motivated vessel handling. The vessel detector reduces a key failure mode of percentile thresholding, where posterior boundary voxels may be mislabeled as vessels despite implausible morphology. The GMM-MRF classifier addresses the complementary limitation that pure thresholding is objective and label-free but spatially unaware. Adding neighborhood support promotes coherent defect regions without supervised labels.

An unsupervised, vessel-aware GMM-MRF framework improved pediatric DCE-MRI perfusion defect classification compared with naive vessel and histogram-based thresholding. Dynamic vessel segmentation produced more anatomically plausible masks, while MRF regularization introduced spatial information, which is ignored by simple voxel-wise thresholding approaches. Combining AP correction, vessel-aware preprocessing, spatial regularization, and probability/uncertainty mapping provides a promising objective alternative when voxel-wise ground truth is unavailable. Although U-Nets [2], [4] and autoencoders [3] may provide more advanced representations, they remain difficult to apply robustly without reliable annotations.
Dimitrios BEKIARIS (Zurich, Switzerland) , Elena MORANDINI , Alexander MOELLER , Christian KELLENBERGER , Rahel HEULE
14:06 - 14:09 #54365 - PG135 Quantification of severity and extent of vena cava backflow using 4D flow MRI in patients with pulmonary arterial hypertension.
PG135 Quantification of severity and extent of vena cava backflow using 4D flow MRI in patients with pulmonary arterial hypertension.

Pulmonary arterial hypertension (PAH) is a progressive disease in which elevated pressures in the pulmonary precapillary system impose a chronic pressure overload on the right ventricle (RV). This pressure overload leads to RV stiffening, subsequent impairment of RV function, and ultimately RV failure, which is the main cause of death in PAH[1,2]. In PAH patients, RV dysfunction results in systemic venous congestion and contributes to hepatic and renal dysfunction, both of which are predictors of mortality in PAH patients[3-5]. In these patients, retrograde flow in the vena cava (VC backflow) occurs, and its severity during diastole is related to RV stiffness[6,7]. Therefore, VC backflow may both be a marker of RV stiffness, as well as a contributor and early marker for venous congestion. Four‐dimensional (4D) flow MRI enables visualization and quantification of VC flow throughout the cardiac cycle with large anatomical coverage, allowing detailed assessment of both the origin and extent of backflow[8].

Twelve PAH patients and twelve healthy controls from a prospective registry (approved by the institutional review board and registered in a public clinical trials registry) underwent 4D flow and cine MRI on a 1.5T system (MAGNETOM Sola, Siemens Healthineers, Erlangen, Germany). Additionally, patients underwent right heart catheterization (RHC) as part of the study protocol. Scan parameters for 4D flow MRI included: acquired/reconstructed spatial resolution 2.8x2.8x2.8 mm3 , temporal resolution 30.2–45.9 ms (30 cardiac phases), TR/TE = 5.5/3.2 ms, flip angle 7°, VENC = 120 cm/s, and scan time 10–20 minutes. A maximum cardiac time intensity 3D phase contrast angiogram was calculated and used to define compartments for flow quantification. Masks of the right heart (inferior and superior vena cava (IVC, SVC), vena hepatica (VH), right atrium, RV and pulmonary artery) were generated by semi automatic delineation (Napari with nnInteractive and 3D slicer) in 11 scans and by an nnUNet trained on 28 scans for the remaining studies, with all manual segmentations reviewed by an experienced cardiothoracic radiologist[9-13]. Flow was quantified in predefined volumes using a MATLAB based tool using automated centerline extraction and flow quantification (Figure 1)[14]. Analysis planes were selected in the SVC (4 cm above the right atrium) and in the IVC at the level of the VH branching to quantify flow (Figure 2). Distal backflow extent was defined as the most distal point along the centerline beyond which no negative (retrograde) flow occurred. Mann-Whitney U and Fisher’s exact tests were used to evaluate differences in backflow metrics between PAH patients and controls. Pearson's correlation coefficient was used to assess the relationship between backflow and RHC-derived mPAP and RAP.

The right ventricular ejection fraction (RVEF) was significantly lower in patients compared to controls (39.5% [34.5, 49.25] vs 52.0% [51.75, 56.0], p<0.001). Median mean pulmonary artery pressure (mPAP) and right atrial pressure (RAP) of the patient group were 50.0mmHg [47.5, 57.25] and 8.5mmHg [7.75, 10.5], respectively. Median IVC backward fractions were 8.02% [0.18, 12.7] vs 0.00% [0.00, 2.15], p=0.008)(Table 1, Figure 3). More patients showed substantial backflows at a distal level: 6 patients vs 0 controls showed backflow >15ml/s at 3cm distal from the VH (p = 0.014). SVC backflow was detected in all patients and controls, but significantly higher backward fractions were observed more distally in the SVC in patients compared to controls (10.27% [8.17, 14.77] vs 6.63% [2.91, 9.88], p=0.040). In patients, the backward fraction at the level of the VH showed a significant correlation with mPAP (r=0.78, p=0.003), but not with RAP (r = 0.03, p = 0.927).

PAH patients more often showed substantial venous backflow with greater distal propagation in the VC than controls. Although median volumes were low, marked backflow in a subset and strong correlation of IVC backward fraction with mPAP suggest clinically relevant venous hemodynamic changes. These findings support 4D flow MRI as a feasible, noninvasive tool to quantify venous backflow. Longitudinal studies and inclusion of patients with confirmed venous congestion are needed to assess prognostic value and links to disease progression. Comparing diastolic and systolic backflow may yield additional insights. Limitations include small sample size, limited 4D flow spatial resolution, and a cardiac centered field of view and velocity encoding (120 cm/s), that may have limited the assessment of the full extent of distal backflow.

4D flow MRI shows promise for detailed assessment of VC flow and underlying mechanisms of venous congestion in PAH. Further technical improvements, including higher resolution and contrast enhancement, may enable evaluation of smaller vessels. Larger, longitudinal studies are needed to define backflow phenotypes and their relationship to clinical parameters.
Fleur LYCKLAMA (Amsterdam, The Netherlands) , Eric SCHRAUBEN , Beatrix ATEM , Lilian J. MEIJBOOM , J. Tim MARCUS , Eszter TÓTH , Lucas CELANT , Harm Jan BOGAARD , Anton VONK NOORDEGRAAF , Pim VAN OOIJ
14:09 - 14:12 #54394 - PG136 Know your limitations: Systematic differences in right ventricular volumes measured by 4D flow and cine CMR.
PG136 Know your limitations: Systematic differences in right ventricular volumes measured by 4D flow and cine CMR.

Intracardiac 4D flow cardiovascular magnetic resonance (CMR) is a powerful technique to assess cardiac and vascular hemodynamics[1,2]. With recent technological advancements and the growing availability of user-friendly post-processing solutions, its clinical applicability is rapidly increasing. However, current 4D flow workflows depend on the definition of a region of interest within which flow parameters are quantified, and many commonly used software packages allow only a single analysis volume created from a maximum intensity projection or an average over the time dimension (3D PC angiogram, 3DPC). This limitation is particularly applicable to the cardiac chambers with large volumetric changes across the cardiac cycle, such as the right ventricle (RV). This study quantifies the discrepancy between 4D flow-derived 3DPC RV masks and cine-derived end-diastolic and end-systolic RV volumes, with the overarching goal of clarifying consequences of methodological choices in 4D flow post-processing.

CMR scans were acquired as part of a prospective cohort study and registry (approved by the institutional review board and registered in a public clinical trials registry) and included 13 patients with pulmonary arterial hypertension and 15 healthy controls. 4D flow acquisitions were performed with contrast in 9 patients and without contrast in the remaining patients and controls, with isotropic voxel size/TR/TE/flip angle of 1.4 mm/4.5 ms/2.6 ms/15° (contrast-enhanced) and 2.8 mm/5.5 ms/3.2 ms/7° (non-contrast), with scan times of 10–20 minutes depending on heart rate. A 3DPC was reconstructed using maximum-intensity projections of the absolute velocity multiplied by PC magnitude over the cardiac cycle. Segmentations were obtained using a semi-automatic workflow (Napari with nnInteractive and 3D Slicer) and reviewed by an experienced cardiothoracic radiologist[3-6]. Cine datasets were acquired as stacks of contiguous 2D balanced steady‑state free precession (bSSFP) short‑axis slices (in‑plane resolution 1.7 × 1.7 mm, slice thickness 6 mm, slice spacing 10 mm; flip angle 55-63° non-contrast, 62–74° with‑contrast). RV volumes were derived by semi-automated endocardial delineation in cvi42 (Circle Cardiovascular Imaging Inc., Calgary, Canada) and verified by a cardiothoracic radiologist. Agreement between 4D flow-based and cine-derived RV volumes was evaluated using Pearson’s correlation and Bland-Altman analysis, and the relationship between average RV flow velocity and volumetric discrepancies was assessed (Figure 1).

The median difference between 4D flow-derived RV volumes compared to cine EDV was -72.2 mL (limits of agreement in 95% interval (LoA) -22.2 to -150.1mL), whereas the median difference between 4D flow-derived RV volumes and cine ESV was 2.6mL (LoA -69.2 to 54.2mL) (Figure 2). Linear regression of cine RV volumes vs 3DPC yielded a slope 1.05 and intercept 70.5 mL for EDV, indicating a systematic underestimation. For ESV, the slope and intercept were 0.84 and 12.1, respectively, indicating that 3DPC ESVs increasingly overestimate cine ESV at higher RV volumes. The 3DPC-cine difference correlated with cine EDV (r = 0.75, p < 0.001 in diastole and r = 0.54, p = 0.003 in systole), indicating that bias increased with RV size. No significant association was found between mean flow velocity within the RV and the volume discrepancy for either EDV (r = 0.09, p = 0.637) or ESV (r = 0.08, p = 0.685) (Figure 3).

RV volumes measured on 4D flow derived 3DPC showed a systematic bias compared with cine EDV and a conditional bias compared with cine ESV, increasing at higher ESVs. The observed volumetric changes increased with RV size rather than with mean flow velocity. Metrics such as stroke volume, and reservoir function, will be inaccurate if the RV is incompletely represented, particularly in dilated ventricles. However, even metrics that do not directly rely on anatomic boundaries, such as kinetic energy, are computed over an incompletely represented cavity, leading to errors when indexing metrics to RV volume. Therefore, the use of a single static mask in a chamber with large volumetric variation can lead to biased hemodynamic measurements.

A consistent and substantial discrepancy was observed between RV volumes derived from 4D flow CMR and cine-based systolic and diastolic volumes, with differences increasing in subjects with larger RV dimensions. For cardiac compartments with large volumetric variation over time, quantitative 4D flow CMR should rely on time-resolved masks rather than a single static analysis volume. Adoption of time-resolved ventricular masking or cine-guided segmentations is needed to obtain reliable volumetric and anatomy-dependent hemodynamic measures from 4D flow CMR.
Fleur LYCKLAMA (Amsterdam, The Netherlands) , Lilian J. MEIJBOOM , Joost VAN SCHUPPEN , Ayma MAQSOOD , J. Tim MARCUS , Eszter TÓTH , Lucas CELANT , Harm Jan BOGAARD , Anton VONK NOORDEGRAAF , Eric SCHRAUBEN , Pim VAN OOIJ
14:12 - 14:15 #54641 - PG137 Assessing Graft Quality by NMR in Heart Donation after Circulatory Death(DCD).
PG137 Assessing Graft Quality by NMR in Heart Donation after Circulatory Death(DCD).

Hearts in DCD could expand the transplant donor pool[1], yet clinicians still judge graft quality from lactate and visual assessment. In our previous 1H-HR-NMR study, we used a porcine DCD model to evaluate circulating factors and metabolites in donor blood and Ex-Situ Heart Perfusion(ESHP) perfusate as biomarkers of recovery and identified several candidates that correlated with cardiac outcome measures like Left Ventricular Work(LVW) or Cardiac Output(CO)[2]. Our previous oPLS analysis of perfusate metabolites showed strong associations with cardiac recovery but did not address nonlinear and time-dependent metabolite–recovery relationships. Here, we apply more flexible, regularised and nonlinear models to longitudinal metabolite kinetics, with the cohort extended by 4 pigs held out as a blinded test set. This abstract is the 2nd stage of a registered report.

We analysed a porcine DCD cohort (n=23 male pigs, 55±7 kg) [2], extended with 4 unseen held-out pigs. After 0–30 min warm ischemia, 30 min cold storage, and 3 h unloaded ex-situ perfusion, hearts underwent 1 h of loaded perfusion to measure LVW, CO and other recovery indicators. During unloaded perfusion, perfusate was sampled at 5 timepoints(0, 20, 40, 60, 180 min) and analysed by ¹H-NMR, yielding 33 metabolite intensities per sample. For exploratory structure, we applied PHATE[6] to the 33-metabolite space. For each metabolite, we fitted zero-, first-, and second-order kinetic models and chose the best fit by residual variance [3]. We trained 9 regression models in 3 families: (i) classical regression: OPLS[4], PLS, LWR with global PCR, Random Forest, SVR, XGBoost; (ii) ElasticNet and MultiTask ElasticNet to evaluate metabolite collinearity and joint LVW + CO modelling[5]; (iii) a Temporal Convolutional Network (TCN) for time-dependent recovery, and a Graph Neural Network(GNN) with learned 33×33 adjacency. To separate intra-pig from inter-pig generalisation, classical models were cross-validated under two schemes: Venetian Blinds 10-fold (VB; intra-pig) and Leave-One-Pig-Out (LOPO; inter-pig), with 50-permutation testing.

PHATE embedding revealed a V-shaped manifold: samples followed a continuous trajectory from 0-min ischemia (right arm, high LVW/CO) up to an apex and down to 30-min ischemia (left arm, low LVW/CO; Fig 1). Only LVW, CO and developed pressure formed smooth monotonic gradients along PHATE1. Metabolite state, thus mapped continuously onto LVW and CO, supporting their multivariate prediction from the metabolite profile. Kinetic fitting showed mixed dynamics (Fig 2): linear accumulation (lactate, alanine, succinate, creatine), first-order rises (glycerine, histidine, amino acids) and second-order kinetics (inosine, creatinine), confirming the directional trends we previously reported [2]. OPLS reproduced our earlier ischemic-group separation(Q²(LOO)=0.88). VB consistently exceeded LOPO across all classical models(Fig 3–4): SVM (VB 0.93/LOPO 0.84), Random Forest (0.89/0.82), XGBoost (0.88/0.83), PLS (0.88/0.83), LWR (0.83/0.80). The gap (ΔQ²=0.03–0.09) quantifies per-pig signal that does not transfer to unseen animals. ElasticNet outperformed every classical baseline: Cal R²=0.91, CV R²=0.88, external R²=0.925 on the blinded pigs (RMSE=961). MultiTask ElasticNet matched it. Coefficients ranked succinate and lactate as the strongest negative LVW predictors, leucine, lysine and val/leu as positive (Fig 2), confirming our earlier biomarker panel [2] under a stricter multivariate regime. XGBoost reached the highest external R²=0.96 (RMSE=67). All significant models passed permutation testing at p<0.001.

This work confirms and extends our previous findings[2]. Confirmation: the same metabolite signatures (succinate, lactate, hypoxanthine, fumarate, creatine, creatinine) re-emerge as top predictors under multivariate, regularised models. Extension: (i) PHATE reveals a metabolic degradation manifold aligning with cardiac function, justifying LVW/CO as endpoints; (ii) kinetic trajectories replace snapshots, capturing temporal metabolite behaviour; (iii) blinded testing on four held-out pigs shows the signal predicts LVW in unseen animals (external R² up to 0.96), addressing the validation gap noted in [2]; (iv) the VB–LOPO contrast shows part of the signal is pig-specific, yet inter-pig generalisation remains strong (Q²>0.80). More complex deep learning models (TCN, GNN) require larger cohorts and denser timepoint sampling to generalise: with training n=19 and 5 timepoints, they currently underperform the regularised linear baselines. Future work will expand the porcine cohort, add intermediate sampling timepoints, and validate the ElasticNet biomarker panel on incoming pigs.

Multivariate machine learning on ¹H-NMR perfusate kinetics confirms our previously reported biomarker panel[2] and predicts cardiac recovery on blinded DCD hearts with external R² up to 0.96. This moves our work from biomarker discovery to validated, quantitative graft assessment.
Ambra JIN (Bern, Switzerland) , Peter VERMATHEN , Selianne GRAF , Sarah HENNING LONGNUS , Manuel EGLE
14:15 - 15:00 Visit posters PG123-PG137.
Sala d’Assaig

"Thursday 01 October"

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E13
13:30 - 15:00

ET1-3 - Building Together: Open Science Fair

ET Research
Sala 1
14:15

"Thursday 01 October"

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I12
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Poster 2
FT2 Diffusion

14:15 - 15:00 #54336 - P231 Tract-specific diffusion MRI characterization of white matter alterations in pediatric-onset Huntington Disease.
P231 Tract-specific diffusion MRI characterization of white matter alterations in pediatric-onset Huntington Disease.

Pediatric-onset Huntington disease (POHD) is a rare and severe form of Huntington disease (HD) [1,2] characterized by early disease onset, higher Cytosine–Adenine–Guanine (CAG) repeat expansion in the Huntingtin gene (HTT) and clinical features partially distinct from adult-onset HD (AOHD). While white-matter (WM) degeneration has been extensively described in AOHD, the microstructural organization of WM in POHD remains poorly characterized in vivo. The aim of this study was to investigate the extent and spatial distribution of WM microstructural alterations in POHD using diffusion-weighted MRI and to compare these changes with those observed in AOHD and age-matched healthy controls (HC). Using diffusivity and anisotropy metrics extracted from major WM tracts, we investigated whether POHD exhibits a distinct pattern of WM involvement relative to the classical adult-onset phenotype.

The cohort included 19 patients with HD, including 5 POHD and 14 AOHD patients, as well as 27 HC stratified by age into 18 adult-HC (AHC) and 9 pediatric-HC (PHC). POHD patients carried ≥60 CAG repeats, whereas AOHD patients carried ≤59 repeats in the HTT gene. All participants underwent 3T MRI Biograph mMR, Siemens Healthineers, Forchheim, Germany), as well as clinical and neuropsychological assessment, as recommended by the ENROLL-HD protocol [3]. Specifically we acquired: T1 weighted (MPRAGE, 176 sagittal planes, 256×256 mm2 FOV, voxel size 1×1×1 mm3, TR/TE/TI=2300/2.34/900 ms, flip angle 8°, TA= 5’12’’); diffusion-weighted scans (EPI, 70 slices, phase encoding A>>P, 250x250 mm2 FOV, voxel size 2.5x2.5x2.3 mm3, TR/TE=8900/88 ms, b=1000 s/mm2, diffusion weighting along 64 gradient directions, number of b0 images=9, TA=11’36’’). DTI data metrics were processed by using ENIGMA-DTI protocols [4,5]. Preprocessing including image denoising, correction for eddy currents and EPI distortion using FSL tools. Following tensor estimation was performed to create fractional anisotropy (FA), mean diffusivity (MD), radial diffusivity (RD), and axial diffusivity (AD) maps. Finally mean diffusion measurements were extracted from 38 WM tracts defined according to the JHU atlas and grouped into association, projection, and commissural pathways [6] (Figure 1). Statistical analyses were performed using RStudio. Depending on data distribution, ANOVA or Kruskal–Wallis tests followed by post hoc comparisons were applied, with false discovery rate correction for multiple comparisons. Comparisons included AOHD vs AHC, POHD vs PHC, and POHD vs AOHD.

Main findings are shown in figures 2 and 3. In detail, AOHD patients compared to AHC showed widespread WM abnormalities involving projection, association, and commissural pathways. Decreased FA and increased MD, AD and RD were observed across multiple tracts, including corona radiata, internal capsule, corticospinal tract, superior longitudinal fasciculus, uncinate fasciculus, external capsule, sagittal stratum, and corpus callosum subdivisions. In contrast, POHD patients compared to PHC exhibited a more spatially restricted but distinct pattern of WM alterations predominantly involving projection pathways and selected association fibers. Significant abnormalities were observed in the superior corona radiata, anterior limb of the internal capsule, retrolenticular internal capsule, posterior thalamic radiation, sagittal stratum, and superior fronto-occipital fasciculus. Commissural fibers were relatively preserved in POHD compared with AOHD. Direct comparison between POHD and AOHD revealed higher diffusivity values in POHD within specific projection and association tracts, particularly the anterior limb of the internal capsule and superior fronto-occipital fasciculus, suggesting a differential pattern of WM vulnerability between the two disease forms.

Our findings demonstrate that POHD and AOHD share evidence of WM microstructural disruption but differ in the spatial distribution and severity of tract involvement [7,8]. AOHD was characterized by diffuse degeneration affecting large-scale WM networks, including commissural pathways, consistent with widespread axonal degeneration and demyelination. Conversely, POHD showed preferential involvement of projection pathways linked to cortico-striatal and thalamo-cortical circuits, while commissural tracts remained relatively preserved. These findings support the hypothesis that POHD may represent a neurodevelopmentally influenced and biologically distinct phenotype rather than simply an earlier manifestation of AOHD.

Diffusion MRI revealed distinct patterns of WM microstructural. POHD exhibited selective involvement of projection and association pathways, whereas AOHD showed more extensive and diffuse WM degeneration including commissural fibers. These results improve the understanding of WM pathology across different HD phenotypes and support the use of diffusion MRI as a promising biomarker for characterizing disease-specific neurodegenerative mechanisms in HD.
Maria Celeste BONACCI (Catanzaro, Italy) , Bruno IENNARELLA , Marta SCOCCHIA , Sabrina MAFFI , Emanuele TINELLI , Umberto SABATINI , Ferdinando SQUITIERI , Maria Eugenia CALIGIURI
14:15 - 15:00 #54425 - P232 Lithium-associated white matter microstructural changes in bipolar disorder: preliminary TBSS-tractometry results from the R-LiNk study.
P232 Lithium-associated white matter microstructural changes in bipolar disorder: preliminary TBSS-tractometry results from the R-LiNk study.

Bipolar Disorder (BD) is associated with widespread white matter (WM) abnormalities, particularly reduced fractional anisotropy (FA) in tracts involved in emotional regulation and higher-order cognitive processing [1]. These alterations may contribute to the impaired cognitive functioning and affective dysregulation characterizing BD [2]. Lithium remains the gold-standard pharmacological treatment for BD because of its mood-stabilizing, neuroprotective, and potentially neuroplastic effects [3]. Nevertheless, despite growing evidence suggesting that lithium may modulate brain connectivity and WM integrity, its impact on tract-specific WM microstructure remains insufficiently understood [4]. Therefore, in this preliminary study, we combined Tract-Based Spatial Statistics (TBSS) and tractometry analyses to investigate FA alterations associated with lithium response in BD patients.

Within the R-LiNk project [5], a multicenter European study on lithium response in BD, 123 patients (57 males, 66 females; mean age 39.8 ± 13.5 years) underwent diffusion-tensor Magnetic Resonance Imaging (MRI) (single-shot EPI, 32 directions, b = 0/1500 s/mm², with reversed phase-encoding for distortion correction; 3T scanners from Philips, Siemens, and GE) at baseline and after 3 months of lithium initiation. After 24 months of follow-up, patients were classified as Good Responders (GR), Partial Responders (PaR), or Non-Responders (NR). WM differences were assessed voxel-wise using TBSS [6] with Threshold-Free Cluster Enhancement (TFCE) correction; tracts showing significant group differences were reconstructed with TractSeg [7] and along-tract FA profiles were extracted with Family Wise Error (FWE) correction [8,9]. Statistical analyses compared GR vs. PaR+NR on pre-, post-treatment, and longitudinal FA changes. Age and sex were included as covariates, and results were corrected for multiple comparisons.

TBSS analysis of longitudinal FA changes revealed a statistically significant difference (TFCE-corrected) in the genu of the corpus callosum (CC), where GR exhibited higher FA variations after 3 months of lithium initiation compared to PaR+NR (Figure 1). Additionally, comparisons between GR and PaR+NR revealed pre-treatment FA differences in the body of the CC and post-treatment differences in the cingulum (Cg); however, neither finding survived correction for multiple comparisons. Based on TBSS results, tractometry analyses were performed on the CC, subdivided into seven anatomical subregions (rostrum, genu, rostral body, anterior midbody, posterior midbody, isthmus, splenium), and on bilateral Cg (left Cg, right Cg). Tractometry analyses on the longitudinal FA variations confirmed the TBSS findings, showing significant differences (FWE-corrected) in FA across several segments of the genu of the CC in GR compared with PaR+NR (Figure 2). No additional tractometry findings survived correction for multiple comparisons.

Our findings suggest that the genu of the CC may represent a relevant WM substrate associated with clinical response to lithium treatment in BD. Specifically, differences in the variation of FA three months after lithium initiation within the genu of the CC distinguished patients with better clinical outcomes at month 24 from those showing poorer response, supporting its potential role as a neurobiological marker of lithium responsiveness. Given the involvement of the genu of the CC in the pathophysiology of BD and its connections with frontal regions implicated in emotional regulation and higher-order cognitive functioning [10], microstructural differences within this region may reflect distinct patterns of interhemispheric connectivity associated with treatment outcome. Nevertheless, these findings should be interpreted cautiously because lithium blood levels and mood state at the time of MRI acquisition were not included as covariates.

Lithium response assessed prospectively in BD type I appears to be associated with tract-specific FA differences predominantly involving the genu of the CC at baseline and 3 months after lithium initiation. These findings support the hypothesis that WM microstructural patterns within this region may represent promising biomarkers of lithium responsiveness and treatment outcome in BD. Further longitudinal studies integrating pharmacokinetic measures and mood-state clinical assessments are needed to clarify the neurobiological mechanisms underlying lithium-related WM changes.
Giovanni VIDETTA (Milan, Italy) , Letizia SQUARCINA , Giuseppe DELVECCHIO , Alessandro PIGONI , Guido NOSARI , Ylenia BARONE , Giandomenico SCHIENA , Antonio CALLARI , Lorena DI CONSOLI , Ottavia MARCHESE , Adele FERRO , David COUSINS , Fawzi BOUMEZBEUR , Edouard DUCHESNAY , Peter Edward THELWALL , Marie CHUPIN , Frank BELLIVIER , Paolo BRAMBILLA
14:15 - 15:00 #54571 - P233 Preliminary Evaluation of Fractional Anisotropy Sensitivity to Longitudinal Changes Following Peripheral Nerve Injury.
P233 Preliminary Evaluation of Fractional Anisotropy Sensitivity to Longitudinal Changes Following Peripheral Nerve Injury.

Peripheral nerve injuries are common in military operational environments, where delayed assessment of nerve degeneration and regeneration may prolong rehabilitation and delay return-to-duty decisions. In severe cases, surgery may be required to regain function; however, it can take months for electrodiagnostics to confirm surgical success, delaying clinical decision-making. There is a growing need for a biomarker of nerve recovery that can detect changes earlier and noninvasively. Fractional anisotropy (FA) values from diffusion MRI may fill this gap by reporting on failed surgeries, successful reoperations, and injury severity. Our group has demonstrated test-retest reliability, multi-site reproducibility, and demographic effects of this candidate biomarker. Diffusion tensor imaging may serve as a biomarker of nerve regeneration; however, the complex spatial and temporal changes along the distal segment of the nerve remains challenging to interpret. To address this, we applied the Gompertz function to mathematically characterize these changes and capture the nonlinear dynamics of recovery following nerve trauma. The aim of the study was to evaluate the ability of DTI to track axonal regeneration in an in-vivo pre-clinical sciatic nerve injury model. The ability of MRI to monitor nerve recovery serves as an accessible, non-surgical intervention to enhance rehabilitation outcomes.

Twenty-four MRI scans from a total of eight nerves were obtained resulting in five healthy nerves and three nerves suffering from traumatic peripheral nerve injury. A 33 - and a 39 -year-old female patients, suffered from a complex tendon injury with median nerve transection from a forearm laceration. Both nerve injuries were treated via nerve repair surgery including group fascicular repair and epineural repair. Clinical sensory exams, motor function exams, were performed between 1- and 12-months after nerve repair surgery 1,2. MRI data was acquired using a Philips 3.0-T Ingenia CX scanner with a small extremity 8-channel coil. Subjects were scanned in prone or lateral decubitus position, with one arm extended over the head and centered within the bore of the scanner. MRI scans were obtained at 41, 104, 188 days and at 72, 152, 198 days postoperatively respectively. FA was estimated using standard diffusion MRI acquisition and analysis methods.

: Clinical sensory and motor (S&M) assessments of repaired nerves were conducted at 1 and 11 months post-surgery (Table 1). Figure 1A) shows tractography results. Figure 1B) presents slice-wise mean FA from each nerve in each arm matching the order in Figure 1 A). Boxplots summarize the FA distributions, with mean values marked by diamonds. Gompertz function was fitted to each FA curve 3,4,5. Parameter’s values for all nerves and time points, are organized by arm (left/right), nerve (ulnar/median), and timepoint (1–3). ∆FA indicated overall lower FA at the distal region than at the proximal region for all nerves. However, ∆FA were ≤0.18 in all healthy nerves and mostly ≥0.18 in the injured nerves across all time points. FATarget in healthy nerves was ≥0.5 and <0.5in injured nerves. Xi did not show any pattern over time and had larger error values in healthy nerves than injured nerves. Finally, FAi exhibited values >0.61 in the healthy nerves and <0.61 in the injured nerves. Exploratory correlation between FATarget of injured nerves and the S&M assessments showed strong exploratory correlations between FATarget and Motor Assessment (r = 0.791) and a strong but more moderate exploratory correlations between FATarget and Sensory Assessment (r = 0.646). In both cases, the low sample size is reflected in the form of p-values larger than 0.05.

In this study, FA from DTI matched clinical assessments and levels of nerve recovery. Across all subjects, FATarget were: i) significantly reduced in TPNI relative to healthy control nerves, ii) FA of healthy nerves are higher when no injury was present in that arm, iii) nerves showed FA a consistent with changes in S&M measurements, suggesting the capacity to accurately determine degeneration and potential levels during the regeneration process.

FA profiles quantitatively differentiated between healthy and injured nerves, potentially providing a biomarker of time-dependent nerve recovery. Our results indicate that the derived parameter FATarget can accurately categorize nerve recovery over time, supporting its ability to identify early recovery or failure and determine whether a second intervention may be needed.
Isaac MANZANERA ESTEVE (Nashville, USA) , Barite GUTAMA , Ronald CORNELY , Yan LING , Sharon CHRISTOPHER , Kristianna LOMBARDI , Galen PERDIKIS , Mark MAHAN , Richard DORTCH , Wesley THAYER
14:15 - 15:00 #54212 - P234 Taking a new angle to map microstructural collapse and occult pathology in brain tumors using orientation-dependent NODDI.
P234 Taking a new angle to map microstructural collapse and occult pathology in brain tumors using orientation-dependent NODDI.

Standard structural MRI inadequately captures the heterogeneous microenvironment of brain tumors [1]. Multi-shell diffusion models like Neurite Orientation Dispersion and Density Imaging (NODDI) offer specific microstructural parameters to characterize tissue architecture [2]. While the macroscopic orientation dependence of relaxation parameters (e.g., R2*) relative to the main magnetic field (B0​) is well-established in organized white matter [3], recent evidence indicates that NODDI parameters also exhibit intrinsic orientation dependence in intact white matter [4]. However, the behavior of NODDI parameters across tumor pathology remains largely unexplored. Evaluating this orientation dependence may offer a new way to differentiate intact tissue from pathological breakdown. This study investigates the orientation dependence of NODDI parameters across distinct tumor regions and assesses normal-appearing white matter (NAWM) of brain tumor patients for occult microstructural alterations.

Eight age-matched patients with metastasis or high grade glioma and 4 healthy controls underwent 3T head MRI (MAGNETOM Skyrafit, Siemens Healthineers) (Table 1). The scan protocol consisted of a multi-shell diffusion sequence for determination of first eigenvector and NODDI parameters (b=0,1000,2000 s/mm2, 30 directions, TE=96 ms, TR=6100 ms, 1.6x1.6x1.8 mm3 resolution), a multi-echo gradient-echo sequence for R2* mapping (6 TEs=4.9-29.5 ms, TR=35 ms, 1 mm3 isotropic resolution) and an MPRAGE sequence for segmentation (TE=2.1 ms, TR=1690 ms, flip angle=8°, 0.8 mm3 isotropic resolution). Clinical sequences (T2-weighted, FLAIR and post-contrast T1-weighted) were used alongside MPRAGE data for automatic segmentation of necrosis, edema and enhancing tumor using BraTs algorithms [5]. NAWM was segmented using MPRAGE data in FreeSurfer [6], with all BraTS tumor labels excluded. Diffusion data were preprocessed using TractoFlow [7]. NODDI modeling based on the Watson distribution in CuDIMOT [8] was used to calculate orientation dispersion index (ODI), neurite density index (NDI) and free water fraction (FWF) maps. The primary diffusion eigenvector served to determine the fiber angle relative to B0. Notably, in non-directional pathological regions, this vector acts only as a mathematical approximation.

Figure 1 illustrates R2* and NODDI parameter maps alongside segmented masks for an exemplary metastasis patient. By plotting mean R2* against NODDI parameters (Figure 2), NAWM forms a tight cluster for patients and healthy controls, whereas enhancing tumor and necrosis exhibit wide dispersion and overlapping values. When evaluating orientation dependence across these regions (Figure 3), the analysis confirms that every angular bin contains sufficient voxels, with necrosis demonstrating the lowest voxel count. Intra-subject variability progressively increases from NAWM through edema and enhancing tumor, peaking in necrosis. In NAWM, R2* plots reflect the expected robust orientation dependence, with a similar variance across groups, whereas NODDI parameters reveal higher inter-subject variance in patients than in healthy controls. In edema, the structured orientation-dependence observed in NAWM is lost: trajectories flatten across angles but disperse across subjects. Within the enhancing tumor, the lack of coherent orientation dependence is maintained, with further increased inter-subject variability. Necrotic tissue demonstrates erratic orientation-related patterns across all parameters.

Combining macroscopic relaxation and microstructure parameters distinguishes relatively intact architecture (NAWM, edema) from severe degradation (enhancing tumor, necrosis). In patient NAWM, elevated variance in NODDI parameters suggests patient-specific occult microstructural disruption, such as diffuse infiltration, within normal tissue [9]. The absence of corresponding variance in R2* indicates that NODDI parameters offer superior sensitivity to early pathological changes before macroscopic relaxation changes occur. In pathological regions, orientation-dependent behavior mirrors the underlying architectural breakdown. While intrinsic orientation dependence of NODDI parameters reflects the organized structure of intact white matter [4], the flat trajectories observed in edema and enhancing tumor reflect structural inconsistency and microstructural heterogeneity. The erratic orientation curves in necrosis reflect complete macroscopic architectural collapse, successfully leveraging the failure of NODDI’s assumptions as an indicator of tissue death [2]. One metastasis patient appears as an edema outlier in Figure 2, possibly reflecting the tumor location within the brainstem.

Orientation dependent NODDI parameters map the progressive loss of microstructural anisotropy across tumor regions and highlight early pathology in NAWM. Further studies with larger cohorts are required to validate these exploratory findings.
Melanie BAUER (Innsbruck, Austria) , Stephanie MANGESIUS , Julian MANGESIUS , Daniel PINGGERA , Christian F FREYSCHLAG , Adelheid WÖHRER , Astrid GRAMS , Elke R. GIZEWSKI , Christoph BIRKL
14:15 - 15:00 #54329 - P235 Ex vivo microstructural characterization of oral squamous cell carcinoma using IMPULSED time-dependent diffusion MRI.
P235 Ex vivo microstructural characterization of oral squamous cell carcinoma using IMPULSED time-dependent diffusion MRI.

Diffusion-weighted imaging (DWI) is a widely used technique for tumor characterization, with the apparent diffusion coefficient (ADC) often used as the standard metric [1]. Time-dependent diffusion (TDD) measures restricted and hindered diffusion at different diffusion times, probing water motion in relation to structural barriers. TDD measurements can have benefits over common ADC measurements in assessing tissue properties such as cell radius and intracellular volume fraction. Commonly, pulsed gradient spin echo (PGSE) waveforms are used; however, PGSE is limited in achieving short diffusion times. Oscillating gradient spin echo (OGSE) waveforms overcome this, enabling greater sensitivity to smaller microstructures and intrinsic diffusivity [2]. The IMPULSED [3] framework extends this approach by combining OGSE and PGSE, which allows microstructural parameter estimation, including cell radius (R), intracellular volume fraction (ICV), and intra- and extracellular diffusion constants (Din and Dex). This study investigates the IMPULSED framework in oral squamous cell carcinoma (OSCC) surgical specimens to characterize tumor microstructures and validate derived imaging parameters against histopathological reference data.

Ex vivo MRI data were acquired from a single OSCC surgical specimen using multiple OGSE and PGSE diffusion scans (Table 1). All scans utilized multishot spin-echo echo-planar imaging (EPI) sequences. Voxelwise diffusion signals were fitted to the IMPULSED signal model using non-linear least squares to estimate tissue microstructural parameters. To improve robustness, model fitting used 100 random initializations with the following parameter bounds: ICV 0.05–0.95, R 1–25 μm, and Dex 0.1–3 μm^2/ms. Din was fixed to ensure fitting stability. As a reference diffusion metric, ADC maps were additionally calculated from the PGSE data. For histopathological comparison, a two-dimensional IMPULSED-derived cellularity metric (2D-IC) was estimated from the fitted parameters [3], enabling a better comparison with the two-dimensional cellularity measures obtained from histopathology. Histopathological analysis utilized H&E-stained tissue sections with manual tumor delineation. This delineation was voxelized into 500 μm^2 tiles, and Hover-Next [4,5] was used to detect cells and generate a pathology cellularity (PC) map at the MRI data's resolution. Correlation analysis between 2D-IC, PC, and ADC was performed using the Spearman ρ correlation coefficient.

Figure 1 displays the PC map alongside the estimated IMPULSED parameter maps, illustrating spatial variations in ICV, R, Dex, and 2D-IC across the specimen. Figure 2 shows a significant, moderate positive correlation between 2D-IC and PC( ρ = 0.607, p = 0.019), indicating that the IMPULSED-derived metric shows agreement with histopathological cellularity. Conversely, ADC showed a significant, moderate negative correlation with PC (ρ = -0.631, p = 0.016). A significant negative correlation was also found between 2D-IC and ADC (ρ = -0.550, p = 0.036). Figure 3 demonstrates visual agreement between the PC and 2D-IC maps. For example, the top-left voxel shows low cellularity in both methods, corresponding to a large neoplastic cell region visible in the pathology data. Alternatively, the bottom-left shows high cellularity in both methods due to numerous inflammatory cells seen in the pathology data.

The OSCC results reveal that both 2D-IC and ADC correlate with PC at comparable magnitudes but with opposite polarities. Despite these similar correlations, IMPULSED parameters capture specific microstructural information, whereas ADC reflects a broader mix of diffusion-related effects. This explains the lower correlation between 2D-IC and ADC, as they are differently modulated by microstructure properties. The estimated IMPULSED parameter maps show relatively low intracellular volume fractions and cell radii (ICV: 0–0.15; R: 0–4μm) compared to expected biophysical ranges. This underestimation contributes to the order-of-magnitude difference between 2D-IC and PC. This discrepancy may be further amplified by error propagation when computing 2D-IC from the estimated ICV and R values. Additionally, hardware and protocol limitations, such as uncompensated eddy current effects, may have introduced a systematic bias contributing to this underestimation. Nevertheless, 2D-IC preserves the relative spatial variation of tissue cellularity across the specimen.

Overall, TDD-MRI combined with the IMPULSED framework provides relative spatial mapping of microstructure in OSCC specimens, offering information beyond conventional ADC. While absolute biophysical values were underestimated, the observed correlations with pathology cellularity support the framework's potential for tissue characterization.
Jeroen DE GROOT (Utrecht, The Netherlands) , Carlijn GUICHELAAR , Chantal TAX , Marielle PHILIPPENS
14:15 - 15:00 #54346 - P236 Development of a GUI based on Python for DWI Quality Analysis.
P236 Development of a GUI based on Python for DWI Quality Analysis.

Neurological diseases are the leading cause of disability and the second cause of death worldwide [1-3], stroke is the first cause among neurological disorders in 19 of 21 regions [3]. Similarly, tumors of the central nervous system (CNS) are on the rise due to the aging population in the aging group where they commonly occur (over 60 years old) [4-5]. Likewise, it has been reported that prompt attention can save a person’s life and increase their chances of a successful recovery. Currently, Diffusion-Weighted Magnetic Resonance Imaging (DWI-MRI) has revolutionized neurological approaches, as it allows, in a non-invasive way, the in vivo characterization of the structure and orientation of fibrous tissue -such as white matter-, making it possible to monitor progression of recovery of diseases (such as stroke and CNS tumors) and evaluate effectiveness of therapeutic or rehabilitation treatment. The aim of this work is to evaluate quality of Diffusion-Weighted images, using a graphical user interface, which includes different quality metrics (gradient artifacts, temporal signal-to-noise ratio [tSNR], signal-to-noise ratio [SNR], and contrast-to-noise ratio [CNR]), establishing quantitative parameters for the viability of the images for diagnostic planning purposes. Additionally, a preliminary Diffusion Tensor Imaging (DTI) reconstruction was performed to assess the feasibility of the studies for subsequent analysis.

A graphical user interface was developed on Python 3.11.9 using Qt Designer, due to its free access and the variety of libraries and modules. Unlike fMRI, there is no consensus on the definitions of quality parameters, and in some cases, only the results are presented without explaining how they are calculated. Therefore, it was decided to use the methods described by: Welvaert and Rosseel for tSNR, Griffanti for SNR, and Gutberlet for CNR (Figure 1). To address eddy currents artifacts, a brain mask was created using the anatomical file to assess how much information from DWI study was retained, it is important to emphasize that the objective was not to correct artifacts, but simply show which b-values yields the best results (Figure 2). Additionally, an estimation of DTI reconstruction using linear least squares (LLS) method was implemented for an overview of tracts; FA and MD metrics can also be obtained with the interface.

The interface was evaluated with data from 10 anonymized patients. All data comes from tests performed during the installation of a 3 T system, where technicians and other volunteers were scanned to verify the equipment’s proper functioning. No studies were conducted for diagnostic purposes. Dataset and interface can be accessed freely through GitHub link: https://github.com/stefanixgonzalez/Difusion-MRI--Control-de-Calidad/releases/tag/DWI-MRI, at the moment, interface is only available in Spanish. Table 1 shows results of tSNR, SNR, and CNR for all 10 data available on the dataset. All results here were obtained with a 4 mm radius ROI’s (user can modify this value).

It was observed that tSNR and CNR have limitations in previously processed images, and unfortunately, quantitative SNR and CNR values ​​for b=0 were not available. Furthermore, the importance of performing diffusion studies with more than six non-zero b-values ​​was confirmed to obtain accurate DTI reconstruction. Regarding gradient artifact masks, it was observed that the mask presented difficulties at the base of the brain (temporal lobe, air-tissue interface, ocular region), but in most cases, it formed correctly in central slices, sometimes including parts of the skull and skin.

Further testing is still needed to address the shortcomings of masks used to evaluate gradient artifacts and DTIs. This can be achieved through the implementation of neural networks or atlas-based methods. It is also necessary to verify whether the choice of ROIs and their position truly contribute to obtaining a quantitative value that accurately represents image quality. To overcome the disadvantage of not having a quantitative SNR and CNR value when b=0, it is proposed to use the various methods reported in the literature in conjunction with a qualitative review of the images to determine which one provides the best quantitative value for the best image. The aim is for the developed interface to be a first step towards unifying quality metrics for Diffusion-Weighted Images. This interface should be improved and evolved with the support of different disciplines, ensuring that, as neurological diseases become increasingly common, the necessary resources are available to provide immediate care to patients, preventing potential sequelae or deaths.
Stefani X GONZÁLEZ , Alfredo O RODRIGUEZ (Mexico City, Mexico) , Rodrigo MARTIN
14:15 - 15:00 #54256 - P237 Impact of moderate Multiband Acceleration on Diffusion MRI Quality of the Brain at 3T.
P237 Impact of moderate Multiband Acceleration on Diffusion MRI Quality of the Brain at 3T.

Diffusion MRI requires balancing scan time, image quality, and reconstruction stability. Although simultaneous multislice imaging with multiband (MB) acceleration improves efficiency, high MB factors combined with parallel imaging (GRAPPA) often introduce reconstruction artifacts. In a prior study, MB factors ≥ 4 produced noticeable artifacts, while removing GRAPPA led to severe EPI distortions. A basic single-band (noMB) acquisition was therefore adopted for robustness, despite a long scan duration (~16 min). This study compares a moderate multiband (MB2) protocol against the single-band (noMB) reference to determine to what degree MB2 can reduce scan time to ~8 min without compromising image and diffusion quality.

Fifteen subjects underwent diffusion MRI of the brain using a 64 channel head coil at a Siemens Prisma 3T system. Two matched 2D single-shot spin-echo echo-planar imaging acquisition protocols were compared: MB2 vs noMB (both with TE = 90 ms, flip angle = 90°, isotropic 2 mm voxels). Image quality was comprehensively evaluated using automated MRIQC metrics across domains including signal-to-noise-ratio (SNR), foreground/background statistics, entropy focus criterion (EFC), spike detection, motion (framewise displacement, FD), noise estimation, and local diffusion consistency (neighboring diffusion correlation, NDC). Paired t-tests and Wilcoxon signed-rank tests were used for statistical comparisons.

The MB2 acquisition demonstrated significantly improved performance across multiple artifact- and noise-related metrics. Compared with noMB, MB2 showed lower framewise displacement (FD mean: 9.21 vs 12.77, p < 0.001), reduced spike artifacts across all spatial directions (all p < 0.001), lower estimated noise levels (sigma_cc and sigma_piesno, p < 0.001), and improved background suppression metrics. MB2 additionally demonstrated consistently higher SNR and foreground-background energy ratio (FBER) values across diffusion shells with all p values below 0.01 (Fig. 1). In contrast, the conventional noMB acquisition demonstrated significantly higher foreground and white matter signal statistics, including foreground mean intensity, median intensity, and white matter signal measures (all p < 0.001). NDC was also significantly higher in noMB acquisitions (0.886 vs 0.822, p = 0.0015). These findings suggest improved preservation of diffusion-related signal characteristics in the non-accelerated acquisition (Fig. 2). Descriptive statistics for all MRIQC output metrics are provided in Supplementary Table S1.

The results demonstrate a trade-off between the two acquisition strategies. MB2 consistently reduces artifact- and noise-related measures, including spike occurrence, motion sensitivity, and background as well as entropy-based metrics, indicating improved image stability and robustness at 3T with a 64 channel head coil. This is consistent with established findings in simultaneous multislice imaging showing that multiband acceleration can improve acquisition efficiency and reduce motion sensitivity (Engel et al., 2024), while introducing noise amplification via g-factor effects and residual slice leakage, particularly at higher acceleration factors (Wu & Miller, 2017). In contrast, the noMB acquisition shows higher values in diffusion-related signal metrics, including foreground and white matter statistics and neighboring diffusion consistency, suggesting better preservation of diffusion signal structure across volumes. This aligns with prior work showing that higher multiband factors may introduce a systematic bias in diffusion metrics (Muftuler et al., 2022). Overall, multiband acceleration improves robustness to artifacts, whereas the non-accelerated approach better preserves diffusion signal fidelity. This reflects the known trade-off between temporal efficiency and quantitative stability in diffusion MRI. Importantly, MB2 already shifts the balance toward improved artifact suppression, while not fully matching noMB diffusion consistency.

Moderate MB2 acceleration substantially improves robustness against motion, noise, and acquisition-related artifacts while increasing apparent SNR. However, conventional single-band acquisition preserves stronger diffusion-related foreground and white matter signal characteristics as well as higher local diffusion consistency. These findings indicate a measurable trade-off between artifact suppression and preservation of diffusion signal structure when using multiband acceleration. For high-motion populations (e.g., pediatrics, patients), MB2's robustness likely dominates. For high-precision quantitative work in cooperative subjects, noMB may still be preferable.
Marco MEIXNER (Bochum, Germany) , Lionel BUTRY , Johanna THOMÄ , Carsten LUKAS , Lara SCHLAFFKE
14:15 - 15:00 #54323 - P238 Reassessing intracellular volume fractions by combining diffusion MRI with relaxation time component analysis.
P238 Reassessing intracellular volume fractions by combining diffusion MRI with relaxation time component analysis.

Fitting diffusion MRI (dMRI) data to biophysical signal models, such as IMPULSED and VERDICT, enables non-invasive analyses of tissue parameters, including intracellular volume fraction (Vin) and cell radius.[1,2] Together, these parameters are linked to cell density, which is recognized as a sensitive non-invasive diagnostic marker for, e.g., tumor progression and malignancy. While IMPULSED and its derivatives do not account for relaxation effects on dMRI signal intensities, VERDICT has been amended to incorporate compartment-specific relaxation times, yielding rVERDICT.[2] Specifically, short and long T2 relaxation times are assigned to signal contributions from extracellular and intracellular compartments, respectively. The accuracy of these dampening factors strongly influences the accuracy of Vin and cellularity. This is exacerbated whenever T2in and T2ex vary, such as during edema, fibrosis, or after contrast agent administration.[3] Consequently, the accuracy of IMPULSED-derived Vin and cell density remains low in specific breast tumor lesions.[4] Here, we implemented a compartment-specific T2 correction to IMPULSED and compared its performance against rVERDICT on densely packed giant unilamellar vesicles (GUVs), modelling a cellular three-compartment structure.

GUVs were prepared in pure water via the hydration method. Their membranes were composed of 10 mg/mL phosphatidylcholine and 1 mol% biotin. Vesicles were condensed into visible patches by adding 5-10 µg/mL streptavidin to the suspension, followed by brief centrifugation. Patches in water were imaged in a Bruker BioSpec Maxwell 94/17 scanner using a 4-element cryoprobe and a 912 mT/m gradient system. We recorded T1 and T2 maps, and the following dMRI schemes: For IMPULSED, we recorded pulsed and oscillating gradient spin-echo sequences with segmented EPI readout (PGSE and cosine OGSE, fOGSE = 50-200 Hz, bmax = 2000 mm²/s). For rVERDICT, we followed a previously described scheme that varies dMRI parameters in combination with TE and TR.[2] All n = 4 GUV samples were imaged with confocal microscopy to enable segmentation of vesicles as ground truth. The multiple components of T2 relaxation times within the GUV patch were determined with non-negative least-squares fitting.[5] The short T2 components were assigned to the extravesicular space, assuming the presence of streptavidin sufficiently reduces T2ex. Long T2 components were assigned to the protein-free intravesicular space (T2in). The IMPULSED signal formula was revised to include these sample-specific T2 components, accounting for different TE in PGSE and OGSE (eq. 1). While rVERDICT already accounts for these effects, its implementation was optimized for GUVs by allowing for T2in>T2ex and fixing T1 to the mean obtained from the T1 map (rVERDICT´´).

Microscopy confirmed highly spherical vesicles with volume-weighted reff = 13±4 µm (fig. 1). T2 component analysis found two distinct components at T2short = 60±15 ms and T2long = 280±31 ms, with T2short accounting for ~20% of the total T2 (fig. 2). The range of T2 times for the short and long components matches the two T2 components found by rVERDICT. Nevertheless, the default implementation assigns these components to the wrong compartments (fig. 3A). Even though vesicle radii were also highly similar between the analysis methods (fig. 3B), the mean Vin obtained by default IMPULSED and rVERDICT were 2-3-fold higher compared to microscopy (fig. 3C). This led to a high inter-sample variation of calculated vesicle densities (fig. 3D). Implementing the proposed T2 corrections compensated for the overestimation of Vin, and the variance of densities was more than three times lower. Vascular volume fractions as the third compartment from rVERDICT and rVERDICT´´ were close to 0% throughout.

Microstructure results for synthetic GUVs are comparable between rIMPULSED and rVERDICT´´, and both are more similar to ground-truth microscopy than their default implementations. Compared to rIMPULSED, rVERDICT´´ benefits from shorter overall scan time and only requires PGSE sequences. Also, rVERDICT´´ does not require separate T2 analysis, as was used here to acquire T2in and T2ex for rIMPULSED, especially since T2 times obtained by relaxation time component analysis and rVERDICT´´ are well comparable. Adding relaxation times had little effect on modelled diffusivities and radii but can improve the accuracy of Vin. Even though both rVERDICT implementations found vascular volume fractions close to zero, the full assessment of relaxation time effects on three-compartment models remains open. The promising results following the simple extension of IMPULSED are encouraging for improving more complex models that, e.g., include transmembrane water exchange.[6]

Accounting for compartment-specific relaxation times improves diffusion-based methods for microstructure analysis. Available models require adaptation to non-biogenic phantoms.
Bastian MAUS (Münster, Germany) , Daniele DI IORIO , Robert VORNHUSEN , Nandan KULKARNI , Seraphine WEGNER , Cornelius FABER
14:15 - 15:00 #54341 - P239 Human-informed white matter microstructural simulations link myelin loss to diffusion metrics.
P239 Human-informed white matter microstructural simulations link myelin loss to diffusion metrics.

Diffusion MRI is sensitive to white matter microstructure, but linking changes in diffusion metrics to specific tissue alterations remains challenging. Existing computational frameworks, such as CACTUS and CATERPillar, can generate dense and complex white matter substrates, including fiber packings and additional cellular components [1,2]. However, matching several human white matter biological constraints within a single healthy reference model remains non-trivial, particularly introducing pathological changes such as demyelination in a controlled way. The corpus callosum (CC) provides a densely packed white matter tract for microstructural modelling. We aimed to build a CC model informed by human axon diameter distributions (Fig. 1), measured fiber dispersion in the human CC and a biologically plausible extra-axonal/extracellular space (ECS) fraction [3-5] (Fig. 2). Demyelination is a well described alteration in neurodegeneration [6], and we used this model to study the effects of demyelination on diffusion metrics in a controlled setting.

A framework was developed for simulating controlled demyelination in the human CC. CACTUS (Computational Axonal Configurator for Tailored and Ultradense Substrates) was adopted to generate densely packed, locally dispersed fiber centerline and healthy myelinated radius, r_outer, configurations [1]. Considering a common WM inner/outer-radius ratio g=r_inner /r_outer = 0.7 [7,8], axonal meshes were generated (Fig. 2a). Different myelination conditions were considered: 1) healthy myelination, 2) reduced myelin thickness T, 3) partial demyelination along the fiber M(s), and 4) combined reduced myelination thickness and partial demyelination. These myelin-loss variants were generated by maintaining r_inner while defining the conditional outer boundary r_condition as: r_condition(s) = r_inner +α(s) [r_outer - r_inner] where s denotes the arc-length position along the fiber and α(s)=T×M(s), where T is radial myelin thickness retention and M(s) is the arc-length binary coverage operator. T ranges from 0 to 1 to indicate the relative proportion of the retained healthy myelin thickness. Monte Carlo diffusion simulations were run in the intra-axonal space [9], which was kept constant across simulations, and in the changing extra-axonal space of each myelin-loss configuration. Two diffusion readouts were then computed. First, trajectory-derived DTI metrics were obtained directly from the simulated walker coordinates by calculating the displacement covariance at Δ=30 ms and subsequently extracting RD, FA and related metrics. Second, a clinical-style DTI analysis was emulated by synthesizing pulsed gradient spin echo (PGSE) diffusion signals in 30 gradient directions, combining the intra- and extra-axonal signal contributions according to their mobile-water volume fractions, and fitting the diffusion tensor as in standard DTI analysis. Clinical-style DTI was simulated with b=1000 s/mm², δ=15 ms and Δ=30 ms.

The healthy substrate consisted of 38% intra-axonal space, 39% myelin-related volume and 23% extra-axonal space, consistent with reported ECS estimates in brain tissue [5]. Across reduced thickness only, reduced coverage only and combined myelin-loss conditions, decreasing myelin amount resulted in a consistent increase in radial diffusivity (RD) and a decrease in FA (Fig. 3, Table 1). In trajectory-derived metrics, RD increased from 0.28 µm²/ms in the healthy condition to 1.20 µm²/ms in the most severe combined condition, while FA decreased from 0.87 to 0.47. Clinical-style DTI maintained the same trend: RD increased from 0.21 to 0.80 µm²/ms, while FA decreased from 0.92 to 0.66. Thickness-reduction-only and coverage-reduction-only changes showed comparable monotonic behavior, whereas combined alterations produced the largest RD increases and FA decreases relative to healthy.

These results suggest that, in a human-informed white matter geometry, progressive myelin loss can produce DTI alterations consistent with demyelination-like changes, especially increased RD and reduced FA. The smaller changes observed with clinical-style DTI suggest that PGSE signal formation, intra-/extra-axonal signal mixing and single-tensor fitting attenuate the direct displacement-covariance response. Nevertheless, the RD/FA trends remained detectable, indicating that the myelin-loss effect was reduced but not removed by a clinically realistic DTI pipeline.

With our biologically informed white matter simulations, we show a monotonic relation between myelin loss and increased RD and reduced FA. Our framework provides a practical platform to investigate how microstructural changes may contribute to DTI alterations observed in neurodegeneration.
Alessandro DI MATTEO (Amsterdam, The Netherlands) , Laura JONKMAN , Hugo VRENKEN , Oliver GURNEY-CHAMPION , Matthan CAAN
14:15 - 15:00 #54521 - P240 Exact PGSE Signal Model for Diffusion Confined to Cylindrical Surfaces.
P240 Exact PGSE Signal Model for Diffusion Confined to Cylindrical Surfaces.

Diffusion confined to cylindrical surfaces has been proposed as a model for myelin water diffusion in white matter [1,2]. Existing analytical PGSE descriptions for this geometry rely on the narrow-pulse limit, approximate finite-pulse corrections, or Gaussian-phase approximations [1,2], which can lose accuracy at high diffusion MRI (dMRI) weighting or larger radii [1]. An exact finite-pulse formulation is therefore needed both to clarify the validity range of existing approximations and to enable accurate model evaluations in quantitative applications. We derive an exact analytical PGSE dMRI signal model under finite rectangular gradient pulses and develop practical numerical approximations to accelerate its evaluation.

Starting from the Bloch–Torrey equation, the net magnetization was expanded in eigenfunctions of the Laplace operator [3,4] on the cylindrical surface, yielding an exact finite-pulse PGSE signal formulation [6]. For arbitrary gradient orientations, the dMRI signal factorizes into an unrestricted axial Gaussian signal term and a confined angular term represented by three non-commuting matrix exponentials (see Eq. [1] in the List of equations). This formulation avoids approximations to either the diffusion propagator or the spin phase distribution. Cylinder symmetry was exploited to construct a reduced real spectral basis. The exact dMRI signal was validated against Monte Carlo diffusion simulations [5] for 50 cylinders with radii r=0.1–5.0 μm, diffusivity D=0.8 μm2/ms, six b-values of 1–6 ms/μm2, and a PGSE sequence with trapezoidal gradients with G=500 mT/m. Analytical and Monte Carlo spherical means were computed using Voronoi-weighted averaging over 92 diffusion-encoding directions. To assess suitability for repeated model evaluations, we also quantified runtime–accuracy trade-offs for spectral truncation order (M), Strang splitting steps (p) [7] (see Eq. [2] in the List of equations), and Gauss–Legendre angular quadrature nodes (nq) (see Eq. [3] in the List of equations).

The exact dMRI model predicts radius-dependent signal features and diffraction-like oscillations that are not captured by the spherical-mean Gaussian Phase Approximation (GPA) in stronger diffusion-weighting regimes (see Figure 1). Consistently, GPA errors increased markedly with b-value in the numerical benchmark, with mean relative absolute errors (MRAE) of 3.05%, 14.6%, and 60.0% for b=3, 6, and 20 ms/μm2, respectively (see Figure 3). Analytical signals were in close agreement with Monte Carlo simulations across all radii and b-values considered (see Figure 2). For the benchmark protocol, M=10 spectral modes reproduced the reference signal generated with M=50 at high numerical accuracy, while reducing the runtime from 111.0 to 12.5 ms (see Figure 3). A Strang approximation with p=20 yielded MRAE ≤0.135% for b=20 ms/μm2 and a 9.7-fold speed-up (Figure 3). Gauss–Legendre quadrature with five nodes reduced spherical-mean evaluation cost by 17.9-fold with MRAE ≤0.5867% relative to a 92-direction Voronoi-weighted average (Figure 3). With compiled routines, a representative accelerated implementation reached 0.031 ms per radius and b-value, approaching the GPA runtime of 0.023 ms while retaining substantially smaller approximation errors over the same benchmark (Figure 3).

The proposed exact signal dMRI expression extends closed-form finite-pulse treatments of restricted diffusion to cylindrical surfaces, and clarifies regimes in which approximate models may fail. Beyond providing a reference solution, the formulation supports efficient computation of both directional and spherical-mean signals, which are relevant for model fitting, protocol studies, and simulation-based analyses. The reduced-basis and accelerated implementations make the formulation suitable for repeated evaluations in fitting and simulation studies. The exact derivation assumes ideal infinitely long cylindrical surfaces and rectangular gradient pulses; nevertheless, trapezoidal-gradient Monte Carlo tests showed excellent agreement under the acquisition regime considered.

We provide an exact, validated, and computationally tractable PGSE dMRI signal model for diffusion confined to cylindrical surfaces, establishing a rigorous foundation for future myelin-water diffusion MRI modeling and quantitative microstructure applications.
Erick Jorge CANALES-RODRÍGUEZ (Granada, Spain) , Chantal M.W. TAX , Juan Manuel GÓRRIZ , Derek K. JONES , Jean-Philippe THIRAN , Jonathan RAFAEL-PATIÑO
14:15 - 15:00 #54595 - P241 Characterizating spatiotemporal drift in Mean Diffusivity in Human and Phantom data.
P241 Characterizating spatiotemporal drift in Mean Diffusivity in Human and Phantom data.

Diffusion-weighted magnetic resonance imaging (DWI) enables the characterization of microstructural architecture of biological tissue on sub-voxel resolution [ref] based on (hindered) diffusion of water molecules. Nevertheless, just as any other contrast, DWI MRI is susceptible to both physiological confounds [1,2] and acquisition-related artifacts [3-6], which may be challenging to disentangle and potentially limit reproducibility. In this study signal variations during repeated in vivo acquisitions are presented that cannot be corrected for with established signal drift correction [4,7,8]. Complementary acquisitions in model solutions (phantoms) relate the observed signal alterations to the scanner’s usage history.

In vivo: 43 subjects (21 females, 18–35 years, approved by local ethics committee with written informed consent obtained) completed two MRI sessions on the same afternoon, with a two-hour gap in between. Whenever possible, two participants were scheduled for the same afternoon, with their two sessions interleaved. Data were collected on a 3T MR scanner [9] using vendor-provided tfl and GRE sequences as well as an established SE SMS EPI for DWI [10]. The detailed acquisition parameters can be found at [15]. Complex-valued data were denoised and Gibbs’ ringing suppressed [11]. Then, susceptibility distortion, eddy-current, and motion correction [12] were applied, as well as signal drift correction [13]. Mean diffusivity (MD) was computed [12] and transformed to 2-mm MNI space [14] then smoothed with a 6-mm FWHM Gaussian kernel [12]. Voxel-wise GLM analyses [12] were performed to assess differences between the first and second session (Fig. 1) across all data as well as in subsamples selected by scanner workload. Phantoms: DWI, B0 and B1+ maps were acquired on a head-shaped phantom ( agar-agar) to characterize scanner-induced signal drift under controlled conditions. N=9 measurements were acquired per condition: 1.) the scanner idling for several hours prior to acquisition (Idle) and 2.) following at least 1.5 h of continuous DWI scanning (running) carried out on a different phantom to avoid effects due to heating of the phantom. DWI were processed the same way as the in vivo data and dB0/B1+ maps were calculated using in-house written Matlab [16] scripts including [17]. Effects of scanner usage were assessed by comparing: ΔB0/B1 maps, flip angle, global signals of b=0 and b=1000 volumes, as well as MD, across sessions. Additionally, three ROIs were manually defined in anterior, middle and posterior regions of the phantom to investigate potential spatial patterns of signal alterations.

A voxel-wise analysis of in vivo data revealed a significant, session-related decrease MD (FDR-corrected, α < .05), localized to occipital and parietal regions (Fig. 1) when grouped according to scanner history ('Running' vs. 'Idle') in order to investigate session-to-session drift. Termed ‘running’ if the scanner was running before or between sessions. Between-session comparisons revealed a significant decrease in MD exclusively under ‘running’ in session 2. Phantom data showed no significant difference in global MD (Fig. 2), signal intensity, ΔB0, B1 maps and flip angle between conditions (Fig. 3). Nevertheless, a mixed ANOVA was carried out to test for spatial drift. It revealed a significant main effect of scanner state on MD (F(1,16)= 5.15, p = .037), with lower values observed in the mid and posterior regions (Fig. 2). There was a non-significant increase in signal intensity at b=1000 under 'running' conditions (F (1,16)= .85, p = .369), absent on b=0 (F(1,16)= .003, p = .959). ΔB0 maps showed a significant ROI-dependent effect of scanner state (F(2,32)= 65.90, p < .0001, Fig. 3) as well as B1 maps showed a non-significant ROI–scanner state interaction (F(2, 30)= 2.54, p =.0955).

A spatiotemporal decrease in MD was observed in vivo exclusively under running conditions, which is consistent with scanner hardware drift during prolonged acquisitions [4, 7-8, 13]. Phantom data partially point at hardware as origin: global MD decreased under running conditions, mirroring the trend in vivo, alongside a non-significant decline in flip angle but increased b = 1000 signal intensity suggesting possible gradient amplitude variation. However, ROI analyses yielded no significant scanner state effects for ΔB0, B1 or flip-angle. Nevertheless, both ΔB0 and B1 maps showed a appreciable ROI–scanner workload interaction , consistent with a spatially dependent drift potentially driven by scanner state and history. The overall absence of a clear spatial pattern in the phantom scans suggests that its homogeneous composition does not fully mimic the complexity of in vivo signals.

We identified significant scanner-induced inter-session drift in DWI. However, phantom data did not fully reproduce the spatiotemporal pattern observed in humans, suggesting that in vivo effects may involve additional physiological contributions.
Manfredi ALBERTI (Tübingen, Germany) , Sebastian MUELLER , Marius KREIS , Svenja BRODT
14:15 - 15:00 #54710 - P242 Effect of Effective Frequency Definition on Surface-to-Volume Ratio Estimation from Oscillating Gradient Diffusion MRI.
P242 Effect of Effective Frequency Definition on Surface-to-Volume Ratio Estimation from Oscillating Gradient Diffusion MRI.

Oscillating Gradient Spin Echo (OGSE) diffusion MRI enables probing short effective diffusion times, increasing sensitivity to smaller structures compared with Pulsed Gradient Spin Echo (PGSE) [1,2,3]. In the short time limit, the frequency dependent diffusion coefficient D(ω) is dependent on the surface-to-volume ratio (SVR) [6,7,12] (Eq.1), where D0 is the intrinsic diffusivity and ω the oscillation-frequency. Practical and finite OGSE waveforms, however, have a broader power spectrum, requiring the extraction of an effective frequency. Previous work has applied a correction factor to SVR estimates accounting for imperfect waveform-shapes [4,5]; yet the choice of the effective frequency has not been systematically evaluated. This work systematically compares different strategies of computing the effective frequency from the power spectrum on SVR estimation against incorporation of the whole spectrum in synthetic experiments.

Simulations: Synthetic diffusion weighted signals were generated using the short-time limit formula, where D(ω) varies linearly with 1/√ ω assuming no higher-order contributions, under the Gaussian phase approximation (Eq.2) Signals were simulated for experimentally measured cosine OGSE gradient waveforms used in previous work [16] at six peak frequencies (115 – 404Hz, b = 0.526 ms/um^2, 3 T/m gradient strength, 30k T/m/s slew rate), for eight ground truth (GT) SVR = 1.5, 1.25, 1.0, 0.8, 0.6, 0.45, 0.3, 0.15 um^-1) with intrinsic diffusivity D0 = 2.0 um^2/ms and volume fraction f = 0.5. Simulations: Synthetic diffusion weighted signals were generated using the short-time limit formula, where D(ω) varies linearly with 1/√ ω assuming no higher-order contributions, under the Gaussian phase approximation (Eq.2) Signals were simulated for experimentally measured cosine OGSE gradient waveforms used in previous work [10] at six peak frequencies (115 – 404Hz, b = 0.526 ms/um^2, 3 T/m gradient strength, 30k T/m/s slew rate), for eight ground truth (GT) SVR = 1.5, 1.25, 1.0, 0.8, 0.6, 0.45, 0.3, 0.15 um^-1) with intrinsic diffusivity D0 = 2.0 um^2/ms and volume fraction f = 0.5. To assess noise robustness, Gaussian noise was added to all signals at two SNR levels (SNR = 50 and SNR = 30), defined relative to the highest signal. Estimation: Four approaches for mapping the encoding power spectrum |q(ω)|^2 to an effective frequency were compared against full spectral integration as in Eq. 2 (Fig.1): peak frequency, power weighted mean frequency, power-weighted median frequency, and SVR-weighted frequency ω_SVR, defined as in Eq.3 (Fig.1). This is motivated by the SVR sensitive part of the signal depending on the spectral integral ∫|q(ω)|^2 ω^(−1/2) dω, which is nonlinear in ω. All methods fitted [D0, SVR] using nonlinear least squares.

The four strategies produced different effective frequencies for all five gradient waveforms (Fig.2), with ω_SVR shifted to lower frequencies than peak, mean, and median, in alignment with the ω^-1/2 weighting of the surface term amplifying low frequency contributions. Under noiseless conditions (Fig.3), full spectral integration recovered SVR with relative errors below 2% and D0 relative error ≤ 0.5% for all ground truth values, confirming consistency of the forward model. Between the effective frequencies, median frequency performed best for SVR estimation (errors within ±5% for SVR ≥ 0.5 um^-1), while ω_SVR showed comparable SVR accuracy at mid-range SVR values but a systematic D0 overestimation of up to +8% at high SVR. Mean frequency overestimated SVR at low SVR values (+13%) and overestimated D0 across all conditions (+2 to +4%). Peak frequency underestimated both SVR (−5 to −10%) and D0 (−1 to −5%) with errors increasing at high SVR, consistent with its lack of sensitivity to the ω^−1/2 weighting of the surface term. After adding noise (Fig.4), full spectral integration remained the most robust, with negligible bias and narrow range bands at both SNR levels. All frequency-extraction methods showed increased error and variance at low SVR (≤ 0.3 um^-1), with larger deviations at SNR = 30 than SNR = 50. The D0 noise results presented the same patterns as the noiseless estimations, with ω_SVR showing the largest D0 overestimation.

SVR and D0 estimates depend on the extraction of the effective frequency. Full spectral integration of the OGSE power spectrum provides the most accurate SVR estimation, followed by the power weighted median frequency. Peak and mean frequency assumptions introduce systematic biases that grow with decreasing SVR. Future work should evaluate this in more realistic simulations - e.g. incorporating Monte-Carlo simulations in 3D digital substrates and surface relaxation - and for a broader range of waveforms. Optimizing OGSE waveforms [12] can further reduce the contribution of frequency-spectrum side lobes and as such further reduce the effect of effective-frequency extraction method.
Maria Paula DEL POPOLO (Utrecht, The Netherlands) , Tatiana NIKOLAEVA , Chantal TAX
14:15 - 15:00 #54274 - P243 Joint diffusion-relaxometry of the brain via multi-echo spin-echo diffusion EPI.
P243 Joint diffusion-relaxometry of the brain via multi-echo spin-echo diffusion EPI.

Joint mapping of diffusion and T2 relaxation provides complementary tissue microstructure information relevant to neurological applications [1]. Existing simultaneous diffusion-relaxometry methods predominantly sample multiple gradient echoes, yielding T2* rather than T2 and remaining sensitive to B0 inhomogeneity and susceptibility effects [2]. A multi-echo spin-echo (MSE) diffusion echo planar imaging (EPI) readout gives access to T2 within a single TR. We present an open-source PyPulseq [3] MSE diffusion EPI sequence (Fig 1) that jointly encodes diffusion and T2 in a single TR, extending previous work on single spin-echo diffusion EPI [4], aiming at a clinically feasible joint qMRI protocol.

The sequence consists of one excitation followed by three slice-selective refocusing pulses, each paired with an EPI readout at TE1, TE2 and TE3. Diffusion weighting is applied once around the first refocusing pulse, with all three echoes sharing the same b-value. To minimize readout time, ramp sampling is employed and MRI-NUFFT [5] used for k-space reconstruction. The first readout uses partial Fourier to accommodate the diffusion gradients, while the subsequent readouts sample the full k-space. Blip-up (TE1 and TE3) and blip-down (TE2) phase-encoding polarities were implemented to enable B0 field estimation and TOPUP-based distortion correction [6,7]. Six diffusion directions (adapted from MRtrix3 [8]) were sampled for 20 b-values and 54 echo times spanning 65 to 266 ms across the three TE bands, with acquisition parameters: FOV 224 mm, resolution 2.33 mm isotropic (96x96 matrix), TR 5 s, on a system with max gradient amplitude 38 mT/m and max slew rate 180 T/m/s at 3T. Pairwise orthogonal crushers were employed to suppress stimulated and indirect echo pathways [9]. Validation was performed in MR0 [10] on a BrainWeb [11] digital brain phantom, with and without simulated Rician noise aiming for an SNR of 10 in white matter for non-diffusion-weighted images with TE= 100 ms, fitting the diffusion coefficient (D) and T2 voxel-wise via non-linear least-squares (NLLS) fitting to mono-exponential models. The methodology is summarized in Fig 2. The sequence was exported and executed on a Siemens VIDA 3T scanner, confirming hardware compatibility.

The opposing-polarity echoes acquired within each TR enabled TOPUP-based B0 field estimation and distortion correction, which visibly reduced geometric distortion in the MSE images across all three echo times (Fig 3). T2 and ADC maps were estimated and evaluated against the BrainWeb reference with and without applying image distortion-correction prior to the fitting (Fig 4),. In WM and GM, T2 and ADC estimates agreed closely with the reference across all conditions (Fig 3). A notable dimming of the central CSF compartment is visible in the MSE T2 maps (Fig 4), consistent with quantitative T2 underestimation in CSF, the compartment showing the largest deviation from reference (Fig 3). This CSF-specific penalty is consistent with stimulated echo contamination, which disproportionately affects long-T2 compartments. ADC estimates remained robust across conditions and tissue types, suggesting that stimulated echoes bias the T2 decay fitting but leave the diffusion-weighted signal decay largely unaffected.

The MSE EPI sequence achieves joint, co-registered diffusion and T2 maps in a single TR. ADC and T2 were accurate and stable across noise and distortion-correction conditions in WM and GM, with the accuracy penalty confined to CSF, consistent with stimulated echo contamination in long-T2 compartments. Because signal is read out with EPI, T2-weighting at each echo is additionally modulated by T2* decay across the readout train, so the reported T2 maps reflect a T2/T2* mixture rather than isolated T2. Pairwise orthogonal crusher gradients were employed but their suppression efficacy could not be fully verified in simulation, motivating future Extended Phase Graph-based modelling of the refocusing train [12,13] and real-scanner validation on physical phantoms which include multiple compartments where joint T2, where stimulated echo suppression and T2 fitting compensation can be properly assessed. Open-source implementation lowers the barrier for adoption, enabling systematic optimization and reproducible benchmarking across sites.

An MSE diffusion EPI sequence implemented in open-source PyPulseq [3] enables joint, co-registered ADC and T2 mapping in a single TR. Validation against a BrainWeb reference confirms accurate ADC and T2 estimation in WM and GM, with accuracy penalties confined to CSF and attributed to stimulated echo contamination inherent to multi-refocusing acquisitions. Blip-up/blip-down acquisition supports TOPUP distortion correction within the same protocol.
Aron GIMESI (Lisboa, Portugal) , Joao PERIQUITO , Guanqun LIU , Andreia S GASPAR , Rita NUNES
14:15 - 15:00 #54362 - P244 Deep Learning Synthesis of Diffusion Gradient Directions for Accelerated Diffusion Tensor Imaging.
P244 Deep Learning Synthesis of Diffusion Gradient Directions for Accelerated Diffusion Tensor Imaging.

Diffusion Tensor Imaging (DTI) is a widely used MRI modality in neuroradiology that extends conventional Diffusion-Weighted Imaging (DWI) by modelling water diffusion as a symmetric 3x3 tensor. This allows to measure various scalar quantities that estimate tissue integrity including Fractional Anisotropy (FA) and Mean Diffusivity (MD), important markers of neurological pathologies such as ischemic stroke, white matter disease and brain tumours, among others [1,2]. However, tensor estimation requires sampling along six non-collinear gradient directions: robust clinical and research protocols typically employ dozens [3,4]. This results in long acquisition times, increasing risk of motion artifacts, particularly in paediatric populations or patients with movement disorders [5]. This work investigates whether a conditional Generative Adversarial Network (cGAN) can reconstruct subsampled diffusion gradient directions from angular neighbours on the diffusion sphere, reducing acquisition time while faithfully preserving downstream diffusion metrics.

Fifty-eight patients with essential tremor undergoing deep brain stimulation were scanned at 3T (GE Premier, 21-channel head-neck coil) with a single-shell DTI protocol (30 directions, b = 1000 s/mm², TR/TE = 6200/70 ms, 1.8 mm isotropic voxels, one b0 volume). Diffusion images were preprocessed with FSL [6]: topup [7] and eddy [8] corrected susceptibility and eddy-current distortions, bet [9] performed brain extraction, and dtifit [6] estimated FA and MD maps. T1-weighted MPRAGE images (1 mm isotropic) provided anatomical reference for ROI definition. Patients were split 40/11/7 for training, validation, and testing, with the test set fully held out. A 2D Pix2Pix cGAN [10] was trained to synthesise each missing direction from its two nearest angular neighbours and the b0 (3-channel input, 128x128 px). The generator follows a U-Net [11] architecture with seven encoder-decoder levels and skip connections; the discriminator is a PatchGAN that classifies overlapping local patches, enforcing high-frequency realism. Slices were treated independently to maximise dataset size. The objective combined an adversarial loss and an L1 reconstruction term (lambda = 100), optimised with Adam (beta1 = 0.5, beta2 = 0.999). Hyperparameters were selected via the hyperopt library. Performance was quantified with Peak Signal-to-Noise Ratio and Structural Similarity Index Measure, and by comparing FA and MD in five ROIs spanning distinct diffusion regimes: Lentiform Nucleus and Thalamus (mixed grey/white matter) and PLIC, PTR, and SCC (highly anisotropic white matter tracts) [12]. Statistical analysis was performed by conducting Shapiro-Wilk and paired t-tests. The effect size of the identified statistical differences was measured by calculating Cohen's d.

On the 7 patients belonging to the test set, the model achieved SSIM = 0.94 ± 0.03 and PSNR = 29.36 ± 6.26 dB. Shapiro-Wilk confirmed normality in all ROIs. For FA, no significant differences were found in the Lentiform Nucleus (p = 0.071) or Thalamus (p = 0.055); significant differences arose in PLIC (p = 0.010, d = 0.177), PTR (p = 0.006, d = 0.157), and SCC (p = 0.003, d = 0.181). For MD, no significant differences were found in the Lentiform Nucleus (p = 0.058), PLIC (p = 0.071), or Thalamus (p = 0.170); significant differences arose in PTR (p = 0.002, d = 0.067) and SCC (p = 0.015, d = 0.104). In all cases where significance was reached, Cohen's d remained below 0.2, indicating negligible practical effect.

The model demonstrated high fidelity in both image quality and preservation of diffusion-derived metrics across all five ROIs. The statistically significant p-values observed in PLIC, PTR, and SCC for FA — and PTR, SCC for MD — are expected given the sensitivity of the paired test design with per-patient repeated measures; the corresponding Cohen's d values (all < 0.2) confirm these differences carry no clinical significance. The choice to treat slices independently increases training data volume and reduces computation, but sacrifices inter-slice coherence; future 3D architectures could address this limitation. The approach was validated on a single-shell protocol with 30 directions; extension to multi-shell acquisitions used in advanced diffusion models (NODDI, DKI) represents a natural next step.

A Pix2Pix cGAN can reliably synthesise missing DTI gradient directions from reduced acquisitions, achieving high image quality (SSIM = 0.94) and preserving FA and MD with negligible distortion across five clinically relevant brain ROIs. The results support the feasibility of deep learning-based acquisition acceleration for DTI, with potential to broaden access to high-angular-resolution protocols in time-constrained clinical settings.
Simone SANTORO (Bologna, Italy) , Mattia RICCHI , Leonardo BRIZI , Alexander GREEN , John ERAIFEJ , Amir Divanbeighi ZAND , Claudia TESTA , James GRIST
14:15 - 15:00 #54565 - P245 Probabilistic DL approaches in Diffusion-Relaxation MRI model fitting: Comparison Of Mixture Density Networks and Normalizing Flows.
P245 Probabilistic DL approaches in Diffusion-Relaxation MRI model fitting: Comparison Of Mixture Density Networks and Normalizing Flows.

Deep neural networks (DNNs) have become a strong alternative to standard diffusion MRI parameter fitting methods [1], but most approaches provide only point estimates and ignore uncertainty quantification (UQ), which is crucial for clinical translation. Probabilistic neural networks based on normalizing flows (NFs), such as μguide [2], have recently been proposed, although their UQ performance has not yet been systematically evaluated. Similarly, Mixture Density Networks (MDNs) [3] have been introduced for IVIM fitting [4], but more extensive assessments of UQ methods for different microstructure imaging applications are needed. Motivated by the need to promote probabilistic approaches, this work evaluates μguide and MDNs, assessing whether they can achieve accuracies comparable to point-DNNs while providing UQ. Experiments were conducted across three diffusion-relaxation models for skeletal muscle characterization [5] using both simulated and in vivo data.

We consider diffusion-relaxation models describing the MRI signal as a weighted sum of two isotropic compartments (“Ball”) [6]. The Ball–Ball–T₂ [7] model is given by Eq.1. Where f_v is the fraction of vascular compartment, D_t the diffusion in tissue, D_v the pseudo-diffusion coefficient, T_2v and T_2t the T_2 relaxation times of vessels and tissue respectively. To model anisotropy, the Ball compartment can be replaced with a Zeppelin (Eq.2). Where g_k is the unit vector for the kth diffusion-sensitizing gradient and D is a cylindrically symmetric diffusion tensor, with the principal eigenvector defined by angles θ and ϕ. We considered a Ball-Ball T2 (B-B), a Ball-Zeppelin-T2 (B-Z) and a Zeppelin-Zeppelin-T2 (Z-Z) model. We trained the networks on 200,000 simulated diffusion MRI signals (with additionally 40,000 test samples) generated using the parameter ranges in Table 1 and in vivo b-values and gradient directions. Rician noise was added with SNR uniformly sampled from 1–200 for training and fixed at 25 for testing. For in vivo data, diffusion–T₂ acquisitions of the lower legs from five healthy volunteers were used, combining 6 b-values and 4 echo times. Six diffusion directions were acquired per b–TE combination, resulting in 144 diffusion-weighted images per scan (plus the b0 at each TE, for a total of 148) [5]. We implemented three networks: a point-MLP, MDN, and a NF model (uguide_opt). For B-B, inputs consisted of 28 features (averaged diffusion directions) with 5 outputs, while B–Z and Z–Z used 148 inputs with 8 and 9 outputs, respectively. Hyperparameters were optimized using Optuna over 40 trials [8]. MLP search space included hidden size (32–512), dropout (0–0.2), number of layers (1–6), and learning rate (1e-5-1e-4). MDN additionally tuned mixture components (2–20), while uguide_opt optimized number of transform layers (3–5), hidden dimensions, and context size (32–128). Models were trained with 5-fold cross-validation forming 5-member ensembles [9] using Adam (batch size 128) with early stopping on an RTX 3070Ti. MLP used MSE loss, while MDN and μguide_opt used negative log-likelihood. Inference used 1000 samples per ensemble member (5000 total), with median predictions and 90% confidence intervals (0.05–0.95 quantiles). Performance was evaluated using Spearman’s ρ, miscalibration area, and CRPS [10], where lower CRPS indicates better UQ.

Total training (including tuning) took 47 h for MLP, 71 h for MDN and 283 h for uguide_opt. Fig. 1 shows scatter plots across all diffusion models, indicating strong agreement between methods, with comparable Spearman’s ρ values and differences generally below 0.03. MDN had better ρ in x,y and z estimation, whereas uguide_opt was better in fv from Z-Z. Results for UQ metrics (Table 2) were mixed: uguide_opt was better calibrated for T_2t, while MDN showed better calibration for D_v, x, y, z and slightly for T_2v. CRPS differences were negligible. Fig.2 presents in vivo leg muscle predictions using the B–B model, highlighting as expected high uncertainty in D_v and T_2v, which are most sensitive to noise. Maps and uncertainty were similar among the networks, with MDN showing more uncertainty in T_2t.

We implemented two probabilistic methods for fitting biophysical models, applied to simulated and in vivo muscle data, and compared them to a point-MLP reference. Both approaches showed minor differences in accuracy and UQ metrics, with accuracy in agreement with the MLP. MDN performed slightly better for angular parameters, while uguide_opt was marginally better for f_v in the Z–Z case. In vivo parameter maps were highly similar between methods. Despite similar performance, MDN trained 4× faster, suggesting it is an efficient alternative to the more complex NF approach.

In conclusion, MDN and uguide_opt achieved comparable accuracy and UQ in diffusion-relaxation MRI models, with only minor differences. However, MDN was substantially more computationally efficient, providing similar performance with markedly faster training.
Nicola CASALI (Milan, Italy) , Paddy J. SLATOR , Matteo FIGINI , Giovanna RIZZO , Giuseppe BASELLI , Alessandro BRUSAFERRI , Alfonso MASTROPIETRO
Palau Sira
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15:30

"Thursday 01 October"

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A14
15:30 - 17:00

FT1-4 - Fair Data, Fair Care

FT Society
15:30 - 16:00 Making MRI Matter for Everyone: Accessible Imaging for Equitable Care. Esther WARNERT (Keynote Speaker, The Netherlands)
16:00 - 16:30 MRI for the People, by the People. Nikola STIKOV (Keynote Speaker, Montreal, Canada)
16:30 - 17:00 How AI Reshapes the Imaging Team. Luis MARTI-BONMATI (Keynote Speaker, Spain)
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"Thursday 01 October"

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B14
15:30 - 17:00

OB1-1 Scientific session
Quantitative Susceptibility Biomarkers: From Myelin Physics to Clinical Detection

15:30 - 15:42 #53579 - PG007 Myelin membrane undulations revealed by temperature-dependent dipolar order solid-state NMR relaxation.
PG007 Myelin membrane undulations revealed by temperature-dependent dipolar order solid-state NMR relaxation.

Magnetic resonance imaging (MRI) techniques that exploit dipolar order-related contrasts, such as inhomogeneous magnetization transfer (ihMT) [1,2], show promise for monitoring de-/remyelination processes [3,4]. A pivotal factor influencing the ihMT contrast is the difference in dipolar order relaxation time(s) (T1D) between tissue’s constituents. In particular, myelin’s ‘long’ T1D inherits a promising application potential, however, the lack of understanding of dipolar relaxation in biologically relevant systems prevents thorough interpretation of the resulting contrasts. The impact of membrane dynamics [5], i.e., the ensemble of motional processes occurring at different spatio–temporal scales, on T1D-relaxation remains largely unknown. Myelin membranes are primarily composed of lipids in a lamellar liquid-ordered state [6] characterized by a well-known motional landscape [7,8]. Using a ‘refocused’ Jeener–Broekaert (JB) sequence, we analyse the temperature-dependence of T1D-relaxation by detecting the non-aqueous proton signal in liposomes that mimic myelin lipid membranes [9-11]. The aims are two-fold: To decipher the membrane motional processes driven T1D-relaxation and to elucidate the influence of prominent membrane constituents such as phospholipids (POPC), cholesterol (CHOL), cerebrosides (CER) and Myelin Basic Protein (MBP) on T1D-relaxation.

Sample preparation: Multi-lamellar vesicles (MLV) (Fig. 1) were prepared according to an established procedure [12,13]. (1) Lipids (POPC, POPC-CHOL (molar ratio of 0.6/0.4), POPC-CHOL-CER (0.4/0.4/0.2) / + MBP) were dissolved in CHCl3 (evaporated, water added, freeze-dried); (2) resulting powders were hydrated with D2O (hydration ~80% (w/w)) and underwent three freeze-thaw cycles; (3) Lipid dispersions were transferred into a 4-mm MAS-NMR rotor. NMR measurements: Acquisitions were performed on a solid-state Bruker Avance III 500 MHz spectrometer. To quantify T1D(s), a chemical-shift refocused JB sequence (Fig. 2) was conducted at different temperatures (273 K to 315 K) [11]. Briefly, the sequence comprises a pair of phase-shifted RF pulses that partly transfer Zeeman into dipolar order. The unwanted off-resonance signal contributions from ‘mobile spins’ are reduced by a 180° RF pulse (Fig. 2). Analysis: Raw data files were pre-processed using MATLAB routines (Fig. 2). JB signal decays were obtained by integrating the positive lobe of the ‘anti-phase like’ spectra measured at different evolution times τ. Two decay functions were utilized to model the non-monoexponential JB signal decays: A sum of n=3 exponentials and a sum of two modified stretched exponential functions (Fig. 2). Evolution times τ shorter than τ<200 μs were not considered, since a time τ~T2 is required to establish a novel internal equilibrium state. An ‘effective’ dipolar order decay time was calculated and used for the activation energy analysis of R1D by a simple physical model (encompassing only two distinct statistically independent motional contributions and assuming that each type of motion can be characterized by an ‘effective correlation time’ τc, details in Fig. 4)

MLVs of pure POPC exhibit a different temperature trend compared to the other lipid model membranes (Fig. 3). While POPC shows a maximum of the effective of ≈23 ms in the vicinity of 295K, the cholesterol containing liposomes (‘liquid-ordered phase’, LO) exhibit a roughly linear trend of as a function of temperature. In the LO-phase, an increase of for higher temperatures could be observed. Consequently, the longest T1Ds are obtained for the highest temperature (315 K) with values of about 30 ms for POPC-CHOL, less than 10 ms for POPC-CHOL-CER and about 25 ms for POPC-CHOL-CER+MBP.

The analysis yielded two markedly different activation energies and correlation times (Fig. 4): Motion ‘1’ with lower a Ea^1 (~15–25 kJ/mol) and longer τc^1 (10-5 to 10-3 s), and motion ‘2’ with higher Ea^2 (of 40–80 kJ/mol) and shorter τc^2 (10-9 to 10-7 s). According to the motional landscape for lipid model membranes [7,8], motion ‘1’ can be assigned to collective motions, i.e., membrane undulations (hydrodynamic µm-scale deformation) of the entire lipid membrane, whereas motion ‘2’ reflects intermolecular motions, i.e., motion of the lipid molecules as a whole (nm-scale). Within the biologically relevant temperature range (20–40°C), slow collective motions are the primary contributor to T1D-relaxation in all myelin model systems.

Our results indicate that dipolar relaxation is highly sensitive to the chemical composition of myelin membrane models. Slow collective motions are the main drivers of T1D-relaxation (within 20–40°C). The presence of MBP strongly attenuates membrane undulations, thereby slowing down T1D-relaxation. This opens up new perspectives for characterising alterations in myelin-related neurodegenerative diseases and should lead to major advances in using T1D-weighted contrast for myelinated tissues in MRI.
Niklas WALLSTEIN (Marseille) , Axelle GRÉLARD , Olivier M. GIRARD , Antoine LOQUET , Guillaume DUHAMEL , Erick DUFOURC
15:42 - 15:54 #54503 - PG008 Revealing the myelin-induced magnetic field correlation modulated by white matter tract orientation at ultra-high field.
PG008 Revealing the myelin-induced magnetic field correlation modulated by white matter tract orientation at ultra-high field.

Magnetic field correlation imaging (MFCi) quantifies microscopic magnetic field inhomogeneities arising from magnetic susceptibility variations in tissue [1,2,3]. MFC is defined as the variance of local B0 perturbations, and can be expressed through the autocorrelation (e.q 1), where B(t) represents the local magnetic field experienced by diffusing spins at time t [4]. In white matter (WM) myelinated axons induce an anisotropic local frequency shift due to the radially oriented lipid bilayers around the axis of axons. This frequency shift scales as sin²(θ), where θ is the angle between the fibre axis and the direction of B₀ [5,6]. Since the MFC is proportional to the variance of local field perturbations, we predict that the MFC will scale with sin⁴(θ). Demonstrating this orientation dependence would provide strong first evidence that the MFC in WM is driven by the myelin-water microenvironment rather than other sources, such as iron, and promote MFC as a new imaging marker of myelin status. The aim of this study is to use ultra-high field (UHF) (≥7 T) to test this prediction in-vivo in humans across 20 canonical WM tracts.

Ten healthy controls were scanned on a Siemens Magnetom 7 T+ with a 32-channel headcoil using an EPI asymmetric spin-echo sequence (TE = 46 ms; refocusing pulse offsets tₛ = [0, 3, 6, 9, 12] ms; TR = 3000 ms). MFC maps were derived by fitting the noise-aware nonlinear signal model (eq. 2), where σ is the standard deviation of residual noise following preprocessing. Individual MFC maps were nonlinearly registered to MNI152 space and averaged into a group mean volume to maximize signal-to-noise ratio (SNR). WM fibre orientation was characterized using the FSL HCP1065 population-averaged principal eigenvector (V₁) atlas [7], from which θ was derived voxelwise through arccos(|V₁ ⋅ B₀|). Twenty WM tracts were defined using the JHU ICBM tract atlas (25% probability threshold) [8]. Within each tract, sin⁴(θ) values were binned (N = 100) and Spearman rank correlations were computed between the binned mean sin⁴(θ) and binned mean MFC (Figure 1).

Of the 20 WM tracts investigated, 14 (70%) showed a statistically significant positive Spearman correlation between the binned mean MFC and binned mean sin⁴(θ) (Figure 2). The median ρ across all tracts was +0.672, and the voxel-weighted mean ρ was +0.574. A sign test confirmed a significant directional bias toward positive trends (p = 0.041). The strongest effects were observed in the right superior longitudinal fasciculus (ρ = +0.915) and forceps minor (ρ= +0.906), inferior fronto-occipital fasciculus (ρ= +0.909). Three tracts showed significant negative correlations, and three other tracts showed no significant trends. Examples of tract orientation and corresponding MFC intensity can be seen in Figure 3. A significant positive relationship across all WM was also observed (Figure 4).

A positive relationship between mean MFC and mean sin⁴(θ) was found for the majority of WM tracts, and for whole-brain WM, consistent with the theoretical prediction that anisotropic field perturbation driven by myelinated axons is the primary source of field inhomogeneity contributing to the MFC in WM. Tracts with a broad angular range relative to B0, such as the forceps minor, SLF, and IFO, produced the strongest correlations (ρ > 0.9), reflecting the large sin⁴(θ) range (Figure 1). Negative correlations in the CST are interpretable as a geometric consequence rather than a biological contradiction; the CST runs predominantly parallel to B₀ (θ ≈ 0°), confining sin⁴(θ) to a narrow low range where MFC variance is likely dominated by orientation-independent sources such as macroscopic field inhomogeneities from air–tissue interfaces; visible in cortical and sulcal regions. The left cingulum (hippocampal) negative result warrants further investigation; its tortuous trajectory and partial overlap with CSF-adjacent regions may introduce partial-volume contamination into both the MFC and V₁ estimates. Several limitations should be acknowledged; the use of a population-averaged V₁ rather than subject-specific DTI means that individual variability in fibre orientation is not captured, potentially underpowering the observed correlations. Similarly, the group-mean MFC volume, while SNR-efficient, obscures inter-subject MFC variance that could itself be informative. Future work will examine these effects at an individual level. These results motivate correcting for fibre–B₀ orientation in future MFCi work and support exploration of MFC as a biomarker of myelin status in demyelinating pathologies, such as multiple sclerosis.

MFC in WM is significantly modulated by fibre–B₀ orientation in a pattern consistent with myelin-driven dipolar field anisotropy, implicating myelin's anisotropic diamagnetic susceptibility as the dominant source. These results suggest that MFCi at ultra-high field is a myelin-sensitive technique, supporting its potential utility in assessing demyelinating pathology.
Lewis KITCHINGMAN (Cardiff, United Kingdom) , Svetla MANOLOVA , James GHOLAM , Phillip SCHMID , Emma TALLANTYRE , Emre KOPANOGLU , Matteo MANCINI , Robert TURNER , Fabrizio FASANO , Marco PALOMBO , Mara CERCIGNANI
15:54 - 16:06 #54659 - PG009 Towards unbiased T2’ mapping and χ-separation from a single multi-echo gradient-echo 3D-EPI series with varied RF spoiling and pTX at 7 Tesla.
PG009 Towards unbiased T2’ mapping and χ-separation from a single multi-echo gradient-echo 3D-EPI series with varied RF spoiling and pTX at 7 Tesla.

Quantitative methods to map of the reversible, inhomogeneous field contribution T2’ to the effective transverse relaxation time T2* have gained particular interest over the recent years. Especially so-called χ-separation methods are promising to distinguish tissues with para- and diamagnetic susceptibility and may be helpful to better characterize brain tissue [1]. While χ-separation using only T2* is possible, accurate knowledge of T2’ is preferable. To this end, T2 and T2* need to be fitted first. Most often, this is done based on separately obtained and qualitatively very different MRI data, like multi-echo spin echo data (ME-SE for T2 fit) and multi-echo gradient echo data (ME-GRE for T2* fit). However, such vastly different pulse sequences inherently saturate tissue compartments in different ways due to altered RF patterns (e.g. 1 excitation vs. 1 excitation + several repeated refocusing pulses), slice-selective 2D ME-SE vs. volumetric 3D ME-GRE sequences, or even just different repetition times and flip angles. This may result in varied “visibility” of tissue compartments in a voxel’s signal and can ultimately introduce potential sequence/tissue-bias in the resulting T2, T2* and T2' map. In this work, we propose to fit T2 and T2* from a single ME-GRE scan including several volume measurements rapidly acquired using a segmented 3D-EPI approach with identical RF pulses (flip angle) but varied RF spoil increments Δφ to make the signal amplitude and phase sensitive to T2. This allows to fit T2 to the complex GRE data. Previously, such T2-mapping methods [2,3] have – to the best of our knowledge – only been applied to single-echo data. We demonstrate that multi-dimensional data helps to fit several parameters of interest simultaneously. Furthermore, T2* bias is avoided in the subsequent T2 estimation, if the mono-exponentially fitted TE=0 magnitudes are used. Because of the prolonged TR, this work also proposes adapted sequence parameters. The approach, which has reduced SAR and B1-inhomogenity constraints compared to ME-SE, is combined here with pTX excitation at 7 Tesla.

The ME-GRE signal with RF spoil increment Δφ depends on various MR tissue and sequence parameters (see signal equation of Fig. 1). Since both the T2-specific phase, Θ(|Δφ|, T1, T2) and the magnitude depends on T2 (and T1), we follow a previous magnitude- and phase-based T2 fitting approach [3] using 3 RF spoil increments with both signs. In total we acquire 24 = 6 (RF increments) x 4 (TE) magnitude and phase images. Acquisition: All scans were performed on a Siemens 7T Plus system (Siemens, Erlangen, Germany) using universal non-selective water-selective pTX excitation pulses [4] with a 32Rx/8Tx head coil (Nova Medical, Wilmington, MA). A B1 map for this pulse was acquired using the actual flip angle imaging method [5]. A multi-echo skipped-CAIPI sequence [6] was adapted to acquire an image series with varied RF spoil increments, incl. 5 seconds of initial dummy TRs to converge to each new steady-state (0.7mm iso, whole-head, CAIPI 2x2z1, EPI factor 4, TR=26ms, TA=7 min). 4 TEs = [3.4, 9.9, 14.6, 20.2]ms were chosen for a reasonable TE range within shortest possible TR. Compared to previous works [2,3], the increased TR required parameter adjustments to maintain reasonable T2-sensitization of the phase: specifically, an increased flip angle (40deg nominal) to keep the dynamic signal range high, and a 3-times wider Δφ range (-15°…15°) to account for stretched magnitude and phase curves as a function of RF spoil increment (see Fig. 2). Analysis: (1). As outlined in Fig. 1, from the 6 ME-GRE signal magnitudes per voxel, T2* and S0(|Δφ|=4.5°), S0(|Δφ|=9°), S0(|Δφ|=15°) were fit simultaneously (TE as independent variable). The extrapolated amplitudes S0 at TE=0 are free of T2* bias. (2). The background phase was eliminated pair-wise by computing the Hermitian inner product of the complex TE1=3.4ms signals at +|Δφ| and -|Δφ| RF spoil increments [3]. Note that the remaining T2-specific phase Θ(|Δφ|, T1, T2) is not dependent on T2*. (3). T2 was fit (together with amplitude and T1 estimates) based on the 3 |Δφ| using S0 (of step 1) and the background-corrected phase Θ (of step 2) using an extended-phase-graph (EPG) fitting routine (see [3]). (4). T2’ was finally obtained from 1/T2’ = 1/T2* -1/T2 using the relaxation times of step 1 and 3.

Fig. 3 shows an example slice of T2 (of step 3), of T2* (of step 1) and of T2’ (of step 4).

Obtained relaxation time maps show plausible and homogeneous values in CSF, WM, GM and deep GM across the brain. As indicated by Fig. 1, the potential of the data is not yet fully exploited: the multi-echo data also contain frequency information (ω) that is going to be used in the future for QSM and/or χ-separation.

As a proof-of-concept, this work has shown that high-resolution whole-brain T2’ (T2 and T2*) maps can be obtained from a single ME-GRE 3D-EPI image series with varied RF spoil increments at 7 Tesla.
Rüdiger STIRNBERG , Tony STÖCKER (, Germany)
16:06 - 16:18 #53651 - PG010 R2* and Quantitative Susceptibility Mapping reproducibility at 3, 7 and 11.7T in healthy subjects.
PG010 R2* and Quantitative Susceptibility Mapping reproducibility at 3, 7 and 11.7T in healthy subjects.

Quantitative Susceptibility Mapping (QSM) at high and ultra-high field presents strong benefits due to an enhancement of the susceptibility effect[1]. While R2* is expected to increase linearly with field strength[2], susceptibility values are theoretically field-independent. However, slightly lower susceptibility values at 7T compared to 3T have been reported, potentially reflecting acquisition-related biases[3]. Furthermore, QSM strongly depends on echo time, limiting inter-field reproducibility when identical parameters are used[4]. Stronger B0 inhomogeneities at 7 and 11.7T further complicate cross-field comparison. Here, we independently optimized acquisition protocols at each field strength and compared R2* and QSM at 3T and 7T in 10 healthy subjects using multiple sequences and resolutions with identical reconstruction pipelines. In addition, preliminary data from one subject acquired at 11.7T on the Magnetom Iseult are also presented. Normative values were derived in the basal ganglia using a combined deep learning segmentation approach.

Ten healthy volunteers (mean age 30±5 years, 5 women/5 men) were scanned on Siemens Healthineers 3T Magnetom Cima.X, 7T Magnetom Terra.X and 11.7T Magnetom Iseult[5] systems (software: XA61, XA60, VE12U respectively). At 7 and 11.7T, pTx mode with non-selective Universal Pulses (UP)[6] was used to ensure homogeneous flip angle distribution, maximizing SNR uniformity across the brain. A 64-channel receive-only head coil (Siemens Healthineers) was used at 3T, an 8/32-channel pTx coil (NovaMedical) at 7T and a custom 8/32-channel pTx head coil at 11.7T[7]. Whole-brain 3D Multi-Echo GRE, VIBE and segmented EPI[8] sequences were acquired at 1.0 and 0.6 mm isotropic resolutions (Table 1). All subjects underwent two MRI sessions (V1 and V2, 7-day interval) for scan-rescan reproducibility assessment at 3 and 7T but only one session at 11.7T. Echo images were combined using root mean square (RMS). Brain masks from BET (FSL) on 3D GRE V1 were registered to all sequences and sessions using ANTs[9]. R2* was fitted using nonlinear regression. For QSM, phase evolution across successive TEs was first fitted to estimate the local frequency shift map, providing TE-robust field estimation, followed by background field removal and dipole inversion using MEDI-Toolbox [10-11]. ROIs were defined using a deep learning model[12] and back-projected to subject space.

Representative maps and normative values of both R2* and QSM are shown in Figure 1. Scan-rescan reproducibility of QSM and R2* is summarized in Table 2. QSM reproducibility was excellent across all sequences and ROIs (globus pallidus (GP), putamen (Put) and caudate (Cau) nucleus) at 1mm isotropic resolution (ICC: 0.935-0.997, CoV<10%), with no significant systematic bias between sessions (Bland-Altman, all p>0.05). At 0.6mm, QSM reproducibility was reduced for the GRE sequence at 3T, consistent with insufficient SNR at lower field strength and higher spatial resolution. R2* reproducibility was excellent across sequences and ROIs (ICC: 0.785-0.976 at 3T, 0.660-0.974 at 7T), apart from a significant systematic bias detected for the Cau nucleus using the GRE 0.6mm sequence at 3T (bias: -0.755 Hz, p=0.010). R2* values increased progressively with field strength (GRE, 0.6mm iso). The 7T/3T ratios (2.28, 2.04 and 1.89 for GP, Put and Cau) were below the theoretical value of 7/3≈2.33, as were 11.7T/3T ratios (3.70, 3.42 and 2.97) vs 11.7/3≈3.90. At 1mm, QSM values were significantly lower at 7T for GRE (except Put), VIBE and EPI#1 (all p<0.05), while EPI#2 showed no significant difference in GP and Put. At 0.6mm, significant reductions were observed for GRE across all ROIs but not for EPI. Preliminary QSM values at 11.7T (GRE, 0.6mm iso) were 0.135, 0.055 and 0.056 ppm for the GP, Put and Cau, comparable to or slightly above 3T values.

Acquisition protocols were pushed just below PNS and SAR limits at each field strength to maximize data quality, with all sequences kept under 10 minutes for clinical translatability. R2* values showed linear evolution with field strength, confirming the expected linear relationship[2]. QSM values were slightly but significantly lower at 7T compared to 3T, suggesting either residual acquisition-related biases or a genuine field-dependence of susceptibility measurements. The 11.7T dataset will provide further insight into this question. The TE-dependency of QSM[4] was addressed by fitting phase evolution across successive TEs, reducing sensitivity to TE-dependent nonlinearities and providing more robust cross-field comparison.

This study provides normative R2* and QSM values in deep brain structures at 3T and 7T using field-optimized protocols and identical reconstruction pipelines, ensuring unbiased comparison across field strengths, sequences and resolutions. Acquisitions at 11.7T will be completed with the same cohort, paving the way for future patient studies.
Mélanie DIDIER , Elena GROSSO , François-Xavier LEJEUNE , Benoit BÉRANGER , Marc LAPERT , Romain VALABREGUE , Eric BARDINET , Vincent GRAS , Franck MAUCONDUIT , Nicolas BOULANT , Alexandre VIGNAUD , Stéphane LEHÉRICY , Mathieu SANTIN (Paris)
16:18 - 16:30 #54697 - PG011 Impact of the Echo Time Sampling on QSM Measurements: Application to Multiple Sclerosis.
PG011 Impact of the Echo Time Sampling on QSM Measurements: Application to Multiple Sclerosis.

Quantitative Susceptibility Imaging (QSM) is a valuable method to assess iron accumulation and ongoing inflammation. These susceptibility-based features are increasingly recognized for their diagnostic and prognostic value for multiple sclerosis (MS)[1]. To allow its application in clinical practice, it is crucial to obtain reliable maps[2], and to fully understand how the imaging parameters can affect them[3]. Previous studies have reported an echo-time dependency of QSM measurement[4–6]. However, the potential impact of the echo sampling strategy remain unclear. The goal of this study is to explore the impact of multiple strategies of echo down-sampling on QSM measurement.

This ancillary study combined datasets from two prospective studies (ClinicalTrial.gov: NCT04906941 and NCT04907487). All participants underwent scanning sessions on a 3T MRI scanner (Elition, Philips Healthcare, Netherlands), with a 32-channel head coil. We selected participants (controls and MS patients) who had an MRI with the following sequence: (i) 3D T1-weigthed magnetization-prepared rapid gradient-echo), (ii) 3D Fluid attenuated inversion recovery (FLAIR), and (iii) 3D gradient-echo (GRE) susceptibility-weighted images (SWI) using 12 monopolar echoes. Details of imaging parameters are presented Fig. 1. Three strategies of echo downsampling were evaluated by keeping specific set of 6 echoes: (i) firsts, removing last 6 echoes; (ii) odd, keeping an echo out of two starting at the first one; and (iii) even, keeping an echo out of two starting at the second one. SWI sequence acquired using 12 echoes was considered as the reference. QSM maps were reconstructed using the SEPIA software[7]. Brain were extracted using FSL-Bet[8]. Phase unwrapping was done with Laplacian-based method[9], and echo combination with optimum weights[10]. The background field removal was performed using a PDF method[11]. The dipole inversion was solved by the MEDI method[12][13] with the regularisation parameter lambda set to 1000. Image analysis was performed in the T1-weighted native space by registering QSM maps with ANTS. Region-of-interest were extracted using FIRST (FMRIB Software Library), Freesurfer, and DeepLesionBrain (VolBrain). For each ROI, the mean and the standard deviation (SD) of QSM signal were extracted. We compared the mean value of each down-sampling strategies with the reference map using paired t-tests with Bonferroni correction. Error map, bias, normalised absolute error (NMAE), structural similarity index optimized for QSM (XSIM)[14] and intra-class correlation coefficient (ICC) were also computed.

89 participants were included (Female=60) with a mean age of 41±13 years old, including 81 patients with MS. Fig. 2 shows an example of QSM maps generated with the three echo down-sampling strategies, and the corresponding error and XSIM maps. Fig. 3 presents the mean and standard deviation of regional QSM values. Down-sampled reconstructions have significantly different mean value over most of the ROI in comparison with the reference map. Fig. 4 shows four comparison metrics (Bias, NMAE, XSIM and ICC) computed for each ROI and downsampled QSM maps. Caudate nuclei exhibit the highest bias (Firsts: -4.2±4.1ppb, Odd: -4.4±2.9ppb, Even: 5.8±3.5ppb). Thalami present the highest NMAE (Firsts: 0.72±0.17, Odd: 0.49±0.11, Even: 0.67±0.13) and increase of intra-ROI variability, associated with the lowest XSIM (First: 0.54±0.07, Odd: 0.76±0.05, Even: 0.57±0.06). The reproducibility between the reference and the down-sampled maps is good to excellent except for normal-appearing white-matter (ICC NAWM Even=0.68). Lesion and putamen are regions the most robust in term of reproducibility among subjects and structural similarity (ICC>0.94, XSIM>0.68).

By down-sampling multi-echo SWI data, we evaluated how the number and distribution of echoes influence QSM signal reliability, reproducibility, and structural fidelity across different brain regions. Reduced or non-optimally sampled echo sets introduce measurable bias and structural deviations. Using only six echoes with an interval of one echo resulted in greater errors than using an interval of two, suggesting that the first six echoes do not provide sufficient temporal coverage. The results also highlight the importance of the first echo on the QSM measurements. Despite this, overall reproducibility remained good to excellent (ICC>0.75) except in NAWM. These results confirm the echo-time dependency of QSM reported in previous studies and emphasize that balanced inclusion of both early and late echoes is crucial to minimize bias and preserve image fidelity.

These findings demonstrate that the echo sampling strategy chosen impacts brain regions differently. Our results, obtained on a large cohort of patients, highlight that limited echo coverage leads to regional bias and reduced accuracy. Optimizing echo sampling is essential for reliable QSM measurements in research and clinical applications.
Anne-Lise LE BARS (PARIS) , Julien SAVATOVSKY , Aurélien HERVOUIN , Fanny NOURY , Emilie POIRION
16:30 - 16:42 #54639 - PG012 Post-Contrast Quantitative Susceptibility Mapping Is Significantly Biased by Gadolinium -Based Contrast Agents Administration in Multiple Sclerosis.
PG012 Post-Contrast Quantitative Susceptibility Mapping Is Significantly Biased by Gadolinium -Based Contrast Agents Administration in Multiple Sclerosis.

Quantitative Susceptibility Mapping (QSM) is increasingly used in multiple sclerosis (MS) to assess iron-related pathology and susceptibility-based biomarkers such as paramagnetic rim lesions [1]. However, the influence of gadolinium-based contrast agents (GBCAs) on QSM measurements remains insufficiently characterized, despite frequent post-contrast acquisition of susceptibility sequences in clinical workflows. This study investigates how gadolinium affects QSM measurements in MS patients undergoing contrast-enhanced MRIs, analyzing QSM values before and after GBCAs injection while considering timing and previous injections. As susceptibility-based imaging gains diagnostic and prognostic importance in MS, understanding potential GBCA-related bias is essential for reliable interpretation.

In this prospective single-center study (ClinicalTrial.gov: NCT04906941), patients with MS underwent brain magnetic resonance imaging including identical QSM acquisitions before and after GBCA administration (Figure 1). QSM raw data were acquired using a 3D-FFE sequence with the following parameters: FOV: 240*240*176 mm3, Voxel size = 1.0*1.2*1.0 mm3 reconstructed to 1.0*1.0*1.0 mm3. Elliptical scan, TR = 41 ms, TEs = 3.1 ms to 36.1 ms with a ΔTE of 3 ms, Bandwidth per pixel = 913.7 Hz. For susceptibility maps reconstruction, the local field map was calculated by non-linear fitting the complex gradient echo signal over echo times, then background field removal was performed using the pre-conditioned Laplacian boundary value method (LBV) and the inversion was solved using the L1-MEDI method [2]. Automated anatomical segmentation was performed using FreeSurfer and FSL-FIRST to extract regional QSM values in white matter, cortex, deep gray matter, and fluid-attenuated inversion recovery lesions. Pre- and post-contrast QSM values were compared using paired statistical testing with Bonferroni correction, intra-class correlation coefficient (ICC), and Bland-Altman plots. Linear mixed-effects modeling assessed the influence of GBCA administration while adjusting for age and sex. Associations with GBCA dose, injection timing, and prior GBCA exposure were also explored.

Fifty-five participants (38 women, mean age ± standard deviation = 39.8±12.8 years old) were included after excluding scans with incomplete data or significant motion artifacts. GBCA administration resulted in significant reductions in QSM values across all examined brain regions (all p<0.01, Figure 2, Table 1). In global white matter, mean QSM values decreased from −4.87±0.35 ppb pre-contrast to −7.92±0.36 ppb post-contrast (p<0.001). Similar reductions were observed in cortical and deep gray matter regions, with the largest susceptibility decrease detected in deep gray matter structures. White matter lesions showed smaller average changes (5.63±0.91 vs 4.36±1.01 ppb, p=0.003) but greater inter-subject variability. ICC indicated poor-to-moderate agreement in white matter (ICC=0.41; 95% confidence interval [CI]: 0.17, 0.61) and cortex (ICC=0.71; 95% CI: 0.55, 0.82), while excellent agreement was observed in lesions (ICC=0.92; 95% CI: 0.87, 0.96). Bland–Altman analysis further demonstrated that the observed post-contrast differences exceeded expected scan–rescan variability in several key regions, particularly white matter and deep gray matter. The magnitude of QSM reduction correlated with administered GBCA dose (Figure 3), indicating a dose-dependent effect. In contrast, no significant association was found between QSM change and body weight or prior GBCA exposure. In the linear mixed-effects modeling, pre-contrast scans showed significantly higher QSM values than post-contrast scans (β=3.71±0.26, p<0.0001), independent of age and sex.

These findings demonstrate that GBCAs induce a systematic susceptibility bias affecting QSM measurements in MS. The regional heterogeneity observed may reflect differences in vascularization, baseline susceptibility, and lesion composition. Because QSM is increasingly used to characterize iron accumulation and chronic active lesions, post-contrast acquisitions may confound interpretation in both clinical and research settings. Although susceptibility-weighted imaging was not directly assessed, the shared dependence on phase information suggests that similar effects may occur in susceptibility-weighted imaging–based biomarkers.

GBCA administration significantly alters QSM measurements in patients with MS, introducing a systematic susceptibility bias that may confound susceptibility-based biomarkers. These findings support standardizing magnetic resonance imaging protocols to acquire QSM before contrast administration, particularly in studies evaluating iron deposition or paramagnetic rim lesions.
Emilie POIRION (Paris) , Khadra AGGABI FLEURY , Mathieu SANTIN , Chloé LE COSSEC , Julien SAVATOVSKY
16:42 - 16:54 #54690 - PG013 Echo-Planar Susceptibility-Weighted Imaging Improves Central Vein Sign Detection in Multiple Sclerosis.
PG013 Echo-Planar Susceptibility-Weighted Imaging Improves Central Vein Sign Detection in Multiple Sclerosis.

The 2024 revision of the McDonald criteria highlights the central vein sign (CVS) and paramagnetic rim lesion (PRL) as key imaging features for multiple sclerosis (MS) diagnosis [1]. Reliable detection of these imaging features depends on susceptibility-weighted imaging (SWI) enhancing intraparenchymal veins visibility on magnitude images and iron deposition on phase images [2]. However, the optimal susceptibility-weighted imaging (SWI) acquisition (parameters and sequences) for reliable detection remains uncertain. In this study, we compared four SWI sequences to identify the most sensitive and clinically feasible approach for reliable CVS and PRL detection, supporting their integration into routine MS diagnostic workflows.

In this prospective cross-sectional study (ClinicalTrials.gov: NCT04705870), participants with MS diagnosed according to the 2017 McDonald criteria underwent a standardized protocol on a 3 Tesla MRI scanner (Elition, Philips Healthcare, Netherlands). Four SWI sequences were acquired: optimized EPI-based SWI (SWI-EPIisovoxel), gradient-echo SWI (SWI-GRE), resolution-matched EPI-SWI (SWI-EPIanisovoxe), and repetition-time–matched EPI-SWI (SWI-EPIshortTR). Phase images were reconstructed from the complex signal and processed using vendor-provided high-pass filtering to generate susceptibility-weighted phase images. For each participant, FLAIR images were reviewed to identify up to five lesions per anatomical region meeting predefined criteria (Figure 1)[3] , with an overall cap of 20 lesions per subject. A standardized report form recorded the number of selected lesions, CVS-positive lesions, PRL, and lesions with multiple veins. Subjective ratings included image quality, artefact severity, and diagnostic confidence for CVS and PRL (Table 1). Paired comparisons and linear mixed-effects models were performed. Subjective ratings were analysed using the Friedman test, followed by pairwise Wilcoxon signed-rank tests with Bonferroni correction for multiple comparisons.

Fifty-six participants (mean age 38.2±11.3 years; 29 men) with 453 lesions were analyzed (180 periventricular, 50 juxta-cortical, 185 deep white matter and 38 posterior fossa). SWI-EPIisovoxel detected a higher proportion of CVS-positive lesions compared with SWI-GRE (68.6% vs 41.3%, p<0.001, Figure 2). SWI-EPIanisovoxel and SWI-EPIshortTR also outperformed SWI-GRE (67.4%, p<0.001; 65.5%, p<0.001; respectively). No differences were observed between EPI-based sequences (p=1.0). PRL detection was comparable across sequences (12.9%–17.3%, Figure 3). Subjective evaluation showed significantly higher diagnostic confidence for CVS with EPI-based sequences compared with SWI-GRE (χ² = 64.28, p<0.001). Pairwise analyses confirmed improvements for SWI-EPIisovoxel (p = 1.2 × 10⁻⁷), SWI-EPIanisovoxel (p = 4.1 × 10⁻⁶), and SWI-EPIshortTR (p = 1.2 × 10⁻⁴). Diagnostic confidence for PRL also differed across sequences (χ² = 21.34, p < 0.0001), with higher confidence for SWI-EPIanisovoxel and SWI-EPIshortTR compared with SWI-GRE (p = 0.001 and p = 0.003, respectively). No differences were observed between EPI-based sequencesfor CVS and PRL detection. Overall image quality was rated high across all sequences, with median scores of 5 for each. Pairwise comparisons revealed that only SWI-EPIanisovoxel and SWI-EPIshortTR achieved better scores than SWI-GRE (p=0.007 and p=0.003, respectively). Artifact ratings were low and comparable across all acquisitions (median = 4, range 2–5, p=0.25).

Our study demonstrated an improved visualization of the CVS using SWI-EPI sequences compared to a gradient-echo SWI images in participants with MS. Furthermore, sequences specifically optimized for CVS detection also provided superior visualization. Following the last revision of the McDonald criteria, reliable CVS assessment is particularly relevant, as it may refine risk stratification in patients with incidentally discovered white matter lesions by helping to distinguish demyelinating pathology from alternative causes. CVS assessment is also highly relevant in the differentiation of MS from vascular-related white matter hyperintensities. Regarding PRLs, our results indicate that sequence optimization had limited impact on their detection. This finding suggests that PRL visibility may be less dependent on acquisition strategy than CVS detection, and more strongly influenced by lesion biology and disease stage.

Our study demonstrates the superiority of EPI-based SWI over SWI-GRE for CVS visualization and reader confidence compared, supporting their use for MRI-based MS diagnosis. Given the increasing weight of CVS in the revised 2024 McDonald criteria, the routine implementation of SWI-EPI sequences should be strongly considered for MS diagnosis and monitoring in clinical practice.
Paul PATURAL , Julien SAVATOVSKY , Marine BOUDOT DE LA MOTTE , Emilie POIRION (Paris)
Sala de Cambra

"Thursday 01 October"

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C14
15:30 - 17:00

FT3-4 - MRI Hardware in 2050

FT Machines
15:30 - 16:00 Next-Generation MRI Coils: Wireless, Flexible, and Adaptive Designs. Özlem  IPEK (PhD) (Keynote Speaker, London, United Kingdom)
16:00 - 16:30 High-Performance and Specialized Gradients: Where Are We Heading? Edwin VERSTEEG (Assistant Professor) (Keynote Speaker, Utrecht, The Netherlands)
16:30 - 17:00 Beyond Conventional Gradients: Gradient-Free and Low-Field MRI. Gordon SARTY (Professor) (Keynote Speaker, Saskatoon, Canada)
Sala Petita

"Thursday 01 October"

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D14
15:30 - 17:00

LTD1-3 Scientific session
Diffusion and Microstructure

15:30 - 15:33 #54248 - PG138 Differential vulnerability of ODF- and streamline-based tractography metrics to noise levels in diffusion MRI.
PG138 Differential vulnerability of ODF- and streamline-based tractography metrics to noise levels in diffusion MRI.

Diffusion-weighted imaging (DWI)-based tractography enables noninvasive evaluation of white matter connectivity by reconstructing fiber pathways from diffusion orientation information [1,2]. Because multiple fiber orientations may exist within a voxel, orientation distribution function (ODF) reconstruction methods such as constrained spherical deconvolution are used to estimate complex diffusion directions [3,4]. However, DWI is highly sensitive to signal-to-noise ratio (SNR), and Rician noise can distort diffusion signals, alter ODF estimation, and increase false-positive streamlines [5-7]. Although previous studies have investigated the effects of noise on scalar diffusion metrics, few have systematically evaluated how noise propagates from ODF instability to tractography-derived features [8,9]. In addition, tract-specific differences in noise vulnerability according to anatomical complexity remain poorly understood. Therefore, this study aimed to quantitatively evaluate the effects of Rician noise on ODF- and streamline-based tractography metrics across multiple SNR levels and to investigate tract-specific differences in noise vulnerability.

DWI data from 423 cognitively normal participants were obtained from the Alzheimer’s Disease Neuroimaging Initiative database. Images were preprocessed using the FMRIB Software Library and MRtrix3, including denoising, Gibbs ringing, eddy current, and bias field correction, followed by nonlinear registration to the FMRIB58_FA standard space using Advanced Normalization Tools. Rician noise was synthetically added to the preprocessed DWI datasets at SNR levels of 10–50. Fiber orientation distributions were reconstructed using constrained spherical deconvolution with response functions estimated by the Tournier algorithm, and whole-brain probabilistic tractography was performed using the iFOD2 algorithm. ODF similarity, streamline count, streamline density, and mean streamline length were extracted, and region-wise analyses were conducted in 50 white matter regions defined using the Johns Hopkins University atlas. Statistical analyses were performed using linear mixed-effects models with false discovery rate correction.

All diffusion-derived features, including ODF similarity, streamline count, streamline density, and mean streamline length, showed significant differences across SNR conditions (all P < 0.001) (Figure 1). ODF similarity continuously increased with increasing SNR and demonstrated the greatest sensitivity to noise across white matter regions. ROI-level analyses further showed that ODF vulnerability exhibited substantially greater variability across tracts than streamline-based metrics (Figure 2). Streamline count was consistently overestimated under noisy conditions, whereas streamline density and mean streamline length showed marked reductions in low-SNR conditions and gradually recovered as SNR increased. Region-wise analyses revealed that vulnerability was greatest in anatomically complex tracts, particularly the uncinate fasciculus, fornix, and cingulum. ODF-based vulnerability was most strongly associated with changes in mean streamline length (Figure 3), and fiber-class analysis demonstrated greater vulnerability in limbic and association fibers than in projection and commissural fibers (Figure 4).

The present study demonstrated that diffusion MRI tractography metrics exhibit differential vulnerability to Rician noise depending on both feature type and anatomical tract characteristics. Among the evaluated features, ODF similarity showed the greatest sensitivity to noise, indicating that local orientation information is highly susceptible to signal degradation. In addition, anatomically complex tracts with high curvature and crossing fiber configurations, particularly limbic and association fibers, were more vulnerable to noise-induced distortion than projection or commissural fibers. These findings suggest that noise effects propagate hierarchically from voxel-level orientation instability to tract-level geometric alterations, ultimately influencing streamline-based measurements. The strong association between ODF vulnerability and mean streamline length further supports the close relationship between local orientation distortion and tractography instability. Collectively, these results highlight the importance of considering both feature-specific and tract-specific noise sensitivity when interpreting diffusion MRI tractography findings.

This study demonstrated that Rician noise significantly affects both ODF- and streamline-based tractography metrics in diffusion MRI, with vulnerability varying according to feature type and anatomical tract characteristics. In particular, limbic and association fibers showed the greatest sensitivity to noise-induced distortion.
Sewon LIM (Incheon, Republic of Korea) , Hajin KIM , Youngjin LEE
15:33 - 15:36 #54534 - PG139 Co-MEDS: Convex Maximum Entropy Deconvolution on a Sphere for Fiber Orientation Estimation in Diffusion MRI.
PG139 Co-MEDS: Convex Maximum Entropy Deconvolution on a Sphere for Fiber Orientation Estimation in Diffusion MRI.

Reconstructing fiber geometry in diffusion MRI requires solving an ill-posed inverse problem under strong regularization constraints. Current continuous reconstruction methods such as Constrained Spherical Deconvolution (CSD) [4] rely on soft non-negativity constraints and struggle to separate crossing fibers below 40–45 degrees. Maximum Entropy Spherical Deconvolution (MESD) [1], originally proposed in 2005, offered a theoretically appealing alternative grounded in information theory and guaranteed non-negativity by construction but was limited by both a non-convex optimization problem and costly numerical integration, preventing its practical adoption. A practical convex formulation of maximum-entropy spherical deconvolution has remained absent.

Here, we present Co-MEDS (Convex Maximum Entropy Deconvolution on a Sphere), a framework that models the fiber distribution as a continuous unnormalized density directly on the unit sphere. Reconstruction is formulated as a relaxed entropy maximization problem and transformed through Fenchel–Rockafellar duality into a smooth finite-dimensional concave objective over Lagrange multipliers, solved efficiently with quasi-Newton BFGS. The convex reformulation guarantees convergence to a global optimum. The fiber density is recovered analytically through an exponential-family representation, guaranteeing strict non-negativity without any explicit constraint enforcement. The trade-off between noise suppression and angular resolution is controlled through a single regularization parameter α.

As a proof of concept, we compared Co-MEDS with CSD (l_max = 8) implemented in DIPY [3] on synthetic two-fiber crossing phantoms with different volume fractions and diffusivities, spanning crossing angles from 20° to 90° at SNR = 20, with Rician noise, with b = 1000 and 3000 s/mm². For each crossing angle, 512 simulations were run to compute success rates and false positive rates. Co-MEDS was evaluated using two regularization parameters, α = 3x10⁻³ and α = 6x10⁻³, to assess robustness across regularization choices. Co-MEDS (α = 3x10⁻³) outperformed CSD at lower crossing angles for both b = 1000 and 3000 s/mm², see Fig. 1. At b = 3000 s/mm² and SNR = 20, it recovered 73% of crossing configurations at a 40° crossing angle, compared to 26% for CSD, while also achieving a lower false positive rate, see Fig. 2. Reconstruction of 95,647 white-matter voxels (FA >= 0.15) on the Sherbrooke dataset [2] (b = 2000 s/mm², 64 directions) was completed in about 1 minute on an Apple M4 Pro (48 GB) system.

Co-MEDS resolves both limitations of MESD [1], namely non-convex optimization and computational cost, while retaining its theoretical appeal. Unlike harmonic-based methods such as CSD [4], the continuous spherical representation avoids both soft non-negativity enforcement and Gibbs ringing artifacts. Reduced false positives are particularly important for downstream tractography, where spurious peaks propagate errors into reconstructed pathways [5]. Extensions to multi-shell multi-tissue and spatially regularized formulations are natural next steps.

Co-MEDS establishes the first practical convex maximum-entropy framework for spherical deconvolution in diffusion MRI, resolving a gap that has persisted since MESD was proposed in 2005. These results suggest convex entropy-based reconstruction as a promising direction for future diffusion MRI methods.
Harshit HARSHIT (Toulouse) , Florence RÉMY , Pierre MARÉCHAL
15:36 - 15:39 #54452 - PG140 Parameter-Estimation-Driven Optimization of Diffusion MRI Protocols for Microstructure Imaging.
PG140 Parameter-Estimation-Driven Optimization of Diffusion MRI Protocols for Microstructure Imaging.

Diffusion MRI (dMRI) enables non-invasive estimation of tissue microstructural parameters, but the accuracy and stability of these estimates depend critically on the acquisition protocol. In complex biophysical models, different parameter combinations can produce similar dMRI signals, a phenomenon known as parameter degeneracy[1], which hinders the reliable interpretation and quantification of model parameters. This issue can be mitigated by designing acquisition protocols that enhance the distinguishability of signals arising from different parameter combinations. Here, we propose a general parameter-estimation-driven framework for dMRI protocol optimization under a chosen forward signal model. As a proof-of-concept, we apply the framework to Cellular Exchange Imaging (CEXI), which models diffusion in permeable spherical cells mimicking lymph node cancer cells[2].

We optimized an 8-shell PGSE protocol by varying the gradient duration δ, diffusion time Δ, and gradient strength G of each shell, with the echo time (TE) determined by the longest measurement. For each candidate protocol, analytical signals from the CEXI model were simulated for 75 substrates defined by cell radius R, intra- and extracellular diffusivities Di and De, volume fraction f, and permeability κ, spanning R=[2,4,6,8,10] µm, f=[0.4,0.5,0.6], κ=[0.01,10,20,30,40] µm/s, Di=10-9 m2/s, and De=2x10-9 m2/s. Signals were scaled for T2​ relaxation with T2=60 ms and corrupted with Rician noise corresponding to SNR=20 at TEref=70 ms. The CEXI parameters were then estimated from the noisy signals. The objective minimized the mean squared error between estimated and ground-truth CEXI parameters, averaged across substrate parameter sets and noise realizations. Errors were computed in bounded normalized coordinates with logarithmic scaling, so that parameters with different ranges contributed comparably. A stochastic global optimizer based on the covariance matrix adaptation evolution strategy[3] was used for both protocol optimization and CEXI model fitting. The optimized protocol was compared with two 8-shell PGSE baseline protocols. Baseline 1 used fixed timings δ=8 ms and Δ=50 ms, whereas Baseline 2 used fixed δ=8 ms and variable Δ=10-80 ms. In both baselines, G was chosen to produce b-values ranging from 500 to 6000 s/mm2. To aid interpretation of the results, we computed the Fisher information matrix for each protocol over the grid of R, f, and κ, with fixed Di and De. At each grid point, the full five-parameter Fisher matrix was evaluated from CEXI signal Jacobian, and its mean log-determinant across the grid was reported as a summary measure of joint parameter identifiability. Higher mean log-determinant values were interpreted as indicating greater overall information content and lower joint parameter uncertainty.

Figure 1 shows the evolution of the protocol parameters δ, Δ and G, together with the objective loss during optimization. Early iterations explored a broad range of acquisition parameters, whereas later iterations refined them toward the final optimized protocol. Figure 2 compares parameter estimates obtained with the baseline and optimized protocols from analytical CEXI signals corrupted with 10 independent Rician noise realizations per substrate. The optimized protocol yielded estimates closer to the ground-truth values, particularly for radius, volume fraction, and diffusivity parameters. Permeability estimates improved relative to Baseline 1, although their standard deviation remained higher than for Baseline 2. Figure 3 compares the log-determinant of the Fisher matrix across the CEXI parameter space for the baseline and optimized protocols. The optimized protocol achieved the highest mean log-determinant, followed by Baseline 2 and Baseline 1, indicating improved local joint identifiability of the model parameters.

The optimized protocol showed the greatest improvements for radius, volume fraction, and diffusivity estimation, whereas permeability remained more variable. This supports parameter-estimation error as a practical optimization objective, while highlighting the need for parameter-specific refinements when less robustly recovered parameters, such as permeability, are of primary interest. The higher Fisher determinant further suggests that the parameter-estimation-driven objective also enhanced local joint parameter identifiability, even though Fisher information was not included directly in the optimization objective.

We presented a general parameter-estimation-driven framework for dMRI protocol optimization and demonstrated its feasibility using the CEXI model. The optimized PGSE protocol improved parameter estimates compared with baseline protocols and resulted in a higher mean Fisher determinant across the CEXI parameter space. These results support the feasibility of parameter-estimation-driven optimization for designing dMRI acquisition protocols tailored to the microstructural parameters of a chosen forward signal model.
Ekin TASKIN (Lausanne, Switzerland, Switzerland) , Jonathan Rafael PATINO , Erick Jorge CANALES-RODRIGUEZ , Jean-Philippe THIRAN
15:39 - 15:42 #54646 - PG141 Reliability Framework for Simulation-Based Microstructure Estimation with Real Data.
PG141 Reliability Framework for Simulation-Based Microstructure Estimation with Real Data.

Diffusion-weighted MRI (DW-MRI) aims to map white matter microstructure non-invasively, but current estimation pipelines return parameter values without any measure of their reliability or confidence[1]. The inverse problem is ill-posed: structurally distinct tissue configurations can produce nearly identical signals[2]. Monte Carlo (MC) dictionaries on geometrically realistic substrates[3,4] can replace analytical simplifications, yet no existing approach tells the user when a given estimate can be trusted, nor why it fails. We address this with a validation framework that links three components: histological priors, an MC dictionary on CACTUS substrates[4], and in vivo DW-MRI of rat corpus callosum (CC) acquired with the NEXI protocol[5]. Alongside the dictionary, we introduce a Reliability Index composed of three scores that pinpoint the sources of unreliability and guide targeted refinement.

We built a dictionary of 1,050 synthetic voxels (175 CACTUS substrates × 6 intrinsic diffusivities) with parameter ranges grounded in histology of rat CC: mean axon radius 0.25-0.85 µm[6] (7 values), orientation dispersion 0-10°[7] (5 values), intracellular volume fraction (ICVF) 64-92%[6] (5 values), and free diffusivity 1.75-3.0 µm²/ms[8] (6 values) g-ratio fixed at mean 0.7[9]. Each substrate in a (120 µm)³ domain[3]. MC-DC simulations[3] produced PGSE signals (δ = 4.5 ms, TE = 58 ms) on a grid of 20 b-shells (500-10,000 s/mm²), 8 diffusion times (10-45 ms), and 24 directions shell, fully spanning the in vivo acquisition. We aim to estimate radius, dispersion, ICVF, and diffusivity by finding the synthetic voxel that best describes them. We used signals at different b-values and diffusion times, then we computed the log-MAE(Eq. 3) distance, to estimate parameters with exponentially weighted KNN (eq. 4-5). Three scores (Eq. 6-8) map each test voxel to[0,1]: S_out, from the Local Outlier Factor[10] of the test signal against the dictionary; S_match, the residual between target and KNN reconstruction; and S_deg, the generalised spread of the covariance. Their geometric mean (Eq. 9) defines four levels (reliable ≥0.80, moderate ≥0.60, questionable ≥0.40, unreliable). We self-validated on the dictionary using leave-one-out estimation across nine Rician SNR levels (∞ to 25; 9,450 cases) and checked the Reliability Index for 65 CC voxels from Wistar rats acquired with the NEXI protocol[5].

In the synthetic dictionary (Fig 1), the three scores degrade monotonically as SNR decreases. ICVF is the best-estimated parameter (<10% mean relative error even at SNR = 25); axon radius and diffusivity reach ~30% and ~25% at SNR = 25; orientation dispersion shows a persistent ~22% floor, a problem imposed by the orientation-invariant spherical mean. S_deg is the first score to spread (IQR 77-97% already at SNR = 100), revealing parameter degeneracy as a structural property of the representation, not a noise artifact. The Reliability Index correlates with actual estimation error (Spearman ρ = −0.742, p < 10⁻¹⁰). In vivo (Fig 2), S_out remains consistently high (median ≥ 87% across rats), confirming that the CACTUS dictionary covers the experimental signal space. S_match stays high (74-93%) while S_deg is the limiting score (14-37%), mirroring the synthetic regime. Across 65 voxels, 14% are reliable, 26% moderate, 51% questionable, and 9% unreliable, for a total of 40% moderate-to-reliable. Estimated parameters fall within histology-derived ranges: axon radius 0.33-0.63 µm (vs. ~0.35 µm[6]), ICVF 0.55-0.74 (vs. 0.5-0.7[6]), dispersion 3.3-7.0°, free diffusivity 1.91-2.48 µm²/ms (consistent with planar encoding[8]). Fig 3 shows in detail three voxel analyses. 1) a high-R case (there is a potential good estimation), 2) a low-S_out case (dictionary mismatch), and 3) a low-S_deg case (parameter degeneracy). Finally, in Fig. 4, in the outer boundary of the CC mask, S_out collapses, and parameter estimates saturate at the dictionary bounds, demonstrating that R honestly flags tissue not represented in the dictionary.

Beyond posterior-based uncertainty quantification[9], the three-score decomposition identifies why an estimate is unreliable and points to a targeted fix: low S_out calls for expanded substrate ranges, low S_match for denser sampling or a richer representation, and low S_deg for protocol contrast that breaks degeneracy and/or better modeling of the signal. In our case, S_deg is the bottleneck: the score with the lowest values across all rats (because spherical mean blurs orientation), not the dictionary or estimator. Better optimized protocols like multidimensional encodings[10] could address this.

We present a reliability framework for simulation-based DW-MRI microstructure estimation. By coupling a histology-grounded CACTUS dictionary with three reliability scores, this work paves the way for dictionary-based microstructure approaches to gain traction in the community, providing the missing per-voxel validation.
Juan Luis VILLARREAL HARO (Lausanne, Switzerland, Switzerland) , Ileana JELESCU , Jean-Philippe THIRAN , Jonathan RAFAEL-PATINO
15:42 - 15:45 #54584 - PG142 Detectability analysis of lymphocyte infiltration measurement via clinical diffusion MRI: a simulation study.
PG142 Detectability analysis of lymphocyte infiltration measurement via clinical diffusion MRI: a simulation study.

Accurately monitoring tumor-infiltrating lymphocytes (TILs) is essential for predicting immunotherapy outcomes. Currently, assessing TIL infiltration relies on tissue biopsies, which are invasive and prone to sampling errors. While diffusion MRI (dMRI) holds potential to non-invasively characterize this infiltration across the entire tumor, the influence of baseline tumor characteristics and MRI acquisition parameters on the limit of detection remains unclear. We aimed to determine the minimum detectable change in lymphocyte infiltration (defined as a change in lymphocytes per cancer cell (LpCC)) and evaluate the impact of both diffusion time (Δ) and signal-to-noise ratio (SNR) conditions on biomarker sensitivity.

Numerical simulations were employed to model the tissue apparent diffusion coefficient (ADCT) signal decay in synthetic tumor tissues. dMRI signals were generated using a two-pool hindered-restricted diffusion model at varying Δ (15, 30, and 45 ms) and fixed δ (15 ms), which accounted for the presence of cancer cells and lymphocytes. Cancer cells were modelled as spheres of diameter 15 µm, while lymphocytes of 6 µm [1,2] The intrinsic diffusivity inside/outside the cell was of 2.2 µm2/ms. Synthetic signals were generated at fixed (δ, Δ) (maximum b-value: 500 s/mm2) and corrupted with varying levels of Rician noise: SNR = 10 (low-quality scenario), SNR = 20 (standard clinical scenario), and SNR = 50 (high-signal scenario). Subsequently, a mono-exponential fit enabled the estimation of ADCT at fixed (δ, Δ). We investigated a range of baseline cancer cell densities (10% to 70%) and infiltration levels (LpCC: 0 to 20). The detection threshold (ΔLpCC) was defined as the minimum increase required to achieve non-overlapping 95% confidence intervals in ADCT estimates, over 100 independent noise realizations. Detection rate was calculated as the percentage of all simulated configurations for which a valid ΔLpCC could be defined for each SNR and Δ combination.

Synthetic tumor models demonstrated that increasing lymphocyte infiltration consistently reduces ADCT, though extreme combinations of high baseline cancer cell density and high infiltration are physically bounded by cellular packing limits (Fig. 1). Under standard clinical noise conditions (SNR = 20, Δ = 30 ms), high-density tumors (30–60%) showed superior initial resolution (ΔLpCC 3–4) but suffered from rapid saturation, whereas low-density tumors (10–20%) exhibited lower initial sensitivity (ΔLpCC 6–8) but maintained a more robust, linear response across higher infiltration ranges (Fig. 2A, 2B). Analysis across all imaging configurations revealed that signal quality (SNR) dominates detectability (Table 1) over the technical parameter Δ. Raising the SNR from 10 (low-quality) to 50 (high-signal) drastically expanded the evaluable detection rate from 65% to 89% and significantly improved the mean detection threshold, with mean ΔLpCC dropping from 12.2 to 2.3. Crucially, varying the diffusion time Δ (15, 30, and 45 ms) yielded negligible differences in coverage, mean, and standard deviation of ΔLpCC at any given SNR level, confirming the biomarker's robustness against standard clinical protocol variations.

Our findings reveal that biomarker sensitivity (ΔLpCC) is highly dependent on the tumor cellular characteristics. The superior initial resolution (lower ΔLpCC) in high-density tumors is explained by a more packed environment that results in higher ADCT sensitivity until reaching physical packing limits (Fig. 1, 2). In contrast, low-density tumors show a more linear and stable increase of ΔLpCC on increasing initial lymphocyte concentrations. The suitability of dMRI for detecting changes in TILs is therefore very dependent on tumor characteristics.

The negligible impact of varying diffusion time Δ indicates that TILs changes can be detected in dMRI protocols across different clinical scanner vendors and protocol variations. Our results show that efforts must prioritize maximizing SNR, as signal quality is the primary variable to lowering the detection threshold down to a clinically meaningful resolution (ΔLpCC 2) (Table 1). Future work is warranted to validate these findings on ex vivo and in vivo data.
Daniel NAVARRO-GARCIA (Barcelona, Spain) , Francesco GRUSSU , Raquel PEREZ-LOPEZ
15:45 - 15:48 #54355 - PG143 Mapping liver microstructure with Histo-µSim: Effect of regularization and maximum b-value.
PG143 Mapping liver microstructure with Histo-µSim: Effect of regularization and maximum b-value.

Diffusion MRI (dMRI) is sensitive to microscopic diffusion of water molecules, and therefore can be used to probe the microscopic structure of tissues.[1] To map quantitative tissue parameters from dMRI data multi-compartment tissue models are typically employed.[2, 3] These typically require multiple diffusion times, and/or a wide range of b-values up to strong diffusion weighting,[4, 5] yet still yield an oversimplified description of the tissue. To improve the realism of the modelling, the Histo-µSim framework[6] uses virtual cellular environments, constructed from histological images, to simulate dMRI signals under a range of physiological conditions. The resulting synthetic signals can then be matched to acquired dMRI data. Microstructural tissue parameters, including intracellular volume fraction (f_in), cell size (CS), intrinsic intra-/extra-cellular diffusivities (D(0,in) and D(0,ex), respectively), and cell membrane permeability (κ), can be estimated with stronger correlations to histology compared to multi-compartment models.[6] Aim: to assess the effect of regularisation and the practicality of applying Histo-µSim to ex vivo liver diffusion MRI data with medium diffusion weighting.

Two mouse livers were extracted and fixed in PFA for 24-48 hours, then rehydrated in PBS for 12-24 hours. Ex vivo images were acquired on a 9.4 T Bruker BioSpec system using a 39 mm ID transmit-receive coil. dMRI data was acquired using a SE-MGE sequence (adapted from the REMMI toolbox) with 0.16×0.16×0.30 mm resolution, TR=2s, TE1=26ms, three orthogonal diffusion directions, nominal b={10,200,500,1000,1500,2000} s/mm2, δ=3.5ms, Δ={8,13,18} ms. Data were denoised across b-values, Δ, and directions using tensor MP-PCA.[7] Tissue masks were manually drawn using ITK-SNAP.[8] Microstructural parameter estimation was performed using the Histo-µSim library[6] with pre-calculated synthetic signal arrays. Estimation was performed for a two-compartment, five-parameter model (estimating f_in, CS (volume-weighted), D(0,in), D(0,ex), and κ) and a three-parameter model (estimating f_in, CS, and D(0,ex), with values of D(0,in) and κ fixed to median values of the five-parameter model). Estimation was performed using L2-norm regularization with a range of weights: λ={0,0.0025,0.005,0.01,0.02}. The optimal regularization was determined by change in variance of the parameter distributions, assessed using Levene’s test. This assumes that, in healthy ex vivo tissue, the microstructural parameters are expected to remain relatively consistent across the sample, with most variation arising from noise. Parameter estimation was performed using decreasing sets of b-values, with N={4,3,2}, and b-values removed either from the middle of the set (keeping b_max=2000) or from the end (with b_max={1000,1500,2000}). Parameter values were compared using one-way ANOVA and post-hoc paired t-tests (α=0.05) across the entire volume.

Increasing λ has a significant visual effect on parameter maps (Figure 1), especially CS and D(0,ex). It also affects average parameter values and variance for all parameters in most cases (Figure 2), especially up to the limit of λ=0.01. As such, a value of λ=0.01 was chosen and used for the b-value experiment. Removing b-values increases the variance in some parameter maps (Figure 3), especially CS, and has a small but significant impact on average parameter values (Figure 4). Trends such as increasing f_in or decreasing D(0,ex) when removing b-values while maintaining b_max=2000 s/mm2, are reversed when removing the largest b-values.

We tested the feasibility of using Histo-µSim with different acquisition protocols and assessed the effect of regularisation and maximum b-value on the estimated parameters in ex-vivo mouse liver tissue samples. [9–11] Regularization using the L2-norm improved parameter estimation by reducing the variance in parameters, especially D(0,ex). This is desirable, as the healthy ex vivo liver samples are expected to have uniform parameter distributions, and reducing the noise in parameter maps may mean that genuine pathological changes become more conspicuous. Reducing the available data by retrospectively removing b-values had a statistically significant but small impact on parameter distributions, with trends differing between two conditions (maintaining high maximum b-value, versus removing the largest b-value(s)). While it is possible to reconstruct reasonable parameter maps from limited data, these preliminary findings suggest that further work is needed to optimize acquisition parameters to ensure consistency, when time or hardware limitations necessitate acquiring smaller datasets.

Microstructural tissue parameters can be estimated reliably from medium b-value diffusion data, using the Histo-µSim framework, with regularization improving the visual quality of the parameter maps. Future work will focus on using Histo-µSim to study microstructural tissue changes in disease.
Matthew CHERUKARA (London, United Kingdom) , Wenbo SUN , James ROBERTSON , Timothy ALLEN , Diana CASH , Eugene KIM , Jo HAJNAL , Vicky GOH , Francesco GRUSSU , Po-Wah SO , Andrada IANUS
15:48 - 15:51 #54383 - PG144 Contribution of tensor-valued diffusion-relaxation to histology-based ex vivo human prostate microstructure prediction.
PG144 Contribution of tensor-valued diffusion-relaxation to histology-based ex vivo human prostate microstructure prediction.

MRI-based prostate microstructure characterization is a well-established challenge due to its applicative potential for non-invasive grading of prostate tumors and replacement of biopsies. Indeed, while biopsies remain the gold standard for prostate tumor aggressiveness evaluation via the Gleason score, they are not flawless and lead to upgrading and downgrading in 25 % and 17 % of cases[1] respectively, due to sparse sampling of the organ as well as risk of pain, bleeding, and infection[2]. MRI is a desirable substitution method due to its full spatial coverage, but it requires increased specificity to match biopsy performance. Here, we present an ex vivo study on full prostates characterizing the added value of frequency-dependent tensor-valued diffusion encoding correlated with variable echo and repetition times[3,4] for predicting prostate tissue type derived from histology.

Fifteen human prostates were imaged ex vivo on a 4.7 T magnet in 3D with an isotropic resolution of 820 µm. The SE-EPI sequence embedding modulated gradient waveforms of variable durations and variable TE and TR is shown in Fig. 1a[5,6]. The acquisition protocol of 395 images is presented in Fig. 1b, and the diffusion frequency sampling histogram is displayed in Fig. 1d. The Fig. 2 shows the registration between 3D MRI DTI images acquired at 500 µm isotropic resolution and 2D histology slices using Ants. The gray-scale histology image was registered to 1/ADC, and the structure tensor analysis (STA) image derived from histology was registered to FA via mutual information. Histology images were decomposed into three tissue fractions: stroma cells, epithelial cells, and lumen in QuPath via a pixel clustering model, trained on 8 prostate images and more than 200 ROIs. The results of this decomposition are presented in Fig. 3. The three fraction maps were then used as ground truth to train a Random Forest (RF) model from various subsets of the MRI dataset to quantify the performance of the different encoding dimensions for microstructure prediction.

Fig. 4 panels a, b, and c show the predicted fraction maps from MRI, the original fraction maps derived from histology, and the difference maps for three slices of different prostates for the stroma, epithelial, and lumen fractions. The normalized error in tissue fraction prediction for different subsets of the raw images and the parameter maps of Massively multidimensional diffusion[3,4] is summarized in Fig. 4d. The lumen fraction is better predicted without diffusion, while the stroma and epithelial cell fractions differentiation benefit from all diffusion additions: the sampling of various diffusion frequencies and the tensor-valued encoding. The use of Monte Carlo multidimensional inversion[3,4], yielding parameter maps, is even more beneficial for predicting stroma and epithelial fractions.

The registration of full prostate histology images with MRI images allows defining the relationship between microstructure and MRI contrast at the voxel level and gives the possibility to train Machine Learning models to link them on a large number of voxels. While the accuracy of such models remains limited due to registration errors and intrinsic thickness differences between histology (3 µm) and MRI slices (800 µm), it still allows quantifying the added value of each MRI contrast for microstructure prediction. The results presented in Fig. 4 show that a simple T1/T2 contrast is sufficient to distinguish the Lumen/fixative solution from the stroma and epithelial tissues. On the contrary, distinguishing the latter two benefits from frequency-dependent and tensor-valued diffusion encoding. The introduction of a compartment model with a high degree of freedom, such as the Monte Carlo inversion used in massively multidimensional imaging, is also beneficial compared to raw images, likely due to the added encoding information and the production of high-SNR parameter maps.

This study shows the added value of complex diffusion encoding for microstructure prediction of ex vivo human prostate, even with a simple objective: distinguishing stoma epithelial and lumen fractions. We expect this effect to be reinforced when trying to distinguish more subtle subcategories: the various Gleason scores or confounding factors such as hyperplasia or immune cell accumulation.
Maxime YON (Rennes) , Solène-Florence KAMMERER-JACQUET , Romain MATHIEU , Pierre-Antoine ELIAT , Sara GROHN , Omar NARVAEZ , Melina ESTELA , Alejandra SIERRA , Oscar ACOSTA , Pascal HAIGRON
15:51 - 15:54 #54624 - PG145 Surface-to-Volume Ratio Mapping of Brain Organoids and Fiber Phantoms Using 28.2T High-Frequency OGSE.
PG145 Surface-to-Volume Ratio Mapping of Brain Organoids and Fiber Phantoms Using 28.2T High-Frequency OGSE.

Diffusion MRI (dMRI) can characterize cellular and subcellular structures and conventionally relies on Pulsed Gradient Spin-Echo (PGSE) sequences[1,2]. Oscillating Gradient Spin-Echo (OGSE) enables shorter diffusion times and estimation of the intrinsic diffusivity (D0) and surface-to-volume (S/V) ratio, providing biophysical, model-independent indicators of medium composition and microstructure[3]. Achieving high gradient oscillation frequencies and adequate diffusion weighting requires extreme gradient amplitudes and very fast switching rates, which remains a primary challenge in OGSE implementation[4]. This limitation can be alleviated by advanced hardware[5,6], since stronger gradients with higher slew rates permit reaching higher frequencies for a given b-value. Concomitantly, the validation of microstructural markers from dMRI requires high-fidelity measurements in model samples. In this work, we present results for improved high-frequency OGSE waveforms and rapid imaging readout at a 28.2T commercial spectrometer. This setup enables rapid imaging with resolutions of 50μm[6-8]. We show feasibility of measuring diffusivity-frequency dependence D(ω) and S/V estimates in fiber phantoms at two different temperatures and brain organoids. For the phantom sample, S/V estimates are compared with a high-resolution gradient echo(GRE) image.

Samples Two living cortical brain organoids (DIV55-110)[9] were transferred via a glass pipette into a 5mm MR tube atop an agar substrate in medium. A phantom (PreOperative Performance) consisting of polymeric fibers with 25μm diameter was prepared in a 3mm MR tube in 5% PVA with 90μM MnCl2. Spectrometer A 28.2T NMR spectrometer (Bruker, Avance Neo console) was used with an IProbe (ParaVision 360 3.3) containing a 5mm RF coil and a 3T/m gradient insert with a slew rate of 30000T/m/s. 20°C and 37°C were probed for experiments on the phantom, and 37°C for cortical organoid measurements. MRI experiments High-frequency trapezoidal waveforms were created with weighted-mean frequencies of 414, 518, 621, 722Hz (Fig.1), and the duration of 11ms. The waveform had maximum slew-rate 29639T/m/s, maximum gradient 3000 mT/m, and b-value 0.478ms/μm². One b0 image and 4 directions ([1,1,1],[-1,-1,1],[-1,1,-1],[1,-1,-1]) were acquired. The GRE sequence was acquired with α=42°, TR=220ms, TE=3.2ms, NA=192, slice thickness=40µm, matrix size=300x300 with FOV=2.4x2.4 mm², resulting in-plane resolution of 8x8μm². Data analysis Raw data were denoised using tensor MPPCA[10]. Eddy current geometric distortions and motion were corrected in ExploreDTI[11]. The frequency-dependent apparent diffusion coefficient D(ω), S/V ratios and D0 values were estimated from the expression of the OGSE-measured apparent diffusion coefficient D in the short-time regime[7-13]. To validate S/V estimates in the phantom, individual fibers in the GRE image were segmented[14] and their center points determined. From this, an S/V map was created with the resolution of the dMRI data by determining the total arc length of circles with 25μm diameter within a pixel (S) and the total surface area of each voxel not containing fibers(V).

High-frequency trapezoidal OGSE waveforms with a maximum frequency of 722Hz and a b-value of 0.478 ms/μm⁻² were implemented at 28.2 T(Fig.1). Fig.2 shows the frequency dependence of the signal and the estimated D(ω), and the mean D(ω) is plotted versus 1/√ω for cortical organoids. At the tested frequencies, no strong frequency or directional dependence of D(ω) was observed in organoids. Fig.3 presents D0 and S/V estimates as 2D maps and distributions for the organoid with D0 in the range 1–3 μm² ms⁻¹ and S/V in the range 0.5–2.5 μm⁻¹ For the phantom D0 estimates at 20°C and 37°C are in the expected range for free water (Fig.4). S/V estimates obtained from dMRI and GRE data, although noisy, show similar patterns.

We demonstrated that optimized gradient waveforms and state-of-the-art hardware enabled frequencies up to 722Hz, corresponding to diffusion times of 0,19 ms[15]. D0 and S/V match previously reported values obtained with different waveforms and lower frequency ranges in cortical organoids[7], and remain at the upper end of the range reported for mouse gray matter[12]. In the phantom D0 varies with temperature and the mean values approach the diffusivity of free water, with the small offset likely attributable to the 5%PVA content in the sample. S/V distributions show lower dependence on temperature. Comparison of OGSE- and GRE-derived S/V maps reveals similar spatial patterns yet a discrepancy in magnitude; further experiments are required to identify the origin of this discrepancy (e.g. surface relaxation).

This work implemented high-frequency OGSE and S/V mapping at ultra-high field on model samples, including fiber phantoms and living organoids, which, when subjected to subsequent microscopy, can provide a complementary means to preclinical imaging for validation of microstructural MRI markers.
Tatiana NIKOLAEVA (Utrecht, The Netherlands) , Maxime YON , Paula DEL POPOLO , Yuchen QIU , Julia R.KRUG , Chantal M.W. TAX
15:54 - 15:57 #54308 - PG146 Distinct microstructural diffusion MRI signatures in directed and undirected cortical organoids.
PG146 Distinct microstructural diffusion MRI signatures in directed and undirected cortical organoids.

Cortical development shapes cognitive function and brain health, with abnormalities linked to neurological disorders[1,2]. Brain organoids derived from human induced pluripotent stem cells (hiPSCs) offer a promising in vitro model, replicating key developmental features[3]. In[4], authors explored diffusion MRI (dMRI) sensitivity to capture microstructural organization in cortical organoids, revealing time-dependent mean diffusivity (MD) consistent with transmembrane water exchange. Here, we expand this work by comparing two organoid batches generated under two distinct growth protocols (directed vs. undirected) and scanned at comparable maturation stages. Directed organoids are pushed toward a strict, uniform architecture for consistent development, resulting in more homogeneous organoids in terms of cell density and organisation[5]. It is frequent to end up with a necrotic core and live cells at the periphery. Undirected organoids develop multiple random cell types, ending in organoids with more diversity in cell density and organisation[6,7]. We apply diffusion tensor and kurtosis imaging (DTI/DKI) and the NEXI model [8] across multiple diffusion times (Δ) to assess whether dMRI can non-invasively distinguish microstructural organization arising from different growth protocols.

Two batches of three cortical organoids (3–5mm) were generated through a 3D culture system at the NeuroNA HCNP (Fondation Campus Biotech Geneva). Batch 1 (B1) comprised directed organoids at 4.5 months; Batch 2 (B2) comprised undirected organoids at 6 months. Both batches were fixed in 4% paraformaldehyde, washed in PBS and embedded in agarose. Samples were scanned on a 9.4T Bruker MRI with a Rat CryoProbe. Multi-shell dMRI was acquired with a PGSE-EPI sequence at b-values [1, 2, 3.5, 5, 7]ms/μm² and Δ = [15, 26, 38]ms (δ=4.5ms, TE/TR=54/2400ms, 0.2mm in-plane). Scan time was 50min per Δ. dMRI pre-processing included Patch2Self denoising[9], Gibbs correction and susceptibility, eddy current and motion correction[10]. DTI and DKI were fitted per Δ using weighted least squares[11]. NEXI was then fitted with Rician correction, using noise maps estimated from MP-PCA denoising of high-SNR images (b=0 and b=1ms/μm²)[12]. For B1, inner and outer rings were manually segmented from b=0 images; B2 organoids were segmented individually. For all organoids, voxel-wise DKI metrics were radially profiled by binning normalized centroid distances (10 bins, 0=center, 1=periphery), and intra-batch reproducibility was assessed via mean Pearson r across organoid radial profile pairs. B2 underwent post-scan DAPI confocal fluorescence staining to assess cell nuclei distribution.

The dMRI protocol yielded high-quality signals across all samples (Fig1). DKI maps (Fig2) revealed markedly different spatial organization across batches. B1 organoids showed a consistent radial pattern across all metrics and diffusion times: MD and FA were higher in the outer ring, while MK and neurite fraction (f) were elevated in the inner ring (f=0.54 vs 0.32), despite lower inner-ring FA. B2 organoids displayed a more patchy, heterogeneous spatial distribution, with higher FA than B1 (Δ=38ms: mean 0.18 vs 0.10) but lower MD, and markedly longer exchange times (tex median: 39ms vs 17ms). Radial profile analysis (Fig3) further showed that B1 organoids display tightly overlapping profiles across all metrics and diffusion times (MD: |r|=0.95–0.96; FA:0.74–0.80; MK:0.977–0.982), while B2 showed substantially lower intra-batch similarity (MD:0.60–0.66; FA:0.14–0.22; MK:0.49–0.88).

B1 organoids displayed consistent radial organization, reflected by high intra-batch radial profile similarity (MD:|r|=0.95–0.96; FA:0.74–0.80; MK:0.977–0.982), while B2 (undirected) showed heterogeneous, patchy distributions and substantially lower consistency (FA:|r|=0.14–0.22). DAPI staining corroborated this heterogeneity in B2 (Fig1). These observations align with the biological differences between protocols described above. High f despite low FA in the inner ring suggests abundant but randomly oriented restricted compartments, while higher outer-ring FA may reflect early neuronal alignment. Undirected organoids, which generate more diverse structures including ventricle-like zones and patches of varying cell density, produce dMRI signatures distributed across multiple scattered regions rather than following a homogeneous pattern.

dMRI sensitively distinguishes microstructural organization arising from distinct cell density and spatial distribution. With further validation, brain organoids could serve as biologically grounded phantoms for developmental dMRI, providing a unique ground truth for biophysical models of early cortical microstructure.
Andrés LE BOEUF FLÓ (Lausanne, Switzerland) , Jonathan RAFAEL-PATIÑO , Oriana LAVIELLE , Katarzyna PIERZCHALA , Ekin TASKIN , Theo RIBIERRE , Rita OLIVEIRA , Thanh Phong LÊ , Ileana O. JELESCU , Jean-Philippe THIRAN , Erick Jorge CANALES-RODRÍGUEZ , Elda FISCHI-GOMEZ
15:57 - 16:00 #54519 - PG147 Neuroinflammation-related microstructural alterations using kurtosis time-dependence.
PG147 Neuroinflammation-related microstructural alterations using kurtosis time-dependence.

During brain inflammation, pro-inflammatory mediators trigger a cascade of cellular and molecular events, including the activation of microglia and astrocytes. Activation of these glial cells promotes the release of cytokine and chemokines, leading to changes in cellular morphology, increased in microglia recruitment, disruption of cellular spatial organisation, and potential membrane permeability[1-3]. Altogether, these microstructural alterations in cellular signalling, morphology, and density can dramatically influence the complexity of water diffusion within the tissue environment which can be detected using diffusion kurtosis imaging (DKI). DKI is commonly used to probe microstructural complexity[4,5]; however, the influence of diffusion time on diffusion kurtosis remains largely unexplored. Time-dependent diffusion measurements may provide sensitivity to distinct microstructural features as water molecules probe different length scales. For example, at relatively short diffusion times, water motion is influenced by local microstructural barriers, and diffusion may appear as non-gaussian. As diffusion time increases, water experiences exchange and distribution across compartments, appearing more gaussian, leading to a decrease in kurtosis[6,7]. In this study, lipopolysaccharide (LPS) was used to induce an inflammatory response over a 24h period to investigate the effects of acute neuroinflammation on time-dependent diffusion kurtosis.

Seven Wistar–Han rats were scanned at two time points: baseline (prior to LPS administration) and 24h following intraperitoneal LPS injection (E. coli O55:B5; 1 mg/kg). Diffusion MRI data were acquired on a 7 T preclinical scanner (Bruker Avance III console, Agilent magnet) equipped with a 2-channel head coil and gradients of 375 mT/m. Images were acquired using a PGSE-EPI sequence with diffusion sensitisation applied along 30 directions (b-values=1000, 2000, and 3000 s/mm²) and five b=0 images. Five diffusion times were investigated (Δ=20, 30, 40, 50, and 60 ms) with a diffusion gradient duration of δ=7 ms. Acquisition parameters were: TR/TE=2000/77.7 ms, spatial resolution=0.25 × 0.25 × 1 mm³. Animals were anaesthetised with isoflurane (5% induction, ~2% maintenance) in 100% oxygen (1.0 L/min). Body temperature and respiration rate were continuously monitored throughout the scans. DKI-derived maps (mean, axial and radial kurtosis) were computed using DIPY in Python (v3.12.8). Parameters extracted from regions of interest placed in the cortex, corpus callosum, and striatum were analysed using a linear mixed-effects model (LMM), with diffusion time and group included as fixed effects and subject as a random effect. The analysis specifically aimed to assess diffusion time–group interactions.

Figure 1. Group-averaged DKI maps revealed intensity differences characterised by increased diffusion kurtosis in the LPS group compared with baseline, particularly in the somatosensory cortex, striatum, and corpus callosum. Estimated marginal means derived from the LMM analysis demonstrated significant differences in group intercepts (p < 0.0001), together with non-parallel diffusion time-dependent trajectories between baseline and LPS conditions. Figure 2. Histological samples of Iba1 (microglia), GFAP (astrocytes) and MBP (myelin) staining in the cortex, corpus callosum and striatum showed increased branching complexity for Iba1 and GFAP in the LPS group. Differences were also observed in average branch length and total area. In addition, cross-sectional analysis of white matter bundles in the striatum revealed alterations in perimeter and circularity in the LPS group compared with saline controls.

Our findings demonstrate that DKI is sensitive to microstructural abnormalities 24h following LPS administration. Compared with baseline, the LPS group exhibited higher intercepts in mean, radial, and axial kurtosis, suggesting a more complex cellular environment. Furthermore, the temporal evolution of kurtosis differed between groups: in the LPS condition, peak kurtosis appeared delayed, while the subsequent decay either plateaued or increased after an initial decrease. In contrast, baseline measurements displayed a more monotonic decay pattern. Alterations observed at longer diffusion times may reflect changes in inter-compartmental water exchange associated with neuroinflammatory processes. Taken together, these findings suggest that LPS-induced inflammation leads to a more complex and less structurally organised tissue environment. Future work will investigate shorter and longer diffusion times to better characterise both peak kurtosis and the asymptotic decay regime required for two-compartment exchange modelling (e.g., the Karger model). Additional histological validation targeting aquaporin water channel proteins will also be performed.

This study demonstrates that diffusion time-dependent kurtosis is sensitive to microstructural alterations associated with LPS-induced neuroinflammation.
Paulina J VILLASEÑOR (Manchester, United Kingdom) , Ben LEVERTON , Will MORREY , Graham COUTTS , Catherine LAWRENCE , Ben DICKIE
16:00 - 16:03 #54623 - PG148 Diffusion tensor imaging changes in the bilateral corticospinal tract and cerebral peduncle of ALS patients.
PG148 Diffusion tensor imaging changes in the bilateral corticospinal tract and cerebral peduncle of ALS patients.

Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disorder with clinically challenging diagnosis, affecting upper and lower motor neurons [1,2]. Therein, diffusion tensor imaging (DTI) provides quantitative assessment of white matter integrity, particularly within the corticospinal tract (CST) and cerebral peduncle (CP) [3,4], which are major motor pathway structures commonly affected in ALS. Among DTI metrics, fractional anisotropy (FA), axial diffusivity (AD), and apparent diffusion coefficient (ADC) have shown potential utility in ALS evaluation [5]. While previous DTI studies in ALS have primarily focused on FA within CST [6], with several studies also evaluating AD and ADC [7], very few studies have simultaneously investigated bilateral CST and CP regions using a standardized ROI-based approach in MNI space [8]. Accordingly, the aim of this study was to characterize bilateral CST and CP diffusion abnormalities in ALS using ROI-based FA, ADC, and AD measurements obtained from a standardized MNI-space analysis pipeline.

In this IRB approved study, from a retrospective cohort of 33 patients with ALS and 38 healthy controls, an age- and sex-matched subset of 20 patients with ALS (10 males/10 females; mean age: 52.30 ± 10.42 years) and 20 healthy volunteers (10 males/10 females; mean age: 51.05 ± 10.07 years) were analyzed. DTI data were acquired on a 3T Siemens Prisma Fit scanner using a diffusion-weighted echo-planar imaging sequence (TR = 5500 ms, TE = 69 ms, slice thickness = 2.6 mm, in-plane resolution = 2.05 × 2.05 mm², 51 volumes). Scanner-derived FA, ADC, and AD maps were analyzed using FSL software package [9]. BET was used for obtaining brain ROIs, wherefrom DTI maps were registered to the FMRIB58_FA 1-mm MNI template using FLIRT [10]. ROIs corresponding to the left and right CST and CP were derived from the JHU ICBM-DTI-81 white-matter labels atlas in MNI space, and mean values of FA, ADC, and AD for each ROI were extracted from each ROI were calculated. Group comparisons between ALS patients and healthy controls were performed using Welch’s independent samples t-tests and Mann-Whitney U tests. Effect sizes were reported using Cohen’s d-. Statistical analyses were performed in MATLAB® R2025b (MathWorks, Natick, MA, USA) [11].

FSL-based pipeline demonstrated appropriate alignment between the MNI-registered diffusion metric maps and CST/CP ROIs (Figure 1). Compared with healthy controls, ALS patients demonstrated significantly lower FA values (p=0.000677, p=0.001405, p=0.041000) together with significantly higher ADC (p=0.047000, p=0.039000) and AD (p=0.018000, 0.021000) values across both CST and CP regions, with the most prominent alterations observed within the bilateral CST (Figure 2). Significant FA reductions were observed in the left CST (Welch’s p = 0.001405; Cohen’s d = -1.090) and right CST (Welch’s p = 0.000677; Cohen’s d = -1.172). ADC and AD values were elevated in ALS patients, particularly within the CST, while CP regions demonstrated similar but less pronounced diffusion abnormalities. Mann-Whitney U tests demonstrated comparable findings across all diffusion metrics and ROIs. Detailed statistical results are summarized in Table 1.

Reduced FA values together with increased ADC and AD values were observed within the CST and CP regions in patients with ALS. These findings are consistent with motor white matter degeneration and support the potential utility of DTI metrics as imaging biomarkers of upper motor neuron involvement in ALS. Broader and more heterogeneous ADC and AD distributions were observed within the ALS cohort, particularly in the bilateral CST regions, whereas healthy controls demonstrated more compact and homogeneous distributions. Similarly, FA values in ALS patients were shifted toward lower values with increased spread compared with controls. These findings may reflect inter-patient variability in the severity and extent of motor white matter degeneration in ALS. Future studies including larger cohorts and additional diffusion metrics may further improve characterization of ALS-related white matter abnormalities.

ALS patients demonstrated reduced FA values together with increased ADC and AD values within CST and CP regions, with the most prominent alterations observed in the bilateral CST. These findings are consistent with motor white matter degeneration and further support the potential role of DTI metrics as imaging biomarkers in ALS.
Yıldız TÜZÜN (Türkiye, Turkey) , Barış İŞAK , Dilaver KAYA , Alp DINÇER , Esin ÖZTÜRK IŞIK , Alpay ÖZCAN
16:03 - 16:06 #54645 - PG149 Magnetic Resonance Imaging of Early Microstructural Changes in Amyotrophic Lateral Sclerosis.
PG149 Magnetic Resonance Imaging of Early Microstructural Changes in Amyotrophic Lateral Sclerosis.

Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease involving progressive degeneration of upper and lower motor neurons. While spinal cord pathology in ALS has been extensively investigated, cortical degeneration and associated white matter alterations remain less well understood. The G93A-SOD1 mouse model reproduces key pathological features of familial ALS [1-5] and provides a valuable platform for identifying potential imaging biomarkers. Diffusion MRI (dMRI) is sensitive to ALS-related pathology [4, 6-13], but DTI [14] and DKI [15, 16] have limited biological specificity. Biophysical models such as the white-matter Standard Model (SM) [17] and gray matter exchange models (SMEX [18]/NEXI [19]) may provide more specific markers of axonal and neurite microstructure. Here, we acquired ex-vivo high-resolution dMRI in early post-symptomatic G93A-SOD1 mice and estimated DKI, SM, and SMEX parameters to assess early cortical and white matter degeneration and identify candidate MRI biomarkers for translational ALS research.

Brains from G93A-SOD1 ALS mice and age-matched wild-type controls (WT; N=10/group, 5 females/group; age 90 days) were fixed in 2%GA+4% PFA, washed in PBS and scanned ex vivo at 16.4T using EPI with 41 coronal slices, 30 diffusion directions, 75×75×300 µm³ resolution, δ=4 ms, and TE/TR=42/6000 ms. DKI/SM data were acquired with 20 b-values (0.25–16 ms/µm²) at Δ=10 ms, while SMEX data used 14 b-values (0.25–10 ms/µm²) across six diffusion times (8–25 ms). Data was denoised using tensor MP-PCA [20], Rician noise corrected [21], co-registered [22], and normalized to the estimated b=0 image. DKI parameters were estimated using voxel-wise nonlinear least-squares fitting for b-values up to bD≈1, and SM and SMEX parameters were estimated using nonlinear fitting with variable projection [18, 23]. Analyses focused on motor cortex regions (M1 and M2), corpus callosum (CC) and corticospinal tract (CST). ROIs were extracted from the Allen Mouse Brain Atlas [24, 25] and registered using ANTs [26]. Group differences were assessed by one-way ANOVA, followed by BH FDR correction [27]. Mean differences, 95% confidence intervals, and Hedges’ g effect sizes were reported.

Figures 1–4 show ROIs, representative parameter maps, ROI distributions, and statistical summaries. In gray matter, only MKT in M2 showed a significant (p<0.05) uncorrected group difference, with lower MKT in SOD1 mice (p=0.008; ∆mean = -0.03 [-0.05, -0.01]; g = -1.30). However, this effect did not survive FDR correction. In white matter, MKT in CST was statistically reduced in SOD1 mice (p=0.015; ∆mean = -0.12 [-0.20,-0.03]; g = -1.19), but this effect did not survive FDR correction. Among SM parameters, axonal signal fraction was reduced in CC in SOD1 (p=0.041; ∆mean = -0.02 [-0.05,-0.001]; g = -0.96), and intra-axonal diffusivity was significantly increased in both CC and CST (CC: p=0.032; ∆mean = 0.11 [0.01,0.20]; g = 1.02. CST: p=0.031; ∆mean = 0.10 [0.01,0.19]; g = 1.02). No effects survived FDR correction.

This study supports the potential of advanced diffusion MRI models to detect early ALS-related microstructural alterations in both cortical and white matter regions in G93A-SOD1 mice. In cortical GM, reduced MKT in M2 may indicate decreased tissue complexity and diffusion heterogeneity, which may arise from neuronal loss, dendritic simplification, or glial alterations in SOD1. The localization of this effect to M2 rather than M1 suggests region-specific cortical vulnerability during early ALS progression. In contrast, SMEX-derived parameters showed no significant differences, suggesting that neurite density and exchange-related properties may remain relatively preserved or fall below the sensitivity of the current acquisition framework. In white matter, reduced MKT in CST suggests disruption of axonal organization and tissue heterogeneity, consistent with known CST involvement in ALS [28-30]. Furthermore, increased intra-axonal diffusivity (Da) in CC and CST may reflect axonal degeneration, altered diffusion barriers, or selective loss of smaller axons. These findings indicate that SM-derived metrics may provide biologically meaningful information beyond conventional DKI measures. Two limitations should be acknowledged. First, the relatively small sample size reduced statistical power after multiple-comparison correction. Second, imaging was performed at a relatively early disease stage, where pathological changes are expected to be subtle. Nevertheless, the observed effect sizes and region-specific trends highlight the promise of advanced diffusion MRI as a translational imaging biomarker for early ALS pathology.

Advanced diffusion MRI, particularly DKI and SM parameters, showed sensitivity to early ALS-related microstructural alterations in cortical and white matter regions of G93A-SOD1 mice, supporting the translational potential of biophysical diffusion modeling for early ALS biomarker development.
Nayereh GHAZI (Aarhus, Denmark) , Brian HANSEN , Stine HASSELHOLT , Jens R. NYENGAARD , Ilary ALLODI , Santiago MORA PARADA , Matthew BROADHEAD , Gareth MILES , Alyssa CORBETT , Niels C. NIELSEN , Noam SHEMESH , Sune N. JESPERSEN
16:06 - 16:09 #54549 - PG150 Coronary artery revascularization type and disease severity is linked with alterations in normal-appearing white matter microstructure.
PG150 Coronary artery revascularization type and disease severity is linked with alterations in normal-appearing white matter microstructure.

Coronary artery disease (CAD) is associated with cognitive decline [1], stroke [2] and white matter injury [3, 4]. Prior quantitative MRI (qMRI) work has identified myelin loss and iron deposition in normal-appearing white matter (NAWM) in CAD, particularly in watershed (WS) borderzone regions that are vulnerable to hypoperfusion [5]. Coronary artery bypass grafting (CABG) and percutaneous coronary intervention (PCI) restore myocardial perfusion but differ in invasiveness [6, 7], neurological risk such as myocardial infarction (MI) [8] and the complexity of disease [9]. Whether NAWM abnormalities differ by revascularization type or CAD severity remains unclear. We examined whether CABG versus PCI, MI history and higher SYNTAX score were associated with lower myelin-sensitive magnetization transfer saturation (MTsat) and higher iron-sensitive magnetic susceptibility in WS and non-watershed (NWS) NAWM

This cross-sectional study included 44 cognitively-intact adults aged 50 years or older with documented CAD and revascularization data: 12 underwent CABG and 32 PCI. MRI data were acquired on a 3T Siemens Skyra. An MPRAGE, and axial T2-FLAIR images were acquired for tissue segmentation. A 3D multi-coil multi-echo GRE phase and magnitude data were acquired for QSM, with flow compensation on the first echo [10]. The MTsat maps were calculated using the hMRI-toolbox (v0.3.0) [11]. The phase data of multi-coil ME-GRE data was combined and unwrapped using ROMEO [12]. X maps were reconstructed using TGV-QSM [13]. NAWM was segmented using BISON [14]. A cerebral arterial territory atlas was applied to extract watershed regions at the intersection between the anterior cerebral artery (ACA), middle cerebral artery (MCA), posterior cerebral artery (PCA) regions (Figure 1) [15]. Regional mean MTsat and susceptibility were calculated and using ANCOVAs comparing CABG with PCI and myocardial infarction (MI) with non-MI, adjusted for age, sex and time since intervention. Multivariable linear regressions tested associations with SYNTAX score using the same covariates. False discovery rate correction was applied for multiple comparisons.

Table 1 shows the demographic data and Table 2 shows the clinical health profile of the participants. The CABG and PCI groups did not differ significantly in demographic or hemodynamic measures or MMSE scores. The CABG group had higher mean SYNTAX scores than the PCI group, reflecting greater CAD complexity. In WS NAWM (Figure 2), CABG was associated with significantly higher susceptibility in the total WS, ACA_MCA and PCA_VB regions, reflecting iron deposition. CABG was also associated with significantly lower MTsat in the total WS region and the ACA_MCA and MCA_PCA borderzones, consistent with lower myelin content. In NWS NAWM, there was no significant difference. Higher SYNTAX score was not significantly associated with susceptibility in either WS or NWS regions. Conversely, higher SYNTAX score was significantly associated with lower MTsat in ACA_MCA and MCA_PCA WS and in total, ACA and MCA NWS regions, indicating widespread decreased myelin content with increasing disease severity (Figure 3). No significant MTsat or susceptibility differences were observed between participants with and without prior MI.

Individuals who underwent CABG showed poorer NAWM microstructural integrity than those who underwent PCI, with abnormalities in vulnerable WS regions. Lower MTsat together with higher susceptibility in WS NAWM suggests that decreased myelin content may coexist with iron deposition, potentially reflecting chronic vascular injury, neuroinflammatory processes [16], blood-brain barrier disruption [17], hypoperfusion [18] or microembolism [19]. In contrast, CAD severity was associated with MTsat but not susceptibility, suggesting that coronary plaque burden is linked to demyelination rather than to iron accumulation. The absence of associations with MI status suggests that the observed abnormalities may relate to chronic vascular disease burden and/or revascularization-associated factors rather than a single infarction event. However, the cross-sectional design cannot determine whether abnormalities were present before intervention or developed afterward. Interpretation is also limited by the small, sex-unbalanced cohort and the absence of pre-intervention brain and cerebrovascular measurements.

This study found that CABG, compared with PCI, is associated with microstructural abnormalities in NAWM, particularly in vulnerable watershed regions. These alterations mainly reflect reduced myelin content along with increased iron accumulation, suggesting neuroinflammatory processes. Higher coronary plaque burden was also associated with lower myelin content in NAWM. Overall, the findings emphasize the vulnerability of watershed white matter in coronary artery disease and suggest that preserving white matter integrity may support cognitive function following invasive coronary interventions.
Ali REZAEI (Montreal, Canada) , Stefanie A. TREMBLAY , Safa SANAMI , Zacharie POTVIN-JUTRAS , Lindsay WRIGHT , Ilana R. LEPPERT , Christine L. TARDIF , Anil NIGAM , Josep IGLESIES-GRAU , Philippe L. L'ALLIER , Louis BHERER , Claudine J. GAUTHIER
16:09 - 16:12 #54693 - PG151 Evaluating MTV-correction in MRI models for in vivo brain iron estimation.
PG151 Evaluating MTV-correction in MRI models for in vivo brain iron estimation.

Quantitative MRI measures such as effective transverse relaxation rate (R2*) and magnetic susceptibility (χ) are sensitive to brain iron content, but both metrics are also influenced by non-iron tissue components, particularly diamagnetic myelin. Earlier work showed that macromolecular tissue volume (MTV) captures in vivo myelin-related variation [1,2]. Previous studies, including [3], proposed linear models incorporating MTV into R2* and χ to account for myelin-related effects. However, the advantages and generalisability of iron estimation using myelin-corrected models across different histological reference datasets and fitting strategies remain unclear.

Linear relationships between MRI measurements and histological iron concentrations were evaluated using regional brain measurements from 26 subjects with R2* and susceptibility (χ) data compared with histological iron references in 11 ROIs from [4] published dataset. The following models were tested: Eq1. R2* = a1*Iron + b1*MTV+c1, Eq 2. χ = a2*Iron + b2*MTV+c2, where a1, b1, c1, a2, b2, c2 were assumed to be global constants across subjects and brain regions. Models were fitted both separately and simultaneously, evaluated with and without the MTV term (b1 and b2 fixed at 0) using linear mixed-effects models in Python to account for repeated regional measurements within subjects. Simultaneous fitting of the R2* and χ equations was performed using a least-squares approach. Subject-wise cross-validation was applied with 5/26 subjects held out for testing. The procedure was repeated for 1000 iterations, and the median R^2 score was reported to evaluate prediction of iron-related components in unseen subjects. To determine whether inter-subject variability represented meaningful biological differences relevant for subject-specific iron estimation, scan-rescan variance from repeated acquisitions was used to estimate within-subject noise variance, while inter-subject variance was computed across the cohort for each region. The fraction of variance attributable to biological inter-subject differences was quantified using the intraclass correlation coefficient (ICC).

Model performance differed substantially between histological reference datasets. Using the Hallgren and Sourander dataset, the highest iron prediction accuracy was achieved with simultaneous fitting of Equations 1 and 2 without MTV (with/without MTV R^2 = 0.65/0.85). In contrast, separate fitting yielded lower performance, with R2* models (Eq. 1) reaching R^2 = 0.65/0.75 with/without MTV, and χ models (Eq. 2) reaching R^2 = 0.75/0.77 with/without MTV correction. Inclusion of an interaction term between iron and MTV in the mixed-effects models did not lead to improved prediction accuracy, indicating limited evidence for a strong multiplicative interaction between iron- and MTV-related contributions in these data. To evaluate whether subject-specific modelling was supported by biologically meaningful variability beyond measurement noise, inter-subject variability within the ROIs was further assessed using ICC analysis. R2* demonstrated substantially greater biologically driven inter-subject variability compared with χ and MTV. In deep gray matter structures, R2* showed high ICC values (0.86 in the putamen, 0.83 in the globus pallidus, and 0.56 in the caudate), whereas cortical regions exhibited considerably lower ICC values (0.03–0.40). In contrast, χ showed only moderate variability, with the highest ICC observed in the globus pallidus (0.56), while MTV demonstrated moderate ICC values in the caudate (0.63) and putamen (0.58).

Incorporating MTV into iron-estimation models did not provide a consistent improvement across fitting strategies. While simultaneous fitting of R2* and χ substantially improved prediction accuracy, the best-performing model excluded MTV, suggesting that myelin-related correction does not necessarily enhance generalisable iron estimation in vivo. This may reflect the close spatial association between myelin and iron distributions across brain regions, although further investigation in region-specific models may clarify conditions under which MTV provides additional benefit. Importantly, the ICC analysis demonstrated that a substantial proportion of the R2* variability, particularly in deep gray matter structures, reflected true inter-subject biological differences rather than measurement noise. These findings motivate further investigation of subject-specific iron-estimation models in deep gray matter regions and suggest that R2* may provide particular benefit for capturing inter-individual variability in these structures.

Simultaneous modelling of R2* and χ provided the highest accuracy for iron estimation, whereas inclusion of MTV did not consistently improve model performance. These findings suggest that combining complementary iron-sensitive MRI contrasts may be more beneficial for robust in vivo iron estimation than applying simple MTV-based myelin correction models.
Maryana POZINA (Jerusalem, Israel) , Jose P. MARQUES , Aviv MEZER
16:12 - 16:15 #54525 - PG152 Feasibility of deep learning-based T2 mapping for multi-echo TSE-EPI with partial-Fourier first-echo sampling.
PG152 Feasibility of deep learning-based T2 mapping for multi-echo TSE-EPI with partial-Fourier first-echo sampling.

Combined diffusion-relaxometry provides insight into tissue microstructure beyond diffusion or relaxometry alone [1]. Diffusion-weighted multi-echo EPI acquisition offers a practical way toward joint ADC and T2 mapping by combining diffusion weighting with multiple echo times. In a novel three-echo turbo-spin-echo (TSE) EPI sequence, the first echo is partial Fourier (PF) sampled due to diffusion-gradient timing constraints, while the later echoes are fully sampled. This echo-dependent sampling can affect T2 estimation by errors introduced when compensating for the missing PF k-space before image-domain fitting. Learning-based PF reconstruction has been investigated for diffusion-weighted [2] and complex-valued MRI image recovery [3] but mainly targets image reconstruction rather than direct quantitative mapping. Here, we evaluate whether a neural network can estimate T2 maps from zero-filled PF triple-echo reconstructions and improve T2 accuracy compared to conventional PF recovery followed by nonlinear least-squares (NLLS) fitting.

The three-echo TSE-EPI sequence is built with PyPulseq [4] and used as the simulation forward model (Fig.1). It consists of one excitation pulse followed by three RF refocusing pulses, producing three spin-echo EPI readouts within one TR. The first readout is 6/8 PF sampled; the second and third are fully sampled. A fixed x-direction diffusion-weighted condition (b=500 s/mm2) is simulated to preserve the intended diffusion-relaxometry setting, but only T2 estimation is evaluated. Ramp-sampled readouts are re-gridded onto a Cartesian kx grid before Fourier reconstruction. Our framework (Fig.2) uses zero-filled reconstructed magnitudes as input and directly estimates T2. The network input includes three echo magnitudes plus two derived channels: the Echo2/3 log-ratio and the analytical Echo2/3 T2 estimate. The model follows a residual design in which a U-Net [5] predicts a correction to the analytical T2 estimate and is trained with a brain-masked weighted L1/L2 loss. The network is built with PyTorch [6]. Triple-echo k-space and ground-truth T2 maps are simulated with MR-zero [7] from 20 BrainWeb [8] 3T phantoms with WM, GM, and CSF tissues. Phantoms are resampled to 96x96x64 and 2D slices are simulated at 2.33mm in-plane resolution. No additive noise is included. Slices >50 brain-mask voxels are retained, yielding 1117 slices, split by subject into 8:1:1 train/validation/test sets (893/112/112 slices). Conventional baselines reconstruct the first PF readout using zero-filling, POCS [9], or homodyne [10]; the second and third echoes are reconstructed from fully sampled k-space. Baseline T2 maps are then estimated voxel-wise from the three echo magnitudes using mono-exponential NLLS. Evaluation used test-set mean absolute error (MAE), root mean square error (RMSE), and qualitative visual comparison.

Quantitative metrics (Fig.3) show that conventional methods are sensitive to the first-echo PF reconstruction, with high whole-brain errors and POCS giving the lowest whole-brain MAE/RMSE among them. The Echo2/3 analytical estimate as an ablation reference gave lower whole-brain error than conventional pipelines, suggesting that the PF first echo can introduce reconstruction-dependent errors into voxel-wise fitting. Our method achieves the lowest whole-brain and tissue-wise errors. Visual comparison (Fig.4) supports these results. Conventional methods show ringing-like and structured spatial errors, whereas our method substantially reduces these artifacts. A zoomed GM region (Fig.4b) shows that large errors cluster around tissue boundaries and GM-labeled edge voxels, consistent with partial-volume/edge-labeling effects; these errors are considerably reduced by our model. This suggests the model learns a spatially informed correction to the analytical estimate rather than simply reproducing or smoothing the analytical estimate.

The results support the feasibility of our residual DL-based T2 mapping for a three-echo TSE-EPI acquisition with an intrinsic PF first echo. By predicting a correction to the analytical T2 estimate from the later echoes, our framework combines a simple physics-based estimate with data-driven artifact correction. This is relevant because the first echo PF sampling is imposed by diffusion-gradient timing rather than optional undersampling. Limitations include the simulation-based design and image-domain input: BrainWeb data do not capture real scanner effects or in-vivo variability, and performance may depend on the image reconstruction. Future work will validate the framework on physical phantoms and in-vivo data and extend toward joint T2-ADC mapping.

Residual U-Net-based T2 mapping from a single-acquisition three-echo TSE-EPI sequence is feasible in BrainWeb 3T simulations and reduces error compared with conventional PF reconstruction followed by NLLS, supporting further development of direct quantitative mapping for echo-dependent PF acquisitions.
Guanqun LIU (Rotterdam, The Netherlands) , Áron GIMESI , João PERIQUITO , Andreia GASPAR , Juan HERNANDEZ-TAMAMES , Stefan KLEIN , Rita NUNES , Dirk POOT
16:15 - 17:00 Visit posters PG138-PG152.
Sala d’Assaig

"Thursday 01 October"

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E14
15:30 - 17:00

MIS-1
Beyond the Basics: Spinal Cord MRI Advances and Applications

15:30 - 15:48 Preclinical MRI of the Spinal Cord: Multimodal Approaches for Translational Research. Andreea HERTANU (PhD) (Keynote Speaker, Marseille, France)
15:48 - 16:06 Quantitative Spinal Cord MRI in MS. Carmen TUR (Principal Investigator; Miguel Servet & R3 Researcher) (Keynote Speaker, Barcelona, Spain)
16:06 - 16:24 Quantitative MRI of the Spinal Cord: Done, To Do, and the Road to Clinical Translation in SCI. Maryam SEIF (Keynote Speaker, Zurich, Switzerland)
16:24 - 16:42 7T Spinal Cord MRI: Advances, Insights and Unmet Needs. Virginie CALLOT (CNRS Research Director) (Keynote Speaker, Marseille (France), France)
16:24 - 16:42 Methodical Developments for fMRI of the Human Spinal Cord. Jürgen FINSTERBUSCH (Senior Researcher) (Keynote Speaker, Hamburg, Germany)
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I13
15:30 - 16:15

Poster 3
FT3 fMRI

15:30 - 16:15 #53362 - P246 Optimizing 7T fMRI Denoising: Comparing Deep Learning Versus NORDIC.
P246 Optimizing 7T fMRI Denoising: Comparing Deep Learning Versus NORDIC.

High-resolution laminar fMRI at 7T offers an unparalleled window into cortical microcircuitry but is highly susceptible to physiological noise, B0/B1 inhomogeneities, and reduced T2*, compromising statistical power and laminar specificity [1]. Post-acquisition denoising is therefore critical for preserving sensitivity and spatial specificity at the submillimeter scale. This abstract constitutes the second stage of a registered report submitted to ESMRMB 2025, in which a multi-method comparison was proposed. Following preliminary evaluation, the scope was refined to focus on the most clinically promising comparison: our newly developed model, STUNet (SpatioTemporal U-Net), versus NORDIC [2] as a well-validated baseline. Unlike NORDIC, which operates in the complex domain and addresses spatial noise only, STUNet exploits spatial and temporal redundancies using magnitude-only data — reducing storage overhead while targeting improved denoising performance for laminar and clinical fMRI.

Data acquisition. All data were acquired on a 7T SIGNA scanner (GE HealthCare). Twenty scans consist of 5 repeated acquisitions from 4 volunteers, covering all combinations of two resolutions (0.8mm and 1mm isotropic) and two tasks (motor and visual), all with TR = 3 s. Six additional single acquisitions from a fifth volunteer covered motor and brush sensation tasks at both resolutions (TR = 3s). Two further volunteers contributed retinotopy acquisitions at 0.8 mm isotropic and TR = 4s (2 and 6 scans respectively), as well as one partial-coverage slab acquisition at 1.7 mm and TR = 1s. STUNet architecture. STUNet processes 6D magnitude-only inputs (B, 1, X, Y, Z, W) with a sliding temporal window of W = 7. A 3-level 3D U-Net encoder-decoder extracts multi-scale spatial features with in-plane max-pooling preserving the slice dimension. At the bottleneck, a bidirectional convolutional GRU processes features along the slice direction Z, capturing inter-slice context via learned hidden states fused with a 1×1×1 convolution. The decoder uses transposed convolutions with skip connections. A final depthwise 1D temporal convolution mixes information across the W dimension at each spatial position independently. The model is trained on synthetic noisy–clean pairs generated from in-house 7T acquisitions using a combined L1 and total variation loss, the latter weighted by a tuned hyperparameter (tv_lambda = 6e-5) to encourage spatial smoothness while preserving fine structure. NORDIC. NORDIC was applied to the same datasets using the standard implementation, requiring complex-valued data and removing thermal noise via low-rank PCA in patch space [2]. Evaluation. Activation maps were generated with AFNI using identical GLM pipelines across both methods. Metrics include pSNR, tSNR, tSNR maps and cluster t-values. Storage requirements were compared based on magnitude-only versus complex data demands.

tSNR improved by a factor of 1.91 (STUNet) versus 1.63 (NORDIC) relative to unprocessed data, averaged across subjects and regions of interest. pSNR values showed an overall comparable increase for both methods, with a slightly higher outcome for NORDIC (by a factor of 1.05). Activation t-values from motor, visual, and brush sensation tasks were also increased for both methods, with a higher peak value for NORDIC (by a factor of 1.2) but more spatially coherent clusters for the network. STUNet reduced per-session storage by approximately 51.49% by requiring only magnitude data. Representative tSNR maps and activation overlays are shown in Figures 1–2.

STUNet addresses two complementary limitations of NORDIC. First, operating on magnitude-only data eliminates the need to store phase volumes, which at 7T approximately doubles raw data size. Second, the bidirectional convolutional GRU and depthwise temporal convolution target noise structure correlated across both the slice and time dimensions — structure that purely spatial methods cannot fully exploit. The observed improvements in tSNR and activation specificity are consistent with this complementary denoising mechanism. Although STUNet produced slightly lower peak t-values and more spatially dispersed sub-threshold activations than NORDIC, it generated more spatially coherent task-relevant activation clusters with improved anatomical coverage and fewer internal gaps, suggesting enhanced localization despite reduced statistical peak intensity. This is likely related to training data volume and is expected to further improve with a larger dataset.

STUNet demonstrates competitive or superior denoising performance relative to NORDIC for high-resolution 7T fMRI while requiring only magnitude data, reducing storage demands. These properties make it well-suited for research and clinical deployment, including pre-surgical mapping in drug-resistant epilepsy. Future work will validate the approach in patient populations and across a wider range of acquisition protocols.
Thomas Alan LOBOY RAMOS (Munich, Germany) , Marta LANCIONE , Ana Beatriz SOLANA SÁNCHEZ , Laura BIAGI , Brice FERNANDEZ , Luca PERETTI , Florian WIESINGER , Paolo CECCHI , Graziela DONATELLI , Benedikt WIESTLER , Michela TOSETTI , Marion MENZEL
15:30 - 16:15 #54648 - P247 Data-driven estimation of respiration signals from multi-echo fMRI data.
P247 Data-driven estimation of respiration signals from multi-echo fMRI data.

Physiological fluctuations in functional magnetic resonance imaging (fMRI) can confound the interpretation of neuronal-related activity. Although concurrent physiological recordings are commonly acquired for denoising and physiological interpretation [1,2,3], they increase acquisition complexity and are susceptible to missing or misaligned data. As an alternative, data-driven reconstruction of physiological signals directly from fMRI therefore represents an attractive alternative. Previous work demonstrated that respiration waveforms can be retrospectively recovered from motion realignment parameters in simultaneous multislice single-echo fMRI data using a hypersampling strategy that exploits slice acquisition timing [4]. Here, we extend this framework to simultaneous multi-slice multi-echo fMRI data [5] and determine whether echo-dependent information improves respiratory signal recovery in a data-driven manner.

Data acquisition: Multi-echo fMRI data were acquired in ten healthy participants scanned across ten sessions, with four 10-min eyes-open resting-state runs per session, on a Siemens Prisma Fit 3T scanner equipped with a 64-channel head coil (TR = 1.5 s; TEs = 10.6, 28.69, 46.78, 64.87, and 82.96 ms; 52 slices acquired in interleaved order; multiband acceleration factor = 4; field of view = 211 × 211 mm2; voxel size = 2.4 × 2.4 × 3.0 mm3). A T1-weighted MP2RAGE image (1 mm isotropic voxels) was also collected in each session. Concurrent physiological recordings were obtained during all runs using a BIOPAC MP150 system, including respiration belt, pulse plethysmography, and exhaled CO2 via a nasal cannula. Physiological traces were subsequently downsampled to 40Hz to reduce computational cost. In this work, only the respiration belt traces were used and served as reference signal (ground truth) for method development and evaluation. Additional details regarding data acquisition are provided in [6]. Data-driven estimation of respiration signals: Respiratory signals were estimated directly from multi-echo fMRI data by extending the hypersampling framework proposed by Hocke et al. [1] to multi-echo acquisitions (Fig. 1). The approach exploits the temporal offsets introduced by simultaneous multislice (SMS) acquisition to recover physiological fluctuations at temporal resolutions beyond the nominal volume repetition time (TR). For each echo, fMRI volumes were partitioned into groups of slices acquired simultaneously. Given 52 slices acquired with a multiband factor of 4, this resulted in 13 sequential slice groups per TR, yielding an effective sampling frequency of 8.67 Hz (13 / 1.5 s). Each slice group was independently realigned using AFNI 3dvolreg to estimate rigid-body realignment parameters (three translations and three rotations) separately for each echo and slice group. Because the original acquisition was oblique, estimated motion parameters were transformed into scanner physical coordinates to obtain displacements along the superior–inferior (dS), left–right (dR), and anterior–posterior (dA) axes (Fig. 2). Realignment estimates from successively-collected slice groups were then temporally interleaved according to the SMS slice acquisition order to generate hypersampled realignment traces for each echo. The resulting high-temporal-resolution motion parameter matrix served as the initial physiological representation. To suppress periodic artefacts introduced by the interleaving procedure, notch filters were applied at the slice-pack acquisition frequency and its harmonics. Subsequently, the resulting traces were band-pass filtered within the expected respiratory frequency range (0.15–0.5 Hz), producing echo-specific respiratory signal estimates. Performance was evaluated by computing the correlation between each estimated respiratory trace and the simultaneously acquired respiration belt signal, yielding one correlation value per echo.

As shown in Fig. 3, ahe highest agreement between measured and data-driven respiration signals across all subjects and runs was observed for the superior–inferior (dS) and anterior–posterior (dA) motion components, with correlations of 0.89±0.08 and 0.90±0.07, respectively, consistent with previous findings in single-echo fMRI [4]. Obliquity correction improved respiratory signal recovery, particularly for dS, demonstrating the importance of expressing motion estimates in scanner physical coordinates. Across echoes, respiratory traces derived from the first echo (E1) yielded the highest correlations with the respiration belt signal, suggesting that respiration-related motion effects are better captured at shorter echo times [5]. Representative examples are shown in Fig. 4. Although the estimated traces accurately reproduced respiratory timing and frequency, differences in envelope remained, potentially reflecting physiological fluctuations not fully captured by rigid-body motion estimates and motivating further methodological refinement.
Juan ECHEVARRIA-ECHEVERRIA , César CABALLERO-GAUDES (San Sebastian-Donostia, Spain)
15:30 - 16:15 #54279 - P248 Prospective motion correction enhances resting-state fMRI data quality and sample inclusivity in healthy older adults.
P248 Prospective motion correction enhances resting-state fMRI data quality and sample inclusivity in healthy older adults.

Subject motion during fMRI scans degrades data quality, posing a significant challenge. This is especially relevant in movement disorder studies, where subjects with excessive motion are routinely excluded [1], reducing sample representativeness and clinical generalisability. Prospective motion correction (PMC) methods have been found to improve resting-state fMRI data quality [2,3]; however, existing validation studies have focused on healthy young volunteers with instructed motion [2]. Before investigating PMC effectiveness in clinical populations, it is crucial to establish its efficacy in healthy older populations. Older adults tend to move more during scanning compared to younger adults [4], yet remain understudied in PMC validation research. Here, we evaluate the effectiveness of PMC in resting-state fMRI data collected from healthy young and older subjects under typical scanning conditions, without deliberate motion, providing the first direct comparison of fMRI PMC efficacy across age groups.

The PMC system comprises an optical camera set up inside the MRI scanner that tracks in real time the motion of a Moiré phase marker attached to participants via a custom-made 3D-printed mouthpiece (Figure 1). Data were acquired from 20 young (mean age: 24 years, range: 18–31 years, 10F) and 20 older volunteers (mean age: 71 years, range: 60–83 years, 10F), with no neurological/psychiatric history. Resting-state fMRI data were acquired at 3T using a 2D EPI sequence (TR/TE=2000ms/30ms, 32 slices, voxel size=3×3×3.75mm³). Participants were instructed to remain relaxed with eyes open, fixating on a cross for 10 minutes. Data were collected under three conditions: (i) NoMark (no PMC, no mouthpiece), (ii) NoMoCo (no PMC + mouthpiece), and (iii) MoCo (PMC + mouthpiece), in a counterbalanced order across participants. All conditions were repeated across two sessions on different days. Preprocessing was performed using fMRIPrep [5], which included rigid body motion correction. To assess PMC effectiveness, we evaluated: total speed [6] (head movement rate in mm/s), number of outliers (based on framewise displacement (FD [7]) > 0.2 mm), both derived from the realignment parameters, and temporal signal-to-noise ratio (tSNR [8]) averaged across grey matter. For each acquisition condition, we calculated participant exclusion rates using two commonly used head motion thresholds: (i) lenient (mean root mean square displacement (RMSD [9]) > 2 standard deviations above the mean [4]), and (ii) strict (mean FD ≥ 0.2 mm [10]).

Feedback forms (Figure 2) demonstrate excellent mouthpiece tolerability among older participants (comfort level: 1 on a 0–10 scale, where 0 = extremely comfortable), and all older participants were willing to use the mouthpiece again in future scans. PMC significantly reduced head motion metrics in the older group (Figure 3). Specifically, PMC (MoCo) reduced the number of detected motion outliers and improved the tSNR compared with both the NoMark and NoMoCo conditions (p < 0.001). These improvements were not statistically significant in the younger group. Motion outliers differed significantly between age groups across conditions: older adults exhibited more motion outliers than younger adults in both NoMark and NoMoCo conditions (p < 0.001); however, this age difference was eliminated in the MoCo condition, where both groups showed comparable motion outlier rates. No significant differences were observed between the NoMark and NoMoCo conditions, indicating that mouthpiece placement alone did not affect motion metrics. Session-to-session variability was negligible across all conditions. As reported in Figure 4, application of quality control thresholds would have resulted in substantial exclusions of older participants without PMC: six participants (lenient threshold) and fourteen participants (strict threshold) in both the NoMark and NoMoCo conditions. In contrast, PMC reduced exclusions to only one participant (lenient threshold) and three participants (strict threshold).

This study demonstrates that PMC effectiveness varies substantially across age groups. While PMC offered limited to no benefit for younger adults, potentially not justifying implementation costs for healthy young volunteer studies, it provided substantial improvements in data quality metrics for older adults, a population inherently prone to motion artefacts. Critically, PMC eliminated the age-related differences in motion outliers observed without correction, bringing older adults into parity with younger adults.

PMC significantly improves resting-state fMRI data quality in older populations and increases sample representativeness by reducing the need to exclude participants due to excessive motion. By demonstrating PMC efficacy in healthy older adults (a population more representative of clinical cohorts), this work establishes a critical foundation for evaluating PMC implementation in clinical populations prone to motion artefacts.
Beatriz VALE (Lisbon, Portugal) , Patrícia FIGUEIREDO , Marta CORREIA
15:30 - 16:15 #54638 - P249 Measuring gBOLD-CSF coupling with rs-fMRI: effects of methodological choices and association with demographics.
P249 Measuring gBOLD-CSF coupling with rs-fMRI: effects of methodological choices and association with demographics.

The coupling between slow-wave global Blood-Oxygen-Level-Dependent (gBOLD) signal (<1Hz) and cerebrospinal fluid (CSF) flow, measured with resting-state functional Magnetic Ressonance Imaging (rsfMRI), has been interpreted as the relationship between hemodynamic activity and CSF dynamics, important for brain waste clearance. The gBOLD-CSF coupling has thus been proposed as a marker of glymphatic function mostly during sleep [1], but also during weakfulness [2]. Reductions in this index have been reported in neurodegenerative disorders like Parkinson’s Disease [3]. Although this index has proven to be useful to differentiate conditions, the effect of variations in acquisition or analysis parameters on its calculation has not been evaluated. While the initial work [1] used a fast-rate rsfMRI, it is not clear if this index can be reliably measured in sequences of higher TR. In addition, the mask used to estimate gBOLD and CSF signals varies across different studies. We first conducted a pilot study to compare the results obtained using a standard clinical research and a fast-rate rsfMRI sequences, and then we examined if the definition of the gray matter (GM) mask and the CSF-region of interest (CSF-ROI) affected the index value. As an example of applicability, we explored the relationship between gBOLD-CSF coupling and demographic variables in a healthy controls (HC) sample.

A healthy subject 23-year-old female underwent a single MRI session to obtain data for the pilot study. Image protocol included a fast-rate rsfMRI (TR=543ms, TE=39.8ms), a clinical research-like rsfMRI (TR=800ms, TE=37ms), and a T1-weighted (T1w) (TR=2300ms, TE=2.29ms, 1mm isotropic). For the HC study, T1w and rs-fMRI (TR=800ms) were acquired in a sample of 109 HC (Age: 53.23 (15.93), 19-84y, Sex: 65 females and 43 males) recruited as volunteers for several research projects. For the pilot study, rs-fMRI preprocessing included motion and slice-timing correction, detrending and bandpass filtering (0.01-0.1Hz). From T1w images we obtained whole-brain GM (wbGM) and cortical GM (cGM) masks, to compute gBOLD. CSF-ROI was defined as the brightest voxels around brainstem of rsfMRI reference last 3 slices (Figure 1). In addition, 3 control CSF-ROIs (6mm) were defined in MNI coordinates including adjacent tissue to the CSF-ROI (15, -30, 55), 4th ventricle (1, -26, -17) and right lateral ventricle (21, -21, 22). We then obtained the BOLD timeseries from all masks and computed the cross-correlation between gBOLD and CSF timeseries with a time lag from -10s to 10s. We studied stability and specificity of the index, measured as the peak of anticorrelation between signals. Finally, we applied the abovementioned processing to all 109 HC and computed the gBOLD-CSF coupling as the maximum anticorrelation of the cross-correlation curve per subject between wbGM and CSF-ROI BOLD signals.

In the pilot study, gBOLD-CSF coupling was computed using wbGM and CSF-ROI masks for both sequences. Aligned with previous studies, we observed a lag-dependent anticorrelation between signals. The fast-rate rsfMRI had higher temporal resolution, but the anticorrelation profiles were similar between sequences, with a peak at lag=2.7s (r=-0.638) for the fast-rate scan and lag=3.2s (r=-0.505) for the standard (Figure 2). Regarding the GM mask, when comparing wbGM and cGM, we saw that while the anticorrelation peak lag was the same (2.7s), the coupling strength was slightly higher for wbGM (r=-0.638 vs r=-0.595, Figure 3A). For the control ROIs, we found asymmetric anticorrelation patterns, not comparable with the gBOLD-CSF coupling definition (Figure 3B), reinforcing the specificity of our CSF-ROI. In HC sample, the index showed a great variability across subjects. It slightly correlated with age and did not differ between sexes (Figure 4).

The pilot study findings show that gBOLD-CSF coupling can be estimated with a clinical research sequence, although the coupling strength and lag varies between TRs. This suggests that direct comparisons of the index between studies of different TR should be interpreted carefully. Regarding control ROIs analysis, the distinct cross-correlation profiles suggest the specificity of the measured coupling in CSF-ROI mask. Finally, differences between cGM and wbGM may be attributed to physiological characteristics of the signal [4] or to the spatial extent of the masks. Results in HC sample align with previous findings [5]. We did not find the same reported sex effect, which may be because of our limited sample size.

This pilot study shows that gBOLD-CSF coupling can be estimated under a clinical research sequence with results comparable to fast-rate rsfMRI. The index is specific to the CSF-ROI and reproducible across different GM mask definitions. However, it is important to note that for direct comparisons, similar acquisition parameters are needed. Group results indicate that this index might be used as a marker in disease populations.
Cristina MARTÍN-BARCELÓ (Barcelona, Spain) , Roser SALA-LLONCH , Carles FALCON , Ignacio ROURA , Jèssica PARDO , Carla GARCÍA-VICENTE , Laura PACHECO-JAIME , Núria BARGALLÓ , Carme JUNQUÉ , Bàrbara SEGURA
15:30 - 16:15 #54709 - P250 Short-term reproducibility of ROI-based fALFF and ReHo metrics in a longitudinal resting-state fMRI dataset.
P250 Short-term reproducibility of ROI-based fALFF and ReHo metrics in a longitudinal resting-state fMRI dataset.

Resting-state fMRI metrics such as fractional amplitude of low-frequency fluctuations (fALFF) and regional homogeneity (ReHo) can be used to characterize local spontaneous brain activity and short-range functional synchronization[1]. However, their reproducibility remains a key issue for interpreting longitudinal or intervention-based studies[2]. Here, we assessed the short-term stability of ROI-based fALFF and ReHo metrics in a pre/post resting-state fMRI dataset acquired in healthy older adults.

Thirty-one healthy participants underwent MRI before and after a 4-week wellness-oriented residential protocol. Resting-state fMRI was acquired on a 3T Siemens Biograph mMR using a multiband EPI BOLD sequence: TR/TE = 700/30 ms, voxel size = 3.5 × 3.5 × 3.0 mm³, 40 slices, MB = 4, GRAPPA = 2, volumes = 300. fALFF and ReHo maps were computed from preprocessed BOLD time series and regional mean values were extracted using anatomical atlas-based ROIs. Complete pre/post pairs were available for all participants. Reproducibility was assessed across 148 ROIs from the AAL atlas using: (i) within-subject spatial correlations between pre- and post-intervention ROI profiles; (ii) ROI-wise intraclass correlation coefficients for absolute agreement (ICC); and (iii) median absolute percentage change. Paired pre/post comparisons were additionally tested with FDR correction to identify systematic longitudinal shifts. In addition, reproducibility was summarized in selected ROIs chosen to sample different anatomical and signal conditions, including cortical regions, midline structures, and white-matter/interhemispheric ROIs with lower expected BOLD contrast.

Overall, fALFF showed higher short-term stability than ReHo, as reflected by the ROI-wise ICC distributions (Figure 1). The median within-subject pre/post spatial correlation for fALFF values across ROIs was 0.989 (IQR: 0.980–0.993), and the median ROI-wise ICC was 0.865 (IQR: 0.705–0.915). Overall, 103/148 ROIs showed excellent reproducibility (ICC > 0.75), while 129/148 showed at least moderate reproducibility (ICC > 0.50). The median absolute percentage change was 6.5%. ReHo showed preserved spatial stability but lower ROI-wise reproducibility, with a median within-subject spatial correlation of 0.940 (IQR: 0.926–0.960) and a median ICC of 0.620 (IQR: 0.449–0.761). For ReHo, 41/148 ROIs showed excellent reproducibility and 96/148 showed at least moderate reproducibility. The median absolute percentage change was 16.7%. No ROI showed significant pre/post changes after FDR correction for either fALFF or ReHo. In the a priori ROI analysis, fALFF showed high reproducibility in bilateral insula, orbitofrontal, cingulate and callosal ROIs, whereas ReHo reproducibility was more heterogeneous across cortical regions and relatively higher in selected callosal ROIs (Figure 2).

The reproducibility profile differed between the two resting-state fMRI metrics. fALFF showed consistently higher ROI-wise ICCs and smaller pre/post percentage changes, suggesting that regional low-frequency fluctuation amplitude may provide a more stable ROI-level marker in short-term longitudinal designs. By contrast, ReHo preserved subject-specific spatial patterns but showed lower and more heterogeneous ICCs, indicating greater sensitivity to regional variability or preprocessing- and anatomy-related factors. This difference was also evident in selected ROIs based on their different anatomical and signal conditions: fALFF showed more homogeneous reproducibility across cortical and interhemispheric regions, whereas ReHo displayed a more region-dependent pattern (Figure 2). Importantly, no ROI showed significant systematic pre/post changes, supporting the interpretation that the observed variability may reflect metric-specific reproducibility rather than consistent intervention-related effects.

In this short-term longitudinal resting-state fMRI dataset, ROI-based fALFF showed stronger reproducibility than ReHo, with higher ICCs across atlas-based regions and relevant ROIs (Figures 1–2). These findings support the inclusion of reproducibility metrics, particularly ICC and pre/post spatial stability, when interpreting longitudinal resting-state fMRI changes in exploratory intervention studies. ReHo may still provide complementary information, but its greater regional variability should be considered when designing and interpreting pre/post analyses.
Angelina CATRAMBONE (Catanzaro, Italy, Italy) , Valerio Riccardo AQUILA , Maria Celeste BONACCI , Maria Eugenia CALIGIURI
15:30 - 16:15 #54711 - P251 Caffeine’s state-dependent effects on cortical dynamics: A surface-based fMRI study.
P251 Caffeine’s state-dependent effects on cortical dynamics: A surface-based fMRI study.

Caffeine is a potent CNS stimulant that concurrently induces cerebral vasoconstriction. [1] This physiological dualism complicates BOLD-fMRI interpretation, as the BOLD signal relies on neurovascular coupling, and caffeine has the ability to reset the coupling between blood flow and metabolism. [2] While early literature proposed caffeine as a "contrast booster", it remains unclear whether this effect is uniform across cognitive networks or if it interacts with task demand. [3] Most pharmacological fMRI studies examine task-evoked or resting-state responses in isolation, leaving open whether caffeine reorganizes cortical dynamics differently across brain states. We hypothesize that caffeine's cortical effects are state-contingent, driving a distinct dissociation between global resting-state hemodynamics and variable task-evoked responses.

Fourteen healthy participants (N=14) underwent a within-subject, fMRI study following a 200 mg oral caffeine dose (Figure 1). Images were acquired on a 3T Siemens scanner (20-channel coil, GE-EPI, 2.5mm isotropic, TR=3s, TE=36ms) with concurrent cardiac (PPG) and respiratory (belt) recordings. Each session included continuous resting-state fMRI and a block-design mental arithmetic task. Functional MRI data were preprocessed using AFNI [4], and RETROICOR [5] regressors were included to account for periodic physiological fluctuations associated with cardiac and respiratory cycles. Functional data were projected onto the MNI152_2009 cortical surface via SUMA to improve spatial specificity. [6] We calculated fractional Amplitude of Low-Frequency Fluctuations (fALFF) for resting-state and performed 3dREMLfit for the “Math > Baseline” contrast. To isolate the caffeine effect and control for inter-subject variance, subject-level difference maps (caffeinated minus no-caffeine) were generated for both fALFF and task-evoked BOLD responses. ROI-based paired t-tests and Cohen’s dz were calculated across Visual, Attention, Salience, and DMN networks.

Resting-state difference maps (Figure 2) revealed a consistent, global negative shift in baseline amplitude due to caffeine. All evaluated networks exhibited fALFF suppression, with the primary visual cortex (V1) driving the most significant reduction (p=0.034, dz=-0.631). Spatial cluster analysis identified a 720-voxel suppression cluster localized to the bilateral occipital lobe. Other regions also showed varying degrees of resting-state suppression (V2: p=0.075, dz=-0.518; V3: p=0.053, dz=-0.570; Visual ROI: p=0.044, dz=-0.596; PCC: p=0.054, dz=-0.567). Conversely, task-evoked BOLD responses (Figure 3) exhibited high inter-subject variance with bidirectional shifts. ROI analysis yielded non-significant group-level effects across all major networks (e.g., IPS: p=0.431, dz=0.348; ACC: p=0.195, dz=-0.477), demonstrating that task-evoked BOLD signals remain resilient despite caffeine-induced baseline suppression.

The data distinctly visualize the neurovascular paradox: caffeine’s vasoconstrictive effect drives a robust negative shift in baseline hemodynamic oscillations, yet the task-evoked difference map remains highly variable and resilient at the group level. However, this interpretation should be considered with caution. The application of RETROICOR may have influenced the observed effects by reducing cardiac- and respiratory phase-related physiological fluctuations. The high inter-subject variability in the task-evoked response may therefore reflect individual compensatory cognitive strategies, differences in physiological noise correction, and potential fatigue or habituation effects inherent to the sequential, non-counterbalanced design. Finally, ROI-level findings should be interpreted cautiously in the absence of multiple comparison correction.

By analyzing the pre-to-post caffeine subtraction, this approach isolates the pharmacological contribution from individual baseline differences, revealing a dissociation between resting-state suppression and resilient task-evoked responses. These findings highlight the critical need to account for vascular states when interpreting functional data. Future analyses will systematically examine how RETROICOR-based and additional cardiorespiratory regressors affect the observed caffeine-related changes.
Fatma Zehra UÇAL (Istanbul, Turkey) , Cem KARAKUZU , Kübra EREN , Alp DINÇER , Pinar S ÖZBAY
15:30 - 16:15 #54661 - P252 Coupling of fMRI resting-state networks with autonomic-driven arousal fluctuations.
P252 Coupling of fMRI resting-state networks with autonomic-driven arousal fluctuations.

Resting-state fMRI enables the investigating of large-scale brain organization with high spatial resolution and whole-brain coverage, through resting-state networks (RSNs) characterized by coherent BOLD fluctuations [1],[2]. Spontaneous BOLD fluctuations are influenced not only by neural activity, but also by autonomic arousal processes, measurable through heart rate (HR), heart rate variability (HRV), and eye blinks (EB) [3],[4]. Although often treated as confounds, these fluctuations may reflect coordinated brain-body dynamics during rest [3],[4]. However, the temporal coupling between resting-state fMRI and simultaneous EEG fluctuations remains poorly understood [5], as previous studies have mainly focused on global fMRI signals or voxel-wise analyses rather than canonical RSNs [3]. Here, RSNs were used to investigate the temporal coupling between intrinsic BOLD activity and autonomic physiological fluctuations during rest.

Simultaneous resting-state EEG-fMRI data were acquired from 30 healthy participants across two in-house datasets using a 3T Siemens Vida MRI scanner. Resting-state fMRI data were acquired using gradient-echo EPI (TR/TE = 1260/33 ms, 2 mm isotropic resolution), while simultaneous EEG/ECG signals were recorded using a 32-channel MR-compatible EEG system (Brain Products) at 5 kHz sampling rate. After standard preprocessing and denoising using FSL and MATLAB tools, group spatial independent component analysis (ICA) identified six canonical RSNs based on template similarity [2] :default mode (DMN), dorsal attention (DAN), ventral attention (VAN), visual (VN), frontoparietal (FPN), and somatomotor (SMN) networks (Figure 1). RSN BOLD time series in each subject were obtained by linear regression, together with mean cortical and subcortical gray matter (GM) signals. After MR artifact, HR, HRV (SDNN and EB time series were extracted from ECG and EEG recordings [6]. Prior to subsequent analysis, BOLD signals and HR time series were band-pass filtered (0.01-0.2 Hz). Pearson cross-correlations were computed for each subject between physiological signals (HR, HRV, EB) and BOLD fluctuations (6 RSNs, cortical and subcortical GM), across temporal lags up to ±30 s (HR/HRV) and ±12.6 s (EB). Each individual cross-correlation curve was normalized by its maximum absolute correlation value to eliminate inter-subject amplitude variability and emphasize the temporal coupling profile. Group-average profiles and across-subject variability (SD) were estimated.

Distinct temporal coupling patterns were observed between physiological fluctuations and resting-state fMRI networks (Figure 2). HR-related fluctuations showed rapid lag-dependent oscillatory profiles across several RSNs, with stronger coupling in VN, cortical GM, and subcortical GM, while DAN exhibited delayed anticorrelation pattern. Compared to HR, HRV-related fluctuations showed slower and broader temporal dynamics with delayed negative correlations in cortical GM, subcortical GM, DMN, and SMN signals, whereas VN and VAN displayed weaker and more temporally localized coupling. EB-related fluctuations exhibited distinct network-specific profiles, with positive correlations in VN and VAN activity at positive lags, and delayed negative in DMN and DAN. Overall EB-BOLD interactions differed substantially across RSNs and global GM signals.

These findings suggest that autonomic arousal-related physiological fluctuations are coupled with resting-state BOLD activity in a network-specific manner. Distinct coupling profiles across HR, HRV, and EB, indicate that different physiological processes contribute differently to spontaneous BOLD dynamics during rest. Using an RSN framework enabled a more spatially specific characterization of physiological-BOLD interactions compared to global signal approaches. Our results are consistent with , and extend, previous studies showing that autonomic fluctuations contribute to resting-state BOLD variability and coordinated brain-body dynamics during spontaneous arousal fluctuations [3,4]. In particular, the strong lag-dependent coupling observed within visual and cortical GM signals agrees with recent reports of structured heart-related BOLD interactions across RSNs [7]. Distinct EB-related temporal profiles further support the association between spontaneous eye blinks and transient arousal-related neural processes [8].

This work demonstrates structured temporal coupling between resting-state fMRI networks and autonomic/arousal-related physiological signals, including HR, HRV, and EB. Different RSNs exhibited distinct lag-dependent coupling profiles, suggesting heterogeneous interactions between physiological fluctuations and intrinsic brain dynamics. These findings support the idea that physiological fluctuations reflect meaningful components of spontaneous brain-state regulation during rest rather than nonspecific physiological noise.
Eleonora FAUSTINI , Marta XAVIER , Neil MEHTA , Andrea FARABBI , Patricia FIGUEIREDO (Lisboa, Portugal)
15:30 - 16:15 #54570 - P253 An exploration of normative modeling for resting-state functional MRI (rsfMRI) metrics: ALFF, fALFF, and ReHo.
P253 An exploration of normative modeling for resting-state functional MRI (rsfMRI) metrics: ALFF, fALFF, and ReHo.

The clinical use of a novel imaging method as a relevant biomarker relies on developing standard reference values. Resting-state functional MRI (rsfMRI) is a popular, non-invasive neuroimaging technique used for biomarker discovery. It indirectly measures spontaneous neuronal activity in the absence of any explicit task [1,2], using the blood-oxygen-level-dependent (BOLD) signal [3,4]. rsfMRI studies typically adopt the case-control paradigm, which contrasts group averages under assumptions of within-group homogeneity and between-group heterogeneity that are often invalid and, to date, has produced limited biomarkers with high specificity [5,6]. Normative modeling offers a complementary approach by mapping typical variation across a reference cohort, enabling quantification of individual deviations from this baseline [7,8]. However, normative modeling of rsfMRI remains poorly characterized in healthy populations [9]. We believe establishing these baselines is a necessary step before extending this approach to clinical cohorts. The goal of our work was to develop a spatial normative model of rsfMRI that captures several features of the BOLD signal, taking into consideration age and sex, in a young population.

Three publicly available neuroimaging datasets (ABIDE-I [10], ABIDE-II [11], and INDI [12]) were aggregated to form a multi-site sample of 1,026 typically developing participants aged 10-30 years. Data were preprocessed following the standard pipeline described in Amador-Tejada et al. (2025), including motion correction, slice-timing correction, susceptibility-distortion correction, spatial smoothing, 4D global normalization, brain extraction, and registration to MNI152 space [13]. Three rsfMRI voxel-wise metrics were computed: amplitude of low-frequency fluctuations (ALFF), fractional ALFF (fALFF), and regional homogeneity (ReHo) [13,14] and summarized across 8 brain regions of interest (ROI) from the MNI structural atlas [15-17]. No within-subject rescaling was applied to the rsfMRI parametric maps, preserving inter-individual variability in the raw metric values. For each metric, a hierarchical Bayesian regression with a non-Gaussian (SHASHb) likelihood was fitted for each ROI using the Predictive Clinical Neuroscience Toolkit (PCNToolkit) (v1.1.2) [18,19], modeling non-linear age effects with cubic B-splines (3 degrees, 3 knots), sex as a covariate, and acquisition site as a random batch effect [20,21]. The sample was partitioned 80/20 into training and testing subsets, and model performance was assessed with explained variance (EXPV), standardized mean-squared error (SMSE), Shapiro-Wilk test (ShapiroW) and mean standardized log-loss (MSLL).

Spatial normative models were built for three rsfMRI metrics: ALFF and fALFF, both reflecting the frequency-based intensity of the BOLD signal, and ReHo, depicting local connectivity. Fig. 1 shows the distribution of participants across (a) age and (b) databases and sites, while the evaluation statistics on the held-out data is summarized in Fig. 2. These models estimated the average value of these metrics for each brain region as a function of age and sex, while accounting for MRI scan-related effects as seen in Fig. 3 and 4.

Models were appropriately calibrated across metrics as shown in Fig. 2. Overall, fALFF showed the strongest performance, with the highest EXPV, and lowest SMSE and MSLL, followed by ALFF and ReHo. Overall, evaluation statistics stayed within the ranges previously reported for normative models of regional brain features [18,20]. Normative trajectories differed across brain regions as a function of age and sex, as seen in Fig. 3 and Fig. 4. This is consistent with prior work [1,2], that demonstrated regional variation of the resting-state BOLD signal which indirectly reflects functional brain topography via neurovascular coupling [4,22]. Sex effects were small in magnitude and spatially diffuse as seen in Fig. 3 and Fig. 4.

This work established a regional normative reference for three rsfMRI metrics in a young population from 10-30 years, providing a basis for personalized analyses complementing the group-level case-control approach. Future work should extend the parcellation to a denser set of regions to improve spatial resolution and incorporate additional rsfMRI metrics. Because each metric quantifies a distinct property of the BOLD signal, modeling together could provide a more comprehensive characterization of brain function. Larger samples with wider age ranges and balanced sex ratios will also be essential to strengthen generalizability.
A. AMADOR-TEJADA (Canada, Canada) , E. DANIELLI , M.d. NOSEWORTHY
15:30 - 16:15 #54317 - P254 Distance-dependent spectral mapping of physiological BOLD fluctuations relative to neurofluid anatomy at 7 T using sub-300 ms SMS-EPI.
P254 Distance-dependent spectral mapping of physiological BOLD fluctuations relative to neurofluid anatomy at 7 T using sub-300 ms SMS-EPI.

Ultrafast functional MRI (TR <300 ms) enables alias-free separation of physiological BOLD fluctuations, including cardiac and respiratory components that are inaccessible with conventional TRs [1,2]. These frequency-specific BOLD signal fluctuations are expected to be driven by neurofluid dynamics and may therefore vary with distance to arteries, veins, and perivascular spaces. We pursue three objectives: (i) to demonstrate the feasibility of such EPI-based ultrafast fMRI across two 7T systems, (ii) to explore whether frequency band-limited BOLD amplitude is spatially organized relative to neurofluid compartments (arteries, veins, and perivascular spaces), and (iii) to implement this analysis in a reusable open-source workflow.

We developed a BIDS-compatible pipeline that segments arteries, veins, and perivascular spaces (PVS) from TOF angiography, T2*w scans, and heavily T2w MRI, computes voxelwise fMRI band- amplitude maps and relates them to Euclidean distance from the nearest neurofluid structure. Spectral amplitudes were summed within the cardiac (0.80–1.20 Hz), respiratory (0.20–0.30 Hz), LF (0.027–0.073 Hz), and VLF (0.010–0.027 Hz) bands using voxelwise FFT of the detrended data, and analyzed with both distance-binned and continuous regression models. Ultrafast fMRI was acquired using standard 2D SMS-EPI on two 7 T systems: Siemens Terra.X Impulse Edition (7Tx) (64 × 64, 3 mm, 48 slices, MB8, TR/TE = 200/12 ms, bandwidth 7812 Hz/pixel) and 7T Plus (7T+) (64 × 64, 3 mm, 40 slices, MB8, TR/TE = 250/17 ms, bandwidth 2894 Hz/pixel), providing whole-brain coverage online via the scanner’s reconstruction. Per scanner, a single healthy volunteer was scanned (written consent, approved by local IRB). Additional ToF and T2*w images were acquired for neurovascular segmentation, while heavily T2w imaging for PVS segmentation was available on 7Tx only.

Neurofluid segmentations for both scans alongside are shown in Fig. 1. A representative slice of the amplitude maps from the 7T+ scan is shown in Fig. 2. Frequency band-limited BOLD signal amplitude was higher near vessels than in distant tissue. For the 7Tx, arterial amplitude was ~2× higher in the 0–2 mm versus >10 mm distance bins for cardiac (0.079 vs 0.039) and respiratory (0.088 vs 0.041) bands, with similar trends in LF/VLF. Spectral peaks were preserved while amplitudes decreased with distance (Fig. 3). The 7T+ dataset showed similar distance– amplitude relationships, including reduced amplitude in distant tissue and preserved peak frequencies, with a non-monotonic pattern, with highest amplitude at 2–5 mm, followed by 0–2 mm, and lowest beyond 5 mm, and strongest gradients in LF/VLF (Fig. 4).

Ultrafast BOLD spectral amplitude showed comparable distance-dependent amplitude modulation across 7T systems, consistent with prior work showing spatially structured physiological effects and vessel-distance dependence in cardiac and low-frequency fMRI signals [1,3,4], although more data are needed to verify generalization. Peak frequencies remained stable, indicating an expected decreasing amplitude rather than peak shifts when the distance to neurofluid compartments increases. Future extensions should also include ventricles and other CSF-filled structures as well as perform a rigorous statistical assessment in a larger cohort with test-retest scans.

Proximity-based spectral mapping of ultrafast BOLD is feasible in healthy volunteers using SMS-EPI and vendor online reconstruction at 7T. We provide an open framework for neurofluid compartment-aware frequency analysis of physiological BOLD signals.
Yasin Tashraf HUSSAIN , Oliver SPECK , Hendrik MATTERN (Magdeburg, Germany)
15:30 - 16:15 #54650 - P255 Semantic Inner Speech Decoding Using Functional Connectivity and Machine Learning.
P255 Semantic Inner Speech Decoding Using Functional Connectivity and Machine Learning.

Speech is a fundamental component of human communication, yet neurological disorders and trauma may lead to temporary or permanent speech impairments [1]. Inner speech (IS) refers to internalized speech without overt vocalization [2], and decoding such IS using measures of corresponding brain activity could help communication in cases of speech impairments. Previous studies have shown that IS modulates distributed functional connectivity (FC) networks [2]. However, FC-based IS decoding studies remain limited and have primarily focused on electroencephalography (EEG)-derived connectivity measures [3],[4]. As opposed to EEG, functional magnetic resonance imaging (fMRI) provides high spatial resolution for investigating the spatial organization of IS-related brain activity [5]. Therefore, the present study investigated the feasibility of decoding semantic IS representations using fMRI-derived FC patterns.

The publicly available dataset comprised of four healthy participants from the OpenNeuro platform [6], each completing two fMRI sessions. During each trial, participants silently repeated visually presented words from either social (child, daughter, father, wife) or numeric (three, four, six, ten) semantic categories for 4 s, followed by a 10-s rest period, resulting in 320 trials per participant. MRI data were acquired using T1-weighted (structural) and multiband EPI (functional) sequences on a Siemens Prisma scanner. Additional acquisition details are available in [7]. Figure 1 illustrates the preprocessing and analysis pipeline. Functional and structural MRI data were preprocessed using the standard fMRIPrep pipeline [8]. Mean region of interest (ROI) time series were extracted using the Harvard-Oxford and AAL atlases [9] after detrending and nuisance regression (motion, motion derivatives, white matter, and CSF). Task-related fMRI volumes were selected with hemodynamic delay adjustment, and ROI-to-ROI FC was computed using Pearson correlation followed by Fisher z-transformation. Sparse connectivity graphs were generated by retaining the strongest 30% of FCs. Node features included mean ROI activity, signal variability, and weighted connectivity degree derived from FC matrices. Graphs were implemented in PyTorch Geometric [10] and classified using an edge-conditioned graph neural network (GNN) consisting of two NNConv layers, ReLU activation, dropout, global mean pooling, and a final linear classifier. The model was trained using Adam optimization with cross-entropy loss. ROI and connectivity occlusion analyses were additionally performed to interpret GNN predictions. For classical machine learning (ML), graph-derived features were classified using logistic regression, linear and RBF SVM, and XGBoost. The classification performance was evaluated using leave-one-subject-out (LOSO) and subject-wise validations (5-fold). Performance metrics included balanced accuracy, F1 score, and area under the receiver operating characteristic curve (AUC).

Semantic IS decoding performances (social vs numeric IS; chance level = 0.5) are summarized in Table 1 and illustrated in Figure 2. GNN achieved the strongest subject-wise performance (balanced accuracy: 0.73 ± 0.07), while LOSO performance was lower but remained above chance (balanced accuracy: 0.59 ± 0.10). Among classical ML approaches, XGBoost showed the best LOSO performance (balanced accuracy: 0.55 ± 0.03), whereas logistic regression yielded lower subject-wise performance (balanced accuracy: 0.51 ± 0.05). Overall, GNN-based decoding outperformed ML classifiers, particularly in subject-wise decoding, suggesting improved modeling of subject-specific FC patterns. Connectivity occlusion analysis further revealed that the GNN relied on a sparse network of distributed temporal, parietal, subcortical, and cerebellar interactions (Figure 3).

The present study investigated the feasibility of decoding semantic IS using fMRI-derived FC and graph-based learning. The GNN achieved the strongest performance, particularly in subject-wise decoding, while lower LOSO performance suggested substantial inter-subject variability. The most decision-relevant interactions involved temporal, auditory, occipital, parietal, and subcortical regions associated with language and visual-semantic processing. In particular, FC between the posterior temporal fusiform cortex and Heschl’s gyrus may reflect integration of visual-semantic and auditory-language representations, consistent with previous studies [11]. Overall, the findings suggest that semantic IS decoding relies on distributed functional networks rather than isolated regional activity. Limitations include the small sample size and limited semantic categories.

This study demonstrates the feasibility of decoding semantic IS using fMRI-derived FC graphs and GNNs. GNN-based decoding outperformed classical ML approaches, suggesting that graph-based models effectively capture individualized FC organization during IS.
Esra SÜMER-ARPAK (Luleå, Sweden) , Arda ARPAK , Debashis DAS CHAKLADAR , Rajkumar SAINI , Johan ERIKSSON , Foteini SIMISTIRA LIWICKI
15:30 - 16:15 #54713 - P256 fMRI-Based Decoding of Overlapping Hand Gestures in a Rock-Paper-Scissors Paradigm.
P256 fMRI-Based Decoding of Overlapping Hand Gestures in a Rock-Paper-Scissors Paradigm.

Movement decoding from neuroimaging signals is central to brain-computer interfaces (BCIs) and neurorehabilitation. While EEG and fNIRS offer portability, they are limited by susceptibility to motion artefacts and low spatial resolution, respectively. Functional MRI, despite its hemodynamic delay, provides whole-brain coverage at millimetre-scale resolution, making it a powerful tool for mapping distributed motor representations. Prior work has demonstrated that isolated, well-separated movements can be reliably decoded from fMRI activation patterns [1], but naturalistic tasks involving kinematically overlapping movements remain largely unexplored. Here, we tested whether single post-execution fMRI volumes can discriminate three hand gestures from a rock-paper-scissors paradigm — all of which share an identical initial forearm up-and-down movement. To our knowledge, this is the first fMRI study to decode rock-paper-scissors gestures.

Six participants performed a rock-paper-scissors task during fMRI acquisition (12 runs × 25 rounds each). Each movement was cued by a yellow cross and after a 6.4 s delay (4 volumes), the outcome was revealed. Movements were executed as in real-life play, with all three gesture classes initiated by a shared forearm up-and-down movement. To account for hemodynamic lag, the first three post-movement volumes were discarded and the following four volumes (4.8–9.6 s) were labelled according to gesture class. A leave-two-runs-out cross-validation was applied throughout. Two classifiers were evaluated: a linear Support Vector Machine (SVM) and a Graph Convolutional Neural Network with Chebyshev convolution (ChebNet)[2]. Brain activity was parcellated using the Schaefer 1000-parcel atlas[3], and the ChebNet was applied to the resulting parcel-level connectivity graph[2]. To benchmark pipeline performance against an established motor decoding standard, the same approach was applied to six CNeuroMod participants who had performed the Human Connectome Project (HCP) motor task (left/right hand, left/right foot, tongue; 15 runs)[1]. Statistical significance was assessed by permutation testing (1,000 permutations per model and task).

On the HCP motor task, SVM accuracy ranged from 0.85 to 0.94 (mean ± SD: 0.90 ± 0.03), consistent with prior benchmarks for well-separated effector movements[1]. On the rock-paper-scissors task, accuracy was substantially lower: 0.49 to 0.61 (mean ± SD: 0.56 ± 0.07), against a chance level of 0.33 for three classes. Both classifiers exceeded chance (p < 0.01) across all tasks, and the accuracy drop from HCP motor to rock-paper-scissors was significant (p < 0.001). The SVM marginally outperformed ChebNet in all conditions. Temporally, volumes at 4.8–6.4 s post-movement onset were most discriminative; restricting classification to later volumes reduced accuracy by approximately 15%.

Within-subject fMRI decoding of naturalistic, kinematically overlapping gestures is feasible, but accuracy is substantially reduced relative to isolated movements. This gap likely reflects two compounding factors: the shared forearm motion constrains the discriminative signal in primary motor cortex[4], and the distal finger configurations differentiating rock, paper, and scissors produce subtler, more spatially distributed BOLD differences than the grossly distinct effector activations in the HCP motor task. The HCP benchmark performance aligns with prior decoding studies using the same CNeuroMod dataset[1], confirming pipeline validity. The modest but statistically reliable above-chance accuracy for rock-paper-scissors — achieved from single volumes in a within-subject design — establishes a proof-of-concept for fMRI-based decoding of overlapping motor patterns, though the small sample (N = 6) limits generalisability.

These findings show that fMRI can decode partially overlapping, naturalistic hand gestures within individuals, with accuracy constrained by shared kinematics and hemodynamic sluggishness. Future work should explore novel modelling approaches such as fMRI foundation models[5] to better capture subtle distributed representations, and larger samples to establish reliability. Validating equivalent decoding in portable neuroimaging systems such as fNIRS would be an essential step toward real-world BCI and neurorehabilitation applications.
Chris AWAI , Gerasimos PEFANIS , Charlotte KOHLER , Josua ZIMMERMANN (Vitznau, Switzerland)
15:30 - 16:15 #54198 - P257 Enhanced Mapping of Striatal Activity During Motor Sequence Learning with Fast-TR EPI at 7T.
P257 Enhanced Mapping of Striatal Activity During Motor Sequence Learning with Fast-TR EPI at 7T.

The striatum, the main input nucleus of the basal ganglia, plays a central role in motor sequence learning. fMRI studies have shown learning-related changes in activity across striatal subregions [1], [2], [3]. Individual precision mapping aims to achieve high temporal signal-to-noise ratio (tSNR) and dense sampling in single subjects, revealing subject-specific neural features that may be obscured in large-group analyses [4]. This approach is particularly relevant for motor learning, where learning trajectories vary across individuals. However, striatal fMRI is challenged by intrinsically low tSNR [5]. Here, we used a fast-TR (300 ms) EPI protocol at 7T to characterize striatal activity during motor sequence learning in individual subjects and explored the advantages of combining fast-TR EPI with NORDIC denoising [9] over multi-echo EPI (ME-EPI).

Subjects: 28 subjects were scanned with fast-TR EPI (19 Males, 30.2 ± 6.1 years old) and ten subjects were scanned using ME-EPI (7 Males, 31.1 ± 5.67 years old). Behavioral task & measures: Participants performed three consecutive repetitions (“runs”) of a block-design finger-tapping task, consisting of blocks with either a simple (1-2-3-4-1-2-3-4) or a complex (1-3-2-4-3-1-4-2) sequence. Sequences were presented visually at a frequency of 1.5 Hz, and subjects were asked to press the buttons of a press-box. Each task had 14 blocks of 16 seconds (simple and complex interleaved), followed by 14 seconds of a fixation point. Behavioral data was analyzed per block for the mean reaction-time (mRT) and number of errors (defined as not making a correct press at a designated time window of 1.5 sec). In addition, Linear Integrated Speed-Accuracy Score (LISAS) was computed [12]. Scan parameters: fMRI scans were acquired using a 7 T MR scanner (Terra, Siemens, Erlangen, Germany), a 1Tx/32Rx head coil and ME-EPI pulse sequence from CMRR (Center for Magnetic Resonance Research, Minnesota, USA) [6], [7]. ME-EPI scan parameters were: 45 slices, resolution 2.14 X 2.14 X 2.2 mm3, TR=1 sec, TEs= 8.74, 22.07 & 35.4 ms, flip angle=45° and slice and in-plane accelerations were x3, x3, respectively. Fast-TR EPI scan parameters were: 36 slices, resolution of 2.05 X 2. 05 X 2.2 mm3, TR=0.3 sec, TE =12 ms, flip angle=35° and the same acceleration as above. Pre-processing: Data was first realigned (using Spm12 in MATLAB 2024). In the ME-EPI dataset, realignment was done using the first echo data and echoes were combined according to their TE-weighting [8]. NORDIC denoising was applied using both the magnitude and phase images using the NIFTI_NORDIC function in MATLAB [9]. To delineate the striatum subregions, the affine inverse transformation to MNI152 space was computed, and an atlas comprising of striatal functional networks was transformed and co-registered to native space [10]. Analysis: Individual statistical parametric maps were computed for each dataset, followed by computing voxel wise percent signal change (PSC [%]; according to [11]). The mean PSC was computed for voxels with t-test>2 for the right and left striatum for each subject, task and functional network.

Combining fast-TR EPI with NORDIC denoising increased tSNR by ×2.2 compared to ME-EPI. NORDIC denoising was also more effective for fast-TR EPI, increasing tSNR by ×1.8 relative to no denoising, compared to a ×1.4 increase for ME-EPI (Fig. 1a). Denoising had resulted in a significant increase in the number of significant voxels (x2.3 across the subregions; Fig. 1B). Behavioral measures showed a wide range of reaction times and error counts across subjects, together with learning effects across repeated runs (Fig 2A). A positive correlation between striatal activity, i.e. PSC, to behavioral measures was found (r = 0.45, p<0.001 for LISAS). Next, these correlations were examined across distinct striatal functional subregions, revealing lower correlation values in the contralateral motor subregion (r = 0.23, p = 0.05) compared to ipsilateral motor subregion (r = 0.42, p < 0.001) and non-motor associative subregions (r = 0.49, p < 0.001; Fig 3.)

Utilizing 7T and fast-TR EPI with NORDIC proved beneficial for observing significant correlations between striatal subregion activity and motor performance at the individual subject level. Our results show higher striatal activity in poorer performers and lower activity in better performers, suggesting increased striatal engagement during more effortful motor learning. Importantly, this correlation was strongest in the non-motor associative subregions, which are known to be involved in attention and learning.
Guy BAZ (Tel aviv, Israel) , Rita SCHMIDT
15:30 - 16:15 #54224 - P258 Impact of vigilance fluctuations and arousal events on brain activity during motor imagery tasks: a simultaneous EEG-fMRI study.
P258 Impact of vigilance fluctuations and arousal events on brain activity during motor imagery tasks: a simultaneous EEG-fMRI study.

Motor imagery (MI), the mental rehearsal of a motor act without overt movement [1-3], is essential for rehabilitative brain-computer interfaces (BCIs) [4]. Electroencephalography (EEG) is the modality of choice for MI BCIs [5], but fMRI has also been utilized [6]. Brain activity during MI is recorded as a decrease in EEG power across the alpha (8-12 Hz) and beta (13-30 Hz) bands (event-related desynchronization/ERD) [7], or as an increase in task-evoked (TE) BOLD fMRI signal [8], over motor brain regions. The efficacy of MI BCIs is limited by the inherent variability of MI brain activity [9]. This manifests as MI BCI illiteracy and has precluded clinical translation [10]. Influencing this variability is the level of task engagement [11], potentially driven by vigilance fluctuations and arousal events. Vigilance is a state of sustained alertness, while arousal is a transient change in alertness [12]. Here, we extract multidimensional features of vigilance and arousal phenomena, based on electrophysiology (localized EEG band power ratios), behavior (eye blinks), and autonomic function (heart beats) [13-15]. We investigate whether these capture some of the variability observed within subjects (across trials) and between subjects in MI brain activity measured using both EEG and fMRI.

Brain activity from 15 subjects performing two upper-limb MI tasks, Graz (MI only) and NeuRow (MI with action observation/AO in virtual reality [16]), was measured using simultaneous EEG-fMRI across two sessions [17]. The block experiment comprised 54 trials for each task, evenly split between two conditions (left and right arm), and each trial lasted 10 s, evenly split between two segments (baseline and MI). Figure 1 summarizes the methodology. EEG and ECG signals were corrected for MR-induced artifacts. Eye blinks were detected from frontal EEG channels to extract blink events as well as mean blink rate and duration [18-19]. Subsequently, the EEG data were preprocessed to extract MI ERD in 4 frequency bands (averaged across channels exhibiting significant ERD across subjects) and EEG vigilance measures. ECG was preprocessed to extract heart rate and heart rate variability measures. MI TE BOLD changes were extracted from the motor brain areas (significantly activated across subjects; Figure 2B). For each measure, the mean relative change from baseline to MI was computed in each trial of each session and subject. These features were analyzed at both the trial level (1620 samples: 54 trials per session, 2 sessions per subject, 15 subjects) and subject level (15 samples, by averaging across trials and sessions). They were entered in a hierarchical analytical framework establishing univariate trends as well as bivariate (linear mixed effects or LME) and multivariate (canonical correlation analysis or CCA, only across subjects) relationships between MI brain activity and vigilance and arousal.

We found significant band ERD and BOLD increase during MI across subjects, with no significant differences between right and left arm or between Graz and NeuRow tasks (Figure 2A). Among the bivariate relationships, the MI fMRI activation exhibited a significant association with arousal features across trials (within-subject): negatively with EEG fronto-occipital beta power (FOBP) and positively with mean heart rate (Figure 3). Among the multivariate relationships, latent MI response exhibit significant canonical correlations with latent blink arousal, which better generalizes for the NeuRow task (Figure 4). Their structure correlations explain that the effects in the dominant CCA model (Mode 1) are driven by the following indirect relationships: positively between ERD and blinks; negatively between TE BOLD and blinks; and negatively between TE BOLD and ERD. Besides showing effects of arousal as measured by eye blinks on brain activation measured with both EEG and fMRI, these results also provide multivariate evidence of EEG-fMRI coupling during task.

We provide evidence that stronger MI brain responses measured by both EEG and fMRI are associated with increased vigilance during MI task relative to baseline, possibly explaining part of the variability observed across trials and subjects. Increased task engagement may be subserved by higher FOBP indicating greater wakefulness [20]; fewer blinks refreshing visual attention [21-22]; and higher mean heart rate increasing sympathetic tone for motor programming [23-24]. The latter is linked with AO in stroke patients [25], suggesting AO strengthens the context-dependent relationships between MI responses and vigilance and arousal.

This study establishes the impact of vigilance fluctuations and arousal events on brain activity, acquired using simultaneous EEG-fMRI, during MI BCI tasks. Future studies should augment MI BCI classifier training, or constrain fMRI correlates of MI, with vigilance and arousal features. In turn, these facilitate the development of EEG-only rehabilitative BCI systems.
Don Enrico ESTEVE (Lisbon, Portugal) , Neil MEHTA , Frederico SANTIAGO , Athanasios VOURVOPOULOS , Patrícia FIGUEIREDO
15:30 - 16:15 #54369 - P259 Regional Coupling Between Amyloid-β Deposition and Resting-State BOLD-Derived Cerebrovascular Reactivity in Simultaneous PET/MRI.
P259 Regional Coupling Between Amyloid-β Deposition and Resting-State BOLD-Derived Cerebrovascular Reactivity in Simultaneous PET/MRI.

Simultaneous PET/MRI enables the integrated assessment of molecular pathology and functional neurovascular dynamics within a single acquisition framework. In Alzheimer’s disease (AD) and related neurodegenerative disorders [1,2], amyloid-β accumulation and cerebrovascular dysfunction are key pathological features that may interact through impaired neurovascular coupling. Although cerebrovascular dysfunction may contribute to amyloid accumulation, neuronal injury, and disease progression, the spatial relationship between regional amyloid burden and vascular function remains insufficiently characterized. Cerebrovascular reactivity (CVR), the ability of blood vessel to dilate and adapt in response to a vasoactive stimulus is considered a crucial marker of vascular health [3]. In this study, we investigated global and regional associations between amyloid-β deposition and relative CVR measures derived from resting-state BOLD fMRI in a simultaneous PET/MRI cohort including patients with AD, mild cognitive impairment (MCI), and frontotemporal dementia (FTD).

Sixty-six AD, 28 MCI and 11 FTD patients underwent simultaneous PET/MRI on a 3T Biograph mMR system (Siemens Healthineers, Forchheim, Germany). The MRI protocol included T1-weighted (MPRAGE, 176 sagittal planes, FOV=256×256mm2, voxel size=1×1×1mm3, TR/TE/TI=2300/2.34/900 ms, FA=8°, AT=5’12’’) and rs-fMRI (voxel size=3.5×3.5×3mm³, FOV=224×224mm², 300 volumes, TR/TE=2040/30 ms, FA=90°, AT=10’20’’). Amyloid-β PET was performed using flutemetamol (18F,Vizamyl, intravenous bolus, 185MBq). PET data were acquired approximately 90min after injection in 3D mode (voxel size=2.3×2.3×5.0mm3,AT=20’). MRI and PET data were preprocessed using FSL [4] and ANTs. Relative CVR maps were derived from rs-BOLD-fMRI (unit %BOLD) using a previously validated approach [5], based on spontaneous global gray matter (GM) BOLD fluctuations as a surrogate marker of vascular tone modulations. PET images were spatially smoothed using a 4-mm full-width at half maximum (FWHM) Gaussian kernel and subsequently normalized to MNI152 1-mm standard space using affine and nonlinear SyN transformations. Atlas-derived regions of interest (ROI) and cerebellar reference masks were inversely transformed to individual PET/fMRI space using nearest-neighbor interpolation to preserve anatomical accuracy. Subject-specific GM masks were generated from structural MRI segmentation using a probability threshold of 0.65 and intersected with ROI masks to reduce white matter (WM) and cerebrospinal fluid partial volume contamination. Regional amyloid-β uptake and CVR maps were normalized using cerebellar GM as reference region. Median normalized amyloid-β uptake and relative CVR values were extracted from cortical and subcortical ROIs derived from the Automated Anatomical Labeling (AAL) atlas, including frontal, prefrontal, temporal, parietal, occipital, hippocampal, thalamic, basal ganglia, and insular regions. Statistical and correlation analyses were performed in RStudio.

Spatial analyses revealed a significant inverse association between regional amyloid-β PET uptake and relative CVR measures (R=−0.76, p<0.001; Figure 1), indicating that higher amyloid burden was associated with lower CVR. No significant correlations were observed between amyloid-β PET uptake and CVR at the global GM or WM level. In contrast, ROI-based analyses demonstrated significant negative correlations in the bilateral pallidum, left putamen, right parietal lobe, right hippocampus, and right insular cortex (Figure 2).

This simultaneous amyloid-β PET/fMRI study demonstrates a spatially specific coupling between amyloid pathology and cerebrovascular dysfunction in dementia syndromes. The absence of global associations, together with regional effects, suggests that amyloid-related vascular impairment may be regionally heterogeneous rather than diffuse. Specifically, higher amyloid-β uptake was associated with lower relative CVR, suggesting that progressive amyloid accumulation may contribute to impaired vascular responsiveness and altered cerebral hemodynamic regulation. Significant associations were predominantly observed in subcortical and associative cortical regions, including pallidum, putamen, hippocampus, insula, and parietal cortex. The involvement of hippocampal and parietal regions is consistent with their known vulnerability in AD, while alterations within basal ganglia and insular regions may reflect a broader disruption of neurovascular and functional connectivity networks.

Simultaneous PET and relative CVR derived from resting-state BOLD-fMRI enables non-invasive mapping of spatial interactions between amyloid deposition and cerebrovascular function. These findings support the potential role of CVR as a complementary imaging biomarker of disease-related vascular impairment and may contribute to a more comprehensive characterization of pathophysiological processes across different neurodegenerative phenotypes.
Maria Celeste BONACCI (Catanzaro, Italy) , Angelina CATRAMBONE , Ilaria CHIMENTO , Alisea SACILOTTI , Rita NISTICÒ , Fabiana NOVELLINO , Andrea QUATTRONE , Aldo QUATTRONE , Antonio Maria CHIARELLI , Maria Eugenia CALIGIURI
15:30 - 16:15 #54636 - P260 Frequency-specific and network-level dysregulation of large-scale brain dynamics in auditory hallucinations.
P260 Frequency-specific and network-level dysregulation of large-scale brain dynamics in auditory hallucinations.

Auditory verbal hallucinations (AVH) are a core symptom of schizophrenia and have been associated with altered prefrontal function, impaired cognitive control, and abnormal activity within language-related brain networks [1]. Traditional neurobiological models often describe AVH in terms of regional hypo- or hyperactivation, particularly within frontal cortex [2]. Previous task-based and resting-state fMRI studies have demonstrated altered switching between task-positive and task-negative networks, as well as abnormal intrinsic low-frequency fluctuations related to hallucination severity [3]. Yet, how spectral properties of intrinsic brain activity and inter-network coordination jointly contribute to AVHs remains insufficiently understood. Here, we investigated frequency-specific alterations in whole-brain dynamics, expressed across independent components and large-scale functional networks.

Participants were sampled from the cohort of schizophrenia patients described by [3]. Patients with mild to severe auditory verbal hallucinations and age- and sex-matched healthy controls underwent functional MRI (GE Discovery 750 3T scanner using an 8-channel head coil) at Haukeland University Hospital, Bergen, Norway. Structural images were obtained using a T1-weighted FSGR sequence (TR = 6.8 ms, TE = 2.98 ms). Functional MRI was acquired using GE-EPI sequence (TR = 2500 ms, TE = 30 ms). The fMRI task was flanker paradigm, consisting of visually presented arrow arranged in congruent and incongruent configurations. Participants were via butten press indicating the direction of the centrally presented arrow, ignoring flanking arrows. The fMRI data was preprocessed using realignment, unwarping, spatial normalization to MNI space, smoothing (8mm kernel), motion regression (12 parameters), CSF and white matter signal removal and bandpass filtering (0.008 -0.09Hz). Spatially constrained ICA analysis was applied using Neuromark template (105 spatial components grouped into functional networks). Group differences were assessed using two-sample t-test design in MANCOVA Gift toolbox, the inter-network organization was testedusing univariate testing. Voxel-wise group contrasts were FDR corrected and computed at p < 0.05. Component time series were analyzed in the frequency domain (0–0.2 Hz range).

Analyses of spatial components revealed cortical differences between patients and controls, encompassing medial and lateral prefrontal cortex, anterior cingulate cortex, insula, and temporal and parietal association areas. The results include both midline structures (medial prefrontal cortex and posterior cingulate/precuneus) and lateral frontoparietal network. Spectral analyses revealed clear and spatially widespread frequency-dependent group differences across multiple independent components. Patients showed lower power at slower frequencies (below approximately 0.08 Hz) and higher power at faster frequencies (around 0.1–0.2 Hz), with these alterations distributed across numerous components rather than confined to a single region or network.

The pattern of increases and decreases of activations across these regions suggests that group differences are not confined to a single locus but instead reflect a reorganization of distributed cortical systems that support higher-order cognitive and affective functions.The effects of spectral analysis suggests that group differences are not limited to isolated nodes but instead reflect more global changes in the temporal organization of activity across the system. At the systems level, the findings are consistent with altered patterns of interaction among default mode, salience, and central executive networks, pointing to disrupted coordination between task-positive and task-negative systems and a potential breakdown in the dynamic reallocation of resources required for flexible cognitive control.

These findings indicate that schizophrenia patients with AVHs show frequency-specific dysregulation of intrinsic brain dynamics and altered synchronization of large-scale functional networks. Rather than reflecting region-specific dysfunction, our results revealed impaired regulation of brain-states across frequencies and networks during task and rest periods. The reduced low-frequency power may reflect impaired sustained attention and cognitive control even when demands for task-processing were present. Disrupted coordination between default mode, salience, and central executive networks further supports the hypothesis that AVHs involve failure in switching between internally and externally oriented cognitive states. These results highlight the importance of large-scale network interactions as potential targets for biomarkers and interventions in schizophrenia.
Katarzyna A. KAZIMIERCZAK (Bergen, Norway) , Lydia B. SANDØY , Frank RIEMER , Jaroslav HLINKA , Renate GRUNER , Kenneth HUGDAHL
15:30 - 16:15 #54321 - P261 Interictal redundancy: an emerging higher-order signature of the epileptogenic network.
P261 Interictal redundancy: an emerging higher-order signature of the epileptogenic network.

Network neuroscience moves beyond the study of isolated brain regions towards formal investigation of the interactions between them. In focal epilepsy, the epileptogenic network (EN) concept explains how seizures emanate not from an isolated lesion or focus but rather from the collective dynamics of an aberrant system. Multivariate information theory offers a powerful language for describing the emergent properties of a network. As a higher-order framework, multivariate information can disentangle interactions between three or more variables to illustrate the relationship between the “whole” and “parts” of a system. Ultra-high field fMRI is well placed for probing distributed brain networks. Considering this, we retrospectively computed the O-information of ENs from the 7 Tesla (7T) resting-state fMRI (rs-fMRI) data of drug-resistant focal epilepsy patients. We further investigated these findings in the context of traditional connectivity measures.

We studied a cohort of 50 patients diagnosed with drug-resistant temporal lobe epilepsy (TLE, n=24) or non-temporal lobe epilepsy (NTLE, n=26). All patients underwent 7T MRI B1+ and T1 mapping followed by rs-fMRI. Scans were conducted by a whole-body MAGNETOM or MAGNETOM TERRA system (Siemens Healthineers, Erlangen, Germany) using a 1H 1Tx/32Rx head coil (Nova Medical, Wilmington, USA). A subset of patients (n=35) also underwent 3 Tesla diffusion MRI (dMRI) using a MAGNETOM VERIO or MAGNETOM VIDA system. Following French guidelines, stereotactic-EEG (SEEG) was performed on all patients as part of presurgical workup. All T1 images were B1+ corrected, skull-stripped and segmented using FreeSurfer (v8.1.0). rs-fMRI data was preprocessed with fMRIPrep (v25.1.2) followed by nuisance regression. Anatomically-constrained tractography was performed on preprocessed dMRI data using MRtrix3 (v3.0.8). BOLD time series and streamline-weighted structural connectomes were parcellated using the Virtual Epileptic Patient atlas. Regional epileptogenicity index (EI) values were computed from patient SEEG recordings and used to define ENs. Regions that displayed an EI ≥ 0.4 or 0.1 ≤ EI < 0.4 were assigned to epileptogenic zone (EZ) and propagator zone (PZ) subnetworks respectively. We will refer to regions assigned to EZ or PZ subnetworks as also belonging to that patients' EN (EN = EZ + PZ). We applied multivariate information theory to all patient ENs and corresponding EZ and PZ subnetworks where possible. As defined by Rosas et al. (2019), the O-information (Ω) is a signed measure that both quantitatively and qualitatively describes information-sharing in a system. When Ω > 0 for a given network, that network is said to be dominated by redundant information. When Ω < 0, the network is said to be dominated by synergistic information. We computed O-information on BOLD time series data using HOI (v0.0.7) at the maximal interaction order of the network or subnetwork in question. We computed network-level connectivity metrics from dMRI data related to connection strength (weight, density) wiring costs (length) and modularity. We also extracted the mean Euclidean distance between region centroids and Pearson’s correlation (functional connectivity) for each network from patient rs-fMRI data.

We observed a significant difference in O-information between the EZ, PZ and EN independent of epilepsy type (Figure 1A). Patient EZs and ENs tended to display positive O-information (Figure 1B) indicating redundant information-sharing. A significant difference in mean weight was observed between redundant and synergistic EZs (Figure 2A). Across all other connectivity metrics, on average, redundant networks showed slightly higher values compared to synergistic networks apart from Euclidean distance, where a significant difference was observed between EZs. PLS regression revealed connectivity metrics to jointly predict the O-information axis (Figure 2B).

Redundancy and synergy are related to a networks' connectivity profile. Redundant information-sharing appears to follow structural connections whereas synergy dominates in instances of a spatially-distributed system. Strong connections at the EZ in the presence of high wiring costs could indicate a maladaptive network. Positive O-information when regions involved early in the ictal process are contained in a network suggests an underlying relationship between redundancy and epileptogenicity. Seizures are often identified by highly synchonous signals during SEEG. Interictal redundancy and the transfer of undifferentiated information between epileptogenic regions could provide foundations for seizure emergence. Characterisation of the wider EN as a redundant system where connectivity effects weaken may hold important implications for surgical candidacy.

The EZ and wider EN are dominated by redundant information during interictal periods.
Jacob KNIGHT , Matteo NERI , Julia MAKHALOVA , Samuel MEDINA VILLALON , Hugo DARY , Jean-Philippe RANJEVA , Andrea BROVELLI , Fabrice BARTOLOMEI , Maxime GUYE , Roy HAAST (Marseille)
15:30 - 16:15 #53353 - P262 Fast BOLD fMRI Reveals The Spatiotemporal Complexity Of Neurovascular Coupling Alterations In Cerebral Small Vessel Disease.
P262 Fast BOLD fMRI Reveals The Spatiotemporal Complexity Of Neurovascular Coupling Alterations In Cerebral Small Vessel Disease.

Fast BOLD fMRI, despite insightful studies [1], has not yet found its way into common fMRI applications, particularly in clinical settings. The advantage of using fast BOLD usually comes with ultra-high-field MR scanners, given their purported capillary-weighted BOLD signal [2]. Here, we characterized the visually evoked fast (300 ms TR) BOLD fMRI responses across multiple ROIs at 3T in control subjects. We then focused on patients suffering from a specific Small Vessel Disease (SVD): cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL). Previous fMRI studies had discordant results regarding the functional CADASIL fingerprint. Here, we explored whether fast BOLD fMRI could discriminate pre-/pauci-symptomatic CADASIL patients from sex- and age-matched control subjects [3,4].

MRI data were acquired on a Siemens 3T Verio scanner with a 32-channel head coil. High-resolution anatomical images were obtained using a 1 mm isotropic MP-RAGE sequence. Functional data were collected with a standard 2D GRE-EPI sequence optimized for high temporal resolution (TR=300 ms, TE=30ms, flip-angle=38°; 12 slices, 3 mm isotropic voxels, MultiBand=3), enabling fine sampling of the hemodynamic response without temporal interpolation. We included 18 CADASIL patients (age range: 32-72 years, mean: 51 years) and 16 healthy controls (age range: 35-71 years, mean: 52). The evoked BOLD MRI data protocol consisted of a flickering checkerboard lasting 2 sec or 10 sec (40 and 4 repetitions, respectively, Fig.1.A).

We used a standard flickering checkerboard stimulus with 2 durations to elicit different vascular activation regimes: an impulsive (2 s) or a sustained (10 s, Fig.1A) response. Averaging the voxels within the calcarine sulcus (CS), we found clear single-stimulus responses (Fig.1B,C). Anatomy or data-driven (t-test) voxel selections displayed similar dynamics, but different signal-to-noise ratios, with the CS and t-test voxel selection providing the biggest responses and lowest noise level (Fig.2). Averaging the 2-second responses in CADASIL and controls within the CS revealed a slowdown of the BOLD signal in CADASIL (Fig.3A), quantified by a significantly different skewness and kurtosis (Fig.3B), also confirmed by the Full Width at Half Maximum (FWHM) and the time at half decay (Fig.3C). Responses to 10-second stimuli further confirmed this trend (Fig.3D), as quantified by the skewness x kurtosis, the duration, and time at half-decay (Fig.3E). The two activation regimes elicited by short and long visual stimuli allowed us to take into account the BOLD amplitude, which is known to strongly depend on the acquisition session, besides the physiological vascular transients. The amplitude of BOLD responses to 2 and 10-second stimuli within the CS did not differ significantly between CADASIL and control subjects, nor did the amplitude of 2-second stimuli within the entire visual cortex. However, 10-second stimuli across the entire visual cortex revealed a significantly lower amplitude in CADASIL (Fig. 3F). Finally, mixing a dynamic parameter computed in the CS, and the amplitude of long stimulation in the entire Vis Cx, produce an almost perfect classifier of CADASIL, highlighting the potential of such multimodal as diagnostic biomarker in pre-/pauci-symptomatic patients (Fig.4A). The correlation with age, instead, suggested that CADASIL patients present an early abnormal BOLD amplitude, since young adulthood, and control subjects approach CADASIL amplitude only in old age (Fig.4B). The correlation of BOLD amplitude in Vis Cx with the relative volume of the White Matter Hyperintensities(WMHs) showed a trend towards a low amplitude when more WMHs are present (Fig.4C).

Here we characterized the visually-evoked fast BOLD fMRI dynamics in different ROIs on the visual cortex at 3 T. We showcased how this unusual fMRI approach could inform about SVDs, even in a pre-/pauci-symptomatic phase and for a genetic form of SVDs for which previous fMRI studies did not yield concordant results. We also showed that dynamic + amplitude parameters have a remarkable potential as diagnostic biomarkers for SVDs.

Our study aims at fostering a more systematic use of fast BOLD fMRI even at relatively low fields, particularly to evaluate SVDs pathological features.
Davide BOIDO , Valentine PEREZ (Paris) , Camélia RESSAM , Benoît BÉRANGER , Marianne CLARY , Ali-Kémal AYDIN , Jessica LEBENBERG , Abbas TALEB , Fanny FERNANDES , Denis RIVIÈRE , Zhong Yi SUN , Jean-François MANGIN , Serge CHARPAK , Hugues CHABRIAT
15:30 - 16:15 #53370 - P263 Multivariate, Network-Specific Classification of mTBI Using ICA in Multi-Echo Multi-Contrast rs-fMRI.
P263 Multivariate, Network-Specific Classification of mTBI Using ICA in Multi-Echo Multi-Contrast rs-fMRI.

Mild traumatic brain injury (mTBI) is a major public health concern worldwide [1]. Conventional structural MRI often shows no detectable abnormalities, yet resting-state fMRI (rs-fMRI) combined with independent component analysis (ICA) has revealed functional connectivity changes in key brain networks in mTBI even in the absence of overt structural changes [2]. Rs-fMRI collected using spin- and gradient-echo (SAGE) imaging enables the simultaneous assessment of microvascular-weighted (spin-echo, T2) and macrovascular-weighted (gradient-echo, T2*) signal components, providing complementary sensitivity to different hemodynamic processes [3]. However, such multimodal neuroimaging data are highly-dimensional and exhibit multicollinearity, making it hard to find reliable candidate biomarkers. This pilot study proposes a multivariate approach that combines ICA-derived network metrics with SAGE imaging to detect subtle network changes in mTBI.

This study included 20 healthy controls (HC, 10 females; mean age 30.2±6.5 years) and 20 patients with mTBI (10 females; mean age 28.0±7.5 years). mTBI participants underwent the Extended Glasgow Outcome Scale (GOS-E) interview [4]. MRI data were collected on a 3.0T Philips scanner using a SAGE echo planar imaging (EPI) sequence [5,6], yielding three contrasts: T2, T2*, and TE2 (analogous to conventional single-echo gradient-echo fMRI). Preprocessing included motion correction, despiking, brain extraction, and nuisance regression. Group-level ICA (MELODIC, FSL) identified five major networks: Visual (VN), Sensorimotor (SM), Executive Control (ECN), Default Mode (DMN), and Cerebellar (CN) [7,8]. Dual regression produced voxel-wise connectivity maps per contrast, from which regional mean Z-values were extracted using the Harvard-Oxford cortical atlas (48 cortical regions) [9]. We used PCA to reduce dimensionality and multicollinearity, retaining components explaining 90% of the variance. Logistic LASSO regression was applied for feature selection and classification [10], with λ tuned via internal cross-validation within a 10-fold framework. Performance was evaluated using stratified 10-fold cross-validation (AUC, sensitivity, specificity). Feature stability was assessed with 5,000 bootstrap iterations, considering components selected in ≥75% of iterations as stable.

No significant group differences were found for age (W=242.5, p=0.255). Within mTBI, mean GOS-E was 6.4±1.1, and time since head injury was 10.5±3.4 days. Table 1 shows classification performance across networks and contrasts. TE2 contrast provided the best discrimination for the CN and SN. T2 contrast provided the best discrimination for the ECN, DMN, and VN. Bootstrap analysis showed highly stable components (selection frequency > 0.95) for most networks. For T2, optimal discrimination was observed in the VN (Figure 1(a)) and ECN (Figure 2(a)). In the VN, T2 principal component 7 (PC7) had stability of 0.986, with effect sizes (g) in the postcentral gyrus of 0.494. In the ECN, T2 PC2 had stability of 0.996, with g=0.670 in the frontal pole and inferior frontal gyrus pars triangularis, and g=-0.924 in the middle temporal gyrus. TE2 was more sensitive for the SN (Figure 1(b)), CN (Figure 3), and DMN (Figure 2(b)). In the SN, TE2 PC8 had stability of 0.987, with robust effects in the insular cortex (g=0.684, PC5) and postcentral gyrus (g=0.608, PC2). In the DMN, TE2 PC2 had stability of 0.989, with g=0.762 in the lingual gyrus and g=0.354 intracalcarine cortex. In the CN (Figure 3), PC1 for TE2 had stability of 0.981.

This pilot study demonstrates that integrating ICA-based network metrics with SAGE contrasts can identify mTBI-related alterations. The PCA+LASSO framework effectively addressed high dimensionality and multicollinearity, yielding stable, network-specific features. TE2 (gradient-echo) showed the strongest performance in the CN and SN, consistent with its sensitivity to macrovascular BOLD signals and long-range connectivity, with key CN contributions from regions such as the precentral gyrus and insula. In contrast, T2 (spin-echo), which is more sensitive to microvascular signals, performed best in the ECN, DMN, and VN, indicating more spatially localized dysfunction in these networks. Overall, these findings underscore the complementary role of SAGE imaging in separating macrovascular and microvascular influences on functional network disruption in mTBI.

The proposed multimodal framework achieves above-chance classification of mTBI from HCs, with network-specific AUCs ranging from 0.66 to 0.88 in the acute phase. The results support using ICA-based functional connectivity with SAGE metrics and sparse multivariate modeling to detect subtle brain changes after mTBI. Larger cohorts are needed to validate these preliminary findings and to determine the clinical utility of combined ICA–SAGE biomarkers for predicting outcomes and guiding management in mTBI.
Shuyi ZHU , Lauren R. OTT , Molly M. MCELVOGUE , Cindy MORENO , Ruchira M. JHA , Ashley M. STOKES , Maurizio BERGAMINO (Phoenix, USA)
15:30 - 16:15 #53062 - P264 Application of functional MRI for assessing neural activity in children with spinal cord injury.
P264 Application of functional MRI for assessing neural activity in children with spinal cord injury.

Spinal cord injury (SCI) is a disruption of integrity and function of spinal cord caused by mechanical impact. The study and treatment of SCI in pediatric patients are of particular relevance in clinical practice. Standard magnetic resonance imaging (MRI) remains the primary diagnostic tool for assessing spinal cord injury. However, routine MRI does not always allow a full assessment of the depth of damage or explain differences in clinical course among patients with similar morphological changes. Incorporating functional MRI (fMRI) into the diagnostic algorithm for SCI enables evaluation of brain neural activity and identification of the reorganization of functional connectivity associated with microstructural abnormalities. Aim of this study is to evaluate the effectiveness of fMRI for detecting functional changes in brain structures in children with spinal cord injury.

The study included 56 patients aged 12–17 years with spinal cord injury. Of these, 26 had complete spinal cord conduction impairment (grade A on the ASIA scale) — Group 1, and 30 children had incomplete injury (grades B–D on the ASIA scale) — Group 2. Tomographic examination was performed using a Philips Achieva 3T dStream scanner. For functional data acquisition, an echo-planar imaging (EPI) pulse sequence was used with the following parameters: TR = 2000 ms, TE = 30 ms, voxel size — 1.8×1.8×3 mm, scan duration — 3 minutes. Motor stimulation was applied using a Korvit plantar support load simulator. The gait simulation parameters were as follows: device pressure — 20 kPa, simulated walking speed — 4 km/h.

Individual hemodynamic response maps to stimulation were generated for each participant, containing information on the coordinates of activated areas, the magnitude of the hemodynamic response, and the level of statistical significance. A region of statistically significant hemodynamic response common to all subjects in both groups was identified — the insular cortex (Fig. 1). Intra-group analysis revealed differences in the extent and location of the hemodynamic response between patients with different injury severities: significant activation of the motor cortex and cerebellum was observed in pediatric patients with incomplete spinal cord injury, whereas no such activity was seen in children with complete injury (Fig. 2). To assess the discriminatory ability of fMRI in distinguishing between Group 1 and Group 2 patients, ROC analysis was performed (Fig. 3). The area under the ROC curve (AUC) was 0.81 (95% confidence interval 0.7–0.93, p < 0.001).

The insular lobe is a region of the cerebral cortex hidden deep within the lateral sulcus, which plays a key role in integrating sensory, emotional, and cognitive information. Furthermore, the present study established that significant activation of the motor cortex and cerebellum is observed in pediatric patients with incomplete spinal cord injury, whereas no such activity is seen in children with complete injury. The relationship we found between the severity of spinal cord injury and the level of activation of primary motor cortex and cerebellum indicates the key role of these structures in the organization and conduction of signals along the descending motor pathways. The results obtained from the ROC analysis (AUC = 0.81) demonstrate the high reliability and validity of the proposed method. The identified high sensitivity (92.3%) indicates that fMRI correctly classifies the vast majority of patients according to injury severity, minimizing the number of false-negative results. This property makes the technique promising for use at the primary screening stage.

Functional magnetic resonance imaging is an informative and effective method for assessing the state of the spinal cord after traumatic injury. This technique allows characterization of pathological changes at a level unattainable by other diagnostic approaches. The quantitative parameters obtained can serve as a basis for developing objective assessment criteria applicable for monitoring the effectiveness of treatment and rehabilitation in children with spinal cord injury.
Maxim UBLINSKIY (Moscow, Russia) , Tolibdzhon AKHADOV , Alexey YAKOVLEV , Olga BOZHKO
15:30 - 16:15 #54559 - P265 Perfusion-Discordant Hypoxia-BOLD Hotspots in the Non-Enhancing Glioblastoma Margin: Voxelwise DSC Regression and Biopsy Validation.
P265 Perfusion-Discordant Hypoxia-BOLD Hotspots in the Non-Enhancing Glioblastoma Margin: Voxelwise DSC Regression and Biopsy Validation.

Glioblastoma infiltrates beyond the contrast-enhancing margin. This non-enhancing component drives early recurrence and resists surgical targeting [1, 2]. DSC perfusion MRI quantifies macrovascular parameters but does not interrogate the oxygen supply and demand balance. Hypoxia-BOLD MRI applies a controlled arterial hypoxic stimulus during acquisition, generating signal maps reflective of local deoxygenation physiology [3, 4]. Whether any component of the hypoxia-BOLD signal is independent of DSC perfusion parameters has not been established in glioblastoma.

Seventeen patients with newly diagnosed GBM underwent preoperative DSC and hypoxia-BOLD MRI. Isocapnic hypoxia was delivered using a prospective end-tidal gas targeting system [5, 6]. Voxelwise temporal decomposition yielded a steady-state deoxygenation metric (HypoxiaSS) and kinetic metrics reflecting deoxygenation speed (DTP) and re-oxygenation speed (DTR) per patient [7]. CBF was excluded after collinearity detection (VIF > 60 with CBV). OLS regression was performed per patient in the contrast-enhancing (CE) and FLAIR compartments, regressing each BOLD metric against CBV, MTT and K2. R2 and standardised beta coefficients were summarised using Wilcoxon signed-rank tests. Residual maps were computed in native space and overlaid on T1CE. In a separate biopsy cohort (N = 8), informed by RANO recommendations for sampling non-enhancing tumor tissue [8], neuronavigation-guided samples were obtained from hypoxia-BOLD hotspots within the non-enhancing zone and reviewed histopathologically.

DSC predictors explained a median 44 % of HypoxiaSS variance (R2 = 0.42 CE, 0.46 FLAIR). CBV was the dominant independent predictor in both compartments (β = −0.49 CE, p < 0.001; β = −0.58 FLAIR, p < 0.001). MTT contributed independently in FLAIR (β = −0.07, p = 0.006). The residual 56 % of variance was spatially structured: discrete hotspots were present in both CE and FLAIR compartments in an anatomically coherent pattern, arguing against stochastic noise. DTP and DTR showed R2 < 0.05 against all DSC predictors in both compartments, with no predictor reaching consistent significance. Seven of eight biopsies from hypoxia-BOLD hotspots in the non-enhancing zone showed tumor infiltration.

CBV dominance is physiologically expected. The hypoxia-BOLD signal reflects dOHb distribution through local vasculature, which scales with CBV [9, 10]. During short hypoxic epochs, dOHb susceptibility changes precede CBF augmentation, indicating that the signal is not primarily flow-driven [11]. The structured spatial distribution of the residual argues against stochastic noise. DTP and DTR were fully discordant from all DSC parameters. The kinetic dimensions of deoxygenation and re-oxygenation are physiologically dissociable from perfusion magnitude [12] and appear to represent a dimension not covered by the included DSC metrics. Biopsy supports the biological relevance of hotspots identified in the non-enhancing zone. Residual map correlation with hypoxia PET is a planned validation step.

Hypoxia-BOLD MRI provides signal components potentially not captured by DSC perfusion in glioblastoma. HypoxiaSS contains a spatially structured residual unexplained by CBV, MTT or K2. DTP and DTR are fully independent of all DSC metrics. Biopsy validation in a separate cohort confirms tumor infiltration at BOLD-defined hotspots in the non-enhancing zone.
Tristan SCHMIDLECHNER (Zurich, Switzerland) , Vittorio STUMPO , Leonie ZERWECK , Christiaan Hendrik Bas VAN NIFTRIK , Jorn FIERSTRA
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I14
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Poster 4
FT4 Preclinical MR | Spectroscopy, Hyperpolarization & CEST

16:15 - 17:00 #54644 - P266 Toward harmonized preclinical MRI: A multicenter approach to quality control.
P266 Toward harmonized preclinical MRI: A multicenter approach to quality control.

The paradigm shift towards open science and multicenter preclinical research is bringing long-overdue attention to the importance of strict adherence to FAIR data principles [1, 2]. The reliability and comparability of shared imaging data depends entirely on underlying data quality. While clinical MRI studies operate under rigorous Quality Assurance (QA) mandates [3], preclinical research frequently lacks standardized frameworks [4]. The combination of highly customized hardware configurations, divergent software platforms, and missing standards at both levels can lead to quality fluctuations that can jeopardize experimental findings [4]. This study introduces a standardized QA and Quality Control (QC) phantom protocol evaluated across an international multicenter collaborative to establish performance benchmarks, assess reproducibility, and monitor longitudinal scanner stability.

A longitudinal study was conducted across various independent laboratories using standardized commercial rat and mouse brain phantoms measured at diverse magnetic fields of 3.0, 7.0, 9.4, and 16.4 T. Operators followed a harmonized acquisition protocol encompassing structural (T1 and T2 RARE) and functional (GE-EPI) sequences. All acquired raw data were converted to the Brain Imaging Data Structure (BIDS) format. Centralized processing was automated using the AIDAqc software [5] to extract quantitative metrics. For structural images, standard Signal-to-Noise Ratio (SNR) and temporal instability (motion equivalent) were computed. For functional sequences, temporal SNR (tSNR), temporal instability (motion equivalent), and Nyquist ghosting artifacts were quantified. SNR, tSNR were calculated via automated Region of Interest (ROI) placement while motion and ghosting artifacts were calculated using mutual information algorithms.

In total, 21 independent datasets encompassing diverse spatial resolutions and receiving coil configurations (e.g., surface, volume, array) were collected and made publicly available. Analysis revealed, as expected, that higher magnetic fields (9.4 and 16.4 T) yielded significantly higher SNR and tSNR compared to 3.0 and 7.0 T systems in both rat and mouse phantoms. However, higher fields presented distinct artifact profiles; notably, the 16.4T mouse scanner demonstrated a severe, highly significant increase in ghosting artifacts despite a reduction in motion-equivalent variability. When evaluating acquisitions at 7.0 T field strength, radiofrequency (RF) coil configuration emerged as a major determinant of image quality. Certain surface and millipede-style coils exhibited drastic reductions in tSNR and elevated functional ghosting compared to array setup. Longitudinally, most systems demonstrated stable performance, confirming the overall technical health of participating scanners.

The findings highlight that while ultra-high magnetic fields improve sensitivity [6], they introduce severe trade-offs regarding B0/B1 inhomogeneities and phase-encoding instabilities [7], reinforcing the need to decouple basic signal performance from true data usability. Artifacts such as ghosting and temporal instability must be considered primary QA parameters, rather than secondary outcomes, particularly for EPI-based sequences [8]. The implementation of unified Standard Operating Procedures (SOPs) is essential to prevent hardware interventions or significant drifts from being misinterpreted as biological effects in longitudinal in vivo studies. Routine phantom-based QA, encompassing expanded metrics beyond simple SNR, is both feasible and critical to shift preclinical MRI from reactive troubleshooting to proactive quality management, establishing a cornerstone for best practices in imaging core facilities [9]

This study introduces a standardized QC protocol tailored for the longitudinal evaluation of system stability across multicenter preclinical MRI facilities. Implementing QC/QA routines, automated surveillance is essential to detect potential hardware drift, ensure long-term data reproducibility, and establishing a robust and scalable foundation for FAIR data principles in open science.
Balbino YAGUE (Granada, Spain) , Aref KALANTARI , Giovanna D. IELACQUA , Markus ASWENDT
16:15 - 17:00 #54513 - P267 Preclinical investigation of brain gray matter microstructure with NEXI in two models of neurological disorders.
P267 Preclinical investigation of brain gray matter microstructure with NEXI in two models of neurological disorders.

Neurite Exchange Imaging (NEXI) is a gray matter (GM) microstructural model of diffusion [1] which accounts for and estimates four parameters: the inter-compartment exchange time tex, the intra- and extra-cellular diffusivities Di and De and the neurite (or cell processes) signal fraction f (Fig 1). NEXI has been successfully applied in rodent brains in vivo [1], and ex vivo [2]; and in human brains post mortem [3] and in vivo [4, 5, 6, 7]. However, NEXI has seen limited application in pathological conditions. Here, we assess the potential of NEXI to characterize pathology in vivo by investigating microstructural brain alterations in two rat models of neurological disorders: Creatine Transporter Deficiency (CTD), a genetic disorder caused by mutations in the SLC6A8 gene that impair creatine transport in the brain, leading to intellectual disability, behavioral abnormalities, and motor dysfunction [8,9]. Here, we focus on female heterozygous (HTZ) SLC6A8 rats. Type C hepatic encephalopathy (type C HE), a neurological complication of chronic liver disease that leads to severe motor and cognitive impairment [10, 11]. Here, we use the bile duct ligation (BDL) rat model of HE.

MRI data were acquired on a 9.4 T preclinical MRI system using a 2×2 receive-only cryoprobe and a quadrature volume transmit coil. Animals were under isoflurane anesthesia (2%). For the CTD model, 2 female WT and 3 female HTZ SLC6A8 rats were scanned. For the BDL model, 4 male BDL and 2 male WT rats were scanned. The diffusion MRI protocol is shown in Fig. 2. Pre-processing included denoising, Gibbs unringing, TOPUP, and eddy-current correction [12-14]. We fitted NEXI using the Swiss-Knife toolbox. An atlas [15] was registered to the diffusion MRI images to delineate the cerebellum and hippocampal formation (including the hippocampus and dentate gyrus, hereafter referred to simply as hippocampus) as these regions were shown to be involved in CTD [8,9] and type C HE [11,16,17]. Mean NEXI estimates were extracted from these regions and subsequently compared across groups within each disease model.

CTD (Fig. 3): Given the low number of animals, no formal statistical comparison was made. In spite of this, group differences were quite pronounced. In the cerebellum, extra-cellular diffusivity De was markedly higher in CTD animals compared with WT controls, with a trend of elevated intra-neurite diffusivity Di as well, whereas tex and f showed no clear trend. In the hippocampus, initial data suggest elevated De and tex vs lower f and Di in CTD animals compared with WT controls. Type C HE (Fig. 4): Group differences were again quite marked in spite of the low counts. De was elevated and f reduced in BDL vs WT rats both in the cerebellum and the hippocampus. Trends for tex (and to a lesser extent for Di) were region-specific: elevated in the cerebellum and reduced in the hippocampus of BDL vs WT rats.

In both animal models, the overall trend of increase in extra-cellular diffusivity and decrease in neurite fraction suggest reduced cell density. For CTD rats, trends in the cerebellum are consistent with previous histological findings of reduced spine density, diameter and length in male knock-in CTD rats [8]. NEXI trends in the hippocampus suggest different mechanisms to the cerebellum, evocative of intra-cellular injury and reduced membrane permeability (reduced Di and elevated tex). In BDL rats, the hippocampus and the cerebellum were histologically characterized by reduced process count and length, and spine length [11]. NEXI trends in the cerebellum (elevated Di and tex) are indeed consistent with these hallmarks, as reduced ramifications and spines lead to reduced membrane surface for exchange and faster diffusivity [1, 18]. The hippocampus, on the other hand, shows a more complex signature from possibly competing mechanisms. Overall, these results should be interpreted as preliminary trends given the small sample sizes. It should also be noted that we did not acquire the images at ∆=38 for one of the 2 WT animals (in red in Fig. 3), which makes it less comparable with its peers.

This study provides preliminary evidence of microstructural alterations in female heterozygous rats of Creatine Transporter Deficiency disease and male rats of type C Hepatic Encephalopathy, characterized using NEXI. While some parameter trends are common to both models and brain regions (reduced f, faster De), the NEXI exchange time and intra-neurite diffusivity display patterns that are animal model- and ROI-specific. These parameters are also the noisiest to estimate, but histological validation could confirm whether they yield relevant information about variable dominating pathological mechanisms between spine loss, trans-membrane transport or myelination. These findings support the potential of NEXI as a promising approach for future in vivo gray matter microstructure mapping and the study of brain disorders.
Rita OLIVEIRA (Lausanne, Switzerland) , Pauline LÉAL , Thi Ngoc ANH DINH , Louis CUENDET , Eloïse MOUGEL , Tan Toi PHAN , Olivier BRAISSANT , Cristina CUDALBU , Ileana JELESCU
16:15 - 17:00 #54376 - P268 Longitudinal functional and structural connectivity remodeling after cortical and cortico-striatal stroke in mice.
P268 Longitudinal functional and structural connectivity remodeling after cortical and cortico-striatal stroke in mice.

Stroke disrupts brain networks beyond the infarct core, but it remains unclear how lesion size and topography jointly shape functional connectivity (FC), structural connectivity (SC), and their dynamic relationship during recovery. We combined two longitudinal mouse MRI projects comparing small photothrombotic cortical stroke and larger cortico-striatal middle cerebral artery occlusion (MCAO) to define model-specific FC/SC trajectories and motivate future SC-FC coupling biomarkers [1,2].

Longitudinal MRI data were obtained from previous studies [3-5]. Adult male mice underwent MRI before stroke and at 1, 2, and 4 weeks after photothrombotic cortical stroke (N=25) or transient cortico-striatal MCAO (N=6) [1,2]. Imaging was performed on a 9.4 T Bruker BioSpec 94/20USR system with cryo-coil and ParaVision 6.0.1. Lesions were mapped using T2-weighted Turbo-RARE imaging (TR/TE=5500/32.5 ms; PT voxel 68.4 x 68.4 x 300 µm³, FOV 17.5 x 17.5 mm²; MCAO voxel 68.4 x 68.4 x 200 µm³, FOV 17.5 x 17.5 mm²). FC was quantified from rs-fMRI (TE=18 ms; PT TR=1420 ms, MCAO TR=2840 ms; voxel 182 x 182 x 500 µm³). SC was quantified from diffusion tractography using DTI in PT mice (TR/TE=3000/17.5 ms; voxel 141 x 141 x 400 µm³; b=677 s/mm²; 30 directions) and Q-ball/DSI in MCAO mice (TR/TE=3500/20 ms; voxel 139 x 139 x 500 µm³; b=2000 s/mm²; 126 half-sphere directions) [1,2]. Data were processed with AIDAmri and registered to the Allen Mouse Brain Atlas [6]. Intra- and interhemispheric connectivity matrices and regional seed strength were calculated for sensorimotor cortex, striatum, thalamus, corpus callosum, and corticospinal tract. Longitudinal changes were assessed relative to baseline using linear mixed-effects models with multiple-comparison correction [1,2].

The stroke models differed strongly in lesion volume and topology: cortical lesions were smaller and mainly sensorimotor (1.41 ± 0.92% of brain volume), whereas MCAO lesions were larger and involved cortico-striatal territories (11.53 ± 2.80%) [1,2]. FC showed opposite model-specific trajectories. Cortical stroke induced widespread hyperconnectivity at weeks 1-2, with approximately 90% of selected connections increased, followed by partial normalization by week 4. In contrast, cortico-striatal stroke caused global FC hypoconnectivity at week 1, with more than 90% of connections decreased, a heterogeneous shift toward baseline at week 2, and widespread decreases persisting at week 4. Sensorimotor connections with opposite FC changes separated the models at all post-stroke time points, and regional lesion involvement scaled with baseline-referenced FC alterations [2]. SC showed a distinct but complementary pattern: large cortico-striatal lesions increased structural connectivity in sensorimotor and thalamic networks, especially contralesionally, whereas small cortical lesions produced asymmetric SC changes, with increases extending from the ischemic hemisphere and decreases originating from the contralateral hemisphere [1]. Seed-strength analysis identified region- and hemisphere-specific drivers of these changes.

Together, the results indicate that lesion topography determines the magnitude, direction, and timing of post-stroke network reorganization. Cortical stroke showed early FC hyperconnectivity and asymmetric SC remodeling, consistent with peri-infarct and interhemispheric compensation. Cortico-striatal stroke showed early FC disruption despite progressive or contralesional SC strengthening, suggesting a temporary dissociation between functional communication and structural remodeling. Ongoing work will quantify longitudinal SC-FC coupling to test whether coupling changes distinguish stroke models and identify adaptive versus maladaptive network states.

Longitudinal multimodal MRI reveals distinct FC and SC trajectories after cortical and cortico-striatal stroke in mice. Integrating FC, SC, and SC-FC coupling may provide network-level biomarkers for lesion-specific recovery mechanisms and guide optimal windows for targeted post-stroke interventions.
Fatemeh Sadat NEMATOLLAHZADEH MAHANI (Frankfurt, Deutschland, Germany) , Markus ASWENDT
16:15 - 17:00 #54607 - P269 Magnetization transfer imaging reveals distinct temporal microstructural changes in a rat model of intracerebral hemorrhage.
P269 Magnetization transfer imaging reveals distinct temporal microstructural changes in a rat model of intracerebral hemorrhage.

Magnetization transfer (MT) MRI provides indirect information on tissue macromolecular content through interactions between free and semi-solid proton pools. While MT has been widely applied in neurological disorders, its temporal pattern in intracerebral hemorrhage (ICH) remains poorly understood, particularly regarding hematoma evolution and peri-lesional tissue remodeling.

Magnetization transfer (MT) MRI provides indirect information on tissue macromolecular content through interactions between free and semi-solid proton pools. While MT has been widely applied in neurological disorders, its temporal pattern in intracerebral hemorrhage (ICH) remains poorly understood, particularly regarding hematoma evolution and peri-lesional tissue remodeling. Magnetization transfer (MT) imaging was performed using a 2D RARE sequence preceded by an off-resonance saturation pulse. The MT saturation consisted on a train of Gaussian-shaped RF pulses (N = 50) of bandwidth = 550 Hz, length = 5 ms, power=5.5 µT, and offset =2000Hz (~6.7 ppm). MT-weighted images were acquired with and without the saturation pulse (MT_ON and MT_OFF). Sequence parameters were: TR = 5 s, effective TE = 10 ms, RARE factor = 2, in-plane resolution = 0.167 × 0.167 mm², slice thickness = 1 mm, and 15 contiguous slices. For lesion delineation, T2-weighted images were acquired using a 2D RARE sequence (TR=5s, effective TE=36 ms, RARE 8, 4 averages, in-plane resolution=0.125x0.125 mm², 30 slices, 1mm thickness). Magnetization transfer ratio (MTR) maps were calculated as: MTR (%) = ((MT_OFF − MT_ON) / MT_OFF) × 100. Regions of interest (ROIs) corresponding to the hematoma core and peri-lesional tissue were manually defined on T2-weighted images and transferred to the MTR maps. MTR values were normalized to the contralateral homologous region to reduce inter-subject variability and coil sensitivity effects. Statistical data treatment was performed using one-way ANOVA or Kruskall-Wallis test and a post-hoc test for multiple comparisons was applied.

After ICH, the hematoma core exhibited markedly reduced MTR values that progressively increased over time, from the hyperacute phase (2 h) to 21 dpi. In contrast, the peri-lesional region showed an initial decrease in MTR up to 3 dpi, followed by an increase in the chronic phase, at 7 and 21 dpi. The longitudinal study in rats reflected a similar timecourse, with statistical significant differences in both areas across timepoints.

The gradual increase in MTR within the hematoma core suggests evolving macromolecular changes during clot maturation, potentially related to protein aggregation related to fibrin maturation, hemoglobin degradation, and structural reorganization within the hematoma. On the other hand, the time-course in the peri-lesional tissue may reflect early edema formation and tissue disruption, followed by later processes such as cell recruitement, gliosis, inflammation, and extracellular matrix remodeling. Previous results in HE and Martius Scarlett Blue staining correlated with changes pointed out in the core and perilesional areas. Although extracellular iron deposits were detected at chronic stages (7 and 21dpi) using Perls staining, these did not produce a marked reduction in MTR.

MT MRI reveals distinct and region-specific temporal patterns in both the hematoma core and peri-lesional tissue following ICH. These findings highlight the sensitivity of MTR to dynamic microstructural and macromolecular changes in ICH and supports its potential value as a complementary tool for monitoring hemorrhagic brain injury progression.
Clàudia CALVET-SOLER , Silvia LOPE-PIEDRAFITA , Santiago ROJAS , Gemma MANICH (Cerdanyola, Spain)
16:15 - 17:00 #54496 - P270 Opportunities and pitfalls in preclinical cerebral blood flow mapping using arterial spin labelling MRI: insights from multicentre data.
Opportunities and pitfalls in preclinical cerebral blood flow mapping using arterial spin labelling MRI: insights from multicentre data.

Cerebral Blood Flow (CBF) is a vital physiological parameter ensuring continuous gas exchange and glucose supply to the brain (1, 2). Arterial spin labelling (ASL) MRI quantifies CBF non-invasively by magnetically tagging blood as an endogenous tracer (3-6). While clinical ASL has benefited from standardisation, preclinical rodent imaging lacks it, leading to high variability in reported values. Methodological differences, particularly between Pulsed ASL (FAIR) and pseudo- continuous ASL (pCASL), may introduce some bias. FAIR is favoured for its technical simplicity, while pCASL offers improved labelling but higher sensitivity to vascular geometry. Quantification is further complicated by assumptions regarding T1 and inversion efficiency (IE), exacerbated by ultra-high field inhomogeneities. Additionally, anaesthesia and C02 levels perturb baseline physiology. This study aims to define a normative CBF range through multi-site experiments and a novel meta-analysis.

Study Overview: This work investigates CBF variability: a single-site variability study across two international centres (UK and Portugal) and a meta-analysis of cross-site factors. Site 1 (UK): 7 male C57BL/6 mice sedated under isoflurane induction and maintained with medetomidine. Perfusion was measured via PASL (FAIR-EPI) at a single TI (2s). Site 2 (Portugal): 9 female mice (C57BL/6 and C57BL/6-DBA/2) comparing anaesthesia and strains. Perfusion was measured using pCASL with a cryogenic coil. Quantification included voxel wise T 1 mapping (inversion recovery spin-echo EPI) and explicit IE estimation via pCASL-encoded FLASH. Meta-Analysis: A systematic search (2010–2025, <3T) identified 28 papers (23 mouse, 5 rat) meeting healthy wild-type criteria. Cortical CBF values were categorised to assess the impact of field strength, sequence, strain, and anaesthesia. Statistical analysis used Shapiro-Wilk and Mann-Whitney tests, alongside ANCOVA and Tukey's HSD post-hoc tests to isolate drivers of inter-site variability.

Direct comparisons across the two sites demonstrate that physiological state significantly dictates perfusion. Hypercapnia (CO2 > 45mmHg) increased cortical CBF from 240 to 260 ml/100g/min. Isoflurane yielded high perfusion ~100 ml/100g/min, while medetomidine yielded lower values ~50 ml/100g/min. Distinct genetic strains (C57BL/6 vs. C57BL/6- DBA/2) showed statistically significant baseline differences (p < 0.001) under identical conditions. The meta-analysis of the mouse dataset (n=343) revealed a broad distribution of cortical CBF (50–400 ml/100g/min) and identified key methodological biases: Sequence Type: PASL yielded higher average CBF (193 ml/100g/min) compared to pCASL (152 ml/100g/min), an inflationary effect persisted regardless of field strength. Field Strength: A strong bias emerged at higher fields. Adjusted means for 9.4T (219 ml/100g/min) were nearly double those of 7T (126 ml/100g/min). Covariates: While age (2–17 months) correlated slightly with increased CBF, anaesthesia remained the dominant secondary driver of variability.

Reported rodent CBF values span a wide range (50–400 ml/100g/min) that often exceeds physiological plausibility, reflecting methodological artifacts alongside intrinsic biology. Field Strength: Field strength (7T vs. 9.4T) ought not to inflate CBF estimates, this likely reflects inaccurate T1b values used for decay correction and exacerbated B0/B1 inhomogeneities (7, 8). Labelling Strategies: PASL (FAIR) often yields higher estimates than pCASL as it frequently assumes perfect inversion efficiency. In reality, efficiency is highly sensitive to coil geometry and animal positioning (9). While pCASL is more complex, it encourages necessary calibration of off-resonance effects. Anaesthesia & Respiratory State: Isoflurane is a vasodilator, therefore animals sedated with this drug will give higher CBF values than animals sedated with a vasoconstrictive agent like medetomidine (10). In unventilated animals, anaesthesia-induced respiratory depression leads to hypercapnia, which can increase CBF by 100–200%. Without blood gas monitoring, these physiological shifts are easily misidentified as disease processes. Strain: Significant baseline differences exist between rodent strains, likely due to variations in the Circle of Willis.

ASL-derived CBF is highly sensitive to both vascular physiology and modelling assumptions. Without rigorous control, apparent perfusion differences risk being misattributed to pathology. Inversion efficiency should be measured when feasible, field-strength-specific relaxation constants must be used consistently, and physiological monitoring should include ventilation or end-tidal CO2 . Just as community guidelines improved human ASL reproducibility, a similar effort in the preclinical domain would improve translational alignment. Ultimately, these results reinforce that perfusion measurements accurately reflect water mobility across vascular and tissue compartments only when physiological and methodological confounds are tightly constrained.
Sara MONTEIRO (Lisbon, Portugal, Portugal) , Isabel CHRISTIE , Dylan DUNKWU , Yolanda OHENE , Steven REYNOLDS , Noam SHEMESH , Patricia FIGUEIREDO
16:15 - 17:00 #54531 - P271 Dynamic 17O-enhanced proton MRI for quantification of water transport across the blood–cerebrospinal fluid barrier.
P271 Dynamic 17O-enhanced proton MRI for quantification of water transport across the blood–cerebrospinal fluid barrier.

The choroid plexus (CP), as the site of the blood–cerebrospinal fluid barrier (BCSFB), is a functional tissue that projects into the CSF-filled ventricles of the brain. Within the framework of the glymphatic system [1], the water exchange rate across the BCSFB has been proposed as a marker for brain waste clearance efficiency [2]. The established ASL-based method by Evans et al. [2] to quantify this exchange rate is insensitive to water kinetics prior to labeled spin arrival in the ventricles and cannot directly observe the CP compartment. A dynamic contrast-enhanced (DCE) approach that directly tracks the tracer in both compartments is therefore desirable. Since H₂¹⁷O behaves identically to normal body water, it represents an ideal tracer for this purpose. We investigate whether ¹⁷O-enhanced proton MRI can serve as such a DCE method for quantifying BCSFB water transport in mice and compare it against ASL acquired in the same animals.

Experiments were performed on a Bruker BioSpec Maxwell 9.4 T small animal MRI system with an 82 mm volume resonator and a four-element cryogenic probe. C57BL/6J mice were measured under isoflurane or medetomidine anesthesia. H₂¹⁷O diluted to 80 % with saline to physiological osmolarity was infused intravenously at 100 μL/min (4 μL/g). Dynamic RARE acquisitions were performed separately in subsequent sessions for the lateral choroid plexus and the CSF compartment of the lateral ventricles. CP imaging used TEeff = 5.2 ms with a FLAIR pulse to suppress the CSF signal at a temporal resolution of 12 s. CSF imaging used TEeff = 220 ms to suppress all surrounding tissues and a 2.4 mm slice to capture the entire lateral ventricles at 10 s per image. Signal changes were converted to ¹⁷O concentrations using compartment-specific relaxivities from phantom measurements. To obtain an arterial input function (AIF), terminal experiments with an extracorporeal shunt [3] positioned on the skull are in preparation. BCSFB-ASL measurements were performed in the same animals following [4], using TE = 220 ms and a 2.4 mm slice.

Figure 1 shows CSF ¹⁷O concentration-time curves for isoflurane (n = 2, blue) and medetomidine (n = 2, purple) anesthesia acquired in the same animals one week apart. In all measurements, a concentration peak is observed after infusion, followed by slow recovery toward a plateau, attributed to H₂¹⁷O redistribution through the CSF spaces of the brain. Medetomidine anesthesia yields elevated ¹⁷O-uptake in the ventricular CSF compared to isoflurane. Notably, initial uptake slopes are comparable between conditions. Dynamic CP signal changes of 3 averaged measurements are visible in the bottom of Figure 1, with a CNR of 9.6 ± 1.7 at the point of maximum signal drop (−4.4 %). BCSFB-ASL in 2 animals yielded water delivery rates of 25.3 ± 2.6 and 28.5 ± 3.3 mL/100g/min under isoflurane and 18.0 ± 1.9 and 10.3 ± 1.2 mL/100g/min under medetomidine, corresponding to reductions of 29 % and 64 %, respectively (see figure 2).

The dynamic CSF measurements demonstrate that ¹⁷O-enhanced proton MRI can reliably track water delivery into the ventricular space. Since tracer uptake and washout at the CP correspond to smaller signal changes than the peak, they fall below the measured CNR, currently limiting reliable quantification of ¹⁷O concentration in the CP and motivating ongoing protocol optimisation. The CP may serve as a viable ¹⁷O-DCE measurement site in larger animals or humans, where SNR conditions are more favourable and AIF sampling from the CP has already been demonstrated for Gd-based studies [5]. The ASL and ¹⁷O-CSF measurements yield contrasting results: ASL indicates reduced BCSFB water delivery under medetomidine in both animals, in line with [4]. ¹⁷O uptake shows comparable initial kinetics under both anesthetics and a higher peak concentration under medetomidine, consistent with enhanced glymphatic solute transport and CSF formation previously reported in [6, 7]. The apparent discrepancy may reflect the CBF-sensitivity inherent to ASL, whose signal scales with labeled spin delivery and is thus directly modulated by the reduced CP perfusion under α₂-adrenergic anesthesia. Additionally, ASL sensitivity is limited to water exchange on a timescale of seconds. Slower transport components may therefore go undetected by ASL but remain visible in the ¹⁷O measurements, which track tracer accumulation over several minutes.

¹⁷O-enhanced proton MRI enables direct quantification of water transport into the ventricular CSF. Kinetic modelling of the ¹⁷O concentration-time curves combined with future AIF measurements via the arterio-venous shunt will allow extraction of the BCSFB water transfer rate under different anesthesia protocols and a quantitative comparison with ASL measurements, which is currently limited by the absence of reliable AIFs.
Niklas BROEKMAN (Münster, Germany) , Lydia WACHSMUTH , Cornelius FABER
16:15 - 17:00 #54630 - P272 MRI studies of the effects of pharmacological and nutritional interventions for offspring brain neurodevelopment in mouse model of diet-driven Autism Spectrum Disorder.
P272 MRI studies of the effects of pharmacological and nutritional interventions for offspring brain neurodevelopment in mouse model of diet-driven Autism Spectrum Disorder.

Clinical and preclinical studies, highlight the impact of maternal obesity and exposure to a high-fat diet (HFD) during pregnancy and lactation on an increased risk of symptoms of autism spectrum disorder (ASD) in the offspring. However, little is known about the processes by which an inappropriate environment of intrauterine and early childhood development interferes with normal development and brain function in offspring. Moreover, search for efficient pharmacological and nutritional countermeasure is ongoing. The aim of this work was to use 1H magnetic resonance spectroscopy (MRS) and diffusion tensor imaging (DTI) with a mouse model of diet driven ASD, to find quantitative indicators of alterations in offspring’s brain structure influenced by mother exposure to HFD, and assess the pharmacological (metformine) and nutritional (probiotic - L. rhamnosus and L. helveticus) intervention in mother’s diet.

Obesity in C57BL/6J mice was induced by administering a high-fat diet (HFD) containing 45% energy from fat, while the control group received a standard control diet (CD) with 10% fat. Two additional (treatment) groups received metformine (HFDMet) and probiotics with Lactobaccillus (HFDLac). After 8 weeks on the diet, females were mated to males and then kept on CD or HFD during pregnancy and lactation. After weaning, the offspring were kept on a standard diet for the remainder of the study. Offspring were divided into 16 groups with 9 subjects in each group (age: postnatal day 28/58; gender: M/F; diet: CD/HFD/HFDLac/HFDMet). In vivo 1H MRS and ex-vivo DTI measurements in mouse brain were carried out using a Bruker Biospec 94/20 MRI scanner. STEAM pulse sequence was used to obtain 1H MRS spectra from voxels located in prefrontal cortex and hippocampus. LC Model was used for fitting absolute metabolites concentration. MatLab scripts were used for statistical analysis of the differences between animal groups. DTI imaging was performed using DtiStandard SpinEcho pulse sequence with the settings: TE/TR of 20.3/5000 ms and DELTA/delta of 10/5 ms. A DTI scheme with 30 diffusion sampling directions at a b-value of 2297.5 s/mm² was used to obtain images with an in plane resolution/layer thickness of 0.1/0.2 mm, scaled to an 3D isotropic resolution of 0.1 mm. DSI Studio (http://dsi-studio.labsolver.org/) was used to calculate diffusion anisotropy indexes and perform tractographic analysis.

Concentrations of up to 15 metabolites in prefrontal cortex and hippocampus were obtained for control and high fat diet group as well as groups with diet intervention (probiotics) and anti-diabetic drug (metformine) interventions. - Most statistically significant differences were found between younger and older offspring (i.e. 28/58 postnatal weeks old). - Significant differences were shown for 6 metabolites in the prefrontal cortex: GPC+PCh, Ins, Glu+Gln, MM09, MM09+Lip09, Tau, while for 9 metabolites in the hippocampus: Glu, NAA, NAA+NAAG, MM14+Lip13a+Lip13b+MM12, GSH, Ins, GPC+PCh, MM14, and MM17. - Inositol and Taurine were among the most important metabolites showing differences between groups illustrating effects of the probiotic supplements in diet or metformine applications (see Fig. 1 for example). Regarding DTI indexes, the representative results for FA, for male animals at the age of 58 weeks are shown in Fig. 2, for CD and HFD groups. In cases of pharmacological and diet interventions, the median values of FA has intermediate values.

1H MRS: The results obtained show that there are significant, statistically significant differences in the concentration of certain metabolites in the brain of younger and older offsprings (measurements on days 28 and 58). Trend toward dependence of the effects on sex, known from e.g. (Ferreira et. al. Metabolites, 2022), was also observed, however without statistical significance. Fractional Anisotropy: The result of the intergroup difference in 6 out of 9 structures examined was statistically significant (p less than 0.05), which is consistent with the observations in human infants, as know from scientific literature. After birth, general brain hypertrophy is observed at the early childhood stage, which is confirmed by magnetic resonance imaging in cohort of longitudinally examined infants aged 6 to 24 months (Shen, M. D., et al. 2013).

In 1H MRS results, statistically significant differences in the brain metabolism of younger and older offspring (measurements on postnatal days 28 and 58) were found for 6 metabolites in the prefrontal cortex, while for 9 metabolites in hippocampus. No statistically significant differences between metabolites level of the corresponding control and research groups were found. In DTI results, statistically significant differences in values of Fractional Anisotropy were found between offspring’s brains, depending on the mother’s diet during pregnancy. FA values show consistent effects of pharmacological and diet interventions for brain structural development.
Władysław WĘGLARZ (Kraków, Poland) , Krzysztof JASIŃSKI , Katarzyna BYK , Katarzyna KALITA , Dawid GAWLIŃSKI
16:15 - 17:00 #54673 - P273 Body-weight loss after bariatric surgery induces DKI cerebral changes in mice.
P273 Body-weight loss after bariatric surgery induces DKI cerebral changes in mice.

Obesity is a chronic metabolic disease associated with peripheral inflammation and structural alterations in the central nervous system. Diet-induced obesity promotes neuroinflammatory responses, including microgliosis, astrogliosis or blood-brain barrier dysfunction1,2. These processes affect regions involved in energy balance, memory and reward, such as the hypothalamus (Hyp), hippocampus (Hipp) and nucleus accumbens (NAc)3. Bariatric surgery (BS) is one of the most effective interventions for sustained weight loss. Beyond reducing body weight (BW), it induces major changes in metabolism, gut microbiota, and brain function⁴. However, whether BS can reverse or modify obesity-related brain microstructural alterations remains unclear. Here, we assessed longitudinal brain microstructural changes after BS in a murine model of obesity using diffusion kurtosis imaging (DKI), which provides quantitative markers sensitive to tissue integrity, microstructural complexity, and neuroinflammatory processes.

22 C57BL/6 mice were fed with a high-fat, high-sugar diet. After this period, mice were assigned to either a BS group, in which approximately 80% of the stomach was resected, or a Sham group. Following surgery, both groups were maintained on a liquid diet for 1 week and subsequently maintained on a standard chow diet for the remaining 6 weeks. BW and glucose levels were monitored before and after surgery. MRI acquisitions were performed on a Bruker Biospec 7T system at three time points: before surgery, 3 weeks, and 6 weeks post-surgery. The MRI protocol included a T2-weighted anatomical reference and a diffusion MRI (dMRI) acquisition (30 directions, TR/TE= 3000/37.56 ms, δ/Δ= 4/25ms, Mtx= 128×128, slice thickness= 1.25 mm, b-values= 800 and 2500µm2/s). dMRI images were preprocessed using Path2self denoising and Gibbs ringing correction using Resomapper5. Statistical analyses were performed using linear mixed-effects models to evaluate the effects of time (Pre/Post3w/Post6w), Type (BS/Sham group), and BW on DKI parameters. Based on individual longitudinal trajectory patterns, analyses were divided into three pairwise comparisons: Pre – Post3w, Post3w – Post6w, and Pre – Post6w.

Following surgery, BW showed a significant Time: Type interaction (p < 0.01), with BS group exhibiting a greater reduction in BW than the Sham group (p < 0.001). By the Post3w, animals in the BS group had lost more than twice as much weight as those in the Sham group (Figure 1). DKI analysis revealed region-specific and time-dependent microstructural alterations. In the Hipp, BW had a significant effect on radial kurtosis (RK) (p<0.05). Specifically, higher BW was associated with higher RK values in both groups (Figure 2A). Mean kurtosis (MK) changed significantly with Time (p<0.05) from Pre to Post6w, decreasing after surgery in both groups (Figure 2B). In the Hyp, radial diffusivity (RD) and RK showed significant changes with Time between Post3w and Post6w after surgery (p<0.001 and p<0.01, respectively), with both parameters decreasing over time in both groups (Figure 3). Finally, in the NAc, AK showed a significant effect of Type from Pre to Post3w (p < 0.05). At Post3w, mean AK values were higher in the Sham group than in the BS group.

Weight loss after surgery was associated with detectable brain microstructural changes measured by DKI. In the Hipp, BW showed a significant effect on RK, which may reflect increased tissue complexity related to gliosis, as obesity has been linked to hippocampal neuroinflammation, including microglial activation and astrogliosis6. In addition, MK decreased over time in both groups, suggesting reduction in diffusion heterogeneity, possibly associated with reduced inflammatory-related restriction7. In the Hyp, RD and RK decreased from Post3w to Post6w in both groups, possibly reflecting partial recovery from peak Post3w alterations rather than a BS-specific effect, as no further BW loss occurred. Therefore, the observed changes may reflect partial recovery from the marked Post3w alterations rather than a BS-specific effect. Finally, in the NAc, AK was higher in Sham animals than in the BS group at Post3w. Given the role of this region in reward and food-motivated behavior, this finding may indicate persistent obesity-related microstructural alterations in Sham animals.

BS induced substantial weight loss in a murine model of obesity and was associated with changes in DKI parameters across key brain regions. However, Sham animals also exhibited BW reduction and similar DKI rearrangements, suggesting that these microstructural changes may be primarily mediated by weight loss rather than by BS itself, or at least making it difficult to disentangle the specific surgical effect from postoperative diet reversal. Further validation through histological and spectroscopic analyses is required to better characterize the glial and metabolic mechanisms underlying these changes; both analyses are currently ongoing.
Adriana FERREIRO (Madrid, Spain) , Maya HOLGADO , Raquel GONZÁLEZ-ALDAY , Pilar LÓPEZ-LARRUBIA , Blanca LIZARBE
16:15 - 17:00 #54558 - P274 Evaluating Sex Differences in Neuroinflammation via Multiparametric MRI in a Mouse Model of Diffuse TBI.
P274 Evaluating Sex Differences in Neuroinflammation via Multiparametric MRI in a Mouse Model of Diffuse TBI.

Traumatic Brain Injury (TBI) represents a major public health issue with far-reaching consequences not only in terms of mortality rates but also long-term disability [1]. It is a complex neurological condition that triggers a cascade of biological responses affecting brain structure and function, involving neuroinflammation. Multiparametric Magnetic Resonance Imaging (mp-MRI) provides valuable insights into the progression of neuroinflammation and can be applied to non-invasive assessment of structural and functional changes in the brain after TBI [2, 3]. The aim of this study is to detect and monitor neuroinflammation in a diffuse TBI mouse model using mp-MRI and to assess the effect of sex in this model.

The diffuse TBI model employed was adapted from [4]. A 41g steel weight was dropped from 40cm through a tube, impacting a stainless-steel disc fixed to the skull. Post-impact, the disc was removed and the skull was examined to exclude animals with fractures. All procedures were performed under general inhalatory anesthesia with isoflurane. Adult C57BL/6 mice (n=7 per sex) were subjected to this protocol and mp-MRI studies were conducted in a Bruker Biospec 7T system at 4 timepoints: basal state (days before TBI), immediately post-TBI, 24h and 48h after. The imaging protocol included diffusion tensor imaging (DTI), T2 and T2* relaxometry. In the first two timepoints, dynamic contrast enhancement (DCE) acquisitions were also performed to assess brain-blood-barrier (BBB) integrity. Mice were sacrificed via intracardiac perfusion for future immunofluorescence assays. DTI and relaxometry maps were processed using Resomapper [5], and different regions were measured using ImageJ: cortex (CTX), corpus callosum (CC), hipocampus (HPC) and thalamus (TH). Statistical analysis employed linear mixed effects (LME) models in R. DCE studies were analysed with DCE@urLab software [6] to obtain relative contrast enhancement (RCE) curves of a whole brain slice.

Even though area under the curve (AUC) comparisons between RCE curves of basal state versus TBI timepoint were not statistically significant, the latter presented a tendency of higher RCE values (see Fig. 1). Regarding the rest of parametric maps, statistically significant differences between timepoints were found only in DTI, particularly in mean and axial diffusivity (MD and AD). Both showed a significant effect of the interaction of sex and timepoint (p<0.05 in MD and p<0.01 in AD). Post-hoc comparisons revealed that differences between timepoints were only present in male mice, where an increase of diffusivity between TBI and 24h was observed followed by a decrease between 24h and 48h consistent across brain areas (see Fig. 2 and Fig. 3).

The apparently higher RCE shown in the curves of the TBI timepoint might reflect the expected BBB disruption after the trauma [7, 8]. This model reproduces a diffuse injury using a moderate impact in order to ensure mice survival. Therefore, the BBB disruption in this model is subtle and difficult to detect using DCE, explaining the small differences and high variability between subjects. Regarding the DTI results, the observations in males are consistent with the occurrence of vasogenic edema 24h after the impact, caused by the BBB leakage, counteracted at 48h hours by the immune system response, causing cytotoxic edema, where cells like microglia and astrocytes swell, and therefore restrict diffusion. However, in females, these changes are not detected, even though RCE curves did not show apparent differences between sexes, suggesting the BBB disruption similarly happens in both, even though barely detectable. One hypothesis could be that cytotoxic response occurs faster in females, masking or counteracting the vasogenic effect. Sex-differential outcomes have already been described in human studies of TBI [9], due to many confounding factors, including the type and severity of injuries and other social factors, as well as the cellular and molecular response. While some human studies suggest better outcomes for males, preclinical studies with less confounding factors report the opposite [10], which could be in line with our observations. Ex-vivo samples are currently being analyzed with immunofluorescence to visualize microglia and astrocytes in order to confirm whether the cytotoxic reaction is happening in the same way in females and males, to better elucidate the causes of this difference.

This study characterizes a diffuse TBI model in mice using mp-MRI, which allows the detection of BBB subtle disruption and vasogenic and cytotoxic events, while highlighting the importance of the effect of sex in this model, given that the response of males and females to the same type of impact seems to differ. Even though some work is still in progress to better elucidate the MRI results using immunofluorescence assays, this work represents a framework to evaluate therapeutic strategies for TBI and to better understand its effects on the brain.
Raquel GONZÁLEZ-ALDAY (Madrid, Spain) , Adrián PINTO , Darwin CÓRDOVA-ASCURRA , Nuria ARIAS-RAMOS , Pilar LÓPEZ-LARRUBIA
16:15 - 17:00 #54600 - P275 AI-Driven Multiparametric MRI for Early Prediction of Immunotherapy Response in Preclinical Melanoma.
P275 AI-Driven Multiparametric MRI for Early Prediction of Immunotherapy Response in Preclinical Melanoma.

Metastatic melanoma remains difficult to treat despite immune checkpoint inhibitors, for which RECIST-based response assessment is limited [1]. Multiparametric MRI enables non-invasive assessment of tumor heterogeneity and the tumor microenvironment [2]. This study evaluates whether AI-driven multiparametric MRI can predict early immunotherapy (IT) response in a preclinical melanoma model.

Male C57BL/6 mice (n = 68; 25 responders, 43 non-responders) were inoculated with YUMMER1.7 melanoma cells and treated with anti–PD-1 immunotherapy over two cycles [3]. Tumor growth was monitored by calipers, and MRI was acquired at before (day 0) and after one cycle of IT (day 5). Response labels were defined based on tumor growth up to day 12. Imaging was performed on a 11.7T Bruker system using T2-weighted anatomical imaging, diffusion tensor imaging for cellularity (12 directions; b = 700–2500 s/mm²), T1/T2* oxygen proxy mapping, and ¹H-MRS for metabolic assessment. Tumors were segmented using a U-Net model, and ADC maps were registered to T2-weighted images [4]. A radiomics pipeline used whole-tumor ROIs. ADC features (mean, median, SD, skewness, kurtosis, entropy, 10th percentile) were extracted. Statistical comparisons between responders and non-responders were performed at day 0 and day 5, focusing on mean, median, skewness, and kurtosis. Three feature strategies were used to assess the statistical models: (1) univariate normalized ADC features; (2) combined Day 0/Day 5 features with relative changes; and (3) a four-feature signature consisting of mean, median, skewness, and kurtosis. Logistic regression and random forest were evaluated using 3-fold cross-validation. A Siamese neural network processed paired ADC volumes (Day 0 vs. Day 5) using CNN-based feature extraction and fully connected layers [5,6]. For the AI model only, spatial analysis included whole tumor, 30% shell, 50% shell, and core regions. The shell corresponds to peripheral intra-tumoral tissue, and the core to the central region.

In an intermediate analysis considering ADC data, comparisons between responsive and non-responsive tumors showed mostly non-significant differences between classic ADC metrics. In the normalized analysis, Kruskal–Wallis tests found no significant group effects for mean (p = 0.2503), median (p = 0.2324), skewness (p = 0.4739), or kurtosis (p = 0.8141), indicating no separation between groups. In the non-normalized analysis, two-way repeated measures ANOVA showed no significant group-by-time interactions for mean (p = 0.3575), median (p = 0.3171), skewness (p = 0.9905), or kurtosis (p = 0.5093), and no time effects for any feature. There were also no significant group effects for mean (p = 0.5514), median (p = 0.6045), or skewness (p = 0.1377), although ADC kurtosis showed a significant group effect (p = 0.0251), indicating a baseline difference in distribution shape between response groups. For statistical models, logistic regression showed suboptimal performance (accuracy 0.536–0.639, AUC 0.500–0.568), with consistently low sensitivity and high specificity (up to 0.955), suggesting strong class imbalance effects and limited detection of positive cases. Random forest demonstrated improved and more balanced performance (accuracy 0.456–0.588, AUC 0.492–0.675), with better sensitivity and F1-scores. The best discrimination was achieved using normalized ADC-derived features, particularly entropy and 10th percentile ADC (AUC 0.671–0.675, F1 up to 0.535). However, performance remained feature-dependent and unstable across representations, indicating moderate but not robust predictive power overall. Deep learning performed better overall. Whole-tumor Siamese models achieved 76.3% accuracy. Spatial modeling (AI only) further improved performance: 30% shell reached 77.2% accuracy, while 50% shell achieved 80.4% accuracy, 73.6% sensitivity, 87.6% specificity, and 78.5% F1-score. Core regions were least informative.

Whole-tumor ADC analysis and statistical models showed limited ability to distinguish responders from non-responders. In contrast, the Siamese network captured temporal changes between pre- and post-treatment scans. Within the AI framework, spatial heterogeneity improved performance, with peripheral regions outperforming whole-tumor and core-based analyses. This suggests early diffusion changes are spatially heterogeneous and predominantly located at the tumor periphery.

Conventional ADC-based radiomics and statistical learning showed limited and inconsistent performance for early response prediction. In contrast, a Siamese deep learning framework using paired ADC maps improved classification by leveraging longitudinal changes. Additional gains were observed when spatial tumor heterogeneity was incorporated, with peripheral regions providing more information than whole-tumor or core compartments. Overall, both temporal and spatial imaging features contribute to early immunotherapy response assessment.
Madeleine EL ASSAL (Brussels, Belgium) , Lionel MIGNION , Nicolas MICHOUX , John LEE , Nicolas JOUDIOU , Bénédicte JORDAN
16:15 - 17:00 #54315 - P276 Two immunometabolic worlds in high-grade gliomas: interaction between immune checkpoints and tumor metabolism.
P276 Two immunometabolic worlds in high-grade gliomas: interaction between immune checkpoints and tumor metabolism.

High-grade gliomas are currently the most lethal brain tumors. Those harboring the R132H mutation in isocitrate dehydrogenase 1 (IDH1) show a better prognosis in clinical settings. Nevertheless, standard treatments consisting in resection surgery followed by chemo or radiotherpay fail to significantly extend patients’ survival, highlighting an urgent need to develop new therapeutic strategies. Immunotherapies based on immune checkpoint inhibition, such as those targeting PD-L1, have shown promising results in other tumor types like lung cancer or melanoma, but they have not been effective in gliomas. We hypothesize that one a potential contributing factor for this is the aberrant tumor metabolism that allows gliomas to reprogram in order to scape the immune atack. In this work, we aim to study the relationship between immunorresistance and glioma tumor metabolism.

To address this, we studied orthotopic murine models of high-grade glioma comprising IDH1 wild-type (GL261-WT) glioblastoma and IDH1 R132H-mutant glioma (GL261-mIDH). We defined three experimental groups: Control (saline or IgG2b), Immunotherapy (anti–PD-L1 antibody), and Metabolism (AGI-5198, a mutant IDH1–targeted metabolic modulator). Treatment was administered intraperitoneally (i.p.) from day 7 post-surgery until the day of sacrifice. Tumor growth was monitored using T1- and T2- weighted MRI images with contrast in a 7T Bruker Biospec. Additionally, diffusion tensor imaging (DTI) (30 directions, TR/TE = 3000/38.10 ms, δ/Δ = 4/25 ms, matrix = 100×100, slice thickness = 0.8 mm, b-values = 800 μm²/s and 2500 μm²/s) was performed to assess changes in tumor structure and microenvironment.

We observed a significant reduction in tumor growth in GL261-mIDH compared to GL261-WT, successfully recapitulating clinical observations (Figure 1A). There was a clear difference in tumor response to treatment. GL261-WT did not respond to AGI-5198, but showed significant reduction in tumor volume with immunotherapy—this being the first time such a strong effect has been observed in a glioblastoma model (Figure 1A). In vivo monitoring revealed a significant increase in mean diffusivity (MD), radial diffusivity (RD), and axial diffusivity (AD), indicating that anti–PD-L1 therapy induces structural changes in the tumor (Figure 1B). These changes could be indicative of cell death and/or tumor microenvironment changes. GL261-mIDH depicted the opposite reaction, with no response to anti-PD-L1 but showing a significant reduction in tumor size when treated with AGI-5198 (Figure 1A). Finally, a marked decrease in fractional anisotropy (FA) values was detected in this mutant model following treatment with the metabolic modulator, indicating loss of tumor structure and reduced cellularity (Figure 1C).

Overall, our findings support previous preclinical evidence demonstrating that immune checkpoint blockade can induce robust responses in glioma models (1). Importantly, we extend these observations by showing that therapeutic efficacy is strongly influenced by tumor genetic profile. In line with prior studies linking IDH1 mutations to distinct metabolic and immune microenvironments (2), our results indicate that targeting metabolism or immune checkpoints selectively impacts different glioma subtypes.

Together, these findings support a stratified therapeutic approach combining immunotherapy and metabolic modulation based on tumor genotype, trying to reach a synergistic effect on tumor growth and function. Furthermore, multiparametric MRI enabled non-invasive monitoring of tumor progression and treatment response, providing additional insight into tumor behavior in vivo.
Paula CARRETERO NAVARRO (Madrid, Spain) , Rebeca Cristina NESTARES DE KOK , Pilar LÓPEZ LARRUBIA , Jesús PACHECO TORRES
16:15 - 17:00 #53604 - P277 MRI Delta Radiomics to Track Early Changes in Tumor Following Radiation: Application in a Glioblastoma Mouse Model.
P277 MRI Delta Radiomics to Track Early Changes in Tumor Following Radiation: Application in a Glioblastoma Mouse Model.

Glioblastoma (GBM) is the most aggressive primary brain tumour in adults, with a median survival of approximately 15 months and a five-year survival rate of around 5% [1]. Despite multimodal therapy, surgery, radiotherapy, and chemotherapy, outcomes remain poor, largely due to intratumoral heterogeneity, which limits accurate assessment of treatment response [2]. Radiomics enables quantitative, high-dimensional feature extraction from MRI, providing non-invasive insights into tumour biology [3]. Delta radiomics extends this approach longitudinally by quantifying changes in features across serial imaging time points, providing a dynamic measure of treatment-induced tumour evolution [4]. This study investigates whether MRI-derived delta radiomic features can detect early radiation-induced changes in a preclinical GBM model and support machine learning-based classification of treatment response.

Fifty female CD1 nude mice received intracranial injection of G7 glioblastoma cells and were allocated to irradiated (IR, n=42) and non-irradiated control (non-IR, n=8) groups. The IR group received 6 Gy in three daily 2 Gy fractions via the Small Animal Radiation Research Platform (SARRP). T2-weighted MRI was performed at 7T at three time points: baseline (week 11), week 12, and week 13, Fig. 1. Tumour regions of interest were manually segmented using 3D Slicer (v5.2.1) by two experienced observers. A total of 107 IBSI-compliant radiomic features were extracted per scan (14 shapes, 18 histograms, and 75 textures). Features with an inter-observer intraclass correlation coefficient ICC ≥0.8 (n=55) were retained, Fig 2. Delta features were computed between consecutive time points and evaluated using Wilcoxon signed-rank tests (p<0.05). Support vector machine (SVM) and logistic regression classifiers were trained on PCA-reduced delta features (95% variance retained) using a 70/30 train-test split.

Delta radiomic features demonstrated highly significant temporal changes in the IR group but not in non-IR controls at any time point. For IR week 11 vs. week 12: 90% of shape, 81.8% of histogram, and 97.3% of texture features reached significance. For IR week 12 vs. week 13: 90% of shape, 72.7% of histogram, and 81% of texture features were significant, Fig 3. SVM achieved testing accuracies of 74% and 78% with AUCs of 0.83 and 0.82 across the two intervals, respectively. Logistic regression yielded AUCs of 0.96 and 0.70, Table 1.

These results confirm that MRI delta radiomics detects subtle, radiation-induced microstructural alterations preceding visible changes in tumour size, a critical limitation of conventional imaging response criteria. Decreased voxel intensity uniformity and increased heterogeneity in the IR group are consistent with radiation-induced necrosis and reduced viable cell density, corroborating established radiomic signatures in GBM [5]. A key methodological strength was ICC-based feature filtering before machine learning, which reduced instability and enhanced model reliability. Limitations include the small non-IR cohort (n=8), use of immunodeficient mice precluding immune-mediated radiation effects, and whole-brain irradiation differing from focal clinical protocols. Standardisation of delta radiomics pipelines and multi-centre validation remain prerequisites for clinical translation [4].

MRI delta radiomics provides a robust, non-invasive framework for monitoring early GBM response to radiation. Machine learning classifiers trained on ICC-filtered delta features achieved reliable discrimination across serial time points. Future validation in larger, immunocompetent models at clinical field strengths is warranted to advance translation into personalised GBM treatment monitoring.
Abdulrahman QAISI (RIYADH, Saudi Arabia) , Mohammed ALSHUHRI , Haitham AL-MUBARAK
16:15 - 17:00 #54499 - P278 SB28: preliminary MRI/MRS characterization of a novel glioblastoma preclinical model.
P278 SB28: preliminary MRI/MRS characterization of a novel glioblastoma preclinical model.

The development of an ideal preclinical model for glioblastoma (GB) remains a major hurdle in the field, and the SB28 model has emerged as a promising candidate to address this gap. Currently, most GB models fail to reproduce the low immunogenicity, limited neo-antigen load, and complex tumor microenvironment (TME) interactions characteristic of human GB, leading to poor clinical translation [1]. SB28 is highly tumorigenic, has a low mutational burden, low immunogenicity, exhibits limited T cell infiltration and abundant macrophage and microglia infiltration [2], and shows human-like therapeutic resistance to temozolomide (TMZ) and immune checkpoint inhibitors, making it a valuable platform for therapeutic research [3]. We aimed to characterize the SB28 preclinical model noninvasively through MRI/MRSI approaches to better understand their growth dynamics, as well as its morphological and metabolic features.

A total of 24 female C57BL/6 mice were stereotaxically implanted with 10,000 SB28 cells [4]. For survival studies, n=14 animals were used (7 untreated controls and 7 TMZ-treated). TMZ (60 mg/kg) was administered every six days starting at day 11 post inoculation (p.i.) following an immune-enhancing metronomic schedule [5]. MRI/MRS studies were acquired at 7T. MRI was acquired along tumor evolution starting at day 11 p.i. until endpoint (RARE sequence: TR/TE 4200/36ms) or euthanization point[LM1.1][AC1.2]. In chosen individuals, diffusion tensor imaging (DTI) was also acquired (TR/TE 1.5s/22ms, with 3 orthogonal diffusion weightings at b =0, 100 and 900 s/mm2), as well as single voxel (SV) MR spectroscopy in a 2-3mm isotropic voxel centered in tumor zone (TR/TE 2500/12ms). The remaining n=10 individuals did not meet endpoint since they were selected for histopathological analyses and microenvironment studies which are currently being expanded to correlate imaging features with tissue features.

Survival and tumor progression did not differ significantly between treated and untreated animals (23.7 ± 2.6 days p.i. in control mice vs 23.7 ± 1.6 days in treated mice). Tumor follow-up showed rapid expansion, with MRI revealing a distinctive hypointense ring on T2-weighted images, mirrored by an hypointense rim on ADC maps. MRI features also included hyperintense T2-weighted and increased ADC signal in adjacent brain tissue. Preliminary findings from immunohistochemistry staining from untreated mice samples showed a predominance of M2 over M1 macrophage infiltration, low PD-L1 expression, and presence of cells compatible with stem phenotype (ca. 50%). Tumor tissue features also suggested vascular proliferation, consistent with the hypointense rim on ADC maps. Finally, MR spectroscopy identified elevated lactate/mobile lipids, and interestingly, a discrete signal compatible with polyunsaturated fatty acids (PUFAs) was also observed in untreated mice.

Reported survival and tumor progression confirmed the limited therapeutic efficacy of TMZ in SB28 tumors [2]. MRI hypointensity features in T2-weighted and ADC were consistent with vascular proliferation, hemorrhage, and hemosiderin deposition, which are hallmarks of invasive GB, while increased signals in peritumoral regions suggested edema beyond tumor margins. Elevated lactate/mobile lipids reflected possible hypoxia, necrosis, membrane breakdown and higher glioma grade [6]. Interestingly, PUFAs signal, previously associated with TMZ-responsive GL261 tumors, were detected in untreated SB28. PUFAs have been linked to high EGFR activity in GB [7] and M2 macrophage infiltration [8], both associated with poor prognosis in human GB and previously observed by us in SB28, reinforcing its aggressive, therapy-resistant phenotype.

Overall, SB28 shows strong promise as a clinically relevant model, recapitulating the resistance, aggressiveness and overall poor prognosis of human GB, and reveals potential MRI/MRS based prognostic markers that could be translatable to clinics.
Lídia MONTES-RUIZ (Barcelona, Spain) , Marta MULERO-ACEVEDO , Ana AZAUSTRE-GARCÍA , Silvia LOPE-PIEDRAFITA , Miquel CABAÑAS EGAÑA , Carles ARÚS , Ana Paula CANDIOTA
16:15 - 17:00 #54395 - P279 Unraveling In Vivo Metabolic Heterogeneity in Preclinical Glioblastoma Murine Models via ¹H MRS.
P279 Unraveling In Vivo Metabolic Heterogeneity in Preclinical Glioblastoma Murine Models via ¹H MRS.

Magnetic resonance spectroscopy and spectroscopic imaging (¹H MRS/MRSI) provide non invasive metabolic information complementing conventional MRI. These techniques are used to identify biomarkers for glioblastoma (GB) grading and treatment response in both clinical and preclinical studies [1]. However, interpreting metabolic profiles is challenging due to tumour heterogeneity, microenvironmental influences, and variability in spectral quality. Preclinical GB models allow detailed investigation of tumour metabolism with the added benefit of molecular validation, but metabolic diversity can affect downstream analyses. Previously, a machine learning model trained on MRSI data from GL261 [2] failed to generalise to other models for classification tasks (unpublished data), suggesting that baseline metabolic differences may confound classification. To address this, we compared MRS profiles from 3 commonly used GB models (CT 2A, SB28, and GL261) to identify biological sources of metabolic variability that may also influence future therapeutic responses.

Tumours were generated in C57BL/6 mice, stereotaxically implanted with 100,000 (CT2A, GL261) or 10,000 (SB28) cells as described in [3]. MRI/MRS studies were acquired at 7T along tumor evolution, starting at day 11 p.i. until endpoint (RARE sequence: TR/TE 4200/36ms). Single voxel MRS was acquired from a 2-3 mm isotropic voxel centered in tumor or in contralateral zone (TR/TE 2500/12ms). Spectra were processed and visually inspected to identify key metabolite related peaks. Metabolic patterns were qualitatively compared across tumour models and against their respective contralateral spectra to characterise inter model variability.

Spectra from all GB models showed typical glioma-associated features, including increased choline and reduced N-acetylaspartate (NAA), but exhibited distinct metabolic profiles. CT-2A tumours displayed elevated choline, consistent with increased membrane turnover and proliferation [4], in agreement with previous findings reported by Riva et al. [3]. SB28 tumours showed strong mobile lipid and PUFA signals, together with absence of alanine, suggesting hypoxic/necrotic regions and a glycolytic shift [5,6]. GL261 tumours exhibited higher glutamine/glutamate (Glx) and M-Ino+Gly levels, reflecting enhanced glutaminolysis and oxidative metabolism in better-perfused tissue [7,8].

Our findings suggest that CT-2A, SB28 and GL261 models occupy distinct metabolic states - proliferative, hypoxic/lipid-rich and oxidative, respectively - despite representing the same tumour type. This metabolic heterogeneity may contribute to variability in MRS-based tissue characterization and influence therapeutic response, highlighting the importance of considering model-specific metabolism when interpreting spectroscopic biomarkers. Ongoing high-resolution MR studies in tumour cell cultures aim to determine whether these differences are intrinsic to tumour cells or influenced by the tumour microenvironment.

Distinct metabolic phenotypes were identified across CT-2A, SB28 and GL261 glioblastoma models using in vivo ¹H-MRS. These differences highlight metabolic heterogeneity as a key factor influencing spectroscopic characterization and support the need for model-specific interpretation of MRS-based biomarkers in preclinical GBM studies.
Ana AZAUSTRE GARCIA (Barcelona, Spain) , Marta MULERO ACEVEDO , Lidia MONTES RUIZ , Miquel CABAÑAS EGAÑA , Carles ARUS , Silvia LOPE PIEDRAFITA , Ana Paula CANDIOTA
16:15 - 17:00 #53677 - P280 Indirect Quantification of 10B Using 1H Relaxometry: Curve-Fitting Analysis in Dual-Component Phantoms at 11.74 T.
P280 Indirect Quantification of 10B Using 1H Relaxometry: Curve-Fitting Analysis in Dual-Component Phantoms at 11.74 T.

Boron-10 (10B) is the active isotope used in boron neutron capture therapy (BNCT); therefore, accurate quantification of its concentration and spatial distribution is essential. Direct MRI of 10B is challenging due to its low sensitivity [1]. Ultra-high-field MRI systems (e.g., 11.74 T) provide increased signal-to-noise ratio and enable improved characterization of contrast mechanisms relevant to BNCT. In this study, we evaluate curve-fitting approaches to estimate boron concentration indirectly using proton (1H) imaging of phantoms containing boronophenylalanine (BPA), a 10B delivery agent, at different concentrations. T2* relaxation parameters were derived to establish relationships between relaxation behavior and BPA concentration.

Gradient-echo images were acquired on an 11.74 T MRI system using flip angles of 30° and 60°, repetition time (TR) of 1000 ms, five slices, matrix size 256×512, and echo times (TE) of 4.8, 6, and 10 ms. Due to non-uniform transmit |B1|-field distribution, a flip-angle map was generated and used for signal normalization prior to T2* estimation. A phantom consisting of 15 containers with water–BPA mixtures at different concentrations (ppm) was prepared. T2* maps were computed using curve fitting, and regions corresponding to each container were segmented to extract average values. Because BPA concentrations were not uniformly distributed, logarithmic scaling was applied to improve fitting efficiency. The following models were evaluated: (i) rational fitting between T2* and BPA, (ii) linear fitting between T2* and log(BPA), (iii) exponential fitting between R2*=1/T2*and BPA, (iv) rational fitting between R2*and log(BPA), (v) exponential fitting between log(T2*) and BPA, and (vi) third-degree polynomial fitting between log(T2*) and log(BPA).

A representative image is shown in Fig. 1a, and the corresponding T2* fitting across phantoms is plotted in Fig. 1b. A dependence on T2* and BPA concentration can be observed. The curve fitting methods tested in this work are shown in Fig 2. Direct fitting between T2* and BPA yielded R^2=0.60, with limited discrimination at higher concentrations (≥100 ppm). Applying logarithmic scaling improved performance: fitting R2* versus BPA achieved R^2=0.84, while fitting in log–log space further improved the correlation to R^2=0.88. Logarithmic transformation of T2* effectively inverted the trend, improving separability and consistency with previous findings [2]. BPA concentration maps were reconstructed using selected models (Fig. 3). Root-mean-square error (RMSE) analysis showed reduced error for logarithmic models compared to direct T2* fitting, after back-transformation to ppm.

This study demonstrates the feasibility of indirectly estimating BPA concentration using proton-based T2* mapping at 11.74 T. The observed non-linear relationship indicates that the system does not follow a simple relaxation model, likely due to susceptibility and microstructural effects. Logarithmic transformations improve model stability and fitting accuracy, particularly at higher concentrations. Although evaluated in simple phantoms, this approach shows potential for BNCT-related imaging, complementing direct 10B detection methods.

Indirect estimation of BPA concentration using 1H T2* measurements at ultra-high field is feasible. Logarithmic scaling improves fitting performance and quantitative accuracy. Despite non-linear behavior, proton MRI demonstrates sensitivity to BPA concentration, supporting its potential application in BNCT imaging.
Daniel HERNANDEZ (Incheon, Republic of Korea) , Tawwoo NAM , Jun-Young CHUNG , Kyoung-Nam KIM
16:15 - 17:00 #54117 - P281 Reproducibility of transverse relaxation times of metabolites at ultra-high field.
P281 Reproducibility of transverse relaxation times of metabolites at ultra-high field.

Proton magnetic resonance spectroscopy (¹H-MRS) enables non-invasive quantification of brain metabolite concentrations in vivo [1]. Accurate metabolic quantification requires accounting for transverse relaxation times (T₂), whereby the measured MRS signal undergoes exponential decay as a function of echo time (TE) [2], reflecting both metabolite concentration and T₂-dependent signal attenuation [3]. Characterization of metabolite T₂ relaxation times is fundamental both for reliable quantification and for probing underlying physiological and pathological processes [4]. Alterations in T₂ have been observed in conditions such as schizophrenia, where shortened choline-containing compounds (tCho) T₂ has been linked to neuronal hypofunction and macromolecular loss [5]. Similarly, T₂s of key metabolites have been shown to vary with normal aging, underscoring the need for age-specific T₂ correction to maintain quantification accuracy [6]. Despite the growing interest in metabolite T₂s as biomarkers, little is known about the reproducibility of metabolite T₂ measurements. This study aims to measure the T₂s of metabolites at 7T and their reproducibility. Moreover, we report inter-subject coefficients of variance (CV), repeatability coefficient (CR), and power estimates for each of the metabolites of interests, in order to provide useful information to plan clinical studies.

In-vivo 1H-MR spectra were acquired at 7 T (Siemens Terra scanner) using a 1Tx/32Rx head coil with STEAM (TM/TR = 28.82/5500 ms) sequence [7]. Data were acquired at six different TEs (5.12, 19, 32.5, 46, 60, 90 ms: 64 averages per TE). Spectroscopy voxel was placed in the occipital lobe of 5 HVs (25 ± 3 years; 1 female), each scanned 3 times (Figure 1). B0 field inhomogeneity was optimized performing first- and second-order shimming with (FAST(EST)MAP [8]. Spectra were fitted with LCModel [9], using a simulated basis set generated with in-house written algorithms in MATLAB. Measured macromolecules for each TE were also included in the basis set. T₂s were computed for each metabolite by fitting its signal decay as a function of TE with a monoexponential function (Smetab.(TE) = Smetab.(0 ms) x exp(-TE/T₂) in MATLAB. tCr T₂s were separately reported for the two different singlet components [N(CH3), 2CH2 group], and NAA T₂s were separately reported for singlet (CH3 group; acetyl methyl resonances of NAA - sNAA) and for their J-coupled component (CH2 group; aspartyl resonances of NAA - mNAA). Also, myo-inositol (mI) and Glycine (Gly) were measured together (mI+Gly). For each metabolite T₂, the CV across subjects was computed as the standard deviation divided by the mean and expressed as a percentage. Also, for each metabolite T₂, a one-way ANOVA was performed to evaluate the within-subject standard deviation (SDw) across the three visits. SDws were then used to calculate the CR, (CR = 1.96 × √2 × SDw; within the 95% confidence interval) [10]. Power calculations were performed for both longitudinal and cross-sectional settings using the SDw and between-subject SD (SDb) respectively, to determine the minimum sample size required to detect a 10% change in metabolite T₂ at 80% statistical power. MRS voxel composition was computed from T1-weighted images [11].

Excellent spectral quality was achieved across all TE’s and sessions (Figure 1), with high Signal-to-noise ratios (SNR), narrow linewidths (LW) and consistent voxel placement (Table 1). Metabolite T₂s are reported in Figure 2 (singlets) and 3 (J-coupled). Signal decay fits exhibiting reliable exponential decay fit (R²), low CV, and tight confidence intervals i.e., CR reflect reliable and well-constrained T₂ estimates. Most metabolites with good spectral fit showed CV below 10% and CR below 30%, indicating reliable T₂ estimation. Table 1 summarises CV, CR, and power estimates for all metabolites. The goodness-of-fit of the exponential fit (R²) and the Cramér–Rao lower bounds (CRLB) were recorded for each metabolite as indicators of fit quality and quantification uncertainty, respectively.

Discussion and Conclusion The R² of the Glu-T₂ decay fit was lower relative to other metabolites, likely due to imperfect modelling of J-evolution rather than true instability of the T₂ estimate itself, yet CV and CR remained acceptable. Metabolites with high CRLBs across TEs yielded T₂ decay fits with wide CR and elevated CV, making reliable T₂ estimation challenging, reflecting that the SNR of these metabolites was insufficient to constrain the exponential fit, rather than true T₂ variability. Findings of this study show that T₂ relaxation times of sNAA, tCr [N(CH3), 2CH2], Glu and mI+Gly can be reliably reproduced with modest sample sizes of both longitudinal (Δ=10%; 2-5) and cross-sectional (Δ=10%; 5-14) study designs, demonstrating that metabolite T2s are sensitive to detect differences in both longitudinal and cross-sectional design.
Avneesh JAIN (Trondheim, Norway) , Guglielmo GENOVESE
16:15 - 17:00 #53452 - P282 Metabolic Changes in the Primary Motor Cortex Following Laser Interstitial Thermal Therapy Thalamotomy for Drug-Resistant Essential Tremor: An MR Spectroscopy Study.
P282 Metabolic Changes in the Primary Motor Cortex Following Laser Interstitial Thermal Therapy Thalamotomy for Drug-Resistant Essential Tremor: An MR Spectroscopy Study.

Magnetic resonance-guided laser interstitial thermal therapy (LITT) thalamotomy targeting the ventral intermediate nucleus (VIM) is an emerging minimally invasive treatment for disabling, Drug-resistant Essential Tremor (ET). Although its clinical efficacy has been demonstrated, the impact of this intervention on the cerebello–thalamo–cortical network, which is implicated in the pathophysiology of ET, remains incompletely characterized [1]. As a major key node within this network, the primary motor cortex (M1) may undergo functional and metabolic changes following VIM ablation. The present study therefore investigated longitudinal metabolic alterations in M1 following LITT thalamotomy using proton magnetic resonance spectroscopy.

Twenty-one patients with Drug-resistant ET who underwent LITT thalamotomy at Amiens University Hospital between March 2019 and March 2025 were prospectively enrolled and followed. MRI and MRS examinations were performed at five time points: preoperatively (baseline), immediately postoperatively, at postoperative days 2–5, at 6 months, and at 12 months after treatment. MRI data included T1-weighted, T2 FLAIR, T2*, diffusion-weighted imaging, perfusion imaging, and 3D T1-weighted sequences. Proton single Voxel Magnetic Resonance Spectroscopy was performed on the M1 region using a Point RESolved Spectroscopy (PRESS) sequence at three echo times (TE: 35 ms, 144 ms, and 288 ms). MRS spectra were analyzed using LCModel software to quantify metabolite ratios, including Choline (Cho), N-Acetyl-Aspartate (NAA), Myo-Inositol (mI), Glutamine-Glutamate complex (Glx), lactate, and CH2 and CH3 phospholipids, normalized to Creatine (Cr).

A significant increase in the NAA/Cr ratio was observed in the primary motor cortex. This increase was progressive over time, reaching a 21% elevation at 12 months, with mean values rising from 1.49 in the immediate postoperative period to 1.81 at 12 months (p = 0.04). In contrast, no statistically significant changes were observed in other metabolite ratios, including Cho/Cr (p = 0.08), Lac/Cr (p = 0.39), and mI/Cr (p = 0.40), despite these metabolites being commonly reported as altered when spectroscopic measurements are performed directly within the VIM thalamotomy lesion.

The present findings demonstrate that LITT thalamotomy is associated with progressive metabolic changes in the primary motor cortex, a key node of the cerebello–thalamo–cortical network [2]. The observed progressive increase in NAA/Cr over time suggests a remote cortical response to VIM ablation and may suggest an improvement in neuronal function within the M1 region. More broadly, these results support the hypothesis that thalamotomy induces network-level adaptations extending beyond the lesion site, potentially reflecting cortical plasticity and/or functional reorganization of tremor-related network.

To our knowledge, this is the first study to investigate remote cerebral effects following LITT thalamotomy in Essential Tremor. The observed metabolic changes in the primary motor cortex provide further evidence that the effects of thalamotomy extend beyond the targeted VIM lesion. Future studies integrating metabolic, functional, and clinical measures are needed to better determine the significance of these changes for long-term therapeutic outcomes.
Salem BOUSSIDA (Amiens) , Romain DRAILY , Aurélien LAMBERT , Adrien PANERO , David LAYANI , Mickael AUBIGNAT , Melissa TIR , Michel LEFRANC , Jean-Marc CONSTANS
16:15 - 17:00 #54706 - P283 Tracking longitudinal metabolic changes during training in spinal cord injury: A 1H-MRS study.
P283 Tracking longitudinal metabolic changes during training in spinal cord injury: A 1H-MRS study.

Spinal cord injury (SCI) causes structural and metabolic changes beyond the lesion site, affecting key regions of the motor pathway involved in lower-limb control [1-2]. In particular, the leg area of the primary motor cortex and the lumbar spinal cord enlargement are important targets because they contain supraspinal and spinal components of lower-limb motor function [3]. Recent magnetic resonance spectroscopy (MRS) work has shown altered metabolite levels in both regions after SCI, suggesting remote neuronal changes along the motor system [3]. Rehabilitation and intensive training can enhance patients’ recovery, and drive neuroplasticity involving metabolic changes. Although previous research has characterized structural changes [4], metabolic changes that may impacted by training or contribute to this degeneration process remain insufficiently explored. In this study, we used MRS across multiple training time points to track potential changes in metabolite levels during training. We focused on metabolites linked to neuronal health, membrane turnover and glial activity including total N-acetylaspartate (tNAA), total choline (tCho), and myo-inositol (mI) [5]. This study aims to examine whether training is linked to changes in metabolite levels in the primary motor cortex and lumbar spinal cord in chronic SCI cohort.

MRS acquisition Thirteen chronic SCI patients (age [mean ± SD]: 53.6 ± 15.7 years, male/female: 11/2) underwent MRI/MRS assessments at baseline (BSL), after 2 weeks follow up (FUP1), and after 6 weeks (FUP2) during one of two walking interventions: individualized deficit-oriented training based on 3D gait analysis or standardized walking training over 6 weeks (3 h/week). MR data were acquired on a 3T MRI scanner (Magnetom Prisma, Siemens) using a standard Siemens 64-channel head and neck receive radiofrequency (RF) coil for the brain, while a 32-channel spine receive coil and an 18-channel body receive coil were used for covering the lumbar cord. Using single-voxel 1H-MRS in two regions of the lower-limb motor pathway: the leg area of the primary motor cortex and the lumbar spinal cord enlargement (Figure 1). MRS was performed using semi-LASER localization with metabolite cycling [6], together with structural MRI for voxel placement (Table 1. The protocol was designed to quantify metabolites related to neuronal integrity and excitatory/inhibitory neurotransmission, including tNAA, tCho, mI, tCr, Glx, and GABA. Image and spectroscopy processing MRS data were processed and quantified using a linear-combination fitting approach (FitAID) [6]. Following the previous SCI MRS methodology [3], metabolite estimates were quality-controlled using linewidth and Cramer-Rao lower bounds, and metabolite concentrations were analyzed in the brain and spinal cord separately. Statistical analysis Longitudinal metabolite changes were analyzed using linear mixed-effects models with concentration as the dependent variable, time as the main predictor, age and gender as covariates, and a random intercept for patient.

Table 1 summarizes the results for brain and spinal cord metabolite concentrations. For each metabolite, session effects FUP1 and FUP2 are reported relative to baseline, with age and gender included as covariates. Brain and lumbar cord analyses included each 12 patients. The reported averaged values shown in (Figures 2-3) are consistent with previous studies [3].

Our preliminary results suggest that metabolite concentrations in the motor cortex and lumbar enlargement spinal cord remained relatively stable during the 6-week training period. In chronic SCI, large spontaneous metabolic changes are not expected over a few weeks; therefore, the main relevance is to explore whether intensive motor training can induce detectable metabolic adaptations. The non-significant brain GABA decrease at FUP1 was not sustained at FUP2 and should be interpreted cautiously. Decreased GABA concentrations in response to exercise training have been reported previously [8]. Age effects for brain Glx and tNAA, and the gender association for brain tNAA, highlight the need to account for demographic covariates in future analyses. The structural data will be analyzed as next step for volume changes over training.

This study showed significant brain GABA decrease at FUP1 compared to BSL . However, the rest of group-level metabolite changes in brain or spinal cord showed no significant across training time points. These preliminary findings support the feasibility of repeated MRS acquisition across the motor system and highlight the need for larger datasets including demographic covariates, structural MRI, and neurological outcomes to assess whether MRS biomarkers can track training-related CNS adaptation after SCI.
Maria JACOME (Nottwil, Switzerland) , Anna LEBRET , Sabrina IMHOF , Anna-Sophie HOFER , Sibylle ACHERMANN , Stefanie FUEREDER , Linard FILLI , Roland KREIS , Maryam SEIF , Björn ZÖRNER
16:15 - 17:00 #54557 - P284 Magnetic Resonance Spectroscopy Study of Pediatric Traumatic Brain Injury.
P284 Magnetic Resonance Spectroscopy Study of Pediatric Traumatic Brain Injury.

Traumatic brain injury (TBI) is one of the leading causes of death and disability in children [1]. The physiological mechanisms underlying TBI differ depending on injury severity. As injury severity increases, structural and functional alterations in the brain become more pronounced and are reflected in neuroradiological markers. Assessment of biochemical markers is essential for understanding the pathophysiological processes associated with TBI. Magnetic resonance spectroscopy (MRS) enables noninvasive evaluation of these biochemical changes. Although numerous studies have investigated this topic, the pediatric population remains less extensively studied. In the present study, we investigated a broad cohort of pediatric patients with varying injury severities to identify major trends in MRS-derived metabolic markers.

This retrospective study included 84 patients (35 females and 49 males; age range: 0–17 years, fig. 1), nineteen of whom underwent multiple MRI examinations. At the time of scanning, the cohort was heterogeneous with respect to time since injury, patient age, and injury severity. All examinations were performed on a 3.0T Philips Achieva MRI scanner using a 20-channel head and neck coil. Single-voxel proton MRS was acquired using a PRESS pulse sequence. Spectra were collected from four regions: right and left frontal lobes, and right and left thalami. The following acquisition parameters were used for all measurements: TR = 2000 ms, TE = 35 ms, number of averages = 128, spectral bandwidth = 2000 Hz, and 1024 sampling points. Voxel sizes were 15 × 10 × 15 mm³ for the thalami and 20 × 20 × 20 mm³ for the frontal lobes. In total, 282 spectra were obtained. T1-weighted 3D images were acquired using a TFE sequence (TR = 8.2 ms, TE = 3.8 ms, flip angle = 8°, isotropic voxel size = 1 × 1 × 1 mm³, matrix size = 512 × 512). Spectroscopic data were quantified using LCModel (v6.3.1). Concentrations of NAA, Cr, mI, Glx, and Cho were evaluated. The relationships between metabolite concentrations and clinical variables were evaluated using a linear mixed-effects model. The analysis included natural logarithm of time since trauma [log(TraumaDay)], hemisphere of acquisition, anatomical region, sex, age, and injury severity score (GCS) as fixed effects. To account for repeated MRS examinations in the same patient, subject-specific random effects were included in the model. This approach allowed us to assess metabolite changes while considering within-subject correlations and inter-individual variability.

The linear mixed-effects model demonstrated statistically significant regional differences (relative to thalamus) for NAA (β = −0.55, p < 0.001), Cr (β = −0.44, p < 0.001), Cho (β = −0.35, p < 0.001), and mI (β = −0.60, p < 0.001). The variable log(TraumaDay) was significantly associated with NAA (β = −0.26, p < 0.001), Glx (β = −0.37, p = 0.004), and mI (β = 0.49, p < 0.001). NAA (β = 0.57, p < 0.001) and Cr (β = 0.68, p = 0.04) concentrations correlated with GOSE-Peds scores.

Consistent with previous studies, NAA demonstrated the most pronounced effect among all evaluated metabolites[2]. Despite the simplified acquisition and processing protocol used in this study, the obtained results were generally consistent with previously reported findings. However, our findings partially contradict earlier reports, which typically describe increased NAA accompanied by decreased mI concentrations in periods from acute to chronic, whereas in our cohort NAA was decreased and mI was increased [3]. One possible explanation may be deterioration of patient conditions in our cohort. Additional evaluation of patients’ clinical status is therefore warranted.

Obtained results suggest that the proposed approach is capable of capturing relevant TBI-related metabolic changes and may provide a practical framework for future studies and clinical applications.
Alexey YAKOVLEV (Moscow, Russia) , Maxim UBLINSKIY , Olga BOZHKO , Ilya MELNIKOV , Tolibjon AKHADOV
16:15 - 17:00 #54136 - P285 Spectroscopic and Metabolic Signatures Associated with SARS-CoV-2 Virological Features in Neurological Long COVID.
P285 Spectroscopic and Metabolic Signatures Associated with SARS-CoV-2 Virological Features in Neurological Long COVID.

It is established that COVID-19 can cause acute, delayed, and persistent neurological complications, including anosmia, ageusia, fatigue, attention and concentration impairments, language disturbances, and memory impairment [1]. Although extensive research has been conducted, knowledge remains limited regarding the metabolic and spectroscopic abnormalities underlying these impairments. Moreover, the emergence of SARS-CoV-2 variants has raised additional questions about their potential impact on neurological complications. In this context, we present results from a study that investigated the relationships between SARS-CoV-2 virological characteristics and spectroscopic and metabolic abnormalities related to neurological damage in Long COVID patients with neurological symptoms.

The study included 50 patients with Long COVID who underwent a multidisciplinary assessment combining non-invasive neuroimaging, clinical evaluation, and virological investigations. Clinical assessment focused on disabling symptoms and neurological signs, while virological analyses included viral sequencing, screening, and viral load estimation based on Reverse Transcriptase–Polymerase Chain Reaction (RT-PCR) cycle threshold values. Neuroimaging data were acquired using Magnetic Resonance Imaging (MRI) and Proton Magnetic Resonance Spectroscopy (1H-MRS). MRI included 3D T1-weighted spin-echo sequences acquired before and after gadolinium administration, T2*-weighted gradient-echo imaging (or Susceptibility-Weighted Imaging, SWI), diffusion-weighted imaging (DWI), T2-fluid attenuated inversion recovery (T2-FLAIR), coronal T2-weighted imaging, and Time-of-Flight Magnetic Resonance Angiography (TOF-MRA). Single-voxel 1H-MRS was performed using the Point-Resolved Spectroscopy (PRESS) sequence at three echo times (TE = 35, 144, and 288 ms). Spectra were acquired from the medial frontal cortex, hippocampus, and pons. Metabolite quantification was performed using LCModel, and metabolite ratios relative to creatine (Cr) were calculated, including choline (Cho), N-acetylaspartate (NAA), myo-inositol (mI), glutamate-glutamine complex (Glx), lactate, and phospholipid resonances (CH2 and CH3).

The principal findings were: 1. 1H-MRS revealed significant metabolic abnormalities in Long COVID patients, despite the absence of abnormalities on conventional MRI, involving the hippocampus, pons, and medial frontal cortex with region-dependent variability. 2. The spectroscopic pattern observed across patients includes neuroinflammation, glutamatergic dysregulation, impaired energy metabolism, and early neuronal dysfunction. 3. A significant association was found between SARS-CoV-2 variants and the severity of metabolic alterations (Kruskal–Wallis test, p = 0.003). The most severe abnormalities were observed in patients infected with the Delta variant, followed by the Wuhan strain, Alpha, and Omicron variants. 4. No significant association was observed between SARS-CoV-2 viral load, estimated from RT-PCR cycle threshold values, and the severity of metabolic abnormalities. 5. Inter-individual variability in metabolic profiles was observed across brain regions, consistent with the clinical heterogeneity of Long COVID neurological manifestations.

Beyond confirming the presence of metabolic brain alterations, 1H-MRS results suggest a diffuse but heterogeneous cerebral involvement, consistent with the clinical variability observed across patients. Importantly, the significant association between SARS-CoV-2 variants and the severity of metabolic abnormalities supports the hypothesis that virological characteristics may influence the extent and nature of neurological involvement. This relationship may partly explain the heterogeneity of neurological symptoms observed in Long COVID. In contrast, the absence of association between viral load, as estimated by RT-PCR cycle threshold values, and metabolic abnormalities suggests that acute viral burden alone is not a major determinant of persistent cerebral metabolic alterations. Overall, these findings may provide further insights into the pathophysiological mechanisms underlying persistent neurological symptoms in Long COVID [2], and support the concept that distinct SARS-CoV-2 variants may be associated with different metabolic and neurological profiles. This may contribute to more stratified approaches for the management of neurological Long COVID patients.

Brain metabolic abnormalities detected by 1H-MRS support the presence of persistent cerebral dysfunction in neurological Long COVID although non-detectable with conventional MRI. The observed association between SARS-CoV-2 variants and metabolic alterations suggests a contribution of the SARS-Cov-2 virological characteristics in shaping neurological outcomes and may help explain the heterogeneity of symptoms observed across patients. Together, these findings may help for developing more tailored clinical strategies to improve the management of Long COVID patients.
Salem BOUSSIDA (Amiens) , Antoine GALMICHE , Yousef EL SAMAD , Amine ZEMANI , Nicolas DELEVAL , Julien MAIZEL , Olivier GODEFROY , Valery SALLE , Ahed ZEDAN , Catherine LE BRAS , Claire ANDREJAK , Etienne BROCHOT , Severine CASTELAIN , Jean-Marc CONSTANS
16:15 - 17:00 #54683 - P286 MR Spectroscopy and Yoga: Phosphorus MRS in Well-Characterized Individuals With Post-COVID Condition Before and After the Yogic Breathing Intervention Pranayama.
P286 MR Spectroscopy and Yoga: Phosphorus MRS in Well-Characterized Individuals With Post-COVID Condition Before and After the Yogic Breathing Intervention Pranayama.

Persistent dyspnea is a common and disabling manifestation of Post COVID condition, often occurring despite normal pulmonary findings. When associated with palpitations, dizziness, or anxiety, these symptoms are frequently classified as dysfunctional breathing within the spectrum of functional somatic symptom disorders. The neurobiological basis of this condition remains poorly understood. Pranayama, a structured yogic breathing practice, has demonstrated beneficial effects on autonomic regulation and psychophysiological relaxation, suggesting therapeutic potential in affected individuals [1, 2]. This pilot study investigated neurophysiological mechanisms underlying dysfunctional breathing in Post COVID condition, focusing on cerebral bioenergetics assessed by phosphorus magnetic resonance spectroscopy (31P-MRS) [3]. This technique enables non-invasive quantification of metabolites related to mitochondrial energy metabolism, membrane turnover, and intracellular regulation. By comparing metabolic profiles before and after a structured Pranayama intervention, we aimed to identify neuroenergetic adaptations associated with symptom improvement and autonomic recalibration.

31P-MRS quantified cerebral metabolites including inorganic phosphate (Pi), phosphocreatine (PCr), adenosine triphosphate (ATP), phosphomonoesters (PME), and phosphodiesters (PDE). Intracellular pH was derived from Pi chemical shift, while free Mg2+ concentrations were calculated from β-ATP resonance shifts. Analyzed parameters included PCr/ATP, PCr/Pi, Pi/ATP, PME/PDE, intracellular pH, and free Mg^2+. Spectroscopy data were acquired from the frontal cortex/anterior cingulate cortex, thalamus/basal ganglia, occipital cortex, and whole-brain averages. Participants presented with persistent physical and psychological symptoms following COVID-19 infection and underwent psychometric and mitochondrial assessments. Measurements were performed on a 3T Siemens Skyra MRI system using a double-tuned 1H/31P head coil. Spectral fitting was conducted in jMRUI 5.0 using the AMARES algorithm. Statistical analyses were performed in R (v4.3.0), comparing pre- and post-intervention values using paired t-tests or Wilcoxon signed-rank tests (α = 0.05).

Moderate Pranayama training induced consistent metabolic alterations across investigated brain regions. PCr/ATP ratios remained stable, indicating preserved energetic equilibrium. In contrast, PCr/Pi ratios increased, whereas Pi/ATP and PME/PDE ratios decreased in most participants. This pattern suggests enhanced phosphocreatine buffering capacity, reduced inorganic phosphate availability, and improved neuroenergetic efficiency with lower ATP turnover. Reduced PME/PDE ratios indicate decreased membrane synthesis relative to degradation, consistent with stabilization of membrane dynamics and reduced synaptic remodeling. These findings may reflect diminished neuronal excitability and lower metabolic demand associated with autonomic downregulation induced by controlled breathing. Intracellular pH values shifted toward slightly more alkaline conditions, compatible with reduced metabolic acidosis and improved mitochondrial efficiency. Free Mg2+ concentrations increased modestly, supporting a more favorable intracellular energetic environment. Collectively, these findings indicate coordinated neurochemical adaptations characterized by reduced energetic strain and improved metabolic efficiency following Pranayama practice.

This pilot study demonstrates that moderate Pranayama intervention induces measurable neurochemical alterations in individuals with Post COVID condition. Increased PCr/Pi ratios combined with reduced Pi/ATP and PME/PDE ratios suggest downregulation of cerebral energy turnover and membrane dynamics, consistent with reduced neuronal activation and enhanced parasympathetic dominance. These metabolic signatures align with established psychophysiological effects of yogic breathing, including autonomic recalibration and reduced metabolic stress.

Despite the limited sample size, the findings support the sensitivity of 31P-MRS for detecting breathing-induced neurometabolic adaptations and provide preliminary evidence that Pranayama may improve cerebral bioenergetic efficiency in dysfunctional breathing associated with Post COVID condition. Further controlled studies are warranted to validate these observations and establish neurobiological biomarkers for targeted therapeutic interventions.
Ruth STEIGER (Innsbruck, Austria) , Malik GALIJASEVIC , Matthias Florian GROELL , Philipp NELLES , Noora Pauliina TUOVINEN , Elke GIZEWSKI , Katharina HÜFNER
16:15 - 17:00 #54726 - P287 NMR metabolic profiling of ultrafiltered human synovial fluid in progressive osteoarthritis.
NMR metabolic profiling of ultrafiltered human synovial fluid in progressive osteoarthritis.

Introduction: The metabolic by-products in osteoarthritic pathogenesis are first released by the cartilage matrix into the joint fluid, making synovial fluid (SF) analysis one of the best means by which to obtain biochemical information about the metabolic status of a specific joint. Our previous metabolomics studies using high-resolution 1H NMR spectroscopy have shown that there are considerable metabolic differences between normal and OA SF. In this study we use NMR spectroscopy to characterize the metabolome of ultrafiltered human SF in progressive osteoarthritis.

Methods: Synovial fluid samples were obtained from the knees of patients undergoing arthroscopic debridement for treatment of OA. The degree of osteoarthritis was established during arthroscopy, using a scoring system based on the degree of damage to the articular cartilage.1 Five samples from each of four categories of progressive (mild, moderate, marked and severe) OA were filtered using 30 kD MWCO centrifugal filters; The filters were all repeatedly rinsed (12 times) with 2mL 0.1M NaOH, followed by 2mL distilled H2O (8 times) to remove any traces of the glycerin coating covering the filter membranes. 1.2 mL of each samples’ filtrate were then combined together into four 6 mL pooled samples. The samples were then freeze-dried and reconstituted in 0.6 mL of D20 resulting in a 10-fold increased effective concentration. Single pulse 1-D and 2-D COSY, TOCSY and J-resolved NMR spectra were subsequently acquired on a 12 T, (500 MHz - 1H) Varian spectrometer. Chemical shifts of all observed metabolites were referenced to a known concentration (0.5 mg/100 μL) external-internal standard of sodium 3-(trimethylsilyl-2,2,3,3-2H4)-1-propionate (TSP, δ = 0 ppm) contained inside a capillary tube placed co-axially at the center of each NMR tube. All spectra were measured at ambient probe temperature (25°C). For each sample, 256 FIDs were acquired into 16,384 data points with a spectral width of 6000 Hz. The raw spectra were zero-filled to 262 K data points, phase-corrected, baseline corrected and calibrated with respect to the TSP signal from the internal/external capillary reference. Spectral profiling was done using the CHENOMX NMR Suite v26.0 software. SF peak assignments were made using the CHENOMX 500 MHz compound libraries, published literature, COSY & TOCSY 2D-correlation spectra and characteristic spin–spin coupling patterns.

Results: Although many metabolite peaks may be identified in T2-filtered CPMG spectrum, they are better resolved once the macromolecular components of the SF have been removed, allowing for more accurate assignment and characterization of metabolite moieties as seen in the CPMG and ultrafiltered spectra of Fig.1. Fifty-seven metabolites were identified in the concentrated/filtered OA-synovial fluids including: 2-Hydroxybutyrate, 2-Hydroxyisovalerate, 3-Hydroxybutyrate, 3-Methyladipic acid, 3-Phenylpropionate, 4-Hydroxyphenyllactate, Acetamide, Acetate, Acetoacetate, Acetone, Alanine, Arginine, Asparagine, Betaine, Butyrate, Carnitine, Choline, Citrate, Citrulline, Creatine, Creatine-phosphate, Creatinine, Dimethylamine, Dimethyl sulfone, Formate, Fucose, Glucose, Glutamate, Glutamine, Glycerol, Glycine, Histamine, Histidine, Isobutyrate, Isoleucine, Isopropanol, Lactate, Leucine, Lysine, Malonate, Mannitol, Mannose, Methanol, Methionine, Myo-Inositol, Phenylalanine, Proline, Pyridoxine, Pyroglutamate, Pyruvate, Serine, Succinate, Threonine, Trimethylamine, Tyrosine, Valerate and Valine.

Discussion: Centrifugal filtration removes proteins and high-molecular-weight hyaluronan from the SF, so that the resulting filtrate contains only the small-molecule metabolome. It also separates free vs bound metabolite fractions, potentially providing a more accurate representation of bioavailable joint metabolites. Lyophilizing (freeze-drying) and reconstituting the filtered permeate in D2O concentrates the metabolites into a much smaller final volume, thereby improving the signal-to-noise ratio and thus the range of NMR detectability. The removal of macromolecular components from joint fluid through filtration, combined with concentration of SF samples from distinct patient cohorts of progressive OA not only improves the identification of low-concentration metabolites, but also provides a more accurate baseline overview of metabolic species present in OA SF for larger population-based metabolomics studies of OA.

Conclusions: The characterization and assignment of low-molecular weight components of human SF in progressive OA serves to identify potential NMR-observable biomarkers of cartilage degradation, inflammatory processes and disease-related alterations in joint metabolism. The results outlined in this work should prove valuable in understanding the metabolic mechanisms underlying osteoarthritis.
Andrei DAMYANOVICH (Toronto, Canada) , Lisa AVERY , Wayne MARSHALL
16:15 - 17:00 #54560 - P288 Optimisation of Inversion Pulse Scaling for Cardiac 1H WSC-STEAM MRS at 7T.
P288 Optimisation of Inversion Pulse Scaling for Cardiac 1H WSC-STEAM MRS at 7T.

Ultra-high field strength (7T) cardiac 1H MRS provides higher SNR and spectral resolution than clinical field strengths (e.g. 1.5 T) [1], enabling more reliable detection of low-concentration cardiac metabolites. However, at 7T, the short RF wavelength in tissue produces substantial transmit inhomogeneity, such that B1+ varies markedly across the chest. Consequently, the effective flip angle generated by a nominal RF pulse may differ substantially between RF shim settings and across the spectroscopy voxel. This is particularly important for alternating-transient spectroscopy schemes, such as water-suppression cycling (WSC) [2], in which the expected phase behaviour relies on reproducible inversion of selected transients. Our previous work [3] has shown that the mean reference voltage (RefV) in a representative spectroscopy voxel within the cardiac ROI is 970 V, averaged across 18 healthy volunteers. In this work, a modified STEAM sequence was implemented to examine the relationship between voxel RefV and the nominal inversion-pulse scaling required to achieve the target phase behaviour, with a view to providing an optimal setting for the conditions expected in the cardiac ROI.

All experiments were performed in a fat/water phantom on a Siemens 7T Magnetom scanner using an 8-channel fractional antenna torso coil (MR Coils, Zaltbommel, The Netherlands). A modified STEAM sequence (TE/TM/TR=30/10/2000 ms) was implemented in Siemens IDEA, in which conventional water suppression was disabled and a single additional inversion pulse was applied immediately before STEAM on alternating (odd) transients only. The same fat vial was used for all shim conditions (Figure 1a). The inversion pulse amplitude was scaled from % up to 400% of the nominal 180° pulse amplitude. For each pulse amplitude, 6 acquisitions were obtained (3 odd and 3 even transients). Measurements were repeated under different pTx phase shims, with the scanner reference amplitude fixed at 227 V, to generate different reference voltages within the spectroscopy voxel; lower-RefV conditions were expected to require lower nominal pulse scaling. B1+ [4] maps were acquired for each shim condition (Figure 1b-c). Spectra were analysed in jMRUI using AMARES, odd–even phase differences were quantified from the fitted fat peak, and further analysis was performed in Python (Figure 2). Agreement with the ideal alternating-transient response was quantified using the circular distance from 180°, and linear regression was used to estimate the nominal inversion-pulse scaling required under in vivo septal conditions.

The modified alternating-transient STEAM experiment showed that the odd–even fat phase response depended strongly on nominal inversion-pulse scaling and voxel mean RefV (Figure 3). As inversion pulse scaling increased, the phase difference achieved the desired 180° condition before dropping back down to 0° at higher scaling values, but the required scaling for the desired 180° condition varied substantially between shim settings, with lower-RefV conditions reaching this regime at lower scaling amplitudes. The purple '227V' curve reached the desired 180° condition at approximately 100% nominal pulse scaling, as expected for the condition acquired at the fixed global scanner reference voltage of 227 V. Across shim conditions, the required nominal pulse scaling increased approximately linearly with voxel mean RefV. Linear regression (Figure 4) showed a strong positive association between RefV and the minimum nominal pulse scaling required to achieve the 180° +/- 5° condition (R^2=0.80, p=0.041). Extrapolation of this relationship to an in vivo septal RefV of 970 V predicted that a nominal pulse scaling of approximately 268% would be required at a fixed 227 V scanner reference voltage.

These results indicate that the nominal inversion-pulse scaling required to achieve the target alternating-transient response increases substantially, and approximately linearly, with local RefV. Given the high RefV expected in vivo in the septum at 7T, the data suggest that nominal inversion-pulse scaling well above 250% may be required to achieve the desired inversion condition in the human heart. This highlights the practical importance of accounting for local transmit conditions when setting inversion-pulse amplitude for cardiac spectroscopy at 7T.

The optimal nominal inversion-pulse scaling increased with voxel RefV, and extrapolation to an in vivo septal RefV of 970 V suggests that a scaling above 250% may be required to achieve the desired alternating-transient response. These findings support the use of RefV-informed pulse adjustment to improve the robustness of cardiac spectroscopy at 7T.
Erin MCCONNELL MONTOYA (Oxford, United Kingdom) , Damian J. TYLER , Ladislav VALKOVIČ
16:15 - 17:00 #54411 - P289 Single-voxel T2–T2 Relaxation Exchange Spectroscopy (SV-REXSY): Development and In Vitro Validation.
P289 Single-voxel T2–T2 Relaxation Exchange Spectroscopy (SV-REXSY): Development and In Vitro Validation.

In biological tissues, water T2 relaxation has been shown to be multiexponential, reflecting the presence of distinct water compartments (1). In skeletal muscle, multicomponent water T2 relaxometry metrics are sensitive to different physiological and pathological changes (2–4). Nonetheless, the biophysical nature of these compartments remains debated. 2D T2–T2 Relaxation Exchange Spectroscopy (REXSY) (5,6), based on the CPMG-storage-CPMG sequence (Figure. 1a), provides further insight into this question by enabling the measurement of intrinsic compartment sizes and relaxation times as well as intercompartmental exchange rates. However, REXSY studies are so far limited to in vitro and ex vivo applications due to the lack of spatial localization. In this work, we develop a single-voxel REXSY sequence and demonstrate its feasibility through an in vitro validation experiment using an aqueous urea phantom.

Sequence design: Single voxel selection was accomplished by incorporating slice-selective RF pulses and magnetic field gradients into the standard REXSY sequence (Figure 1b). Phantom preparation: An 8-molal aqueous urea solution was prepared, providing a system with 2 exchanging compartments characterized with distinct T2 values (urea and water protons). Data acquisition: Experiments were performed at bore temperature (~22 °C) on a pre-clinical 7T system. Two datasets were acquired: (1) an SV-REXSY acquisition from a 3×3×3 mm³ voxel positioned within the urea solution, and (2) a non-localized REXSY acquisition, obtained by disabling the slice-selective gradients of the same sequence (Figure 1b). Both acquisitions shared the following parameters: inter-echo spacing (IES) = 2.5 ms; Repetition time = 10 s; 15 CPMG preparations, where the echo-train-length of the first CPMG (N1) varied from 2 to 80 in 15 pseudo-logarithmically spaced steps, being always an even number; 15 mixing time (TM) values: 4 linearly spaced in 20 ms increments from 50 to 110 ms, and 11 logarithmically spaced from 110 to 700 ms; and the echo-train-length of the second CPMG (N2) was 80. Only the even echoes of the 2nd CPMG train were used, resulting in 15 sets (one per TM interval) of 2D T2-T2 relaxometry matrices of size 15x40, for each dataset. A 4-step phase-cycling scheme was applied on the 2nd and 3rd 90° pulses, and on the ADC (Figure 1b) for selecting only the REXSY signal pathway. One-dimensional spatial profiles of the REXSY signal were additionally acquired (exclusively for the N1 = 2 and TM = 50 ms) along the X, Y, and Z directions for both the SV-REXSY and non-localized sequence versions (Figure 1c). These profiles were compared to assess the ability of the SV-REXSY sequence to confine the signal to the target voxel. Analysis: For both the localized and non-localized datasets, the model in equation [1] was fitted to each 2D T2-T2 matrix using a non-negative nonlinear least-squares optimization (7). Where the fitted parameters, T21 and T22 are the apparent T2 values characterizing the multiexponential relaxation behavior of the system, P11 and P22 are the amplitudes of the magnetization that relaxed with the same apparent T2 during both CPMG experiments, while P12 is the amplitude of the magnetization that relaxed with different apparent T2 values during each CPMG experiment. Then the estimated peak amplitudes as a function of TM, were fitted to a theoretical model derived from the analytical solutions of the Bloch-McConnell equations (6), using the apparent T2 values as constraints, to estimate the intrinsic system’s compartment fractions (M0u, M0w), longitudinal and transverse relaxation times (T1u, T1w, T2u,T2w), and the intercompartmental exchange rate kuw.

From the first optimization, the Pij amplitudes estimated at each TM value are shown in Figure 2, with apparent T2 values of T21= 24.96±0.09 ms and T22= 225.62±0.81 ms for the non-localized REXSY, and T21= 25.83±0.35 ms and T22= 229.07±1.24 ms for the SV-REXSY. From the second optimization, both acquisitions yielded consistent estimates of the system’s intrinsic parameters (Table 1). The spatial profiles acquired along the X, Y, and Z directions demonstrate the confinement of the SV-REXSY signal to the target voxel (Figure 3).

SV-REXSY is a promising tool for measuring intrinsic parameters and exchange rates of water compartments in specific anatomical structures in vivo, providing new insights on their biophysical meaning. Changes in these parameters may reflect alterations in tissue microstructure associated with pathological conditions, opening new perspectives for the study of diseases. Future work will focus on extending this approach to in vivo acquisitions.

The proposed SV-REXSY sequence successfully recovers the intrinsic parameters of the two compartments, consistent with those obtained from the non-localized acquisition, while confining the signal to the target voxel as confirmed by the spatial profiles.
Nacira MENDJEL (Paris) , Ericky CALDAS DE ALMEIDA ARAUJO
16:15 - 17:00 #54508 - P290 First worldwide multicenter validation of the POLARIS preclinical PHIP polarizer across biological models and imaging paradigms.
P290 First worldwide multicenter validation of the POLARIS preclinical PHIP polarizer across biological models and imaging paradigms.

Hyperpolarized (HP) ¹³C compounds allow sensitive, non-invasive tracking of metabolism in cancer, neurodegeneration, and cardiovascular disease [1,2]. However, widespread use is limited by complex, hard-to-reproduce production. This study evaluates POLARIS Preclinical, a PHIP-based hyperpolarizer, across eight sites in Europe and the US (Fig.A) 3. HP [1-¹³C]pyruvate was consistently produced in 90 seconds, and in vivo MRI at 3 T, 7 T, and 9.4 T detected downstream metabolism to lactate and/or bicarbonate across models, showing that multicenter, high-throughput HP-MRI is feasible for translational metabolic imaging.

Experiments used the POLARIS Preclinical polarizer (NVision Quantum), an integrated system for producing hyperpolarized ¹³C agents with modules for parahydrogen control, reagent handling, heating, polarization, and purification, operated via touchscreen with guided protocols (Fig.B). Specifically, the system features a touchscreen interface, reagent area, and compartments for parahydrogen, nitrogen cylinders and waste, with ports for syringe-based sample handling. The workflow has four steps: (1) prepare the sample with pre-filled vials; (2) load and polarize it; (3) automate purification to remove catalyst and byproducts; and (4) extract the purified HP solution for in vitro & in vivo use. Centrally supplied reagent kits were mixed manually, heated, bubbled with parahydrogen, polarized, purified, and collected within 90 s. Polarization and concentration were measured by benchtop NMR; residual acetone and pH were quantified. In vivo imaging at 3, 7 and 9.4 T used FID-CSI, FIDALL, slab dynamic, and 3D SSFP sequences. Spectra and MRI data were analyzed to extract pyruvate, lactate, bicarbonate kinetics and exchange rates using MestReNova and NVnmrLib (NVision Quantum).

HP [1-¹³C]pyruvate doses were reliably produced in 90 seconds using POLARIS's standard protocol. Parahydrogen was shipped via mail, and pre-filled vials enabled consistent preparation. Polarization averaged P = 22.1 ± 4.1% and concentration Cpyr = 65.2 ± 2.3 mM (N = 91, using parahydrogen bottles filled 5–41 days before hyperpolarization) (Fig. C). The polarization slope versus cylinder fill day showed minimal drift (< -0.107%/day and -0.25%/day for US- and EU-produced bottles respectively), confirming stability of POLARIS Preclinical over multi-day use. The mean acetone concentration in the final injectable solution was 20.5 ± 2.4 mM. Sample pH was 7.3 ± 0.2. In vivo spectra showed high SNR and detectable signal up to 90 seconds. High lactate production was observed at all field strengths and in all investigated organs including brain, liver and kidney with the thyroid tumors returning the highest lactate signal. Dynamic spectra, in conjunction with anatomical reference scans and schematics outlining the organ of interest, are visualized in Figure D (3T: WashU, IBEC; 7T: TUM, MDA; 9.4T: UCSF, WashY). In addition to lactate and pyruvate, bicarbonate signal was consistently detectable for similar duration in the healthy brain in all scans at 9.4 Tesla. Lactate/pyruvate ratios varied by organ, consistent with literature, and dynamic spectra allowed calculation of kPL for all organs [4,5].

Data from four alpha POLARIS Preclinical hyperpolarizer systems across eight sites produced over 400 hyperpolarized doses without failures, demonstrating strong reproducibility in volume, concentration, and polarization. Minor differences between devices reflected recipe optimization but remained tightly clustered, especially within individual sites. Low residual acetone (~0.2% of the mouse LD50) supported in vivo biocompatibility, while slow polarization decay with parahydrogen cylinder age indicated long shelf life and broad usability after shipment. Installation at all eight sites was completed in a single day, enabling rapid deployment with minimal disruption. Combined with its high-throughput performance, the system is well suited for large-scale preclinical studies requiring efficiency and consistency across extensive datasets.

POLARIS Preclinical consistently achieved DNP-comparable polarization with 20-minute inter-dose times across multiple global sites after installations completed in under a day. In vivo studies showed compatibility with multiple MRI acquisition methods and animal models without adverse effects, while operation required as few as two users. Its high polarization, long T1, and compatibility with nearby NMR/MR systems across field strengths make POLARIS Preclinical a flexible, scalable platform for metabolic imaging. By simplifying workflows and reducing infrastructure and staffing demands, it supports broader adoption of hyperpolarized metabolic MRI.
Myriam CHAUMEIL (Ulm, Germany) , Vencel SOMAI , Hadrien DYVORNE , Christoph MULLER , Galen REED , Catriona ROONEY , Meret CEPERO MALO , Zumrud AHMODOVA , Andrei CHEKUSHIN , Senay KARAALI , Martin GIERSE , Michael KEIM , Pascal RUETTEN , Jochen SCHEUER , Jonas HANDWERKER , Felix JOSTEN , Luca NAGEL , Miriam KIRST , Sandra SUHNEL , Martin GRASHEI , Franz SCHILLING , Stephen LAI , Qing WANG , James BANKSON , David GOMEZ-CABEZA , Lluis MANGAS-FLORENCIO , Gergő MATAJSZ , Vicent RIBAS , Alba HERRERO-GÓMEZ , Irene MARCO RIUS , Ilai SCHWARTZ , Jeremy GORDON , Daniel VIGNERON , Meetu WADHWA , Xiao GAO , Tamara VASILKOVSKA , Andre WENDLINGER , Joshua KAGGIE , Ferdia GALLAGHER , Max BULLOCK , Rafat CHOWDHURY , Shonit PUNWANI , Ashley SHAW , Jim QUIRK , Nicholas VIDAS-GUSCIC , Madison HEADY , Caroline GUGLIELMETTI , Cornelius VONMORZE , Mario CHANG , Saket PATEL , Roberta PIGLIOPOCCHI , Thasin PEYEAR , Kayvan KESHARI , Stephan KNECHT , Renuka SRIRAM
16:15 - 17:00 #53366 - P291 Optimization of Z-spectrum Sampling Density for Amide Proton Transfer Imaging at 3T: A Simulation Study.
Optimization of Z-spectrum Sampling Density for Amide Proton Transfer Imaging at 3T: A Simulation Study.

Amide Proton Transfer (APT), a Chemical Exchange Saturation Transfer (CEST) MRI technique, generates amide contrast by selectively saturating amide protons 3.5 ppm downfield from water [1]. At 3T, APT quantification is challenged by weak amide signal and confounding direct saturation, semisolid magnetization transfer (MT), and static magnetic field B0 inhomogeneity effects [1-3]. Common sampling strategies use uniform z-spectrum spacing of approximately 0.25-0.5 ppm, while some use denser sampling near the amide resonance to improve fitting stability. However, increased sampling density prolongs acquisition time and may provide diminishing returns under signal-to-noise ratio (SNR) and spectral-overlap limitations [4]. Despite widespread use, sampling density effects on APT quantification at 3T remain poorly characterized [5, 6]. It remains unclear whether sub-Hz sampling improves APT metrics or inefficiently increases acquisition time. This study uses simulations to evaluate how reducing z-spectrum sampling density affects repeatability and accuracy of magnetization transfer ratio asymmetry (MTRasym) APT quantification at 3T.

APT CEST z-spectra were simulated at 3T using a multi-pool Lorentzian model including direct water saturation, semisolid MT, amide, and Nuclear Overhauser Enhancement (NOE) contributions [7, 8]. Spectra were generated over a frequency range of ± 6 ppm (± 766 Hz), with the amide resonance centered at 3.5 ppm (~448 Hz). A high-resolution reference spectrum was first generated with 0.1 Hz offsets. Additional spectra corresponding to sampling increments of 0.5, 1, 2, 5, 10, 20, and 40 Hz were generated with offsets applied symmetrically about the water resonance. To assess sensitivity to sampling-grid alignment, undersampled offset grids were additionally shifted by ± half the sampling increment. Gaussian noise was added to all spectra to evaluate the robustness of each sampling scheme under noisy conditions. To assess sampling density effects on stability and accuracy, Monte Carlo simulations (N = 500) were performed by repeatedly generating noisy realizations of each sampling scheme. For each condition, mean MTRasym, standard deviation (SD), and bias relative to the reference were computed.

Simulated z-spectra showed minimal differences across sampling densities in the full spectrum. Within the amide region, fine sampling increments (≤2 Hz) produced greater point-to-point fluctuations in the sampled spectra, while moderate sampling densities (5-10 Hz) preserved the overall spectral shape with smoother profiles (Figures 1-2). Corresponding MTRasym curves demonstrated increased variability at fine sampling increments, whereas moderate sampling produced more stable peak characterization (Figure 3). Monte Carlo analysis confirmed that reducing the sampling increment below 5 Hz did not improve mean APT quantification accuracy, with comparable mean MTRasym values observed for 0.5-10 Hz (≈0.025). However, variability was lower for intermediate sampling densities (SD ≈0.003 at 5–10 Hz vs. ≈0.004 at ≤2 Hz), indicating improved repeatability. In contrast, coarse sampling (≥20 Hz) introduced increasing bias due to undersampling of the APT peak, with MTRasym underestimated at 40 Hz (Figure 4).

The results demonstrate that increasing z-spectrum sampling density does not improve APT quantification at 3T under realistic SNR conditions. Lorentzian simulations showed that sub-Hz sampling amplifies measurement variability, while moderate sampling (5-10 Hz) provides a more favorable balance between stability and accuracy. These findings challenge the assumption that sub-Hz sampling near the amide resonance may enhance APT sensitivity. The increased variability observed at fine sampling increments likely reflects the propagation of noise through point-wise MTRasym calculations, rather than improved characterization of the underlying spectral features. Conversely, undersampling at coarse resolutions (≥20 Hz) leads to bias in APT contrast that is sensitive to sampling-grid alignment relative to the amide peak. From a practical perspective, optimized sampling strategies may reduce acquisition time without compromising quantitative performance, which is particularly relevant for clinical translation.

These findings demonstrate that dense z-spectrum sampling, commonly used in APT protocols at 3T, do not provide a practical advantage for APT quantification. Instead, moderate sampling densities (5-10 Hz) achieve comparable accuracy and stability while substantially reducing the number of acquired offsets. At coarse sampling resolutions, APT estimates become sensitive to sampling-grid alignment, further emphasizing the limitations of undersampling. Optimizing sampling strategies in this way may enable more efficient APT imaging without compromising quantitative performance.
Nicole LOFROTH (Calgary, Alberta, Canada, Canada) , Amin MORSHEDI , Chathura KUMARAGAMAGE , Aravind GANESH , G. Bruce PIKE , M. Ethan MACDONALD
16:15 - 17:00 #53611 - P292 Hydration-dependent urea signal detected in renal cyst using CEST MRI.
P292 Hydration-dependent urea signal detected in renal cyst using CEST MRI.

Renal cysts risk stratification is routinely performed using the Bosniak classification based on cyst morphology. However, structural imaging provides limited insight into cyst physiology and biochemical composition. While kidney cysts may appear as water-filled spaces on conventional MR imaging, the view that all cysts are merely closed cavities filled with fluid, is a common misconception: histological studies have shown that renal cysts may contain patent nephrons and participate in urine formation depending on their histological origin [1,2]. Chemical exchange saturation transfer (CEST) MRI enables non-invasive detection of low-concentration metabolites with exchangeable protons in vivo and provides insight into tissue biochemistry[3]. Urea, resonating at +1 ppm, is suitable for CEST detection [4–8]. In particular, urea CEST imaging represents a promising approach for investigating renal cyst physiology. In this study, we demonstrate UPTw contrast hydration-dependent variation in one cyst while remaining stable in others, suggesting that UPTw CEST MRI may potentially provide a novel tool for probing renal cyst physiology. We further show the feasibility of human kidney CEST imaging, and urea mapping in particular, at 7 T for the first time, to the best of authors’ knowledge.

Three volunteers were recruited. Subject 1: female, 30 years, healthy, no renal pathology. Subject 2: female, 30 years, intrarenal right kidney cyst with a thin septum (Bosniak II). Subject 3: male, 73 years, multiple exophytic and parapelvic simple cysts in both kidneys (Bosniak I). 7 T MR examinations (Magnetom 7T, Siemens Healthineers; with parallel transmitting (pTx) system and an 8-channel transmit/receive body coil) were performed for each subject after 10 hours of overnight dry fasting. Subjects 1 and 2 were additionally scanned after ingestion of 10 ml/kg still water (15 min intake, imaging 20 min post-intake). CEST body imaging at 7 T was performed as previously described [9]. B0 and B1+ phase shimming [10], B0 mapping, and MRF-based B1+ mapping [11] were applied for the kidney region. A 2D GRE inversion recovery sequence was acquired if needed for cyst localization. CEST acquisition used saturation amplitude of 0.6 μT and 73 frequency offsets (-300 to 300 ppm) with respiratory synchronization. Data were processed in MATLAB[9]. Magnetization transfer asymmetry (MTRasym) [12] was calculated at 1 ppm, here referred to as urea proton transfer-weighted (UPTw) contrast. Additional 3T scans (Magnetom Vida, Siemens Healthineers) were performed in Subjects 2 and 3.

In Subject 1, UPTw contrast at 7 T showed no difference between fasting and water loading (Fig.1): cortex/medulla values were 1.03±0.94% / 0.81±1.15% (fasting) and 1.23±1.34% / 1.10±1.05% (post-loading). In Subject 2, after fasting, strong UPTw enhancement was observed within the cyst, corresponding to a peak in the Z-spectrum and MTRasym (1ppm) (Fig.2). This signal disappeared after water loading. Mean UPTw values were 17.7±4.1% (fasting) and 1.36±1.85% (post-loading). Subject 3 showed no UPTw enhancement (Fig.3) in cortical or cystic regions after fasting (1.46±1.35% and 1.38±1.55%, respectively).

In the present study, we demonstrated UPTw contrast in the healthy human kidney and in renal cysts. UPTw contrast markedly increased within one cyst after 10 h of dry fasting and fully attenuated 20 minutes after water loading. This effect was observed in a completely intrarenal, medullary cyst but was absent in two peripherally located cortical cysts in another subject. To our knowledge, this phenomenon has not been reported previously. UPTw contrast was homogeneous across cortex and medulla in the healthy kidney and did not depend on hydration status, indicating insensitivity to near-neutral pH conditions typical for healthy tissue. In contrast, cystic fluid may exhibit a wider pH range (4.65–8.30)[13]. The urea CEST signal depends on both urea concentration and pH. Fasting and water loading affect both parameters and may alter urea-related signal in cysts connected to the collecting system. Therefore, one possible explanation is that the cyst exhibiting a urea-related signal is connected to the collecting system[2], whereas cysts without such signal (Subject 3) - not. The medullary location of the former supports this interpretation, while the peripheral location of the latter suggests isolation from the collecting system.

In conclusion, this study demonstrates the feasibility of UPTw imaging as a novel approach, which hold potential to provide insights in renal cyst physiology. These preliminary findings warrant further studies in larger and more diverse patient cohorts, as well as on lower B0 fields.
Petr BULANOV (Heidelberg, Germany) , Christian NEELSEN , Philip S. BOYD , Petr MENSHCHIKOV , Gita SCHÖNBERG , Heinz-Peter SCHLEMMER , Mark E. LADD , Andreas KORZOWSKI , Sebastian SCHMITTER , Johann M. E. JENDE
16:15 - 17:00 #54417 - P293 Optimization of Sequence Parameters for Renal Urea CEST MRI.
P293 Optimization of Sequence Parameters for Renal Urea CEST MRI.

Chemical exchange saturation transfer (CEST) MRI is a promising non-invasive, contrast agent-free approach for renal molecular imaging [1]. However, renal CEST MRI remains challenging due to physiological kidney motion [2], sequence-dependent effects [3] and complex exchange-dependent contrast mechanisms [2,4]. As an important marker of kidney function and renal health [5], urea can be investigated using numerical simulations to model tissue properties, pH- and temperature-dependent exchange processes and optimize pulse sequences [6,7]. This approach establishes a connection between in silico modelling, in vitro experiments, and in vivo imaging. The identification of suitable pulse sequences is intended to lay the foundation for robust endogenous renal CEST and in the long term, may contribute to a detailed understanding of renal physiology, the potential generation of functional pH maps, as well as a possible identification of pathological tissue based on molecular differences.

Pulse sequence parameters were determined using the open-source simulation by Herz et al. [7], which allows for a model-based consideration of the tissue properties and exchanging proton pools of phantom and kidney tissue. Based on the Bloch-McConnell equation, the CEST effect of urea can be simulated in the form of a Z-spectrum, varying the saturation pulse strength B1 from 0.2 µT to 2.0 µT and pulse numbers np between 1 and 50. The simulated CEST effects are quantified using asymmetry analysis [8] and analysed based on the intensity of the CEST peak and its position in the frequency offset to determine the optimal sequence parameter range. To verify the suitability of the corresponding sequence settings, the pulse sequences are tested on a clinical 3 T MRI (Siemens MAGNETON Prisma) through measurements on phantoms. The in vitro study is performed in PBS solutions containing the dissolved metabolite urea with a concentration of 250 mM. The methodology for sequence determination was extended to a two-pool in silico model of the kidney and applied on a healthy subject.

Simulations of two-pool systems demonstrate a strong dependence of the CEST effect on B1 strength and pulse number np, revealing that optimal pulse parameters do not represent a single fixed value but span a physiologically dependent range (Table 1, Figure 1). It is also evident that the pH-dependent exchange rate of urea significantly influences the resulting CEST contrast (Figure 1). Based on these findings, using optimized pulse sequences CEST effects were observed and showed good agreement for MTRasym between the simulation and experiments for urea phantoms at pH 7.0 (RMSE = 1.15%, MAE = 0.78%) and higher deviations at pH 7.3 (RMSE = 3.36%, MAE = 1.27%), particularly around 0 ppm (Figure 2). Using a pulse sequence with B1 = 0.3 µT, 34 pulses and 51 dynamics, NOE and exchangeable proton-related effects of amide (-NH), amine (-NH2) and hydroxyl groups (-OH) were detected in the human kidney (Figure 3).

Differences between simulation and in vitro experiments are likely attributed to a combination of B0/B1 inhomogeneities, the sensitivity of MTRasym, sequence-dependent effects, and an oversimplified model assumption, including a non-ideal representation of T1/T2. Furthermore, the in vivo experiment shows that CEST of various exchangeable proton groups can generally be detected in the kidney. However, the results also highlight the need that extending the system to include a multi-pool model would be promising; however, this approach is limited by insufficient knowledge of exchange and relaxation rates. In addition, the simulation should be expanded to a broader physiological range. This is particularly relevant in the context of the functional and structural heterogeneity of the kidney, as different compartments are characterized by varying metabolic conditions, including local differences in pH [1,2,8]. Regarding the interpretation of in vivo CEST signals, it must be considered that negative CEST effects may occur during MTRasym analysis because of asymmetric contributions, particularly from the NOE [2]. In addition, motion artifacts can influence data processing by causing incorrect mapping of individual pixels to the respective voxels, thereby introducing errors in the generation of the Z-spectra [2,9]. Despite timed breathing [2], motion artifacts can only be minimized but not eliminated.

Using numerical simulations, sequence parameters for endogenous urea amide CEST imaging in phantoms were optimized, yielding observable effects and demonstrating the dependence of CEST contrasts on pH and pulse sequence. In the future, the optimization of pulse sequences for renal CEST imaging could benefit from further knowledge regarding the properties of renal metabolites and physiological pH and temperature ranges, as well as expand the optimization using a multi-pool model.
Anna-Katharina JURIC (Düsseldorf, Germany) , Patrik Jan GALLINNIS , Eric BECHLER , Anja MÜLLER-LUTZ , Julia STABINSKA , Rika MÖLLER , Hans-Jörg WITTSACK
16:15 - 17:00 #54481 - P294 Fat correction methods for CEST MRI at 3T in skeletal muscle pH mapping.
P294 Fat correction methods for CEST MRI at 3T in skeletal muscle pH mapping.

Chemical Exchange Saturation Transfer (CEST) MRI has emerged as a powerful technique for probing metabolic changes and is particularly sensitive to pH alterations in skeletal muscle, a key biomarker in neuromuscular diseases [1]. However, in some pathological conditions, progressive muscle-fat replacement significantly alters the MRI signal, complicating the interpretation of CEST-based metrics. The presence of fat introduces confounding effects on the Z-spectrum, including direct lipid contributions and magnetization transfer interactions [2], which ultimately bias pH estimation. The aim of this study was to compare different fat correction strategies for CEST MRI in skeletal muscle, by evaluating fat correction post-processing applied to images acquired at a single TE (either with water and fat signals in-phase (IP), or in opposed-phase (OP)), or applied to the water-only images following a CEST-Dixon approach, with the goal of identifying the most robust method for accurate pH mapping in the presence of fat.

One healthy volunteer and one patient with a neuromuscular disease were scanned using a 3-T clinical Magnetom PrismaFIT system (Siemens Healthineers, Erlangen, Germany) and a 15-channel transceiver RF coil combined with a 32-channel posterior RF coil. Data were acquired using a 3-pt CEST-Dixon sequence with the following parameters: matrix size = 128×128, field-of-view = 180×180 mm, 16 slices, (slice thickness = 5 mm, TR = 5 ms, 3 TEs (1.23/2.46/3.69 ms), flip angle = 3°, bandwidth = 1300 Hz, 1 average and spiral-out k-space ordering. Magnetization preparation consisted of a 600 ms saturation pulse train composed of 99 ms rectangular pulses separated by 1 ms inter-pulse delays (duty cycle = 99%), applied at a B1 amplitude of 1 μT. The Z-spectra were sampled at 41 frequency offsets regularly spaced between −4 and +4 ppm. M0 images were acquired at -300 ppm. Additionally, WASABI [3] images were acquired for B1+ mapping. Concerning the processing, for each TE, raw magnitude and phase Z-spectra were first corrected for fat signal contamination using a complex-valued approach adapted from Zimmermann et al. [4], in which the fat contribution is estimated and subtracted before normalization by the unsaturated magnetization M0, followed by B0 inhomogeneity correction using an internal ΔB0 map derived from the minimum of the spline-smoothed Z-spectrum. pH maps were then generated by fitting a three-pool Bloch-McConnell model to each corrected Z-spectrum, with intracellular pH derived from the fitted creatine exchange rate [5]. The same pipeline, excluding fat correction, was applied to the water-only images obtained after Dixon-type fat-water separation. Fat fraction (FF) values were calculated using a fat-water separation algorithm based on a multi-peak fat model [6].

The OP fat correction failed to correct the fat contribution around 0 ppm (Fig 1A), resulting in an overcorrected Z-spectrum systematically shifted downward in the positive ppm range. The correction performed satisfactorily at 0 ppm for IP acquisitions (Fig 1B), suggesting that in single-TE protocols an IP TE should be preferred. However, neither approach fully addressed the fat resonance at −3.5 ppm. CEST-Dixon acquisitions enable simultaneous correction of fat contributions both at 0 ppm and at −3.5 ppm (Fig 1C), the latter corresponding to a direct fat effect, distinct from the NOE contribution which remains present. This fat suppression may prove particularly beneficial for improving the accuracy of the overall model fitting for pH estimation. Regarding pH mapping, the OP fat correction failed to recover reliable pH estimates when FF exceeded 10% (Fig 2H), with pH values artificially decreasing toward 6.8 (Fig 3) compared to the ~7.0 measured in regions of low-fat content. The IP fat correction showed improved performance, although a slight overestimation of pH on the order of 0.05 units was observed relative to the CEST-Dixon approach at a FF of 10% (Fig 2I). The CEST-Dixon acquisition demonstrated robust fat correction up to a FF of 20% in the patient data (Fig 2J), yielding physiologically consistent pH maps.

CEST-Dixon proved the most robust fat correction strategy, yet its multi-echo acquisition increases scan time (6min50) compared to a single-TE protocols (3min25) [5]. When acquisition time is a constraint, IP TE should be preferred over OP when fat correction is needed. A residual acquisition-related artifact remains at muscle borders across all methods, to which IP-based pH fitting appears more sensitive compared to OP or CEST-Dixon approaches.

In certain neuromuscular diseases where pH variations are on the order of ~0.2 [1], it is crucial to ensure that the observed CEST-based pH shift does not originate from an artificial increase caused by fat contamination. CEST-Dixon provides the reliability required to distinguish pathological pH changes from fat-induced bias, making it the preferred approach for these applications.
Lucie RANNO-CHARRIER (BOURG LA REINE) , Valentin HENRIET , Benjamin MARTY , Pierre-Yves BAUDIN , Harmen REYNGOUDT
16:15 - 17:00 #54482 - P295 CEST-Dixon: an acquisition approach for fat-suppressed skeletal muscle CEST-MRI at 3 T.
P295 CEST-Dixon: an acquisition approach for fat-suppressed skeletal muscle CEST-MRI at 3 T.

Chemical exchange saturation transfer (CEST) MRI is a promising technique for high-resolution mapping of creatine (Cr), phosphocreatine (PCr), and pH in skeletal muscle [1-3]. Cr and PCr dynamics before, during and after exercise can be assessed using magnetization transfer ratio asymmetry (MTRasym). However, skeletal muscles contain intramuscular fat, with a saturation peak at −3.5 ppm which impacts the Z-spectra, even at low fat fraction (FF) values in healthy muscle [4]. In neuromuscular disorders, muscle FF can reach high value when disease progression is severe [5]. Here, we propose a 3-pt CEST-Dixon based acquisition to obtain fat-suppressed CEST images of skeletal muscle at 3 T.

Simulations| To assess the impact of increasing FF, Z-spectra were simulated with an analytical solution of Bloch-McConnell equations considering water, Cr and PCr as exchanging pools and a multi peak fat model as non-exchangeable spectral component [6]. Simulations were performed considering an in-phase relationship between water and fat signals. The fat fraction was varied from 0% to 100% with 1% increments, and MTRasym (MTRasym = Z(-Δω) – Z(Δω)) was computed at 2.0 ppm (Cr) and 2.6 ppm (PCr). MRI Acquisitions| One patient was scanned at rest (F, 56 y-o, FSHD) on a 3-T clinical Magnetom PrismaFIT system (Siemens Healthineers, Erlangen, Germany) using an 18-channel body RF coil combined with a 32-channel posterior receive coil. A 3-pt VIBE sequence with a pulsed CEST preparation module (CEST-Dixon) was acquired at 41 frequency offsets regularly spaced between -4 ppm and 4 ppm, centered on the water frequency. M0 images were acquired at -300 ppm. Saturation parameters: 6 rectangular pulses of 99ms, duty cycle = 99 %, B1 = 1.0 µT. The sequence was acquired at three TEs, with the following parameters: TR/TE1/ΔTE = 5.0/1.23/1.23 ms, flip angle (FA) = 3°, 16 slices (5 mm), acceleration factor = 4 (CAIPIRINHA), bipolar gradients, 2 segments and spiral-out k-space ordering. As a reference for water-fat separation, a Dixon sequence [5], with three TEs (2.75/3.95/7.55 ms) was performed. In-plane spatial resolution was 1.4 × 1.4 mm² for both acquisitions. Data processing | For water/fat separation, both CEST-Dixon and Dixon data were processed using an in-house Python pipeline based on a multi-peak fat model, yielding water, fat, FF, R2* and ΔB0 maps [5,6]. For CEST-Dixon, ΔB0 (noted ΔB0 CEST-Dixon) and phase corrections were derived from M0 images and applied to all frequency offsets for water/fat separation. CEST-Dixon images were normalized to M0 and corrected using an internal ΔB0 map derived from the spline-smoothed Z-spectrum minimum (noted ΔB0 CEST). The TE2 (water and fat signal in phase) images were similarly normalized and B0-corrected. We compared MTRasym at 2.0 ppm and 2.6 ppm between the CEST-Dixon water images and the TE2 images. Analysis | Fifteen square regions of interest (ROIs) per slice (total: 240 ROIs), including fatty-replaced muscle, preserved muscles, subcutaneous fat and bone, were manually drawn on the CEST-Dixon FF map and interpolated to Dixon FF map. Ten ROIs per slice (total: 160 ROIs) were manually drawn on the ΔB0 CEST-Dixon map and interpolated to the ΔB0 CEST map and MTRasym maps (2.0 and 2.6 ppm) from both CEST-Dixon water images and TE2 images. Pearson correlation (R²) and Bland–Altman analysis were used to compare ΔB0 and FF values from CEST-Dixon and reference maps, and MTRasym between CEST-Dixon water images and TE2 images.

Simulations demonstrated that MTRasym at 2.0 and 2.6 ppm is impacted by FF, with a stronger effect observed for PCr (Fig.1). In vivo, FF values showed excellent agreement between CEST-Dixon and Dixon (R² = 0.99, Fig. 2A-C). The ΔB0 CEST-Dixon map strongly correlates with the ΔB0 CEST map (R² = 0.99, Fig. 2D-E), although a systematic bias of 0.06 ppm was observed (Fig. 2F). As shown in Fig. 3, water-fat separation enabled the generation of fat-free Z-spectra from water maps and fat-specific Z-spectra from fat maps. Consequently, Cr and PCr MTRasym maps derived from CEST-Dixon water images showed no correlation with FF (R² < 0.02 for both), whereas those derived from TE2 images exhibited a moderate correlation with FF (R² = 0.32 and R² = 0.46, respectively). This correlation was stronger for PCr than Cr, in agreement with the simulations (Fig. 4A-C).

The proposed CEST-Dixon approach provides reliable FF and ΔB0 values in good agreement with reference methods. Due to the small bias between the ΔB0 CEST-Dixon and the ΔB0 CEST, the latter was used for B0 correction. The method effectively separates water and fat contributions, enabling extraction of fat-free Z-spectra. As a result, Cr and PCr MTRasym decorrelate from FF when using the Dixon processing.

These findings highlight the importance of accounting for fat in skeletal muscle CEST-MRI, even at low FF, and demonstrate the strong potential of the proposed approach for clinical applications.
Valentin HENRIET (Paris) , Marc LAPERT , Lucie RANNO-CHARRIER , Benjamin MARTY , Pierre-Yves BAUDIN , Harmen REYNGOUDT
16:15 - 17:00 #54679 - P296 Repeatability and reproducibility study of APTw-CEST on the same multi-compartment BSA phantom: comparison of 2D and 3D techniques across single- and multi- 3T clinical MRI scanners.
P296 Repeatability and reproducibility study of APTw-CEST on the same multi-compartment BSA phantom: comparison of 2D and 3D techniques across single- and multi- 3T clinical MRI scanners.

APTw-CEST is a sensitive molecular MRI technique generating contrast from chemical exchange between water protons and exchangeable amide protons [1]. It has shown potential for several oncological applications but remains sensitive to acquisition parameters and scanner-specific implementations, limiting standardization and clinical implementation. Recently, Zhou et al. proposed a standardized acquisition protocols for brain tumours [3]. This preliminary phantom study aimed to assess the repeatability of 2D and 3D APTw-CEST sequences by comparing both intra-machine (2D versus 3D) and inter-machine (3D across two 3T MRI systems) acquisitions.

The phantom consisted of 12 tubes inserted into a cylindrical saline-filled container. Liquid (BSA in PBS, GdDOTA doped) and semi-solid (BSA in 2% agar/PBS) samples were prepared at physiological concentrations (8%, 10%, 12%) [4,5] at pH7. T1 were approximately 1200 ms. T2 were approximately 240 ms (liquid samples) and 100 ms (semi-solid samples). The phantom temperature was maintained close to physiological temperature. Acquisitions were performed on 3T GE HealthCare Signa Premier and 3T Siemens Healthineers MAGNETOM VIDA MR scanners, using 48ch head coil and 20ch head and neck coil, respectively. On the 3T GEHC system, data were acquired using 2D SSFSE with deep learning option (AIRTM Recon DL) activated for image reconstruction and 3D FSE CUBE with ARC acceleration. On the 3T Siemens Healthineers system, data were acquired using a 3D snapshot GRE (C2P-MP054 Sequence) with GRAPPA acceleration. On the GEHC system, B0/B1 mappings were performed using a 2D/3D two-echo-Gradient-echo (GRE) and a 2D SPGR Bloch-Siegert technique, respectively, while a WASABI protocol was used on the Siemens Healthineers system. Detailed acquisition parameters are summarized in Table 1. For repeatability assessment, 5 acquisitions were performed for each offset number with the phantom reinstalled before each scan. Acquisition data were post-processed using Olea Sphere V3.0 (Olea Medical, France). B0 heterogeneity correction was performed using a GRE B0 map on the GEHC system and WASABI on the Siemens Healthineers system. MTRasym values were calculated from B0-corrected Z-spectra over the ± 3-4 ppm region. VOIs were placed at the center of each tube. Repeatability was assessed using Coefficient of Variation (CVrep) across the five repeated acquisitions. MTRasym comparisons were performed between 2D SSFSE and 3D FSE CUBE CEST acquisitions, and between 3D FSE CUBE and 3D Snapshot GRE CEST acquisitions. Analyses were conducted separately for liquid and semi-solid samples across the 5 repeated scans using paired Student’s t-tests and Bland-Altman analyses. Statistical significance was set at p < 0.05. The normality of paired differences was assessed using the Shapiro-Wilk test. Due to the absence of B1 correction, only the four central tubes with small relative B1 variations were included in the inter-machine comparisons.

MTRasym values ranged from 4.36% to 9.61% for liquid samples, and 1.52% to 7.93% for semi-solid samples. Comparisons between 2D SSFSE and 3D FSE CUBE APTw-CEST revealed a significant difference in MTRasym values for both liquid and semi-solid samples. Bland-Altman analysis showed mean differences (bias) of -1.62 % and 0.88 %, with 95 % limits of agreement ranging from –3.84% to 0.25% and -1.09% to 2.85% in liquid and semi-solid samples, respectively (Figure 1). Comparisons between 3D FSE CUBE and 3D Snapshot GRE APTw-CEST showed a significant difference in MTRasym values for semi-solid samples. No significant difference was found for liquid samples. Bland-Altman analysis showed mean differences (bias) of 0.32 % and -1.66 %, with 95 % limits of agreement ranging from –1.13% to 1.77% and -4% to 0.69% in liquid and semi-solid samples, respectively (Figure 2). Repeatability analysis showed mean CVrep values of 9%, 3% and 9% in liquid samples for 2D SSFSE, 3D FSE CUBE and 3D snapshot GRE APTw-CEST sequences, respectively. In semi-solid samples, mean CVrep values were 5% for 3 sequences.

All acquisitions were performed on the same phantom during the same imaging session. Despite identical saturation parameters, significant differences were observed between 2D SSFSE and 3D FSE CUBE acquisitions, potentially due to readout-related effects on magnetization state. No inter-machine differences were observed in liquid samples. However, the differences observed in semi-solid samples, which better reflect physiological conditions due to the contribution of magnetization transfer (MT) effects, suggest that further optimization of acquisition parameters and readout techniques may improve inter-machine reproducibility. Nevertheless, all three sequences demonstrated good repeatability.

This preliminary phantom study demonstrated good repeatability of APTw-CEST sequences on 3T MRI systems. Further optimization of acquisition parameters and readout techniques may improve inter-machine reproducibility.
Lecong WEI (Villejuif) , Yao-Nhon CHANG , Andreas VOLK , Sophie CAMPANA TREMBLAY , Julie POUJOL , Lucie CALMELS , Samy AMMARI , Gabriel GARCIA , Sebastien DIFFETOCQ , Tite MOKOYOKO , Caroline ESSER , Corinne BALLEYGUIER , Nathalie LASSAU , François BIDAULT
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A15
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HOT TOPIC DEBATE
MRI in the Age of Data: Less is More?

Keynote Speakers: Matthias GÜNTHER (Keynote Speaker, Bremen, Germany), Wietske VAN DER ZWAAG (Keynote Speaker, The Netherlands)
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Friday 02 October
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B20
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FT3-2 - Quantitative and Synthetic MRI
Methods, Models, and Applications

FT Machines
08:15 - 08:35 Model-based MRI, MRF and synthetic MRI. Rasim BOYACIOGLU (Keynote Speaker, USA)
08:35 - 08:55 Standardization and Harmonization in Quantitative MRI: The Role of MR Fingerprinting and Open-Source Frameworks. Maximilan GRAM (Postdoctoral Researcher) (Keynote Speaker, Würzburg, Germany)
08:55 - 09:15 Translational qMRI: From Validation to Clinical Usage. Christian LANGKAMMER (PhD) (Keynote Speaker, Graz, Austria)
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FT1-2 - Towards a New Era in Predictive Medicine

FT Society
08:15 - 08:35 How Predictive Medicine Redefines Your Future. Soetkin BEUN (Researcher) (Keynote Speaker, Ghent, Belgium)
08:35 - 08:55 When MRI Starts Predicting Your Future. Gennady ROSHCHUPKIN (Keynote Speaker, The Netherlands)
08:55 - 09:15 Self‑Scanned: The Next Step in Predictive Imaging. Udunna ANAZODO (Keynote Speaker, Canada)
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FT2-2 - Multimodal and Hybrid Imaging
Technological Innovations and Clinical Impact

FT Clinical
08:15 - 08:35 Multimodal Imaging for Epilepsy Surgery. Louis LEMIEUX (Keynote Speaker, United Kingdom)
08:35 - 08:55 MRI-Guided Radiotherapy Systems for Personalized Cancer Treatment. Bas RAAIJMAKERS (prof experimental clinical physics) (Keynote Speaker, Utrecht, The Netherlands)
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E20
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ET1-1 - Building Together: MRI Systems

ET Research
08:15 - 08:35 Magnet Imperfections: Trade-Offs and Solutions. Teresa GUALLART NAVAL (Speaker, Valencia, Spain)
08:35 - 08:55 Rethinking RF Design: Practical Tricks and Tips. Shao Ying HUANG (Speaker, Singapore)
08:55 - 09:15 PNS, Vibrations, and Gradients: How Fast Is Too Fast? Sebastian LITTIN (Group Leader) (Speaker, Freiburg, Germany)
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FT2-1 Plenary - Low-field vs. High-field MRI
in Future Clinical Practice

FT Clinical
09:30 - 10:00 The Case for Low-Field MRI in Future Clinical Practice. Joseba ALONSO (Lead scientist) (Keynote Speaker, Valencia, Spain)
10:00 - 10:30 The Case for High/ Ultra-high field MRI in Future Clinical Practice. Gilbert HANGEL (Principal Investigator) (Keynote Speaker, Vienna, Austria)
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OA2-1 Scientific session
Brain Biomarkers in Clinical Cohorts

10:45 - 10:57 #54173 - PG014 Reduced cerebrovascular reactivity is associated with cognitive impairment in patients with internal carotid artery stenosis.
PG014 Reduced cerebrovascular reactivity is associated with cognitive impairment in patients with internal carotid artery stenosis.

Internal carotid artery stenosis (ICAS) is a risk factor for ischemic stroke [1] and has been associated with cognitive decline [2]. In particular, watershed areas (WSA) at the border zones between vascular territories are prone to hemodynamic insufficiencies [3, 4]. In these regions, cerebrovascular reactivity (CVR) is a promising indicator of vascular health and describes the capacity of the cerebral vasculature to dilate in response to vasoactive stimuli [5].Therefore, the presented prospective cohort study examines the association between CVR in individual WSA (iWSA) and cognition in asymptomatic ICAS.

We analyzed data from 54 participants of an ongoing study, including 18 patients with asymptomatic unilateral ICAS (68.6±9.24y, 7f, NASCET≥50% [6]) and 36 age-matched healthy controls (HC; 70.35±7.99y, 17f). All participants underwent MRI on a 3T (Philips Ingenia Elition X). CVR was assessed using blood-oxygenation-sensitive MRI acquired during a hypercapnia challenge, administered via a sealed face mask with end-tidal gas monitoring (Fig. 1). Postprocessing was performed using SPM12 and custom MATLAB scripts (v2025b). CVR was calculated as percent differences between air and 5% CO₂ and normalized by corresponding end-tidal CO₂ change. For further analysis, CVR values were extracted from gray matter (GM, pGM>0.8) within and outside subject-specific iWSA, which were manually delineated based on time-to-peak maps from DSC-MRI [4]. Cognitive performance was assessed using the CERAD-Plus battery and summarized into 6 domains following Maass et al. [7] covering global cognition, language, verbal memory, processing speed, visuospatial, and executive function. All cognitive measures were expressed as z-scores adjusted for age, sex, and education. Statistical analyses used Wilcoxon signed-rank and Mann-Whitney U tests for paired and unpaired comparisons and Spearman correlations between CVR and cognitive z-scores(p<0.05).

In both gropus, CVR was significantly reduced within vs. outside iWSA (p<0.001;Fig.3C,F). In ICAS, CVR was significantly impaired inside iWSA ipsilateral to the stenosis (p=0.02;Fig.3A), whereas no hemispheric differences were observed outside iWSA (Fig. 3B) or in HC (Fig.3D–E). ICAS showed a trend towards lateralization within iWSA (Fig.3H), while no lateralization was observed outside iWSA and in HC (Fig.3H,K). Regarding correlations of CVR with cognition within iWSA, our asymptomatic ICAS patients show a trend for significance for global cognition (Fig.4A) as well as language performance (Fig.4B). Verbal memory showed a non-significant trend in both groups (Fig.4C,I), whereas no associations were found for other cognitive domains (Fig.4D-F, J-L).

We demonstrated that in asymptomatic ICAS, CVR is significantly reduced within iWSA ipsilateral to the stenosis. This is consistent with the notion that watershed areas are particularly vulnerable to hemodynamic insufficiency [3, 4]. In addition, CVR differed significantly between GM inside and outside iWSA which confirms previous results [4]. This difference was observed in ICAS as well as HC, suggesting intrinsic vulnerability of WSAs due to their distal location at the border of vascular territories [3], potentially requiring compensatory vasodilation to maintain oxygenation [8], and supporting iWSA as a sensitive marker of ICAS-related hemodynamic alterations [9].We further observed CVR lateralization in ICAS but not in HC (Fig.3G) which is likewise consistent with previous findings, in particular with respect to strongest effects within iWSA [4]. Considering these subclinical hemodynamic differences, we further explored the relationship between CVR and cognition within iWSA. In ICAS, we observed a trend of reduced CVR being associated with global cognitive decline and poorer language performance. These trends align with previous studies implicating reduced CVR with cognitive impairment [10]. Consistent with prior work, impaired CVR was not associated with executive function [11]. A trend towards an association with verbal memory in HC (Fig.4I) may be related to vascular comorbidities in this group. However, given our limited sample size, we cannot discern whether the lack of significance results from insufficient statistical power or missing effects. In addition, this preliminary analysis does not yet consider the specific cortical representations of different functional domains. While our study is ongoing and collecting more patient data, future analyses need to incorporate the functional organization of the cortex to capture region-specific effects.

In ICAS, CVR is reduced within iWSA, particularly ipsilateral to the stenosis, and shows a trend-level association with cognition. Although these preliminary findings require confirmation in larger cohorts, they highlight the vulnerability of WSAs and support CVR as a marker of hemodynamic impairment and cognitive decline.
Tim BITTER (Munich, Germany) , Christine PREIBISCH , Julia TEN PAS , Cornelius BERBERICH , Pleimelding CLAIRE , Barbara ANDRASSY-RANTNER , Daniela BRANZAN , Jan KIRSCHKE , Stephan KACZMARZ , Jens GÖTTLER , Lena SCHMITZER , Gabriel HOFFMANN
10:57 - 11:09 #54585 - PG015 Early and Persistent Choroid Plexus Enlargement in Parkinson's Disease: An MRI Study Across the Cognitive Spectrum.
PG015 Early and Persistent Choroid Plexus Enlargement in Parkinson's Disease: An MRI Study Across the Cognitive Spectrum.

Parkinson's disease (PD) is a progressive neurodegenerative disorder caused by the gradual loss of dopaminergic cells in the midbrain. PD primarily affects motor functions, often accompanied by cognitive impairments leading to dementia (PDD). The choroid plexus (CP) forms the blood-cerebrospinal fluid barrier (BCSFB) and is thought to drive glymphatic clearance and neuroinflammatory processes as a source of immune cell migration. CP hypertrophy has been associated with motor symptoms and dopamine loss in PD [1]; possibly through its role in brain clearance in early-stage disease[2]. This study aims to investigate whether structural CP alterations occur as an early pathophysiological feature or scale progressively with cognitive decline, and to assess their relationship with generalized ventricular expansion.

This preliminary study included 40 subjects: 10 healthy controls (HC; age 54.6±4.4, 6M/4F) and 30 PD patients stratified by cognitive status (10 normal cognition [PD-N; age 57.0±8.7, 8M/2F], 10 mild cognitive impairment [PD-MCI; age 60.4±8.9, 9M/1F, ], and 10 dementia [PDD; age 70.3±5.7, 7M/3F]). Participants underwent a cognitive and psychological test battery including the Geriatric Depression Scale, Addenbrooke’s Cognitive Examination (ACE-R), Mini-Mental State Examination (MMSE), Montreal Cognitive Assessment (MoCA), Judgment of Line Orientation, Symbol Digit Modalities Test, and Stroop test. High-resolution T1-weighted images were acquired on a 3T clinical MRI scanner (Philips Medical Systems, Best, The Netherlands) using a 3D turbo field echo (TFE) sequence (TR=8.53 ms, TE=3.94 ms, FA=8°, voxel size=0.98×0.98×1.0 mm , slice thickness=1 mm, acquisition time≈5.9 min). T1-weighted images were manually segmented using 3D Slicer software to obtain lateral ventricular CP volumes, following the protocol described previously [3]. The lateral ventricle CPs were delineated on the axial plane using the trigonum collaterale as the primary anatomical reference within the Segment Editor module. Coronal and sagittal planes were additionally inspected. Whole-brain segmentation was performed using the vol2Brain algorithm [4] implemented on the volBrain open-access platform (https://www.volbrain.net). From the generated report, total intracranial (ICV), GM and WM, total CSF, and lateral ventricle (LV) volumes were extracted for subsequent analyses. Statistical analyses were performed using Python 3.11. To differentiate absolute CP hypertrophy from generalized ex vacuo expansion, CP volumes were evaluated using two normalization models: CP/ICV and CP/LV. Group differences were assessed via ANCOVA (covariates: age, biological sex, years of schooling), followed by False Discovery Rate (FDR) corrected post-hoc tests. Structural associations with standardized cognitive domains (e.g., ACE-R, SDMT) were assessed via multiple linear regression.

ANCOVA revealed a statistically significant main effect of group on CP/ICV volumes (F(3,33)=4.125,p=0.014). Post-hoc FDR-corrected comparisons demonstrated that CP volumes were significantly elevated in the combined early-stage groups (PD-N and PD-MCI) as well as the PDD group relative to healthy controls. Notably, CP/ICV volumes did not differ significantly between the PD subgroups (e.g., PD-N vs. PDD, p=0.628), indicating that expansion plateaus early in the disease course (Fig.1). When CP volume was normalized directly to the lateral ventricles (CP/LV), the significant between-group differences completely disappeared (F(3,33)=0.692,p=0.564). Unadjusted Pearson correlations confirmed a strong positive coupling between CP/ICV and LV/ICV expansion (r=0.523,p<0.05)(Fig.2). Multiple linear regression models revealed that neither CP/ICV nor CP/LV ratios were significantly associated with any specific cognitive test score after FDR correction (all p FDR>0.68) (Fig.3).

Our results demonstrate that choroid plexus enlargement is present prior to the onset of objective cognitive decline and remains stable through the dementia stage, showing no correlation with neuropsychological test performance. In addition, CP hypertrophy seems to scale proportionately with generalized ventricular expansion. CP enlargement likely represents a core, early pathophysiological mechanism; potentially tied to initial glymphatic failure and altered CSF dynamics[2] rather than a marker of cognitive severity. Methodologically, future volumetric studies must carefully consider normalization strategies (e.g., ICV vs. lateral ventricles) for correct interpretation of choroid plexus alterations.

Choroid plexus enlargement is an early and persistent structural neuroimaging biomarker in Parkinson’s disease.
Meltem KARATAS (Istanbul, Turkey) , Sevim CENGIZ , Dilek Betul ARSLAN , Ani KICIK , Emel ERDOGDU , Basar BILGIC , Hasmet A HANAGASI , Tamer DEMIRALP , Hakan GURVIT , Esin OZTURK ISIK
11:09 - 11:21 #53817 - PG016 Serum Neurofilament Light Chain and GFAP Levels Are Associated with Structural Brain Connectivity in Parkinson’s Disease.
PG016 Serum Neurofilament Light Chain and GFAP Levels Are Associated with Structural Brain Connectivity in Parkinson’s Disease.

Parkinson’s disease (PD) is a progressive neurodegenerative disorder [1] characterized by motor and non-motor symptoms associated with widespread alterations of brain networks. Circulating biomarkers such as neurofilament light chain (NfL) and glial fibrillary acidic protein (GFAP) reflect neuroaxonal damage and astroglial activation, respectively [2], but their relationship with large-scale structural brain connectivity remains poorly understood. Aim of this study was to investigate the association between NfL and GFAP levels and graph-theoretical metrics of structural brain networks derived from diffusion-weighted images (DWI). We analyzed global and nodal graph-theoretical measures obtained from connectomes reconstructed using the microstructure-informed tractography framework COMMIT2 [3,4] in PD patients and healthy controls (HC). By integrating blood biomarkers with advanced connectomic measures, this study sought to provide novel insights into the relationship between molecular markers of neurodegeneration and white matter network alterations in PD.

Seventy-three patients with PD and 34 age-matched HC were enrolled. PD diagnosis was established according to the Movement Disorder Society (MDS) international diagnostic criteria [1]. Brain MRI was acquired on a 3T scanner (Biograph mMR, Siemens Healthineers, Forchheim, Germany). Serum samples were collected and analyzed for NfL and GFAP concentrations using ultrasensitive single molecule array (SIMOA) technology [5]. Structural T1-weighted images were processed using the FreeSurfer pipeline to obtain cortical and subcortical parcellation maps based on the Desikan–Killiany atlas [6]. DWI data were processed using the TractoFlow pipeline [7], including denoising, correction for eddy currents and susceptibility distortions, bias field correction, and anatomically constrained tractography. Whole-brain tractography was filtered using the COMMIT2 framework to improve biological plausibility and reduce false-positive streamlines [4]. Weighted structural connectomes, including 85 cortical and subcortical regions, were generated for each subjects. Global metrics included mean strength, clustering coefficient, global efficiency, characteristic path length, and modularity, while nodal metrics included local strength, local clustering coefficient, local efficiency, and betweenness centrality. Group comparisons and partial spearman correlation analyses between biomarkers and network measures were performed controlling for age and sex, with false discovery rate (FDR) correction for multiple comparisons.

Compared to HC, PD patients showed significant alterations of global network organization, including reduced mean strength and global efficiency, together with increased characteristic path length and modularity, indicating a shift toward a less integrated and more segregated network architecture (Table 1). At the nodal level, PD patients exhibited widespread reductions in network measures involving bilateral thalami, hippocampi, caudate nuclei, putamen, cerebellar cortex, brainstem, amygdala, insula, and frontal and temporal cortical regions (Figure 1). Higher serum NfL and GFAP levels were significantly associated with lower global clustering coefficient and global efficiency, as well as higher path length and modularity (Figure 2). At the regional level, increased biomarker concentrations correlated with reduced local strength and betweenness centrality in the right thalamus (Figure 3). In the right cerebellar cortex, higher NfL levels were associated with lower local clustering coefficient and local efficiency (Figure 4).

These findings suggest that neuroaxonal degeneration and astrocytic activation contribute through distinct but complementary mechanisms to structural network disorganization in PD [8-10]. NfL appears to primarily reflect axonal injury and large-scale structural disconnection, whereas GFAP may capture astrocyte-mediated neuroinflammatory and network reorganization processes. The thalamus emerged as a particularly vulnerable hub linking molecular and connectomic alterations, supporting its central role in cortico-basal ganglia-thalamo-cortical dysfunction in PD [11-12]. The integration of connectomic metrics with blood-based biomarkers may therefore improve the characterization of disease-related network alterations and provide a multimodal framework for monitoring neurodegeneration.

The combined assessment of serum biomarkers and diffusion MRI connectomics provides novel insights into the mechanisms underlying structural brain network disruption in PD. Integrating blood-based molecular markers with advanced connectomic approaches may represent a promising strategy for identifying clinically relevant markers of network vulnerability, disease progression, and potential therapeutic targets in PD.
Maria Celeste BONACCI (Catanzaro, Italy) , Jolanda BUONOCORE , Camilla CALOMINO , Maria Giovanna BIANCO , Matteo BATTOCCHIO , Pietro BONTEMPI , Alessandro DADUCCI , Costanza Maria CRISTIANI , Aldo QUATTRONE , Maria Eugenia CALIGIURI , Andrea QUATTRONE
11:21 - 11:33 #53503 - PG017 CEST MRI-Derived Metabolic Signatures in Alzheimer’s Disease: Comparison with FDG-PET.
PG017 CEST MRI-Derived Metabolic Signatures in Alzheimer’s Disease: Comparison with FDG-PET.

Alzheimer’s disease (AD) is a progressive neurodegenerative disorder characterized by amyloid-β deposition, tau pathology, and neuronal/synaptic dysfunction reflected by glucose hypometabolism in Fluorodeoxyglucose (FDG) positron emission tomography (PET) [1]. This imaging modality is relatively invasive due to the use of radioactive tracers and is sometimes difficult to access. Chemical Exchange Saturation Transfer (CEST) MRI could offer a non-invasive alternative for metabolic imaging. This study explores the potential of CEST MRI as a noninvasive imaging tool for detecting metabolic changes associated with neurodegeneration in AD, compared to FDG-PET.

Forty-five participants were included: 16 healthy young (HY, 29±6 years), 20 healthy older (HO, 67±6 years), and 9 patients with an AD diagnosis based on clinical-biological criteria (69±10 years). All participants provided written informed consent. MRI acquisitions were performed at 7T using a Nova radiofrequency coil (8Tx/32Rx) and included CEST acquisitions and T1 mapping. Universal parallel-transmission CEST pulses were designed as previously described [2]. A 5-slice oblique slab was acquired in the precuneus/visual cortex with 3.4x3.4x4 mm3 resolution. Data was corrected for motion, distortions (Topup), and B0 inhomogeneity (WASSR). Hydroxyl-weighted and rNOE-enhanced maps were computed using the AREX metric, and pH-enhanced maps were derived following [3]. Acquisition parameters are listed in Table 1. PET imaging was performed on a hybrid PET/MR (3T) system under continuous infusion of [¹⁸F]FDG with 1.2x1.2x2.8 mm3 resolution. Standardized Uptake Value Ratio (SUVR) maps were normalized to the pons. Statistical analysis used permutation-based ANOVA on a linear mixed model (group, region as fixed effects). Post-hoc pairwise comparisons were Bonferroni-corrected.

FDG-PET revealed significantly lower uptake in AD compared to HO and HY, especially in the precuneus, parietal, and supramarginal regions (all p<0.05; Fig. 2A). Although hydroxyl-w CEST did not significantly differentiate AD from HO (p=0.83; ROC analysis AUC=0.61, 95% CI 0.54–0.68), regional CEST trends followed a pattern consistent with FDG-PET hypometabolism (Fig. 2B). Moderate positive correlations were found between FDG uptake and hydroxyl-w CEST across the regions showing significant PET abnormalities, and in the cuneus (all p<0.05, Figs. 2C–D). Age-related correlations with hydroxyl-w CEST were absent across all ROIs, except in the pericalcarine (r=-0.59, p=0.047), when restricted to cognitively normal participants. rNOE contrast was significantly reduced in AD vs HO, all regions considered (p<0.001) and demonstrated stronger discriminative ability than hydroxyl-w CEST (ROC analysis AUC=0.71, 95% CI 0.65–0.78). Moderate age-related decreases in white matter (WM) were also observed (r=-0.53, p=0.002; Fig. 3A). pH-enhanced maps showed no significant group effect (p=0.4), although higher median values were overall observed in the AD group compared to HO (Fig. 3B). Representative images from each group are shown in Fig. 4.

Hydroxyl-w CEST signals, although not significant, were consistently lower in AD compared to both HO and HY, in agreement with the characteristic glucose hypometabolism in AD [4], as observed with FDG-PET. Hydroxyl-w CEST and FDG-PET were correlated in the precuneus and parietal regions, which are known to be among the earliest affected regions in AD. Hydroxyl-w CEST captures a broader metabolic signature than FDG-PET, including glucose, myo-inositol and glycosaminoglycans. This multi-metabolite sensitivity may reflect AD-specific pathophysiological changes beyond glucose metabolism, positioning it as a complementary, radiation-free biomarker. rNOE-enhanced contrast showed stronger discriminative capability, showing significantly reduced CEST values in AD compared to HO. The rNOE effect being sensitive to mobile macromolecules and membrane lipids, its reduction in AD may reflect myelin degradation, which may contribute to the alteration of white matter tracts described in AD [5]. Moderate age-related decline in rNOE was also observed in WM, suggesting that neurodegenerative and normal aging processes are both captured with this contrast. The lack of a significant group effect in the pH-enhanced contrast likely indicates limited sensitivity to subtle tissue changes in AD. However, the trend toward higher values in AD is consistent with known neuroinflammation and acidification [6]: acidosis reduces amide exchange (APT) while increasing guanidinium exchange, thereby increasing our pH-enhanced measure. Future CEST studies with larger cohorts, higher resolution, and focusing on more severely affected regions such as the hippocampus may better capture AD-related effects.

CEST MRI detects complementary metabolic changes in AD but is less sensitive and specific than FDG-PET. Still, its multiparametric and non-invasive nature makes it a promising tool for studying AD pathophysiology.
Camélia RESSAM (Paris) , Thaddée DELEBARRE , Mathis PHAN , Albertine DUBOIS , Michel BOTTLAENDER , Julien LAGARDE , Luisa CIOBANU
11:33 - 11:45 #54459 - PG018 Altered association between grey matter microstructural characteristics and cerebral oxidative metabolism in Multiple Sclerosis.
PG018 Altered association between grey matter microstructural characteristics and cerebral oxidative metabolism in Multiple Sclerosis.

Brain grey matter (GM) is a dense, intricate network of unmyelinated axons, dendrites, synapses and glial cell processes. Invasive animal studies have suggested an association between GM metabolic demands and its microstructural features [1]. Diffusion-weighted Magnetic Resonance Imaging (DW-MRI) and advanced signal modelling now enable in vivo probing of GM microstructure [2], while breath-hold (BH)-calibrated fMRI can estimate cerebral metabolic rate of oxygen consumption (CMRO2) [3]. Recent evidence showed that healthy human brain GM microstructure is associated with oxidative metabolism [4]. Here, we tested noninvasively whether such association was altered in Multiple Sclerosis (MS).

Twenty-nine MS patients (age=39.5±9.3 yrs; 20F/9M) and 24 healthy controls (HC; age=36.2±5.6 yrs; 9F/15M) undertook MRI (3 T Siemens Prisma, 32-channel head coil). MS patients had a median Expanded Disability Status Scale [5] of 2 (range=0-5.5) and a median disease duration=9 yrs (range=1-38). The MRI protocol is shown in Fig.1 and Table1. A BH-calibrated dual-excitation pCASL (DEXI) sequence [8,9] was used for CMRO2 quantification, and multi-band DWI for Soma And Neurite Density Imaging (SANDI) model [2,10]. Image preprocessing, segmentation, coregistration and normalization to the standard MNI152 space [11] were performed with FSL, MRTrix3, ANTs [12-14]. DEXI images were motion corrected and despiked. CMRO2 was quantified by inverting a modified Davis model [3]. DWI images were denoised, corrected for Gibbs ringing artifact, susceptibility and eddy-currents [12,13]. SANDI model fitting yielded the signal fraction of soma and neurites (fsoma, fneurite) and the average cellular size (Rsoma). CMRO2 and SANDI-derived parametric maps were analysed in the subject’s native space, adapting the GM parcellation to the DEXI and the diffusion space. The GM-partial volume estimate (pve) map was thresholded at 50% to define GM, and 132 GM regions of interest (ROIs) including cortical, subcortical and cerebellum were selected based on the Harvard-Oxford atlas [15]. Voxels were averaged within each ROI and then across subjects. Between group-differences in the GM microstructural parameters and oxidative metabolism were assessed using two-tailed Welch test. Linear models were fitted with Y=CMRO2, X=fsoma, fneurite or Rsoma, mean white matter(WM)-pve and cerebrospinal fluid(CSF)-pve as covariates (to account for residual partial volume contamination in the diffusion metrics), group (HC/MS) as a factor, and a group-by-X interaction term (HC: reference group). A p-value<0.05 was considered significant. Parameter extraction and statistical analysis were performed in MATLAB [16].

Group-average maps suggested reduced oxidative metabolism in the MS group, compared to the HC (Fig.2): in GM, the average CMRO2 was significantly lower in MS (HC: median and interquartile range [IQR]=144.5 (126.9,160.6) µmolO2/100g/min; MS: 130.9 (118.6,146.5); p<0.0001). No global group differences were observed in diffusion-derived GM microstructural metrics. Fig.3 illustrates the strongest association between CMRO2 and the microstructural metrics, across GM ROIs (each marker represents the mean across subjects for one region). In HC there was a significant positive association between CMRO2 and fsoma (regression coefficient β=0.498, p<0.0001), which was weaker in the MS group (difference in β: p=0.051). Moreover, CMRO2 was negatively associated with fneurite in HC (β=-0.380, p<0.0001). This association was significantly weaker in the MS group (the two β differed with p=0.038). Finally, CMRO2 was positively related to Rsoma in HC (β =0.428, p<0.0001), while in MS the association was lower (β=0.240, p=0.089).

The GM oxidative metabolism was significantly lower in MS compared to HC, in agreement with literature [17]. The associations between CMRO2 and microstructural metrics in the GM of healthy volunteers are consistent with previous evidence in animal models [1] and humans [4]. CMRO2 was positively related to fsoma and Rsoma across GM, together indicating that regions with a larger signal fraction of cells and larger soma size demand more energy. However, such associations were weaker in the MS group (not significantly for Rsoma, showing a trend for fsoma, reaching significance for fneurite), potentially reflecting neurodegenerative, neuroinflammatory, neuroenergetic and neurovascular alterations in MS. The negative association between CMRO2 and fneurite could be a relative compartment effect [2]. The absence of global diffusion-derived group differences may reflect heterogeneous cortical pathology [18].

Our study showed for the first time that the microstructure–metabolism relationships found in healthy GM are altered in MS.
Alessandra S CAPORALE (Chieti-Pescara, Italy) , Elizabeth J FEAR , Davide DI CENSO , Manuela CARRIERO , Francesca GRAZIANO , Antonio M CHIARELLI , Emilio CIPRIANO , Mauro COSTAGLI , Matilde INGLESE , Valentina TOMASSINI , Richard G WISE
Sala Simfònica

"Friday 02 October"

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B22
10:45 - 12:00

LTB2-1 Scientific session
Building MRI for 2050: Open, Reproducible, and Accessible by Design

10:45 - 10:48 #54098 - PG088 Echoes Beyond the Scanner: Six Years of the ESMRMB Podcast.
PG088 Echoes Beyond the Scanner: Six Years of the ESMRMB Podcast.

Effective science communication is increasingly recognized as a critical component of responsible research practice, fostering transparency, enhancing public trust, and supporting reproducibility and collaboration across disciplines. Prior studies have shown that open access dissemination and targeted communication strategies can improve research rigor, democratize knowledge, and accelerate cross-border collaboration. In this spirit, the ESMRMB Early Career Researchers Committee launched the ESMRMB Podcast in 2020 to create an accessible and sustainable platform for the scientific community. This ongoing endeavor is entirely developed, hosted, and managed by early career researchers, with the overarching goals of enhancing knowledge exchange, fostering collaboration, and advocating for effective science communication. Additionally, the podcast aims to promote diversity in skillsets, academic backgrounds, career paths, and perspectives within the MR field. Here, we present a descriptive analysis of listener engagement, demographics, and global reach of the ESMRMB Podcast over a five-year period, highlighting the impact and value of this podcast for community-driven science communication.

A total of 31 episodes were recorded between October 2020 and April 2026 via Zoom and/or during ESMRMB Conferences with invited speakers, and edited using Apple iMovie. The program features content across a broad range of MR-relevant themes including MR technologies, clinical applications, career development, networking, grant writing, science communication, open access, international collaboration, sustainability, and diversity, equity, and inclusion. The podcasts were distributed through major platforms such as Apple Podcasts and Spotify. Listener analytics were collected and evaluated over six years, including engagement trends, demographics, geographic distribution, device and platform usage.

Listenership remained consistent, with peaks typically aligning with new episode releases (Figure 1). The majority of listeners were aged 23–44 (79.2%) and identified as male (50.8%), reflecting strong engagement from early-career professionals and researchers (Figure 2). The podcast reached a global audience, with top listener countries including the United States (28.2%), United Kingdom (13.8%), Germany (10.5%), the Netherlands (7.6%), and Japan (5.8%) (Figure 3). Multi-platform access (Figure 4) and Apple Podcast and Spotify emphasized the importance of cross-platform accessibility in science communication.

Our podcast series demonstrated consistently high listener engagement, providing an open and accessible platform for scientific exchange across the global MR community. The high engagement among young listeners—particularly in countries like the US, UK, Germany, the Netherlands, and Japan—may reflect both a generational shift in media consumption for knowledge and skills improvement and the presence of well-established MR research centers that foster curiosity and ongoing learning. Moving forward, we envision enhancing our recording quality using professional audio equipment, exploring multilingual episode formats, and integrating podcast interviews with conference abstracts and featured presenters to further amplify scientific dialogs.

Our podcast demonstrates the potential of audio-based communication to enrich education, inclusion, and collaboration in the field of MR.
Moss ZHAO , Sanam ASSILI (Belmont, USA) , Melanie BAUER , Patricia CLEMENT , Daniel HOINKISS , Ozlem IPEK , Joana PINTO , Hendrik MATTERN , Lena BEATRICE
10:48 - 10:51 #54278 - PG089 A Stage-Gated EU-MDR Translational Framework for Advanced MRI Pulse Sequence Development and Academic Dissemination.
PG089 A Stage-Gated EU-MDR Translational Framework for Advanced MRI Pulse Sequence Development and Academic Dissemination.

Advanced MRI pulse sequences developed in academic environments are increasingly complex, software-driven, and translationally relevant. However, practical guidance for aligning investigational pulse sequence development with the European Union Medical Device Regulation (EU-MDR 2017/745) remains limited, particularly when sequences are transferred between academic institutions. This work proposes a stage-gated translational framework for the development, validation, and inter-institutional sharing of advanced MRI pulse sequences using tensor-valued diffusion encoding as a representative high-complexity use case (1).

A translational governance framework was developed by mapping the lifecycle of advanced MRI pulse sequence development onto applicable EU-MDR principles and harmonized standards, including ISO 14971 (risk management), IEC 62304 (software lifecycle processes), IEC 60601-2-33 (MR equipment safety), and RF coil safety considerations associated with investigational MR hardware configurations. A spectral principal axis system (SPAS) tensor-valued diffusion sequence (1) implemented on a 3T MRI platform was used as an exemplar sequence to identify technical and regulatory requirements associated with preclinical and translational MRI research. Particular consideration was given to investigator-initiated clinical research workflows, institutional responsibilities under Article 5(5) of EU-MDR 2017/745, and clinical investigation requirements described in Article 62 for first-in-human investigational deployment. The framework was structured into 4 sequential stages: Stage 0: conceptual sequence design and simulation Stage 1: scanner-level technical validation Stage 2: preclinical animal deployment Stage 3: first-in-human investigational research use For each stage, required documentation, applicable General Safety and Performance Requirements (GSPRs), risk management activities, software lifecycle controls, and institutional governance requirements were identified.

The proposed framework defines stage-dependent regulatory and technical requirements for MRI pulse sequence research (Figure 1, Table1). At Stage 0, the sequence remains investigational research software with no clinical intended purpose, requiring only design documentation, version control, and preliminary hazard identification. Stage 1 introduces scanner-integrated technical validation including gradient duty-cycle assessment, RF power deposition and SAR verification, peripheral nerve stimulation analysis, RF coil compatibility assessment, phantom validation, and software traceability aligned with IEC 60601-2-33 and IEC 62304 principles. Stage 2 extends the framework to preclinical animal deployment with protocol governance, ethics approval, operational constraints, and formal ISO 14971-based risk analyses addressing thermal exposure, physiological instability, and acquisition failure modes. Stage 3 defines the transition toward human investigational use, introducing explicit intended-purpose definitions, GSPR applicability mapping (Figure 2), benefit-risk assessments, operator training requirements, cybersecurity and data-governance controls, incident reporting procedures, and controlled inter-institutional dissemination. The framework additionally identifies conditions under which investigator-initiated studies may transition from institutional in-house research activities under Article 5(5) toward formal clinical investigation pathways under Article 62 of EU-MDR.A proportional research-grade quality management system (QMS) was defined, including sequence versioning, validation reports, change-management procedures, scanner compatibility declarations, and standardized research-use-only transfer documentation to support multicenter reproducibility and traceability.

The proposed framework introduces a proportional and stage-dependent governance model intended to improve safety, traceability, reproducibility, and regulatory awareness during translational development. It highlights that risks associated with advanced pulse sequences may arise from gradient and RF exposure, investigational RF coil configurations, software lifecycle management, uncontrolled sequence modifications, multicenter deployment variability, cybersecurity considerations, and increasingly complex AI-assisted reconstruction or quantitative analysis pipelines. By integrating MDR principles, Article 5(5) institutional responsibilities, and investigational requirements with existing MRI research practices, the framework may facilitate safer inter-institutional collaboration while preserving the flexibility required for academic innovation.

Advanced MRI pulse sequences increasingly operate at the interface between exploratory research software and clinically relevant imaging technologies. The proposed framework provides a practical EU-MDR-aligned pathway for academic institutions to develop, validate, and disseminate complex MRI pulse sequences.
Nathalie JUST (Lausanne, Switzerland)
10:51 - 10:54 #54257 - PG090 The challenges of open neuroimaging data reuse - Insights from Mapping the Human Thalamus.
PG090 The challenges of open neuroimaging data reuse - Insights from Mapping the Human Thalamus.

Anatomically informed responsible reuse of open magnetic resonance imaging (MRI) datasets in the human brain's subcortex is motivated by both practical and scientific arguments. However, without a structured framework that takes methodological considerations into account, it can undermine anatomical validity. Currently, subcortical neuroimaging research lacks such an anatomically grounded framework. Data reuse should be guided by spatial resolution, contrast properties, and the underlying anatomy of target structures. We address these challenges using the thalamus as an example1. It is composed of over 20 individual grey matter nuclei which are separated into groups by the thalamic lamina, which make it a particularly complex and interesting use case. Post mortem light microscopy-based descriptions have provided a much-needed anatomical framework with regard to the location and size of the individual thalamic nuclei. Ground truth volumetric data is available from older stereological studies on microscopy sections in which the borders of individual thalamic nuclei can be discerned. Using the data published by Xuereb et al2 we investigate the challenges of varying size of the individual thalamic nuclei (see table 1).

We first calculated whether individual thalamic nuclei could be reliably detected using a 1 and 1.5mm isotropic voxel resolution. Sufficient resolution refers to an MRI voxel size not exceeding 5% of the target structure, as determined according to the standards presented by Mulder et al3. This criterion should be interpreted as a necessary condition, but not a guarantee for reliable delineation. It does not account for the contrast-to-noise ratio, partial volume effects at boundaries, nor the non-spherical geometry of the nuclei. We then identified publicly available human brain MRI datasets through a systematic search of major neuroimaging repositories, including OpenNeuro, NITRC, Zenodo, Figshare, Dryad, the Human Connectome Project (HCP), and various institutional data archives. We used combinations of keywords, such as "thalamus," "subcortical," "high-resolution MRI," "ultra-high field," "7T," "9.4T," “MPRAGE”, "MP2RAGE," "quantitative MRI," "QSM," "T2*," "R1," "R2*," and "post-mortem MRI". Based on our findings, we created THOR (Thalamic Hub for Open-data Reuse), which summarizes key acquisition parameters, contrasts, and cohort characteristics, enabling researchers to match their research questions to suitable data. Additionally, we developed practical guidelines based on microscopy-derived nuclear volumes, emphasizing minimal voxel size requirements and the importance of contrast choice and registration accuracy.

We evaluated acquisition parameters and image contrasts for their anatomical suitability for thalamus imaging, accounting for current MRI field-strength limitations, and compiled the results into an accessible data resource (THOR_v1) (Table 2). We identified 42 open access structural MRI datasets containing data of healthy participants with a minimum resolution of 1mm isotropic, which covers field strengths from 3- 9.4T and includes different modalities such as T1-MPRAGE, MP2RAGE T2*, R1 and R2*-maps and QSM (Table 2). Database selection guidelines were created using an iterative approach in which input from all authors was incorporated by the first and last author until consensus was reached. The finalized results are reported in Figure 1.

Here, we advocate the anatomically informed reuse of open MRI datasets. The thalamus provides an excellent example to demonstrate the value of, and the need for, prior anatomical knowledge as a tool to confirm biological plausibility and interpretability of the data. To facilitate researchers in their follow-up research on human thalamus we provide THOR, a hub with available high-resolution datasets. The reuse of data is a meaningful objective, but it comes with a number of challenges. Answering a research question using a dataset that was previously designed with a different purpose requires insight in the intricacies associated with the data collection, and the anatomical structure(s) under investigation. Within the guidelines described here, the datasets in THOR are suitable for responsible reuse.

Our proposed framework, based on the thalamus, regarding sufficient spatial resolution, appropriate contrast, and data selection, has the potential to be generalised for other subcortical regions. By integrating anatomical constraints into data selection, this work promotes reproducible neuroscience by combining open data with anatomically informed methodological rigor.
Meritxell BACH CUADRA , Roy HAAST , Annalisa LELLA , Nicola SAMBUCO , Joao JORGE , Shailendra SEGOBIN , Manojkumar SARANATHAN , Anne-Lise PITEL , Giulio PERGOLA , Emmanuel BARBEAU , Michael HORNBERGER , Thomas TOURDIAS , Vinod Kumar JANGIR , Anneke ALKEMADE (, The Netherlands)
10:54 - 10:57 #54705 - PG091 BraVa: Integration of brain vasculature into the EBRAINS Human Brain Atlas .
PG091 BraVa: Integration of brain vasculature into the EBRAINS Human Brain Atlas .

Neurovascular disease is a significant cause of death and disability, related to alterations of the vasculature supplying or within the brain [1]. Therefore, the characterization of brain vascular morphological patterns associated with disease is essential to understand the underlying pathological mechanisms. Likewise, vasculature is related to brain function and structure, being angiogenesis and neurogenesis closely related [2]. However, while several brain atlases provide detailed information about anatomy and function, only some have described vascular architecture [3,4], and they are based on small cohorts of healthy population. ​ We have developed a processing pipeline to generate group-wise probabilistic maps of brain vascular architecture, associated with specific diagnostic features. Likewise, models of 3D reconstructions of the vasculature for each category are provided in a reference space. The atlas, that will be integrated and available into the EBRAINS Human Atlas (https://atlases.ebrains.eu/viewer/ ), represents a beneficial tool for neurovascular research, encouraging the implementation of more realistic blood flow computational models, essential to simulate disease and treatment effects.​

The project is based on a database of patients with a suspected stroke that arrive at the Hospital Clinic of Barcelona (HCB). Each patient underwent a computed tomography (CT) scan at admission (including both anatomical and angiography images). Furthermore, about 40% of the cases were also scanned during the first week using magnetic resonance imaging (MRI), also including anatomical (T1-weighted) and angiography image (time-of-flight acquisition). The pipeline followed can be seen in Figure 1. From a subset of 20 cases from the aforementioned data, TOF and CT angiography (CTA) are processed to automatically segment vasculature, currently with an automatic thresholding method based on maximum entropy. To obtain the probabilistic model, images are registered into the EBRAINS Human Brain Atlas template. For that, elastic diffeomorphic registration is performed between patient MR images and the template using ANTs Registration toolkit [6]. ANTs was also applied to perform intra-patient affine registration to ensure inter-modality matching. The estimated transformations are applied to the vessel segmentation on the corresponding modality, so they are aligned with the template. Thus, at each voxel of the template, the probability of the presence of a vessel can be easily determined. The group-wise mean of the spatially-normalized segmentations is computed into probabilistic maps of vasculature and 3D meshes of the vasculature were reconstructed.   This pipeline is being applied to a database of about 4000 cases, that will be classified under different diagnostic conditions to build vascular atlases of specific conditions. The maps and the models will be integrated into the EBRAINS Human Brain Atlas using the available resources from the EBRAINS web page.  

A probability map was obtained for the 20 patients, both from TOF and CTA data. Figure 2 shows the 3D visualization of the resulting vascular tree obtained from a single patient after TOF and CTA segmentation.

To our knowledge, the results obtained in this project will constitute the first atlas to include probability maps and 3D vasculature models at the acute phase of stroke. Therefore, these results will contribute to deepening the understanding of changes occurring during a neurovascular accident. Including a set of morphological architecture maps, representing specific diagnostic features regarding the type of, location and size of stroke, identified on a reference template, will provide a valuable source of information to compare with subject-specific data. This will aid in the investigation of brain vasculature, related diseases, and its link with brain anatomy and function.   The integration of the results into the EBRAINS Human Brain Atlas will complement the already available information, which includes structural and functional parcellation, connectivity, cytoarchitecture or molecular data, among others. 

A pipeline to create a probabilistic atlas of the brain vasculature has been developed. It has been validated in a 20 case subset of the dataset that will be further analysed to characterize the variability of the vasculature under different conditions and provide a probabistic atlas of neurovasculature, that will be further improve with the inclusion of all the available cases. A key step of the atlas development is the segmentation of vasculature in either CTA or MRA. The generated data will be integrated into the EBRAINS Human Brain Atlas to make them available to the community. The atlas could contribute to a better understanding of changes occurring during a neurovascular accident, providing a set of morphological architecture maps for specific diagnostic features.
Nerea GONZALEZ ARANCETA (Barcelona, Spain) , Xabier URRA , Carlos LAREDO , Timo DICKSCHEID , Emma MUÑOZ-MORENO
10:57 - 11:00 #54688 - PG092 BIfTI Phantoms: an open, implementation-agnostic standard for reproducible MRI simulation using Bloch Informatics.
PG092 BIfTI Phantoms: an open, implementation-agnostic standard for reproducible MRI simulation using Bloch Informatics.

Reproducibility in MRI method research requires open file formats. For pulse-sequence definitions, Pulseq has emerged as a de-facto community standard. No comparable standard exists on the phantom side: JEMRIS[1], KomaMRI[2], MRiLab[3], MRXCAT[4] and BrainWeb[5] each define their own application-specific layout, frequently without explicit physical units, voxel-to-world conventions, or multi-tissue/multi-channel support. Comparison of simulations and reproducibility of experiments suffers from the absence of an application-agnostic format. We introduce NIfTI-based phantoms for Bloch Informatics called BIfTI, an open standard that aims to be universal and easy to parse, view and use.

The goal of BIfTI phantoms is to increase reproducibility and comparability between experiments and simulators. We implemented loaders for MR-zero[6] and KomaMRI[7] and constructed single-slice 2D phantoms out of BrainWeb data. These phantoms were loaded into both simulations, which then computed and reconstructed images for PyPulseq [7] TSE and EPI sequence examples. Comparing results allows to evaluate the reproducibility of simulations. To achieve this goal of an open standard that is easy to adapt, we defined the following properties: The file formats should be widespread, easy to load and modify and the overall specification has to be as simple as possible, and viewable in any NIfTI viewer. At the same time, it should be strict enough to enforce a unified format without edge cases. To support reproducible science, it should be easier to edit files by hand and store the used variants rather than modifying programmatically. Last, as NIfTI files can get large it should be possible to re-use them in different phantoms for different field strengths and resolutions. These design goals could be realized by using JSON and NIfTI files with clearly defined contents forming the BIfTI standard. In an effort to stay as open as possible, the resulting specification is hosted on GitHub and open to contribution. Open science is explicitly encouraged by this project, which means sharing simulation phantoms wherever possible. For this task, a registry of phantoms is introduced alongside of this phantom format, open for anyone to use. Its design goals were to be as easy to implement and contribute to while still being able to retain full control over licenses and attributions. Example code to programmatically load and view phantoms from this registry is made available next to the registry itself, all available on GitHub: https://github.com/mrx-org/bifti-phantoms

Fig. 1 shows TSE and EPI images from both simulators on the identical phantom. The two pipelines produce equivalent contrast (TSE) and the expected EPI distortion and chemical-shift artefacts. Residual differences are dominated by simulator-internal modelling choices: stochastic spin-ensemble noise in Koma versus deterministic PDG signal in MR-zero. Fig. 2 shows the design of the BIfTI phantom file format. A single JSON configuration file defines all phantom properties, units and tissues. The latter reference sub-volumes of NIfTI files. This structure allows re-use of those BIfTI files, easy editing by hand or from code and viewing and loading with a large variety of tools. The exact specification can be found online: https://github.com/mrx-org/nifti-phantoms/blob/main/SPEC.md. To further support open science and data sharing, a public registry lists available phantoms. It can be extended by anyone using pull requests; the referenced phantom data can be hosted on suitable platforms like Zenodo. Fig. 3 lists alternative open formats and their properties of two categories: ISMRMRD and BIDS are open, implementation agnostic formats. However, they are targeted at raw data and clinical data and lack features needed to define the physical properties of simulation data. The rest are ad-hoc formats for specific implementations. While those are suitable for simulation in general, they carry the limitations of the implementations that use them like the lack of multi-tissue support, diffusion data or multi-coil systems.

The ease with which MR-zero and Koma can be compared by just using the same sequence and phantom file prove the usefulnes of a universal phantom format. Ease of both use and implementation confirm a successful balance between strictness and flexibility in its design. Research shows that no suitable alternative seems to exist.

The BIfTI phantom specification is – to our knowledge – the first simulator- and modality-agnostic open standard for MRI simulation phantoms. While Pulseq has proven itself as standard for sequence definitions, BIfTI phantoms aim to be the missing piece for fully reproducible simulation experiments and comparison of simulations. In an ongoing effort to make science open and accessible, we invite the community to contribute to the standard, integrate it with more simulations and to share their phantom data where possible.
Jonathan ENDRES (Erlangen, Germany) , Simon WEINMÜLLER , Magda DUARTE , Moritz ZAISS
11:00 - 11:03 #54634 - PG093 TriFlow: A Low-Cost, Open-Source Flow Phantom for Moderate-Velocity 4D Flow Validation.
PG093 TriFlow: A Low-Cost, Open-Source Flow Phantom for Moderate-Velocity 4D Flow Validation.

Validation of 4D Flow MRI requires controlled phantoms that enable accurate assessment of velocity encoding [1]. A key challenge is ensuring that measured velocity differences across encoding directions (RL, AP, SI) reflect sequence behavior rather than phantom-induced variations. Most commercial and custom phantoms target high-velocity regimes (e.g., aortic flow > 100 cm/s), yet peripheral hemodynamics and other applications (e.g. neurofluids, tissue motion) involve substantially lower velocities (~40 cm/s). Validating sequences in lower-velocity regimes is demanding due to reduced SNR and increased partial volume effects. Existing low-velocity phantoms (e.g., 5 cm/s) often lack multi-directional 4D flow capability [2]. This work presents TriFlow, a flow phantom generating reproducible and stable moderate-velocity flow (~40 cm/s) within a single continuous loop that travels bidirectionally through three orthogonal segments. This design enables the systematic evaluation of directional velocity encoding (RL, AP, SI) within a 20-channel head coil while minimizing geometric and flow-related complexities in the imaging volume. The single tube design ensures constant flow in all directions via mass conservation.

A single closed-loop circuit with ~12 cm straight segments traversing RL, AP, SI was placed inside a 20-channel head coil. 180° bends were placed outside the central field of view to minimize curvature-induced flow disturbances within the imaging volume to achieve laminar (parabolic) flow. The system incorporates a brushless DC pump, a bubble trap and pulsatility dampener, an inline flow sensor for real-time monitoring of flow, and a gravity-fed reservoir keeping a steady-state operation. Phase-contrast MRI was performed at 3T using an Compressed Sensing accelerated 4D flow sequence [3] developed in PyPulseq [4] with a resolution of 1mm³. The sequence was repeated with three undersampling factors US=2, 4, and 8. For comparison, a manufacturer-provided three-directional phase contrast sequence with similar acquisition parameters, and GRAPPA US of 2, was used. The field of view was oriented with the three directions parallel to the tube axes. Venc was set to 80 cm/s assuming a ratio of 2 between mean and peak velocities in a laminar condition (Poiseuille flow) [5] and a mean velocity measured by an inline flow sensor of 40 cm/s. Velocity values were measured along the diameter of one of the tubes averaging multiple voxels along its length across a region of interest (ROI, Fig 2, left). A parabolic fit was performed to confirm laminar flow. Agreement between the undersampled sequence and the product sequence in all three directions was also measured by taking the average of each velocity component in a similar ROI.

Stable, reproducible flow was produced in all three directions. Profiles after bends showed no asymmetric distortion. At Venc = 80 cm/s, aliasing in a few voxels across the whole volume confirmed peak velocities near 80 cm/s. The flow profile in the considered slice was confirmed to be parabolic (R² > 0.93, Fig. 2, right), with a peak velocity of 69.9 cm/s. Comparison with a clinical Siemens sequence showed close agreement (difference in mean velocities < 1 cm/s for every component, Fig. 3). Velocity maps for R=2, 4, and 8 showed similar flow patterns (Fig. 4). Quantitative analysis confirmed up to 2cm/s difference between the means and a change in standard deviations of less than 2 cm/s.

The moderate-flow phantom was designed to provide a stable and reproducible reference for validating phase-contrast MRI sequences under controlled flow conditions. The single continuous tube guarantees identical volumetric flow in all three encoding directions via mass conservation. The laminarity of the flow profile and the absence of turbulence validates the approach of placing bends outside the FOV. The strong agreement with a Siemens product sequence supports the phantom's utility as a ground-truth platform, while also supporting the accuracy of the Pypulseq implementation. Remaining discrepancies likely reflect FOV alignment and ROI selection variability rather than flow instability. Undersampling experiments using the Pypulseq sequence showed a modest increase in standard deviation, consistent with the expected amplification of noise during accelerated acquisition and spatial averaging across the small tube lumen. Limitations include the lack of repeatability assessment and the preliminary nature of comparisons. Future work will include statistical analysis of reproducibility and testing across wider flow rates.

TriFlow provides stable multi-directional flow with parabolic profiles and no bend-induced artifacts. Agreement with Siemens and consistent undersampling performance confirm its utility as a low-cost, open-source validation platform for custom 4D flow sequences.
Riccardo MANN (Basel, Switzerland) , Sabine Melanie RÄUBER , Francesco SANTINI , Marta Brigid MAGGIONI
11:03 - 11:06 #54223 - PG094 Multi-site, Multi-vendor Reproducibility of ECG-gated Cardiac T1 and T2 Mapping: A Phantom Study.
PG094 Multi-site, Multi-vendor Reproducibility of ECG-gated Cardiac T1 and T2 Mapping: A Phantom Study.

Quantitative cardiac MRI (CMR) T1 and T2 mapping enables non-invasive myocardial tissue characterization. Native T1 and extracellular volume fraction (ECV) are sensitive to diffuse fibrosis and edema, whereas T2 primarily reflects myocardial edema, supporting clinical decision-making in conditions such as iron overload, amyloidosis, acute inflammation, and transplant rejection. Mapping relies on vendor- and implementation-specific sequences (e.g., MOLLI for T1; T2-prepared bSSFP or GraSE for T2), leading to inter-scanner differences. Establishing multi-site and multi-vendor reproducibility by quantifying accuracy, bias, and inter-scanner variability against reference standards is therefore essential for multicentre studies and clinical applicability.

The study was conducted at five medical centres in Finland with 13 different scanners (Vendor 1: n=9; Vendor 2: n=4). Two phantoms, one commercial phantom (CaliberMRI System Standard Model 130) [1] and one in-house phantom, were scanned. The commercial relaxometry phantom comprised 28 compartments: 14 NiCl2 solutions spanning a range of T1 values and 14 MnCl2 solutions spanning a range of T2 values. NIST-traceable 1.5 T reference values were used for accuracy assessment (available for all NiCl2 compartments and for 12/14 MnCl2 compartments). The in-house T1 and T2 mapping quality assurance phantom was produced according to Kato et al. [2] with 16 inserts covering typical range of T1 and T2 values present in myocardium. Because clinical mapping sequences were not reliable at short relaxation times, analyses of clinical T1 and T2 mapping were restricted to compartments with sufficiently high relaxation times. Clinical T1 mapping was acquired using MOLLI 5(3)3 with site-specific parameters. Clinical T2 mapping was performed using a T2-prepared bSSFP on Vendor 1 systems and a GraSE-based sequence on Vendor 2 systems. Simulated heart rate of 60 bpm was used with all scans. In addition, the reference T1 and T2 mapping sequences specified in the commercial phantom manual [1] were acquired on both phantoms. ROIs were placed manually by a single reader. Analysis was done with cvi42 (Circle Cardiovascular Imaging Inc., Calgary, Canada) software and for T1 reference sequence with nordicICE (NordicNeuroLab, Bergen, Norway) software. Accuracy was assessed as bias percentage versus reference values computed separately for each phantom compartment and summarized across compartments for the commercial phantom. Inter-scanner variability was quantified for both phantoms as the coefficient of variation (CV%) across scanners, computed separately for each phantom compartment and summarized across compartments. For the in-house phantom the emphasis was on clinically relevant relaxation ranges (T1 900–1300 ms; T2 40–80 ms) [3]. Analyses were stratified by vendor.

All results are reported as median (Q1–Q3). Relative bias for MOLLI T1 mapping versus reference values was 3.64% (3.27–8.59%) on Vendor 1 and 3.09% (2.62–8.24%) on Vendor 2 (Fig. 1). Inter-scanner variability for MOLLI was 1.01% (0.62–1.77%) on Vendor 1 and 1.01% (0.60–1.56%) on Vendor 2. Clinical T2 mapping sequences showed a relative bias of 21.73% (4.69–40.45%) on Vendor 1 (T2-prepared bSSFP) and 12.11% (11.77–14.52%) on Vendor 2 (GraSE), versus reference (Fig. 2). Corresponding inter-scanner variability was 7.08% (4.56–9.42%) on Vendor 1 and 1.90% (1.36–2.74%) on Vendor 2. On the in-house phantom, within myocardial-like relaxation ranges, inter-scanner variability (CV%) was 3.06% (2.34–3.29%) for MOLLI and 3.70% (2.73–5.61%) for the clinical T2 sequence on Vendor 1, and 0.54% (0.42–0.90%) for MOLLI and 1.26% (0.87–1.43%) for the clinical T2 sequence on Vendor 2 (Fig. 3-4). Reference relaxometry sequences demonstrated similar or lower variability compared with clinical mapping on the commercial phantom (Vendor 1: T1 CV% 0.70% (0.38–0.81%), T2 CV% 3.77% (3.28–6.27%); Vendor 2: T1 CV% 0.42% (0.36–0.48%), T2 CV% 1.20% (1.18–1.84%)).

The results demonstrated inter-vendor variability in quantitative MRI relaxometry, affecting both T1 and T2 values and their dispersion. In MOLLI-based T1 mapping, differences were likely driven by T1/T2 ratio dependence and magnetization transfer effects, further influenced by vendor-specific hardware and sequence parameters [4-5]. In T2 mapping, variability was mainly due to the use of different sequence types across vendors [6-7]. Phantom composition also influenced the results, and uncertainty in standard phantom reference values—particularly for T2—suggests possible temporal changes in object solutions, although comparisons between systems remain valid.

A tissue-mimicking phantom with a physiologically relevant T1/T2 ratio produced systematically different results compared to a standard phantom, highlighting the importance of phantom composition in quantitative MRI. Phantoms for quality assurance should therefore closely match the relaxation properties of the target tissue.
Ville ISO-KOUVOLA (Turku, Finland) , Juha PELTONEN , Teija SAINIO , Kalle KOSKENSALO , Jani SAUNAVAARA , Touko KAASALAINEN , Tiina OJALA
11:06 - 11:09 #54139 - PG095 Cross-platform demonstration of an autonomous MRI field camera.
PG095 Cross-platform demonstration of an autonomous MRI field camera.

NMR field cameras enable high-resolution measurement of magnetic fields in MRI scanners, but their use has remained largely limited to research sites due to the integration requirements with the host scanner. In previously published work, a vendor-independent framework for field camera operation that eliminates the need for dedicated sequences for probe calibration and synchronization was introduced[1], relying instead on rigid-body constraints and generic sequences for calibration, and the intrinsic periodicity of sequences for synchronization. This way, field cameras can be operated independently of the respective target scanners: the present work validates this method on complex, clinically relevant sequences across two scanner platforms, establishing its generalizability.

Rigid probe arrangements of six NMR probes were deployed on a Philips Elition X (3 T) and a Siemens Cima.X (2.89 T). Short-T1 19F probes (< 10 ms, 1.3 mm capillaries) were used for all measurements. The relative positions of the rigid-body assembly of probes were pre-characterized a single time and could after this be deployed in either scanner. For each sequence run, the periodicities had to be determined which was done using epoch folding[1], which also enabled producing pseudo-continuous gradient measurements. For sequences with nested periodicities, a second stage of epoch folding was applied to resolve the inner loop structure. Measurements were performed on turbo gradient echo (TFL/TFE), turbo spin echo (TSE), and diffusion tensor imaging (DTI) sequences, and parameters were matched between platforms on their respective consoles where possible.

Pseudo-continuous sequence diagrams were produced for all sequences on both platforms. For the TFL/TFE sequences, it was noted that the two scanners implemented different numbers of echoes in the pulse trains. In the TSE results, we observed a difference in phase encoding strategies, with the phase encode excursions being achieved by either changing the scaling and/or the timing of the encoding trapezoids. In the DTI measurements, it was possible to produce pseudo-continuous measurements of the diffusion encoding gradients thanks to the rapid re-excitation of the short-T1 probes. This in turn enabled measurements of b-values (Philips: 797, Siemens: 798, nominal: 800) and full determination of three-dimensional diffusion encoding directions. It was noted the two platforms appear to employ distinct sphere-sampling strategies.

The results demonstrate that the method can be deployed across scanner vendors, field strengths, and sequence types including those with nested periodicities. The identified inter-platform differences illustrate that sequences considered nominally equivalent may differ in non-trivial ways at the physical level. Being able to accessing these types of sequence implementation details highlights the unique capability of the method and positions it as a sequence consistency- and harmonization tool that for example could be used in multi-site studies and for quality assurance purposes. Current limitations of the method include the inability to capture aperiodic sequences, which could only realistically be tackled with continuous measurements, as suggested in [2]. An appealing addition to the method would be the recording of RF transmit pulses as they would add a missing link in the sequence diagram results[3].

This vendor-agnostic field camera measurement framework has been validated across two commercial MRI platforms and a representative set of clinically relevant sequences. The method is demonstrated to enable independent, physics-level sequence recordings without requiring scanner integration or elevated access rights. This could have implications for quality assurance, sequence harmonization in multi-site studies, and the broader goal of transparent, reproducible MR experimentation.
Oskar BJÖRKQVIST (Zürich, Switzerland) , Klaas P. PRUESSMANN
11:09 - 11:12 #54685 - PG096 Estimating cortical thickness with portable low-field MRI.
PG096 Estimating cortical thickness with portable low-field MRI.

MRI-based estimates of cortical thickness (CTh) are valuable in studies of brain development and aging, as well as those of psychiatric and neurological disorders [1]. Portable low-field (LF) MRI systems are expanding access to neuroimaging in clinical and research settings, but their lower image quality raises questions regarding the reliability of LF-derived metrics. In this work, we investigate values of CTh estimated with three Halbach-based systems: two similar 90 mT scanners [2], with different shimming configurations and field homogeneities, and a more homogeneous 47 mT system [3]. We benchmark our results against a 3 T system, and normative UK Biobank (3 T) data [4].

Brain images were acquired at 3 T and across three LF systems in three healthy volunteers: Persons A (age < 50) and B (60 < age < 70) were scanned in a 47 mT Halbach system, and Person C (60 < age < 70) in two different 90 mT Halbach scanners. All individuals underwent additional 3 T acquisitions for reference. With the 47 mT system, we acquired 3D T1w and T2w neuroimages (Person A), as well as STIR (Person B). For T1w, we employed inversion recovery acquisitions to generate contrasts visually comparable to those obtained at 3 T. Three orthogonal anisotropic volumes (1.5 x 1.5 x 5 mm³) were acquired for all three contrasts with axial, coronal, and sagittal orientations (5 min each for T1w, 8 min for T2w, 7 min for STIR), together with an isotropic STIR image (1.5³ mm³, 25 min). All acquisitions were undersampled with a k-space filling factor of 0.70. The anisotropic images were combined into quasi-isotropic reconstructions using ANTs [5] and denoised using SNRAware [6]. We also acquired three anisotropic T1w volumes (1.5 x 1.5 x 5 mm³) on both 90 mT systems (Person C), and combined them into quasi-isotropic reconstructions using ANTs. The k-space filling factor was 0.36 and every acquisition took 4 min. In this case, images were denoised with SNRAware and, given the stronger inhomogeneities in these systems, distortion corrected using SPDS field maps [7]. CTh was estimated for 3 T, anisotropic, isotropic, and quasi-isotropic datasets using FreeSurfer recon-all-clinical [8], which includes super-resolution, segmentation, and cortex reconstruction. Agreement was quantified using linear correlation (r) across 34 cortical ROIs, both between hemispheres and between LF (46 and 90 mT) and 3 T acquisitions. LF-derived CTh estimates were additionally compared against sex- and age-matched mean CTh (within 95 % confidence intervals) from the UK Biobank (N = 32,548).

Figure 1 reports the left/right (LH-RH) and low/high field (LF-HF) correlation per individual, scanner, and protocol. Figure 2 shows quasi-isotropic images (above) reconstructed from three anisotropic acquisitions (below), alongside LF-HF scatter plots for each case. Figure 3 shows the HF and LF images with their corresponding FreeSurfer outcomes for two ROIs: the temporal pole and the entorhinal, marked already in Figure 2. Figure 4 compares the bilateral average CTh from LF scans against the 95 % confidence intervals for Persons A and C, computed from sex- and age-matched profiles from UK Biobank data, and their correlation with their mean CTh.

With all three Halbach scanners, most correlation values are above 0.5 with their respective 3 T images, reaching up to 0.9 at 47 mT. Going from anisotropic to quasi-isotropic images generally improves LH/RH and LF/HF agreement, mitigating reduced through-plane resolution, geometric distortions, and spatially varying intensity. Note that FreeSurfer recon-all-clinical failed at the initial synthesis step unless images were first denoised. At 47 mT, the main limitation for T1w and T2w images appears to be readout-dependent brightness modulation from the high RF coil Q-value. The lowest 47 mT performance was obtained with STIR, a contrast not represented in the training of the reconstruction pipeline. At 90 mT, geometric distortion played a substantially larger role, explaining the stronger limitations observed in both scanners, and quasi-isotropic reconstruction appears necessary to achieve acceptable performance. Some regions remain particularly sensitive to LF image quality. Temporal pole segmentation improved with quasi-isotropic reconstruction, whereas the entorhinal cortex remained challenging, likely because lower occipital and temporal regions are incompletely captured in our Halbach scanners. Finally, CTh values from 90 mT quasi-isotropic T1w images correlated with UK Biobank normative ROI values at r ≈ 0.66, while 47 mT acquisitions reached r ≈ 0.8.

Validated against 3T reference data and UK Biobank normative ranges, these results establish a potential methodological pathway towards estimating cortical thickness with portable low-field MRI.
Pablo GARCÍA-CRISTÓBAL (Valencia, Spain) , Alba GONZÁLEZ-CEBRIÁN , Teresa GUALLART-NAVAL , James HENGENIUS , Beatrice LENA , Tomáš PAUS , Andrew WEBB , Joseba ALONSO
11:12 - 11:15 #54583 - PG097 Low-field elliptical Halbach magnet scanner for MR-guided Focused Ultrasound deep-brain therapies.
PG097 Low-field elliptical Halbach magnet scanner for MR-guided Focused Ultrasound deep-brain therapies.

Magnetic Resonance Imaging (MRI) has been used for guiding Focused Ultrasounds (FUS) therapies of other medical devices since 1991[1]. MR-guided FUS (MRgFUS) utilizes MRI as a reliable technique for the positioning of the beam using the MRI, and Ultrasound for non-invasive therapies. It can be used in a wide range of therapies, from high-intensity thermal ablation of tumors deep inside the body[2], to neuromodulation caused by very small temperature increases in the deep-brain region[3]. However, access to MRI scanners is an issue in more resource-limited environments, such as small hospitals and clinics[4]. This access is even more reduced when we consider that conventional FUS setups consist of complex, and expensive, multi-array transducers, making riskier invasive procedures the only feasible alternative[5]. In this work, we present a low-field MRgFUS system prototype for deep-brain therapies. With a total cost of under 200k euros, based on a portable, elliptical-Halbach-magnet MRI scanner[6], it strives to bridge the gap between this technology and wider population access.

The setup builds on a previous portable neuroimaging scanner with an 85 mT Halbach magnet (5000 ppm inhomogeneity over a 20 cm spherical FoV). The gradient coils consist of water-jetted, bent, solid copper plates spanning the magnet length for reduced thermal dissipation and improved linearity, producing up to 45 mT/m. We use an elliptical solenoid transmit/receive coil (20 turns of 2 mm copper wire, 26 cm length, 3 gap capacitors, short/long-axis 19.8/26.8 cm) that yields 40 µT/√W, powered by a 1 kW RFPA . The US subsystem employs a single-element transducer with a 3D-printed resin holographic lens designed in Matlab 2024’s k-Wave package[7]. The transducer sits in a water pool coupled to the patient’s head via an elastic membrane. It is localized in the image using a spheroid constellation,1.5 cm radius from its edge. We position the transducer using a robotic system with three linear stages and a hexapod, linked via a fiberglass pole to avoid magnetic interference. The subject rests on a sliding bed integrating everything, enabling insertion into the scanner without losing contact. Figure 1 shows the resulting MRI scanner. Figure 2 shows the subsystems’ layout and connections. We control everything in a custom version of the MaRGE GUI[8]. Positioning starts with a 3D RARE scan, 28 cm cubic FoV, 120×120×60 matrix, TR = 1200 ms, ETL = 30, echo-spacing = 10 ms, partial Fourier of 0.7 in the slice direction, lasting 7 min per scan. Zero-padding yields 2 mm in-plane and 2.3 mm slice resolution. A distortion map enables the correction of image distortions. We previously obtained this map through manual co-registration between an image of a reference phantom and its digital design. We co-register the resulting image with a previously acquired CT of the subject, where we also add the target position of the transducer. Once the software calculates the required displacements, we iterate the imaging and positioning until we reach the desired position. Finally, we launch the US treatment. We evaluated the system accuracy with an ex-vivo setup for Macaque Rhesus thalamus targeting. In this setup, we submerged a skull lid and the transducer in the pool and verified the position and shape of beam foci by mapping the peak pressure with a hydrophone relative to bone reference points, as shown in Figure 3. We conducted in-vivo safety tests on four healthy Macaque Rhesus subjects, using a custom-made head fixation system (Figure 4a). Each underwent three sessions spaced 48–96 h apart. Before the first and after the last therapy, an adapted MRI protocol checked for treatment-induced lesions on a conventional high-field scanner.

Figure 3-right shows the resulting image, and a 3D reconstruction of the foci position in the simulation and the experimental position. Displacements from simulations were [-2.79, -0.74, -0.88] mm in [x, y, z], giving us a beam positioning precision in ex-vivo phantoms of under 1 mm in-plane and of 2 mm in-slice. The US transducer, operating at 527 kHz, produced an elongated inter-plane focus which gives a larger error, but it also makes it so that enough overlaps the target. Preliminary pre-clinical safety tests yielded no damage or adverse clinical effects. Figure 4-b,c show the acquired image of the macaque subject, and the co-registered CT.

We achieved sub-millimeter in plane accuracy in macaque, confirming that low-field MRI can effectively guide focused ultrasound for deep-brain targets with acceptable precision and no observable adverse effects.

These results represent the first attempt of a low-field, inexpensive MRgFUS system. However, we need more tests to validate the real effectiveness of such technology. Notably, in the upcoming months, we will perform blood-brain-barrier opening experiments on healthy macaque subjects to validate them.
Pablo GARCÍA-CRISTÓBAL (Valencia, Spain) , Eduardo PALLÁS , Alba EROLES-SIMÓ , José Miguel ALGARÍN , Víctor VEGAS-LUQUE , Alicia CARRIÓN , Noé JIMÉNEZ , Josep RODRÍGUEZ-SENDRA , Fernando ALONSO-FRECH , Inés TRIGO-DAMAS , José Angel PINEDA-PARDO , José Luis ALONSO-RAMOS , Juan José RODRÍGUEZ-GARCÍA , Joseba ALONSO , Francisco CAMARENA
11:15 - 12:00 Visit posters PG088-PG097.
Sala de Cambra

"Friday 02 October"

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C22
10:45 - 12:00

OC2-1 Scientific session
Reliable MRI: Reproducibility, Fidelity, and Quality

10:45 - 10:57 #54165 - PG020 GHOST: Generalized Higher-Order Operator Sketching via a Turnstile Model.
PG020 GHOST: Generalized Higher-Order Operator Sketching via a Turnstile Model.

Image reconstruction with an expanded encoding model improves image fidelity in the presence of static and dynamic magnetic field perturbations [1, 2]. However, forward and adjoint operators for the expanded encoding model are not well approximated by the Fast Fourier Transform (FFT), and are often implemented as explicit matrix-vector products. The computational complexity of these products scales prohibitively with matrix size and frequency-domain samples, presenting a major barrier to routine model-based reconstruction at high resolution. An optimal approximation of the expanded encoding operator as a sum of FFTs can be constructed by singular value decomposition (SVD) of the non-Fourier perturbation to the encoding matrix, however computation of this decomposition is also prohibitive. To enable practical higher-order image reconstruction at high resolution, we have developed GHOST (Generalized Higher-order Operator Sketching via a Turnstile model), a method for efficient approximation of expanded encoding operators in linear time capable of handling arbitrary static and dynamic field perturbations [3].

The expanded encoding model was considered as a Hadamard product of a Fourier matrix and non-Fourier perturbation matrix, where the elements of the perturbation matrix are complex exponential functions with argument equal to the sum of the outer product of the static off-resonance and sample times and higher-order field coefficients and basis functions respectively. Approximate truncated SVD of the non-Fourier perturbation matrix was accomplished using a randomized SVD in a turnstile streaming model, wherein the matrix was presented as a series of innovations [4]. Each innovation was multiplied by fixed complex standard normal matrices to update range, co-range, and core sketches [5]. Sketch generation was performed on GPU, with data stored in device memory to minimize memory overhead. A randomly subsampled variant (GHOST-S) was also implemented. In this variant, random row and column subsets were used to estimate the reduced core problem, while full-dimension range and co-range sketches were still accumulated. QR decompositions were applied to the subsampled sketches, and the resulting triangular factors were used to lift the approximation back to the full k-space and image dimensions, after rescaling to account for the subsampling operation. Spatial and temporal basis functions recovered from the decomposition were used to implement forward and adjoint expanded encoding operators as a weighted sum of FFT operators acting on weighted data, and incorporated into a custom image reconstruction pipeline written in the Julia language [6]. An openly available high-resolution monitored 7 T spiral fMRI dataset was used for validation, as well as a separate 3D multi-echo gradient echo phantom scan with 1 mm isotropic resolution acquired on a Philips MR7700 with a 32 channel head coil to assess computational feasibility at high resolution[7]. Off-resonance maps were separately acquired and interpolated onto the image voxel grid. Accuracy and computational scaling compared to direct and Krylov methods were investigated in numerical experiments performed on an Nvidia RTX A4500 GPU and a desktop workstation with 64 threads and 256 GB of RAM.

The computational scaling of GHOST and GHOST-S was demonstrably improved compared to both direct and Krylov truncated SVD methods (Figure 1). GHOST-S achieves linear time-complexity with voxel count for fixed random samples, making approximate higher-order operator generation feasible at arbitrary resolutions. Operator generation for 2D required 1 s and generation at 3D required 12 seconds. Images reconstructed with GHOST were shown to exhibit reduced blurring and geometric distortion compared to nominal reconstructions (Figure 2). GHOST removed background off-resonance effects in the phase by including the measured off-resonance in the encoding operators. A slight rotation was also observed in the nominal image reconstruction of the 3 T phantom acquisition which is absent in the GHOST reconstruction. Mean absolute error in the matrix approximation was shown to decrease rapidly with chosen decomposition rank L and remained minimally affected by subsampling factor (Figure 3). Reconstruction time was 10 s for 2D and 10 min for 3D respectively.

GHOST provides a computationally efficient framework for generating fast model-based reconstruction operators which include spatiotemporal field perturbations. The method does not require interpolation, and is directly integrable into iterative reconstruction pipelines [8]. Image reconstruction fidelity and approximation accuracy depends on the chosen approximation rank, however the low computational cost of operator generation and use may enable empirical rank tuning.

GHOST presents a framework for computationally practical high-resolution model-based reconstruction incorporating arbitrary spatiotemporal field perturbations.
Alexander JAFFRAY (Vancouver, Canada) , Jonathan DOUCETTE , Julian KLOIBER , Cameron CUSHING , Alexander RAUSCHER
10:57 - 11:09 #54599 - PG021 A proof-of-concept study of using FID-signals as drivers for dynamic view-ordering for motion robustness in 3D GRE.
PG021 A proof-of-concept study of using FID-signals as drivers for dynamic view-ordering for motion robustness in 3D GRE.

Motion is a persistent challenge in neuroimaging [1]. Especially for 3D imaging that has a larger temporal footprint [2]. In a recent publication [3], we showed, for 3D imaging, that the visual appearance of motion artefacts is largely driven by the distribution of motion states in k-space. In particular, that sharp discontinuities of motion state, and multiple states near the centre of k-space, leads to the most disruptive artifact appearance. In this project, we explored improving motion robustness of 3D GRE by algorithmically selecting which ky-kz view to acquire in real time based on a FID signal. FID signals captured using a multi-channel receive coil are inherently motion sensitive due to varying loading of the receive channels [4]. The aim of this ordering was to smooth out discontinuities and protect the k-space centre from motion corruption.

A 3D GRE sequence with elliptical k-space coverage and R=2 CAIPI undersampling was modified to include a FID readout every TR (fig. 1A). A reference scan was acquired with a volunteer performing deliberate head motion. The FID signal acquired by the 48-channel array was then analysed to determine if different motion directions (down-up, left-right) could be distinguished. From the multichannel data (fig. 1B), the signal was denoised through a moving average of 100 TR’s (fig. 1C), coils were sorted based on their sensitivity and selectivity to left-right and up-down motion respectively. As a proof-of-concept, a single channel was then selected to act as a metric for left-right position, and another for up-down position (fig 1D). With this coil selection as reference, new data were acquired in another subject to assess whether dynamic sorting of ky-kz coordinates could be performed based on this metric. First, the subject was asked to perform the same experiment that the reference subject did (first down-up then left-right motion) and the ky-kz views were sorted in a greedy manner mapping the edge of k-space to a +/-10% change in FID signal relative to a reference (400 TR’s from the start of the scan to ensure steady state was reached), with the target ky coordinate mapping to the channel sensitive to up-down motion and the target kz coordinate mapping to the left-right motion signal. A second experiment was also performed in this subject, with smaller nods timed to the middle of the scan (which corresponds to the centre of k-space with standard sequential ordering).

The second subject imaged with the sequence showed a similar response in the FID signal as the reference scan did (fig. 2A) for similar motion, however for more subtle nodding a very weak response was measured, and it was insensitive to direction of motion (fig. 2B). Analysis of the resulting view order (fig. 3) shows that the FID signal can be used as a driver for the algorithmic ordering, and that it results in similar motion states being grouped together, and different states moving far from each other in k-space. Finally, a qualitative assessment of image quality comparing the effect of subtle nods on sequential sampling and FID driven sampling confirm that the distribution of motion states (even subtle motion) matter for image quality, with severe artifacts in the sequential case and minor ringing in the dynamically sampled case (fig. 4).

We have shown the potential of using FID signals to drive ordering of phase encoding views for 3D GRE in order to improve motion robustness. We have both shown that the signal in a multichannel array is selectively sensitive to motion in different directions, and that selecting target coordinates and updating the view order in real time is possible. Additionally, that motion distribution affects image quality. In future work, a more robust dimensionality reduction algorithm, e.g. PCA, should be explored to reduce the noise associated with individual channel measurements, and maintain generalisability across subjects assuming the same receive array is used. One benefit of this method is that recalibration on a subject-by-subject basis is unnecessary, as absolute motion estimates are not needed to order the views (as would be the case for traditional prospective and retrospective motion correction methods). Further work to explore the limits of motion robustness through ordering alone and comparison with traditional motion correction techniques is needed.

We have shown, as a proof-of-concept, that FID signals can serve as motion surrogates for motion driven view ordering.
Sophie SCHAUMAN (Stockholm, Sweden) , Kian MIRANI , Henric RYDÉN , Ola NORBECK
11:09 - 11:21 #54138 - PG022 k-q-ASeDiWA: Joint k-q reconstruction for accelerated diffusion MRI with learned phase estimation.
PG022 k-q-ASeDiWA: Joint k-q reconstruction for accelerated diffusion MRI with learned phase estimation.

Diffusion magnetic resonance imaging (dMRI) enables non-invasive characterization of tissue microstructure [1] but remains limited by long acquisition times, particularly for high angular resolution diffusion imaging (HARDI) [2]. Echo planar imaging (EPI) is commonly used for acceleration. While single-shot EPI suffers from geometric distortions and low resolution, multi-shot EPI mitigates these issues at the cost of increased scan time and sensitivity to shot-to-shot phase variations induced by physiological motion [3]. We propose k-q-ASeDiWA, an extension of the ASeDiWA framework [4] for joint reconstruction of undersampled EPI dMRI data. The method exploits signal redundancy across angularly similar diffusion directions, augmented by a deep learning-based phase estimation module.

The method extends the ASeDiWA framework [4] to the diffusion domain via k-q-space reconstruction kernels. It is formulated for single-shell acquisitions with D diffusion-encoding directions, represented by unit vectors {qⱼ}ⱼ₌₁ᴰ. For a target diffusion-encoding frame Sₜᴰʷ, t∈{1,...,D}, missing k-space samples are synthesized using local k-space information in Sₜᴰʷ together with nearby points from N neighboring diffusion encodings (Fig. 1). Neighboring frames are identified based on normalized angular distances between target t and candidate j (Eq. 1). Optimal k-q reconstruction subsets Qₜ are formed via tabu search [5] to minimize angular distance while maximizing sampling diversity within Qₜ. An augmented reference Aₜ is then constructed by combining fully sampled unweighted k-space data S with Qₜ according to Eq. 2, where ∠ denotes phase extraction, ε represents a U-Net and G denotes the GRAPPA reconstruction [6] applied to each frame in Qₜ. Specifically, GRAPPA-reconstructed frames are refined by ε, image phase maps are then extracted and combined with the magnitude of the unweighted image to form Aₜ. Finally, k-q kernel weights Wₜ are calculated to describe the linear mapping between acquired source points (src) and target points (targ) within a central calibration region of Aₜ (Eq. 3). The regularization matrix P (Eq. 4) governs the contribution of neighboring diffusion frames. Wₜ are regularized according to Eq. 5 to impose stronger penalties on more distant neighbors. To refine phase priors from initial GRAPPA reconstructions, a dual-input U-Net was trained on multi-contrast ex vivo mouse brain data. Training inputs were generated from denoised fully sampled data by applying simulated phase fluctuations [7], retrospective undersampling (R=4) and GRAPPA. Method evaluation was conducted on simulated dMRI data (b=1200 s/mm², D=32) by combining magnitude images from the Human Connectome Project [8,9] with synthetic coil sensitivity maps from a 2×2 surface array (Bruker BioSpin GmbH & Co. KG). Phase variations [10], correlated complex Gaussian noise and retrospective undersampling (R=4) were applied. The framework was prospectively validated in vivo on a 9.4T BioSpec system interfaced with ParaVision 360 V3.7 (Bruker BioSpin GmbH & Co. KG). dMRI mouse brain data were acquired at R=4 using a 2×2 brain surface coil array. Imaging parameters included TR/TE=4000/21 ms, FOV=16×18 mm² with an in-plane resolution of 0.167×0.281 mm² and 0.4 mm slice thickness across 18 slices. 32 directions at b=1200 s/mm² were acquired within 2.4 min. Reconstruction with N=4 and fitting quality were assessed across all studies via fractional anisotropy (FA) and mean diffusivity (MD) maps computed with MRtrix3 [11].

k-q-ASeDiWA reconstructions yield artifact-free diffusion-weighted images with improved structural preservation over GRAPPA (Fig. 2). Comparison against the noise-free ground truth shows that joint reconstruction of 32 diffusion directions at R=4 achieves lower relative RMSE (Rel) than a time-equivalent baseline (R=1, D=8) without inter-shot phase corruption (Fig. 3). Specifically, our method reduces Rel in FA and MD to 38.2% and 6.4%, compared to 68.2% and 9.5% for the baseline. In vivo results (R=4, D=32) in Fig. 4 further demonstrate robust reconstruction and FA and MD maps with typical physiological values.

These results establish k-q-ASeDiWA as a promising k-space joint reconstruction framework for accelerated dMRI, with potential for applications such as HARDI. Building on the original ASeDiWA formulation, it reduces phase inconsistencies across diffusion-encoding directions and enables high-quality reconstructions at R=4 in both simulation and in vivo experiments. Despite comparison with a phase-consistent baseline, it achieves superior FA and MD estimation in simulation. A limitation of the approach is a degree of spatial smoothing commonly associated with k-q reconstruction [12].

k-q-ASeDiWA reconstruction presents a novel approach for accelerated dMRI measurements. Our results indicate that exploiting redundancy between neighboring diffusion directions improves diffusion metric estimation across preclinical and clinical settings.
Anni LIU (Ettlingen, Germany) , Joëlle VAN RIJSWIJK , Ben JEURISSEN , Sascha KÖHLER , Marleen VERHOYE , Michael HERBST
11:21 - 11:33 #54406 - PG023 Spatial-angular implicit neural representations for accelerated diffusion MRI via joint k-q reconstruction.
PG023 Spatial-angular implicit neural representations for accelerated diffusion MRI via joint k-q reconstruction.

Accelerated diffusion MRI (dMRI) can be achieved using multi-shot EPI acquisitions with interleaved undersampling across diffusion directions [1] (Fig. 1). This, however, gives rise to a challenging image reconstruction problem, which is further complicated by shot-dependent phase variations caused by subject motion during diffusion encoding [2]. To solve this problem, methods have been proposed that combine phase-aware multi-shot reconstruction with priors that exploit redundancy across EPI shots [3, 4]. Other approaches exploit inter-diffusion-directional redundancy through explicit regularization [5, 6]. Implicit neural representations (INRs) offer an alternative by modeling the image series as a continuous coordinate-based function, where the network architecture and shared parameters serve as an implicit prior to capture spatial-angular (SA) structure and phase variations. INRs have shown promise for MRI reconstruction across time points or contrasts [7–9], but their use for dMRI reconstruction remains largely unexplored. In this work, we propose an SA factorized INR model (SAF-INR) for the joint reconstruction of undersampled dMRI images.

SAF-INR consists of three INR modules, each comprising an input encoding followed by an MLP. During reconstruction, it decouples shot-dependent phase and magnitude (Fig. 2c). Phase is modeled by a Fourier-feature-encoded spatial INR, while magnitude is modeled as a non-diffusion-weighted (DW) image modulated by diffusion attenuation. In log-space, this attenuation is decomposed into a spatially varying isotropic term and a low-rank (set to 5) SA component, whose spatial and angular bases are predicted by hash-grid (HG)- and spherical-harmonics (SH)-encoded INR modules, respectively. SAF-INR was compared with two baseline models: S-INR and SA-INR. S-INR uses a spatial HG encoded INR module that maps spatial coordinates (x) to the full concatenated complex-valued dMRI image series (Fig. 2a). SA-INR uses the same phase module as SAF-INR, however with an SA magnitude INR module with a composite HG/SH encoding of (x,g), predicting log-magnitudes that are exponentiated to obtain DW magnitudes (Fig. 2b). All MLPs used ReLU hidden activations and linear output layers. All INR models were trained by synthesizing complex-valued images, applying the Fourier undersampling operator, and minimizing a k-space data-consistency term (Fig. 2d) using Adam optimization [10]. Network widths were chosen to give all models similar parameter counts (≈1.7×10^5), and SAF-INR/SA-INR were pretrained from S-INR reconstructions. SAF-INR was also compared to compressed-sensing SENSE (SENSE-CS) [11] with empirically optimized spatial TV regularization. All methods were evaluated via Monte Carlo (MC) simulations. A fully sampled magnitude dMRI series was synthesized from a predefined diffusion tensor data set, comprising 4 b=0 images and 60 uniformly distributed DW images (b=1.15ms/μm2). Each magnitude image was paired with a phase map composed of a component shared by all images and a linear component with zero-mean uniformly sampled offset and slope. Multi-channel (Nc=8) k-space data was then generated using coil sensitivity encoding and Fourier transformation, with added Gaussian noise to produce 20 MC realizations at SNR=15. The dataset (excluding b=0 images) was retrospectively undersampled with acceleration factors R=4, 8, and 12 using R mutually exclusive Cartesian interleaf masks [12].

Fig. 3 shows that SAF-INR achieves the lowest reconstruction errors across all R values. While SENSE-CS shows substantial errors already at R=4, errors for S-INR and SA-INR increase noticeably for R=8. At R=12, S-INR fails, while SA-INR remains more stable, though still outperformed by SAF-INR. The MC analysis (Fig. 4) shows that for all R values, SAF-INR outperforms the comparison methods in terms of RMSE, bias, and STD, except for the low STD for SENSE-CS at R=12 that is outweighed by a huge bias.

The performance differences reflect the type of prior imposed by the three models. S-INR mainly relies on spatial smoothness and shared weights for shared anatomy across diffusion directions. However, it does not exploit the biophysical relationship between diffusion directions, leading to instability at high R-values. SA-INR separates magnitude and phase and models SA continuity in the magnitude signal. This better matches dMRI structure, but the model lacks constraints. SAF-INR imposes a stronger prior by using the b=0 magnitude image as an anatomical baseline and modeling diffusion contrast through low-rank SA attenuation, thereby constraining SA variations and reducing RMSE.

INR-based image reconstruction holds promise for accelerated dMRI with interleaved undersampling across diffusion directions. Simulation experiments suggest that incorporating diffusion-specific structure priors improves reconstruction quality, particularly at high R values. Funded by the EU under the MSCA-DN project IQ-BRAIN (No. 101169519).
Lara KUNZE (Antwerp, Belgium) , Natascha NIESSEN , Julia SCHNABEL , Arnold J DEN DEKKER , Jan SIJBERS
11:33 - 11:45 #54409 - PG024 Self-gated physiology inference for ventilation and perfusion from a burst-type of radial bSSFP sequence (SPICE-VQ).
PG024 Self-gated physiology inference for ventilation and perfusion from a burst-type of radial bSSFP sequence (SPICE-VQ).

Non-contrast-enhanced pulmonary ventilation and perfusion MRI increasingly utilizes balanced steady-state free precession (bSSFP) to overcome low signal-to-noise ratio in the lung (1-3). However, the existing methods can fail to capture rapid cardiac dynamics: real-time acquisitions may violate the Nyquist sampling limit especially in pediatric patients or patients with tachycardia (2-4), while the current Cartesian self-gating techniques induce temporal blurring by estimating perfusion via high-pass filtering rather than discrete phase extraction (5). To bypass these limitations, we introduce Self-gated Physiology Inference for Cardiorespiratory Extraction of Ventilation (V) and Perfusion (Q) (SPICE-VQ). This framework employs a 2D radial bSSFP acquisition in discrete bursts separated by relaxation intervals, permitting the inflow of non-saturated blood to boost parenchymal signal. A deep learning (DL) model then performs self-gating, extracting respiratory amplitude and cardiac phase from this discontinuous signal. We tested the feasibility of this technique for assessment of ventilation and perfusion in healthy volunteers at 1.5T.

ACQUISITION: Measurements were performed on a 1.5T MR-system (MAGNETOM Avanto Fit, Siemens Healthineers). Three healthy adults were scanned in free-breathing with a 2D radial bSSFP employing a 7th-order tiny golden-angle reordering and following acquisition parameters: TE/TR = 0.96/1.9ms, field-of-view = 40×40cm2, in-plane resolution = 3.1×3.1mm², slice thickness = 12mm, 20,000 radial spokes, RF pulse duration = 500µs, flip angle = 50°, bandwidth = 2170Hz/pixel. Data were acquired in continuous and burst mode using intervals between spoke packets (150 spokes and an inter-burst interval of 120ms (c.f. Figure 1)). Furthermore, a functional matrix pencil decomposition (MP) MRI scan using a Cartesian 2D ultra-fast bSSFP was performed in each volunteer (3). The study was approved by local Ethics Committee and written informed consent obtained. IMAGE RECONSTRUCTION: Cardiorespiratory motion signals were extracted from the radial k-space data. While the respiratory state was derived from the amplitude modulation of the k-space center, the instantaneous cardiac phase was inferred using a DL model trained on simulated cardiorespiratory signals. Figure 2 shows the work-flow of the self-gating procedure. Following multi-dimensional temporal binning, image reconstruction was executed using an XD-GRASP (6) with spatio-temporal total variation regularization. The reconstruction software was developed in-house using C++/CUDA. The motion across the reconstructed respiratory and cardiac frames was corrected with non-rigid image registration (7) and lung tissue automatically segmented (8). Functional pulmonary mapping was subsequently performed: fractional ventilation maps were calculated via voxel-wise linear fitting across the registered respiratory states, while perfusion maps were generated by isolating vascular and parenchymal blood transit through the application of dynamic mode decomposition to the cardiac cycle frames. The functional lung imaging pipeline is summarized in Figure 3. QUANTITATIVE ANALYSIS: Contrast-to-noise ratios for ventilation (CNRV) and perfusion (CNRQ) were calculated on the functional maps. CNRV and CNRQ were defined as a ratio between the ventilation amplitude or perfusion amplitude in the lung tissue excluding large vessels and the amplitude in part of the images containing muscle.

All scans were performed successfully in all volunteers without data loss or significant motion corruption. Figure 4 shows exemplary fractional ventilation and perfusion maps obtained from continuous radial, burst-mode radial, and Cartesian bSSFP datasets. The spatial distributions of both ventilation and perfusion derived from the SPICE-VQ framework demonstrated high visual concordance with the functional maps obtained via the established Cartesian matrix pencil (MP) MRI. Quantitative analysis confirmed that the burst-mode acquisition yielded higher functional contrast than the continuous radial approach for both ventilation (CNRV: 5.5±1.0 vs 5.1±0.9) and perfusion (CNRQ: 5.8±1.3 vs 1.7±0.3).

The SPICE-VQ framework successfully decouples temporal resolution from the physical acquisition limit, circumventing the Nyquist constraints of real-time imaging. As hypothesized, the burst-mode architecture demonstrated markedly improved perfusion contrast in the peripheral lung parenchyma compared to continuous radial acquisition. This validates that the inter-burst relaxation intervals effectively permit the inflow of fully magnetized, non-saturated blood to drive a critical signal amplification in the microvasculature.

SPICE-VQ enables robust self-gated extraction of cardiorespiratory signals from radial bSSFP acquisitions, including burst-based schemes, allowing consistent estimation of ventilation and perfusion maps from a single free-breathing scan without external gating.
Anne-Clémence PIVETEAU (Basel, Switzerland) , Oliver BIERI , Grzegorz BAUMAN
11:45 - 11:57 #53400 - PG025 Towards combined assessment of forced expiration and ventilation using lung MRI.
PG025 Towards combined assessment of forced expiration and ventilation using lung MRI.

MRI enables the assessment of lung structure and function without exposing patients to ionizing radiation or contrast agents [1] but is often limited by long scan times and the need for patient compliance. In this work, we propose a combined assessment of lung dynamics during forced expiration and lung ventilation, based on a single un-gated acquisition. The latter comprises “real-time” frames of 91ms footprint, which were sampled using an undersampled 3D UTE Fermat looped, orthogonally encoded trajectory (FLORET[2]) and reconstructed by a total variation-based deep image prior[3] model.

A custom developed 3D FLORET UTE sequence was implemented in pulseq[5] and tested in a healthy volunteer on a 3T scanner using the body and spine coil arrays (20 channels)[4]. The volunteer was asked to perform several slow deep breathing cycles, followed by a breath-hold in full inspiration, the forced expiration maneuver, again followed by a breath-hold in full expiration and finally continuous, shallow breathing cycles (~180s total). Fast spoiling[6,7] and a Fibonacci reordering scheme[7] using Fibonacci number 89 was applied (TR=1.82ms, TE=0.04ms, ADC duration=1.28ms, α=1° at an isotropic FOV of 350mm). 50 consecutive arms were binned and gridded on a (128px)³ matrix using GROG[8], yielding a resolution of 91ms x (5mm)³ at an acceleration factor of R≈37. A fully sampled k-space consisted of 1869 spirals (~3.4s). GRAPPA weights for calibaration were caluclated from a temporally averaged NUFFT reconstruction. Coil senstivity maps were estimated from a temporally averaged GROG reconstruction using ESPIRiT[9,10]. A two-step approach was used for reconstruction (see Figure 1): First, an iterative, total variation-regularized SENSE[11] reconstruction was employed, aiming to solve eq. (I) via a primal-dual algorithm[12]. Here, y denotes the acquired k-space data, E the MRI forward operator (3D FFT, coil combination, and sampling mask), λₜ/λₛ the temporal/spatial regularization weights with corresponding gradients ∇ₜ/∇ₛ, and x the complex image to be reconstructed. In a second step, the resulting reconstruction served as an input for a deep image prior[3], with an architecture based on [13]. Time-embedding based on the DC-signal (subjected to a Savitzky-Golay filter and normalized to [0,1]) was used to regularize the network on the breathing-state. Training was performed for 50 epochs, minimizing the mean-squared error between predicted and measured k-space data. Ventilation maps were estimated by the Jacobian Determinant of the deformation fields[14]. Latter were computed by registration of a full inspiration 3D-volume onto a full expiration state using the pyants library[15]. Segmentation masks of the lung volumes were automatically determined for a temporal sequence of 1100 volumes using the openly available, prompt-based Segment Anything Model (SAM) 3.1[16]. These were then used to quantify lung volumes as well as derive spirometric parameters such as the forced expiration volume in 1 second (FEV1), the forced vital capacity (FVC) and their ratio FEV1/FVC.

Figure 2 presents a comparison between zero-filled-, TV- and TV-based DIP-reconstruction. The latter reduced artifacts while conserving spatio-temporal sharpness, as confirmed by a clear delineation of the dynamic lung boundaries in the x-t-plots. Figure 3 shows DIP reconstructions in full expiration, full inspiration and the result of the registration. The registered full inspiration slightly deviates from the full expiration as lung motion is still strong in the breathing cycles after the FE maneuver. Ventilation maps were derived from the DIP-reconstruction for full inspiration. Figure 4 presents the change in lung volume over time computed from the segmentation masks. Derived parameters from the forced expiration maneuver are FEV1=1.93L, FVC=2.81L and FEV1/FVC=0.69.

Initial analyses of lung ventilation show realistic maps for a healthy subject. Lung volumes were automatically derived using SAM without further finetuning, enabling dynamic volume estimation over an extended duration. Overall, SAM performed well, but showed minor errors in the segmentation of peripheral layers toward the chest wall and toward the back, as well as in the handling of blood vessels. The enhanced temporal resolution enabled a precise and reliable characterization of the FE maneuver. The next steps involve comparing the analyses using standard methods such as conventional spirometry, increasing the spatial resolution to also provide morphological information and expanding the study cohort to include patients.

The 3D FLORET sequence in conjunction with a DIP-based reconstruction enabled un-gated “real-time” assessment of a dedicated breathing maneuver at 91ms x (5mm)³ spatio-temporal resolution to study forced expiration and ventilation by means of a single acquisition.
Oliver SCHAD (Würzburg, Germany) , Sebastian SCHEIDEL , Viktor HARTUNG , Simon VELDHOEN , Tobias WECH
Sala Petita

"Friday 02 October"

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D22
10:45 - 12:00

LTD2-1 Scientific session
Musculoskeletal MRI

10:45 - 10:48 #54115 - PG153 Accounting for susceptibility effects in chemical-shift encoded fat-water separation for muscular dystrophies.
PG153 Accounting for susceptibility effects in chemical-shift encoded fat-water separation for muscular dystrophies.

Chemical shift-encoded (CSE) proton density fat fraction (FF) has become the reference quantitative MRI (qMRI) approach for assessing fatty replacements in muscular dystrophies (MD). The presence of lipids within biological tissue introduces magnetic susceptibility heterogeneity, which causes extra magnetization dephasing and relaxation. In muscle, the effect of microscopic susceptibility gradients on the Larmor frequency of lipid deposits has long been known in 1H MRS experiments [1], but its impact on CSE-FF methods remains underexplored [2,3]. Using qMRI data from three MD types – Duchenne muscular dystrophy (DMD), Becker muscular dystrophy (BMD) and facioscapulohumeral muscular dystrophy (FSHD) – we validated a newly developed algorithm accounting for a spatially varying frequency shift (FS) and transverse relaxation differences between fat and water, systematically investigating the fitting quality and the relationships between FF and DTI-estimated fiber angle.

Cohorts: 31 BMD patients (35.6 ± 18.6 y.o.), 30 FSHD patients (44.9 ± 17.2 y.o.), 16 DMD patients (10.7 ± 2.4 y.o.), 36 adult controls (41.1 ± 16.6 y.o.), and 4 DMD-age matched healthy boys (7.8 ± 1.3 y.o.) were included. Time between visits: 12 months for BMD and FSHD, 26 weeks for DMD. Acquisitions: MRI of legs at 3T (Siemens VIDA). CSE acquisition parameters: 3D six-point IDEAL GRE, TR = 21 ms; TEs = 2.22/5.42/8.62/11.82/15.02/18.22 ms; flip angle = 6°; 50 slices; spatial resolution = 0.9 × 0.9 × 5.0 mm³. In addition, spin-echo DTI acquisitions were used to estimate the fiber-to-B0 angle. Algorithm: to account for susceptibility effects, a FS between fat and water and separate relaxation terms were included in the CSE-FF signal model (cf. Equation 1). To estimate the unknown parameters, we adapted the phase-regularized NLLS optimization approach of Bydder et al. [4]. The fat signal had 9 resonances [4] (cf. Equation 2). All datasets were processed with algorithm variations noFS (without FS) and wFS (with FS), the latter with single or dual relaxations.

Examples: several in-vivo examples are displayed in Figure 1. Bias and fitting quality: there were large FF differences between the noFS and the wFS models (bias: -3.8%, limits of agreement: [-14.8%, 7.2%], Figure 2A-B). The bias was non-constant, mostly negative for FF below and mostly positive above 60%. The difference in Bayesian information criterion (BIC) per ROI between noFS and wFS varied according to the muscle but were strictly positive for FF > 20% and above 10 overall (Figure 2C), giving strong evidence of an improved model. Correlation with fiber angle: there was a negative correlation between the FS and the fiber-to-B0 angle (rho = -0.76, P < 0.001, Figure 3A). The non-molecular signal decay of fat and water signals were positively correlated with the angle (water: rho = 0.54, fat: rho=0.61, P < 0.001, Figure 3B and 3D). For comparison, the theoretical angular-dependency of FS and signal decay for random parallel infinite cylindrical inclusions of lipids [5] are shown in Figures 3A-B. Subject groups: the FS varied between subject groups, depending on the muscle and age. In the soleus, the FS was notably lower in both DMD patients and young controls than in adult subject groups (Figure 4B). The total water relaxation time, water-T2*, was significantly lower in FHSD patients than in adult controls in the tibialis anterior (-3 s-1), extensor (-2.3 s-1) and gastrocnemius medialis (-2.2 s-1). It was also lower in the gastrocnemius medialis of BMD patients (-2.8 s-1) (Figure 4C). In longitudinal assessments, the standardized response mean (SRM) of FF was higher with wFS than with noFS, both in patient groups (+0.19 [0.07, 0.34]) and across all FF ranges (+0.18 [0.09, 0.27], Figure 4D).

The proposed algorithm yielded consistently improved fitting quality and increased the responsiveness of FF quantification in the tested MD cohorts. FS and transverse relaxation angular-dependencies were indicative of some form of elongated structures (e.g. random parallel cylinders), which could reflect bulk fat depositing along the muscle fibers. FS values in the soleus were lower than in other muscles, reflecting the lower pennation angle compared to other muscles. Fat and water susceptibility-induced relaxations exhibited different dependencies on the FF, supporting the validity of a dual relaxation model. Opposite effects of a susceptibility-induced increase in R2’ and a pathology-related decrease in molecular R2 (e.g. inflammation) could occur simultaneously, complicating the interpretation of the estimated water-T2*.

The proposed method, accounting for a susceptibility-induced FS and distinct relaxations between fat and water due to heterogeneous magnetic microstructure, improved fitting quality and increased the responsiveness of a wildly used qMRI biomarker. It could improve the reliability of NMD studies and longitudinal monitoring of patients with myosteatosis.
Pierre-Yves BAUDIN (Paris) , Harmen REYNGOUDT , Valentina SHUNK , Sina GRAF , Anna-Lena MAYER , Anika STARKE , Frank ROEMER , Regina TROLLMANN , Matthias TÜRK , Arnd DÖRFLER , Michael UDER , Armin M. NAGEL , Susanne S. RAUH , Elisabetta GAZZERRO , Benjamin MARTY , Teresa GERHALTER
10:48 - 10:51 #54635 - PG154 Comparison of the detection rate for spontaneous muscular activities in neuromuscular patients using diffusion-weighted MRI versus clinically established methods.
PG154 Comparison of the detection rate for spontaneous muscular activities in neuromuscular patients using diffusion-weighted MRI versus clinically established methods.

Spontaneous muscular activities can be visualized by diffusion-weighted magnetic resonance imaging (DW-MRI) due to the three-dimensional incoherent motion pattern of contraction and relaxation within the muscular tissue. [1] Simultaneous surface electromyography (sEMG) has revealed a strong correlation between the measurable motor unit action potential on the skin surface and visible signal voids in DW-MRI. [2] Previous works have shown a high rate of visible spontaneous activities in patients suffering from amyotrophic lateral sclerosis (ALS) [3-5]. Furthermore, a good correlation to sEMG-detected fasciculations in ALS patients was revealed [3]. Preliminary work has also shown a good agreement to clinically established methods in healthy subjects [6]. However, only a small proportion of the healthy subjects showed a higher rate of spontaneous activity, which limits the interpretability of the findings. In this work, preliminary results of DW-MRI measurements in comparison to a standard neurophysiological examination protocol including needle electromyography (nEMG) and muscle ultrasound (US) in 10 ALS patients are presented.

DW-MRI: Time-series of DW-MRI were acquired from 10 patients diagnosed with ALS (age: 62.6±13.2 years, 2f/8m) on a 3T MR system (MAGNETOM Prismafit, Siemens Healthineers AG, Forchheim, Germany) using a diffusion-weighted stimulated-echo EPI sequence. Depending on the patient’s condition, the following muscle groups were examined by DW-MRI: m. tibialis anterior, m. gastrocnemius medialis, m. deltoideus and tongue muscle. Protocol parameters were chosen according to Schwartz et al. [4]: 500 repetitions of DW-MRI with diffusion direction in slice direction, TE = 27-28 ms, TR = 500 ms, slice-thickness of 6-8 mm, transversal slice orientation. Diffusion-sensitizing time was 28 ms or 145 ms depending on the muscular region. DW images were intra-subject registered before applying a neural network approach [7] for detection and segmentation of spontaneous muscular activities. The image analysis pipeline is given in Figure 1. The neural network was trained on 40 healthy subjects from previous studies [1,2,8,9]. All segmentation results were manually reviewed to ensure accurate classification. The rate of spontaneous activities was visualized as percentage Event Count Maps (pECMs), representing the sum of events over time normalized to the number of repetitions, using custom-developed MATLAB® tools (The MathWorks, Natick, MA, USA). Clinically established methods: As a reference for comparison with clinically established measurement methods, the patients were examined using a standard neurophysiological diagnostic protocol, including nEMG and US. Data analysis was performed by an experienced specialist during the examination, using a grading system for the spontaneous activity rate ranging from “–” to “+++”. The study protocol was approved by the local ethics review board of the medical faculty of the Eberhard Karls University and the University Hospital of Tübingen in 830/2020BO2.

Figure 2A shows the number of patient examinations across different muscle regions using two modalities (DW-MRI + nEMG or US) as well as all three modalities combined (DW-MRI + nEMG + US). Exemplary pECMs of Patient #2 for the shoulder region and lower leg muscles are depicted in Figure 2B. The visualized activity rate is in good accordance to the clinical scores using nEMG (tibialis anterior: -, deltoideus: +++) and US (tibialis anterior: +, deltoideus: ++). A comparison of the rate of detected spontaneous activity using DW-MRI and nEMG is shown in Figure 3 for muscles m. deltoideus (right) and m. tibialis anterior (right), while the corresponding results comparing DW-MRI and US for m. deltoideus (right), m. tibilias anterior (right), m. gastrocnemius medialis (right) and tongue muscle are presented in Figure 4.

A good overall agreement between different modalities in ALS patients is observed. However, it must be noted that in contrast to US and nEMG, DW-MRI was evaluated on the entire cross-sectional area of the muscle instead of a more localized area. Furthermore, it must be noted that the DW-MRI sequence has a certain visualization probability, which may result in some spontaneous activities not being visualized. The study is limited due to the relatively small sample size and only partial agreement of measurement positions across all three modalities.

This preliminary study including ALS patients shows a good agreement between DW-MRI and clinically established methods (nEMG and US) in different muscular regions. Further studies are required to investigate the potential advantages of improved visual representation in DW-MRI compared with nEMG or US. Additionally, investigations should be conducted regarding disease progression.
Martin SCHWARTZ (Tuebingen, Germany) , Petros MARTIROSIAN , Guenter STEIDLE , Bin YANG , Ludger SCHÖLS , Fritz SCHICK
10:51 - 10:54 #54448 - PG155 Quantitative EMC-T2 Mapping in Half-Marathon Runners: The Proportional Recovery Index as a Biomarker of Subclinical Cartilage Fatigue.
PG155 Quantitative EMC-T2 Mapping in Half-Marathon Runners: The Proportional Recovery Index as a Biomarker of Subclinical Cartilage Fatigue.

Articular cartilage (AC) has a limited regenerative capacity. The early detection of pre-structural changes is a challenge in preventing osteoarthritis. [1] Physical exercise induces dynamic variations in hydration and the type II collagen network organization, which are reflected in transverse relaxation times (T2). Traditionally, T2 mapping relies on the mono-exponential fitting of the signal from Multi-Echo Spin-Echo (MESE) sequences. This model assumes a simple signal decay, which is flawed in heterogeneous matrix tissues such as AC. The conventional method frequently requires excluding the first echo to force the mathematical curve fit, wasting fundamental data from the deep cartilage layer. Furthermore, the inevitable contamination by stimulated echoes generated by imperfect refocusing pulses and induced magnetic field (B1) inhomogeneities biases the calculation. [2] Clinically, this inaccuracy results in low diagnostic reliability, facilitating false negatives in the evaluation of early chondral damage. The Echo Modulation Curve (EMC) dictionary method emerges as a robust alternative by simulating signal decay through Bloch equations, incorporating real parameters and acquisition imperfections. This results in a true estimation of the T2 value, allowing accurate quantification of the biomechanical response of the tissue. The objective of this study was to evaluate the efficacy of EMC-T2 mapping in identifying acute physiological changes and recovery patterns in the AC of runners.

Eleven semi-professional runners (19 evaluated knees; age ≤ 45 years; KOOS functional score > 90) were recruited. The longitudinal design included three 3.0T MRI sessions (8-channel coil): rest (baseline), immediately after a 21.1 km run (less than 5 minutes post-effort), and control (one week of recovery). [3] The sagittal MESE sequence used TR = 2057ms, 10 equidistant echoes (5.9 to 59ms), matrix 220x206, FOV 150mm, and a constant refocusing angle of 125º. The T2 maps were estimated by computational matching with the EMC dictionary (Bloch simulations: T2 from 1 to 300ms; B1 from 60 to 140%; fixed T1 at 1000ms). Semi-automatic segmentation (ITK-SNAP) defined 25 regions of interest based on the WORMS system in three central slices of each femoral and tibial condyle. [5] Pixels with T2 > 100ms were excluded to avoid signal contamination by synovial fluid. Statistical analysis included repeated measures ANOVA and the calculation of the Proportional Recovery Index (PRI) to evaluate water homeostasis after 1 week.

Global T2 values at baseline were higher in males (43.6 ± 2.4ms) compared to females (41.5 ± 2.5ms). Immediately post-run, a significant global T2 reduction of -0.9 ms (-2.0%; p < 0.001) occurred. The most pronounced regional decreases occurred in the medial compartment: -5.3% in the medial condyle and -5.2% in the medial tibia (p < 0.001). The central section of the lateral tibia showed an isolated increase of +5.4% (p = 0.017). After one week of rest, the global T2 value returned to baseline levels (PRI = 1.0; p ≈ 1). However, the lateral condyle demonstrated a failure in homeostasis, maintaining a residual deficit of -4.7% (-2.0ms; p = 0.001; PRI = -0.1). This incomplete recovery was more severe in females (PRI = -0.4) compared to males (PRI = -0.1; p = 0.038). In the right medial tibia, a mechanism of hydrodynamic water overcompensation was observed (+6.3%; PRI = 2.6).

The acute T2 reduction in medial compartments reflects water exudation and collagen matrix compression along the primary load axis during running. The sub-millisecond sensitivity of the EMC method identified that while global homeostasis is achieved in 7 days, the lateral compartment remains in a refractory phase, particularly in females. This residual deficit suggests a biological vulnerability window in which the tissue has not recovered its load absorption capacity and is susceptible to structural injury. EMC's superiority lies in modeling B1 imperfections and stimulated echoes, capturing subtle hydrodynamic variations that mono-exponential fitting often obscures. Future convergence with Deep Learning and MR Fingerprinting will translate this precision into clinical workflows.

EMC-T2 mapping overcomes the physical limitations of conventional mono-exponential fitting, serving as a highly accurate biological dosimeter for articular cartilage. By utilizing the PRI, it is possible to detect subclinical vulnerability in the lateral compartment of runners, facilitating personalized training protocols and early intervention before irreversible morphological damage occurs.
Jose COELHO (Porto, Portugal) , Tiago FERNANDES , Sandra ALVES , Adélio VILAÇA , Rita NUNES , Luísa NOGUEIRA , António OLIVEIRA
10:54 - 10:57 #54662 - PG156 Biexponential 23Na T2* quantification in human skin at 3T: Influence of iterative partial volume correction.
PG156 Biexponential 23Na T2* quantification in human skin at 3T: Influence of iterative partial volume correction.

Quantitative ²³Na MRI of the skin is of growing interest for studying tissue sodium storage[1, 2], but is intrinsically difficult. In the skin the ²³Na signal decays biexponentially, with a very short component (T2,s*, ~0.7–4.8 ms) carrying ~60% of the signal and a longer component (T2,l* ~7.0-26 ms)[3]. The skin is also a thin layer (~1–1.8 mm[4]), comparable to or smaller than the imaging resolution. Even with center-out radial acquisition and ultra-short echo times (TE), signal decay during the readout cannot be neglected: it acts as a k-space apodization that broadens the point spread function (PSF) and drains signal out of the thin skin layer. This readout-decay bias on skin 23Na quantification has been demonstrated by Zhu et al. [4], who proposed that a within-volunteer relaxation measurement could enable individualized correction. We implement and evaluate such a correction: an iterative scheme that jointly estimates biexponential T2* and the PSF bias, correcting the apparent relaxation parameters for the effect that distorts them.

Acquisition. Ten healthy volunteers were measured on a 3T Siemens MAGNETOM Cima.X using a dual-tuned 1H/23Na surface coil. Measurements were approved by the local Ethical Review Board, and all volunteers provided informed written consent prior to the scan. 23Na data were acquired using a 3D density-adapted radial sequence (3D-DA-RAD). To achieve tight echo spacing while sampling as many short TE as possible, four multi-echo radial sequences with interleaved TEs were implemented, together yielding TE from 0.15 ms to 33.67 ms. [res: 3.0 mm; tread: 2 ms; FA: 80°; tmeas: 4x6 min; TR: 120 ms, tpulse: 0.2 ms] Iterative PSF correction. The skin was modelled as a thin slab of 1 mm thickness approximating skin thickness in the calf. For a given biexponential T2* model, two PSFs were simulated through the full reconstruction pipeline (Hamming filtering, density compensation, gridding, zero-filling, Fourier transform): one with the readout-decay apodization and one without. Their ratio at the evaluated voxel gives a per-echo correction factor isolating the PSF-broadening bias from the genuine T2* decay (Figure 1). This was applied iteratively: an initial biexponential fit (S₀, T2,s*, T2,l*, fast-fraction A) of the multi-echo signal gave a first T2* estimate; correction factors were computed and applied; the signal was re-fitted; and the procedure repeated until the change in the updated correction factors was <10-3.

Ten datasets were analysed. The iterative correction converged for all of them within ≤14 iterations (Figure 2). Before correction, the fitted relaxation times were T2,s* = 0.83 ± 0.11 ms and T2,l* = 17.35 ± 0.70 ms, with a fast-component fraction A = 0.43 ± 0.02. After correction both relaxation times were shorter, T2,s* = 0.73 ± 0.17 ms and T2,l* = 15.52 ± 1.20 ms - a decrease of 7.2% and 5.7%, respectively - and A increased to 0.48 ± 0.05. The reduction was of similar, modest magnitude for both components (Figure 3). Per-echo correction factors were largest at the shortest TE - where the fast component is still present and the readout roll-off steepest - and neared unity at late echoes [1.04 - 1.50] shown in Figure 4 for the first echos. The inter-subject standard deviation increased after correction for all three parameters.

Readout decay biases biexponential ²³Na relaxometry of skin: the broadened PSF lets signal from the brighter early echoes spill out of the thin skin layer, making the apparent decay slower than the true relaxation. Removing this bias shortened both relaxation times and raised the fast-component fraction. The increase in A is the direction expected if PSF smearing preferentially attenuates the fast component, which an uncorrected fit then under-weights. After correction A did not reach 0.6, which could be a result of intracellular, interstitial and macromolecule-bound environments contributing to the signal with different relaxation times[5]. The corrected relaxation times are physically plausible: both lie within the broad range reported for sodium biexponential relaxation by Perman et al. [3](short 0.7-4.8 ms, long 7.0-26.0 ms) and are of comparable order to the skin values measured by Stobbe et al. [6](T2,s ≈ 0.17 ms, T2,l ≈ 12.5 ms). Exact agreement is not expected as they were acquired on a different field strength (4.7T) and used shorter pulse duration, thus reducing the bias of relaxation of T2,s during the RF pulse. Its main limitations are the uniform-slab assumption which is not yet implemented.

Readout decay causes a systematic bias in biexponential ²³Na skin relaxometry. An iterative, within-volunteer PSF correction - requiring only a simulation of the acquisition's own reconstruction pipeline - removes this bias and is applicable to existing 3D-DA-RAD data, and may improve the accuracy and comparability of quantitative skin ²³Na MRI.
Jordan HÖHN (Erlangen, Germany) , Paula ACKERMANN , Tobias WILFERTH , Felix TYRACH , Anke DAHLMANN , Christoph KOPP , Michael UDER , Armin NAGEL
10:57 - 11:00 #54128 - PG157 The role of MRI in guiding treatment decision making for a complete ACL rupture in an elite Australian Rules Football athlete managed with the Cross Bracing Protocol.
PG157 The role of MRI in guiding treatment decision making for a complete ACL rupture in an elite Australian Rules Football athlete managed with the Cross Bracing Protocol.

Magnetic resonance imaging (MRI) is traditionally used to confirm anterior cruciate ligament (ACL) injury. Confirmation of ACL injury on MRI often results in management with surgical reconstruction which is established as the current standard of care for many ACL injuries to restore knee stability [1], This standard of care is founded on the notion that the ACL cannot regain continuity non-operatively. Emerging evidence suggests that selected ACL ruptures may spontaneously regain fibre continuity, and this process may be facilitated through non-operative bracing strategies such as the Cross Bracing Protocol (CBP) [2–5]. Therefore, in this evolving paradigm, MRI may play a key role beyond ACL injury diagnosis, and inform novel patient-specific injury classification, and longitudinal monitoring of treatment outcomes. This case report highlights the utility of serial longitudinal MRI in supporting imaging led, patient specific management of a complete ACL rupture in an elite athlete.

This is a single-case report. An elite female Australian rules football (AFL) athlete sustained an ACL rupture following a non contact hyperextension injury, with no previous history of knee pathology. MRI was performed during the acute injury phase using standard diagnostic sequences for knee injuries and a proton-density fat-saturated coronal oblique sequence aligned to the direction of the ACL. The novel Acute ACL Rupture Characteristics for Healing (A-ARCH) classification system was used to classify the ACL injury on the acute MRI, and the Follow-up ACL Restoration Classification of Healing (F-ARCH) classification system was used to confirm the type of restored ligament continuity on the follow-up imaging [5]. Based on the A-ARCH MRI findings and clinical consultation, the athlete undertook a 12 week CBP with structured rehabilitation. Serial follow-up MRI examinations at 3-, 12- and 36-months post injury, and patient reported outcome measures (PROMs), were used to guide management and assess clinical outcomes.

MRI was pivotal in confirming the diagnosis and classifying the rupture as a displaced ACL injury with potential restoration of ligament continuity, according to the A-ARCH system (classification: Type 2D, indicating partial disruption of the ACL attachments and the presence of displacement of ACL fibres outside of the intercondylar notch [5]). Follow-up MRI at 3 months post-injury demonstrated anatomical continuity of the ACL, supporting continuation of non-operative management. Subsequent MRI at 12 months confirmed further ligament maturation, normalising signal intensity and morphology, and supported clearance for return to elite AFL competition with a F-ARCH classification of Type normal thickness-taut (NT-Taut) (indicating normal thickness of the ACL and no presence of elongation of the ACL). A final MRI at 36 months demonstrated a contiguous, taut ACL with normal thickness, confirming sustained morphological restoration of the ligament. Serial imaging findings were consistent with clinical stability, with improving PROMs and the absence of further knee injuries or functional deficits following return to sport.

This case illustrates how MRI and novel ACL-specific classification systems may operate as a central decision making tool in modern ACL injury care. Serial MRI provided objective, reproducible evidence of ligament morphological restoration, in this case supporting a non operative management pathway in an elite athlete using the ARCH classification systems [5]. The classification of ACL injuries with MRI using the A-ARCH and F-ARCH system [5] may inform patient-specific diagnosis to support personalised treatment strategies for ACL injuries.

This case demonstrates the primary role of MRI in enabling and supporting imaging led patient-specific non-operative management of complete ACL rupture. Early high-resolution MRI, accurate injury classification, and serial follow-up imaging provided objective evidence of progressive ACL morphological restoration.
Keiley MEAD (Sydney, Australia) , Matthew DOWSETT , Zoe CASS , Tom CROSS , Rohan SABHARWAL , Peter KENCH , Giannotti NICOLA , Stephanie FILBAY
11:00 - 11:03 #54127 - PG158 MRI sequences for acute anterior cruciate ligament injury assessment: A systematic review.
PG158 MRI sequences for acute anterior cruciate ligament injury assessment: A systematic review.

Anterior cruciate ligament (ACL) injuries continue to increase globally and remain a major cause of knee instability and long-term morbidity [1]. Magnetic resonance imaging (MRI) is the gold standard non-invasive imaging technique for the diagnosis of acute ACL injury. However, conventional MRI sequences have limitations in accurately differentiating partial from complete ACL tears, particularly in the acute phase [2-3]. Novel applications of high-resolution MRI techniques, such as oblique ACL-parallel imaging, ultra-thin-slice acquisition, and three-dimensional (3D) volumetric sequences, may improve the morphological characterisation of ACL injuries in the acute phase. This systematic review aimed to evaluate the current landscape of MRI protocols used to assess acute ACL injury and to inform protocol optimisation.

A systematic literature review was conducted in accordance with PRISMA guidelines [4]. Five electronic databases were searched from January 2000 to August 2025 using combinations of the terms such as “anterior cruciate ligament” OR “ACL”, “magnetic resonance” OR “MRI”, and “sequence”, “parameter”, or “technique”. Two independent reviewers performed study screening and selection, data extraction, and quality assessment using the QUADAS-2 tool. Extracted variables included MRI field strength, sequence type and orientation, slice thickness, time from injury to imaging, diagnostic performance metrics, reference standard comparator (e.g. arthroscopy), and which ACL MRI classification systems were used for diagnosis.

The search identified 4,373 records, of which 82 studies met the inclusion criteria. Time from injury to MRI was infrequently reported (n=8, 10%), with a mean interval of 31.8 ± 36.6 days. The studies utilised 1.5T (n=34, 41%) or 3T (n=27, 33%) MRI systems, with no substantial difference in pooled diagnostic accuracy for ACL injury classification between field strengths (1.5T: 90.2%; 3T: 91.7%). Across all protocols, MRI demonstrated a pooled sensitivity of 88.0%, a specificity of 91.1%, and an accuracy of 91.6% for ACL injury detection. Six studies (7%) reported 100% sensitivity, specificity, and accuracy, employing image optimisation strategies, including oblique imaging parallel to the ACL, ultra-thin-slice acquisitions (<2 mm), 3D volumetric sequences, and diffusion-weighted imaging with apparent diffusion coefficient mapping (Figure 1). The classification systems used for reporting ACL injuries varied considerably, with 2-point classification systems (n=44, 54%) demonstrating higher pooled accuracy (92.7%) than 3-point (n=26, 32%; 90.0%) and 4-point systems (n=8, 10%; 88.5%).

This review highlights substantial heterogeneity in MRI acquisition parameters, reporting practices, and ACL classification systems. While conventional MRI techniques demonstrate good overall diagnostic performance for ACL injury detection, novel applications of high-resolution MRI techniques appear particularly beneficial for improving sensitivity in partial ACL tear detection and enhancing morphological assessment. Finally, the observed reduction in accuracy with more complex and granular classification systems underscores current challenges associated with the detailed morphological characterisation of the acute ACL injury.

Despite substantial variability in study designs and MRI protocols, this review suggests that incorporating oblique ACL-parallel sequences, ultra-thin-slice imaging, and 3D volumetric acquisitions into conventional knee MRI protocols may improve diagnostic accuracy for acute ACL injury and enable more detailed morphological characterisation. Future research should prioritise protocol and reporting standardisation to facilitate improved diagnosis and personalised ACL injury management pathways.
Keiley MEAD (Sydney, Australia) , Tom CROSS , Rohan SABHARWAL , Peter KENCH , Giannotti NICOLA
11:03 - 11:06 #53350 - PG159 Quantification of bound water proton density in the tibial cortex at 1.5T.
PG159 Quantification of bound water proton density in the tibial cortex at 1.5T.

Osteoporosis (OP) is a prevalent bone disease with fractures linked to high mortality [1]. Magnetic resonance (MR)-derived parameters, including collagen-bound water proton density (BWPD) measured with ultra-short echo time (UTE) sequences, have been investigated as surrogate markers for OP in the tibial cortex at 3T [2, 3]. In contrast to dual-energy x-ray absorptiometry (DXA), which primarily assesses bone mineral density, MR-based techniques can directly assess bone water, an important contributor to bone mechanics [4]. This study investigates the feasibility of BWPD quantification at the widely available clinical field strength of 1.5T. To this end, relaxation parameters were established for a calibration sample, and BWPD measurements in the tibial cortex were performed in a young healthy volunteer at 1.5T and compared with measurements in the same volunteer at 3T and in a patient with OP at 1.5T.

We implemented variable flip-angle (VFA-)UTE [5], variable-TE (VTE-)UTE [6], and adiabatic inversion recovery (IR-)UTE sequences [7] using the open-source Pulseq framework [8]. All sequences employed an isotropic radial 3D center-out trajectory, rectangular excitation pulses with RF-spoiling [9], and a scan time of 5 minutes (see also Figure 1 and Table 1). A calibration sample (80%/20% D₂O/H₂O, 22 mM of MnCl₂) with known proton density was used for reference (ρ_ref). Measurements were conducted on 1.5T and 3T clinical scanners (Magnetom Avantoᶠⁱᵗ and Magnetom Prismaᶠⁱᵗ, Siemens Healthineers, Forchheim, Germany). To determine the relaxation times required to deduce a proton density map [2, 10] at 1.5T, five VFA-UTE scans were performed on the calibration sample (16-channel wrist coil), and five VTE-UTE scans were acquired from the tibia of a 27-year-old healthy female volunteer (27F) alongside the calibration sample. For BWPD assessment, acquisitions comprising two VTE-UTE scans and an IR-UTE scan of the tibia with the calibration sample were performed on a 28-year-old healthy female (28F) and a 73-year-old female patient with OP (73F; DXA scan 11 days prior to MRI, averaged T-score of −2.6 for the hip). At 3T, corresponding VTE-UTE and IR-UTE acquisitions were performed on 28F. Tibia imaging was centered at 38% of the diaphyseal line from the right medial malleolus (respective 15-channel transmit/receive knee coil) [2]. Reconstructions were performed using a 3D NUFFT with density compensation [11], and constant trajectory delays were applied to correct for gradient imperfections, minimizing inaccuracies in BWPD assessment [12]. Equations (1) (single-component) [13] and (2) (bi-component) [14] were used to determine T₂* values, while Equation (3) [15], including (4, 5) [16], was applied for T₁, all based on ROI intensities. For BWPD assessment in 28F and 73F, BWPD in a sagittal slice (registered for 28F) of the tibial cortex was calculated based on the IR-UTE images using Equation (6) [2, 10], incorporating the intensity of the calibration sample (I_ref), the obtained and literature-based relaxation times: T₁ of 82.6 ms for bone at 1.5T [17]; T₁ of 134 ms [14] and T₂* of 0.39 ms [17] for bone at 3T; T₁ of 5 ms and T₂* of 0.4 ms for the calibration sample at 3T [13]. Segmentation was carried out on UTE images (TE = 5 ms) and subsequently transferred to the corresponding IR-UTE images. All implementations were performed in MATLAB and related toolboxes (The MathWorks, Natick, MA, USA).

Single-component VTE fitting resulted in T₂* values of 0.56 ± 0.05 ms for the calibration sample and 0.52 ± 0.16 ms for the tibial cortex. Bi-component fitting of the tibial cortex resulted in T₂* values of 0.43 ± 0.06 ms for bound water (BW) and 7.66 ± 3.92 ms for pore water (PW), with a BW signal fraction of 76 ± 4 %. VFA fitting of the calibration sample yielded a T₁ of 6.73 ± 0.38 ms. Average BWPD values were 17.47 mol ¹H/L and 17.65 mol ¹H/L in the young healthy volunteer at 3T and 1.5T, respectively, and 13.96 mol ¹H/L in the patient with OP at 1.5T.

The T₂* value and signal fraction of BW from bi-component fitting agreed with previous ex vivo 1.5T [6] and in vivo 3T [17, 18] results. The obtained calibration sample relaxation times enabled BWPD measurements in the tibial cortex of a young healthy volunteer and a patient with OP at 1.5T, aligning with published in vivo data at 3T [2, 3]. Comparable BWPD in the healthy volunteer was observed at 1.5T and 3T despite intentionally different IR-UTE sequence parameters, suggesting methodological robustness. Further work should include larger cohorts and osteopenic subjects, and expand to clinically relevant trabecular regions such as the hip and lumbar spine.

This study demonstrates the feasibility of BWPD quantification in the tibial cortex at 1.5T using (IR-)UTE-based MRI. Differences between healthy and osteoporotic bone tissue can be detected, and the comparable results at 1.5T and 3T for the same volunteer indicate consistent BWPD quantification across these field strengths.
Philipp Hans NUNN (Würzburg, Germany) , Natalie HASENAUER , Sebastian SCHEIDEL , Johannes TRAN-GIA , Tobias WECH
11:06 - 11:09 #54328 - PG160 Multi-Parametric Mapping of the vertebral bone marrow using Radial MP2RAGE: A free breathing approach.
PG160 Multi-Parametric Mapping of the vertebral bone marrow using Radial MP2RAGE: A free breathing approach.

Quantitative MRI of the abdominal organs is challenging because of respiratory motion. Also, the presence of infiltrated fat within these organs largely decreases longitudinal relaxation time [1]. To address these challenges, we designed an MP2RAGE-based method that enables large coverage abdominal imaging in free-breathing conditions while providing water- and fat-specific T1 along with the proton density fat fraction (PDFF) for diagnosis and monitoring of abdominal pathologies [2]. In this study, we evaluate the potential of this technique specifically for the examination of the spinal bone marrow, which serves the essential function of hematopoiesis [3]. Examining the vertebral bone marrow with quantitative MRI gives insights on the functioning state of this process and helps understanding its role in different pathologies [4].

The abdominal MP2RAGE method relies on three integrated technical pillars (Fig.1): 1. 3D Radial "Kooshball" Sampling[5]: Unlike standard cartesian imaging, this technique samples the center of k-space repeatedly throughout the scan. This provides inherent robustness to motion, enabling high-resolution 3D imaging of the spine without the need for patient breath-holding or external gating. 2. Binomial RF Pulses[6]: To separate the water and fat signals, the sequence employs frequency selective binomial pulses. These pulses with 6 sub-pulses selectively excite either water or fat protons. By alternating these pulses within the echo trains, water- and fat-specific acquisitions are obtained simultaneously. 3. The MP2RAGE framework[7]: By acquiring two images for each components at two different inversion times after a single inversion pulse, water- and fat-specific T1 can be computed and subsequently used to the PDFF. Test/retest experiments were performed on 5 volunteers. The volunteers came out of the scanner between the two acquisitions and were asked to breathe normally. Key parameters were: TE/TReff=3.45/20.2ms, longTR=5s ; ETLeff= 64, a1/a2=4°/4°, FOV=359mm3, 9216 spokes per component, TI1/TI2=668/2200ms, voxel size 1.4mm isotropic, acquisition time of 12min. Data were reconstructed with the “pics” framework of the BART library [8] . The component-specific T1 and the PDFF of the bone marrow across the vertebraes were measured in 7 circular ROIs manually placed on each vertebra between T11 and L5. Mean and standard deviations within the ROIs were computed for each of the estimated parameters. Separate linear mixed-effects models were fitted for PDFF, water- and fat-specific T1 including age, body mass index (BMI), and vertebral position as fixed effects, with a random intercept for participants. The coefficient of repeatability (CR) was computed as 1.96 times the standard deviation of the differences, according to the Bland-Altman method. The CR was compared to the repeatability results of a similar study [9] with breath-hold acquisitions.

The large FOV enabled the vizualisation of all the vertebraes from T11 to L5 in all volunteers (Fig2A). PDFF demonstrated a highly significant increase from T11 to L5 (Fig.2B), whereas the vertebral position did not show a significant effect on water- and fat-specific T1. Age also had a significant effect on PDFF and fat-specific T1, which respectively increased and decreased with age (Fig.2C). BMI was found to be inversely correlated with the water-specific T1 of the vertebral bone marrow (Fig.2D). CR were comparable to a similar study under breath-hold [9]: 3% for the PDFF, 145 ms and 205 ms for the fat and water-specific T1, respectively (Fig.3). The second lumbar vertebra of one volunteer (S4) showed a decrease in PDFF (Fig 2B). We could also observe an increase of the water-specific T1 in the secund lumbar vertebra of S5 (which was not taken into account in Fig.2, as located outside of the ROIs) (Fig 4).

Results of this study were consistent with previous findings in the literature. Indeed PDFF is known to increase from L1 to L5 [9,10] and also with age [10,11] as red marrow is gradually replaced by yellow marrow [3]. In line with prior studies [12], no correlation was found between the BMI and the PDFF. However we observed that water-specific T1 decreased significantly with BMI. To our knowledge, no previous studies have investigated this relationship. We observed a decrease of the fat specific T1 with age which could be explained by the age-related increase of the unsaturated index [13]. Indeed, the fat-specific T1 of the proposed method is a weighted combination of the T1 of methylene (1.3ppm, T1~294ms[14]), methyl (0.9ppm, T1~553ms[14]), beta-carboxyl groups (1.6ppm, T1~248 ms[14]) and the alpha-olefinic (2ppm, T1~251ms[14]), the latter being only present in unsatured fatty acids[15]. Abnormal values (PDFF or water-specific T1) in two subjects suggested the presence of atypical hemangiomas[16].

The abdominal MP2RAGE is a promising alternative to standard breath-holds acquisitions for the quantitative mapping of the vertebral bone marrow.
Nadège CORBIN (TALENCE) , François MAINGAULT , Aurélien TROTIER , Emile KADALIE , Laurence DALLET , Marc BIRAN , Sylvain MIRAUX , Eric THIAUDIÈRE , William LEFRANÇOIS
11:09 - 11:12 #54213 - PG161 Early detection of bone metastases in prostate cancer using advanced whole-body dMRI.
PG161 Early detection of bone metastases in prostate cancer using advanced whole-body dMRI.

Bone is a common site of metastasis across solid tumours, particularly in breast and prostate cancer (PC), with skeletal involvement in up to 90% of advanced PC patients, leading to increased morbidity and mortality [1, 2]. Radiological imaging is the primary tool for diagnosing bone metastasis in clinical practice. However, its use remains suboptimal. The 5-year survival rate of PC patients with bone metastasis is only ~30% [2], highlighting the need for early detection biomarkers to enable timely clinical interventions. Restriction Spectrum Imaging (RSI) has shown to better characterize bone diffusion than conventional diffusion-weighted methods [3]. When applied to whole-body diffusion MRI (WB-dMRI), RSI enables the extraction of microstructural properties across the entire skeleton, offering the potential to detect early changes associated with bone metastases before they become radiologically visible. Here, we evaluated the potential of RSI applied to WB-dMRI to detect pre-metastatic microstructural changes in bone and to predict future bone metastasis risk in PC patients.

WB-dMRI scans were collected from PC patients enrolled in a prospective clinical study (ClinicalTrials.gov: NCT03440554). The MRI protocol included four b-values [0-2000] s/mm2 sampled at 1, 6, 6, and 12 gradient directions. MR data were denoised (MP-PCA [4]), Gibbs ringing was mitigated [5], and volumes were normalized to the mean b=0. Bones were automatically delineated on the WB-dMRI scans using TotalSegmentator [6], and the RSI model was fitted to the delineated bones. RSI estimates the signal fraction of 4 diffusion compartments: restricted (C1), hindered (C2), free (C3) and pseudo-diffusion (flow; C4). We identified patients whose WB-dMRI scans preceded the development of new bone metastases, and bones that became metastatic after WB-dMRI were annotated. To identify early microstructural alterations associated with metastatic progression, we conducted a 1:2 case-control analysis matched by anatomical location. Pre-metastatic bones were compared with bones that remained free of metastatic disease during follow-up. This design enabled the characterization of imaging biomarkers predictive of future metastatic involvement before metastasis became radiologically evident. We then studied the temporal evolution of these biomarkers in pre-metastatic bones from the WB-dMRI acquisition date to the eventual metastases’ detection to analyse the evolution of early microstructural changes and define the time window when biomarkers are most informative. Finally, we trained a logistic regression model using 5-fold cross-validation on all delineated bones to predict the probability of a bone developing future metastasis based on the RSI metrics.

A total of 2190 bones from 72 WB-dMRI scans were delineated and fitted with RSI. Of these, 133 bones became metastatic after WB-dMRI and 266 non-metastatic bones were randomly selected for the matched case-control analysis. Pre-metastatic bones showed significantly higher C2 (hindered diffusion compartment), while C1 (restricted diffusion compartment) remained similar between groups (Fig. 1A-B). These findings may reflect that cellular density had not yet increased at this stage, while early, pre-metastatic bone marrow remodelling may have expanded the extracellular space compared with normal bone. The free (C3) and pseudo diffusion (C4) compartments also remained similar between groups, highlighting that the main microstructural changes occur within the hindered, extracellular space. Moreover, in pre-metastatic bones, C2 was higher at imaging timepoints closer to metastasis diagnosis, indicating progressive microstructural change (Fig. 1C). Finally, on the held-out test sets, the model to predict bone-wise risk of metastasis obtained an AUC of 0.65±0.05 (mean±s.d.), demonstrating the potential of RSI to inform early bone metastasis risk prediction models (Fig. 1D).

Our results suggest that RSI diffusion metrics from WB-dMRI can detect subtle pre-metastatic changes in bone microstructure, with a consistent increase in the hindered diffusion compartment prior to radiological metastasis, while restricted diffusion remains unchanged. This pattern is compatible with early bone marrow remodeling and expansion of extracellular space preceding overt tumor infiltration, and it becomes more pronounced closer to the time of metastasis diagnosis. Interpretation of these findings is limited by potential confounding effects from heterogeneous patient treatments and follow-up (e.g., systemic therapy or bone-targeted agents), which may also alter bone marrow diffusion properties.

RSI applied to WB-dMRI shows promise for detecting early bone microstructural changes associated with future metastasis, potentially supporting earlier clinical intervention. Future work is warranted validate these findings in larger, treatment-stratified longitudinal cohorts to better isolate biological signal and improve predictive performance.
Carlos MACARRO (Barcelona, Spain) , Aran ZAKERI , Christopher C. COLIN , Michael E. HAHN , Francesco GRUSSU , Tyler M. SEIBERT , Raquel PEREZ-LOPEZ
11:12 - 11:15 #54469 - PG162 Voxel-wise modeling of associations between lumbar spine MRI and clinical data.
PG162 Voxel-wise modeling of associations between lumbar spine MRI and clinical data.

Data-driven methods for magnetic resonance imaging (MRI) analysis are becoming increasingly common in lumbar spine applications and can provide new insights into disease-related imaging patterns [1]. However, radiological metrics used for the diagnosis of degenerative spinal disorders typically focus on gross morphological features, many of which are also prevalent in asymptomatic individuals, thereby increasing the diagnostic challenge [2]. This challenge motivates the development of new data-driven analytical methods. This study aimed to develop a data-driven, voxel-wise method for exploratory group-level analysis of the lumbar spine and to validate the method in a large cohort of patients with lumbar spinal stenosis (LSS).

A method for voxel-wise analysis was developed using image registration and signal normalization to enable direct comparisons between subjects, combined with general linear modeling and non-parametric statistical interference to assess associations between MR signal intensities and tabular clinical data, a methodology based on the Imiomics framework [3] combined with analytical tools [4, 5] common in fMRI analyses. The image processing pipeline was divided into pre-processing and statistical analysis. The pre-processing pipeline (Figure 1) operates on sagittal MRI scans assembled into volumes beginning with segmentation of discs, vertebrae, and spinal canal using TotalSpineSeg [6]; spine straightening; masking volumes to a convex region enclosing the vertebrae; and normalization of signal intensities by scaling to the mode of the segmented spinal canal. Each volume is then registered to a pre-processed reference volume using Deform [7, 8]. Finally, signal intensities in each volume are normalized to the reference volume by computing tissue-specific histogram matching mappings for discs, vertebrae, spinal canal, and remaining tissues, and combining them into a global mapping. The statistical analysis is performed by defining a general linear model, Y = βX + ϵ, modelling the signal intensities, Y, as a linear model depending on tabular clinical data (predictors), X. Two-sided tests are performed to evaluate whether the model parameters, β, differ significantly from zero. The family-wise error rate and multiple testing are addressed using permutation testing and threshold-free cluster enhancement. Significant effects are visualized using Z-score maps. The method was validated by assessing whether known clinical associations in T1-weighted (T1w) and T2-weighted (T2w) MR volumes could be detected in a dataset of lumbar spinal stenosis (LSS) patients [9], using age, gender, and Oswestry Disability Index (ODI; a metric reflecting disability level) as predictors. The expected associations included decreased T2w signal intensity of the inner region of the discs (dehydration of nucleus pulposus) associated with aging [10]. Increased T1w and T2w signal intensity in paravertebral muscles (higher fat concentration) associated with female gender [11]. A total of 5,000 permutations were performed, and statistical significance was assessed at p < 0.05. Reference volumes for image registration and signal normalization were obtained from a healthy subject without any pronounced spine degeneration.

The included subjects (n = 535) had a median age of 68 years (IQR: 61.0 - 73.0), included 48.4 % women, and had a median ODI of 33.3 (IQR: 22.0 - 44.0). Of the included subjects, 526 T1w and 508 T2w volumes were included. Significant associations were identified between MR signal intensities and the predictors age and gender, supporting the feasibility of the method (Figure 2 and Table 1). Associations with ODI were also found.

Expected associations between MR signal intensities and predictors age and gender were found, supporting the validity of the method. Further, the Z-score maps provided visual feedback, highlighting regions of tissue change associated with age, gender, and ODI. Despite these promising findings, voxel-wise comparison of anatomical MR volumes across subjects and scanners remains challenging, as normalization techniques are required to make voxel intensities comparable, potentially hiding or reinforcing associations. Nevertheless, because these contrasts are routinely acquired in clinical practice, they may facilitate clinical translation. Validation was performed using a relatively constrained study design with few predictors. Even so, the results demonstrate the feasibility of the method, which is based on well-established and validated analytical tools from related imaging fields, providing a foundation for future studies. Future studies may include additional predictors, other patient groups, different MR contrasts, or analyses investigating associations with multiple volumes acquired from the same subject.

The present study proposes a promising method that, on a group-level, determines significant associations between tabular clinical data and MR image signal intensities voxel-by-voxel.
Alice NILSSON (Gothenburg, Sweden) , Christian WALDENBERG , Erland HERMANSEN , Hanna HEBELKA , Hasan BANITALEBI , Helena BRISBY , Kari INDREKVAM , Kerstin LAGERSTRAND
11:15 - 12:00 Visit posters PG153-PG162.
Sala d’Assaig

"Friday 02 October"

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E22
10:45 - 12:00

GliMR
Past, Present and Future

Moderator: Vittorio STUMPO (Moderator, Zurich, Switzerland)
10:45 - 10:55 History of GliMR. Esther WARNERT (Speaker, The Netherlands)
10:55 - 11:05 Future of GliMR. Vera KEIL (Consultant) (Speaker, Amsterdam, The Netherlands)
11:05 - 11:20 YIA finalist 1.
11:20 - 11:35 YIA finalist 2.
11:35 - 11:50 YIA finalist 3.
11:50 - 12:00 Meet the attendees.
Sala 1
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I21
11:15 - 12:00

Poster 5
FT5 MR Hardware | MR Safety

11:15 - 12:00 #54108 - P297 Improving B1 Homogeneity in Clinical MRI Systems using a Fractal Metamaterial.
P297 Improving B1 Homogeneity in Clinical MRI Systems using a Fractal Metamaterial.

Magnetic resonance imaging (MRI) uses non-ionizing radiation for high-quality images, but at high magnetic fields (≥3T), radiofrequency (RF) field (B1) inhomogeneities cause signal "hot spots" and "dark zones" due to reduced RF wavelength [1]. These artifacts degrade image quality and can hinder accurate diagnoses. Metamaterials artificial structures with unique electromagnetic properties not found in nature offer a promising solution for manipulating RF waves [2, 3]. This project aims to design, simulate, and fabricate a fractal metamaterial based on the Hilbert curve to improve RF field uniformity in high-field clinical MRI systems. By integrating this metamaterial, we expect enhanced RF field homogeneity, leading to higher-quality images and more reliable diagnostic outcomes.

A fractal metamaterial based on the fifth-order Hilbert curve was designed and simulated using electromagnetic simulation software. The Hilbert curve geometry was selected for its space-filling properties and its ability to exhibit resonant behavior at specific frequencies. The resonant frequency, fm, of a Hilbert metamaterial units is given by Chen et al.'s formula [3]: f_m=\frac{mc}{2(2^N+1)a} \, \, (1) where c is the speed of light, N is the order and m is the harmonic number. Using our parameter (a = 30 cm, N = 5, m = 2) the theoretical frequency was calculated to be 147 MHz. The metamaterials were fabricated using standard printed circuit board (FR4 substrate: e= 2.35, tan(delta)=0.008, 1 mm thickness) techniques on a suitable substrate. Based on this, two metamaterials of the same order were constructed: the first was a single square metamaterial with a side length of 15 cm, and the second consisted of three square elements (each 4 cm × 4 cm), arranged in a rectangular shape 4 cm wide and 15 cm long. The Fig. 1 shows the two metamaterial prototypes and their dimensions. To test the viability of these metamaterials, a spherical commercial phantom along with the prototypes was placed inside two 3T clinical MRI systems (Ingenia 3T and Achieva 3T, Philips Medical Systems, Best, NL) together with conventional RF coils. A single surface coil was used for transmission, and a coil array was used for reception. Figure 2 shows the experimental setup. Phantom images were acquired using standard gradient echo sequences both with and without the metamaterial. Acquisition parameters were optimized for each experiment: TR = 500 ms, TE = 15 ms, matrix size = 256 times 256, FOV = 23 x 23 x 5 cm, slice thickness = 5 mm, and flip angle = 900. SNR maps, covariance maps, and uniformity profiles were computed to evaluate the impact of the metamaterial on field homogeneity and temporal stability.

Phantom images (see Fig. 3.a-c) show good image quality upon simple visual inspection. The coupling of the designed fifth-order Hilbert curve metamaterials with the RF coils of a 3T scanner leads to a more homogeneous redistribution of the field compared to the case without a metamaterial. SNR maps were computed for 20 slices to study the behavior of this specific RF coil–metamaterial setup, allowing evaluation of the spatial variation of this metric within the phantom. A change in signal distribution due to the presence of the metamaterial was observed. Fig. 3.d-f show the corresponding SNR maps obtained from the phantom images. A plot of SNR versus slice number was also generated to analyze the variation of this parameter across slices.

Fig. 3.g presents the comparison plot, where a notable decrease is observed for design 1 compared to design 2 and the no-metamaterial case. Additionally, design 2 shows a substantial decrement in the first half of the phantom images but an improvement in the second half. This clearly indicates that design 2 has greater potential to increase both field strength and uniformity. Furthermore, covariance maps were used to evaluate the temporal variation of the MR signal, revealing that employing a metamaterial also helps maintain the temporal homogeneity of the field (see Fig. 3.h-i). A comparison plot for covariance is shown in Fig. 3.k. Based on Fig. 3.g, a preferred location was identified to optimally exploit the metamaterial's properties.

The fifth-order Hilbert curve metamaterial coupled with 3T RF coils redistributes the radiofrequency field more homogeneously than without it. SNR maps revealed spatial signal changes in the phantom due to the metamaterial. Covariance maps showed reduced temporal variation, indicating improved temporal field homogeneity. Metamaterial placement matters. Acknowledgments. We thank Raúl Osorio Durán and the Instituto Nacional de Psiquiatría, as well as Sarael Alcauter Solórzano, Erick Pasaye, and Luis Concha at UNAM’s Juriquilla MRI unit, for scanner access. Support came from PAPIIT-UNAM grant IN115825 and a UNAM graduate scholarship.
Edith TELLEZ , Saul RIVERA DE LA LUZ , Alfredo O RODRIGUEZ (Mexico City, Mexico) , Sergio SOLIS-NAJERA
11:15 - 12:00 #54640 - P298 Enhancing open-ended dome-shaped RF coils using brim structures.
P298 Enhancing open-ended dome-shaped RF coils using brim structures.

Low SNR remains a central technical challenge in both low-field MRI and magnetic particle imaging (MPI) [1][2]. Close-fitting RF coils with high detection efficiency are a key approach to improving sensitivity and enabling higher-quality imaging. In a variety of low-field MRI applications such as breast or head imaging, dome- or similarly shaped RF coils are required. However, the RF field tends to become weaker and less homogeneous near the dome opening. According to Rosen et al. [3], the field strength decreases by 30% within 3 cm beyond the dome opening. Therefore, this work introduces a brim structure at the dome opening to increase the available routing area. Three cases were compared: Design A with a 50 mm brim, Design B without a brim but with wire overlap allowed (not manufacturable), and a no-brim reference with clearance limits (Design C). This work focuses on radial field directions, but the approach can similarly be applied to axial or other B1 directions. Experimental validation will be completed by the time of the conference.

The coil geometry and region of interest (ROI) were based on the work of Meng et al. [4], who built a dome-shaped RF coil in a 54 mT scanner with radial B1 direction. The current loops were optimized on the surface of a hemispherical cap with 115 mm radius mounted on top of a cylinder with a height of 90 mm. The ROI is a sphere with a radius of 75 mm placed in the center of the coil. The current patterns were computed using a stream-function approach, converted into contour loops consisting of litz wire, and evaluated using a Biot-Savart field solver over the ROI [5]. A random-forest surrogate optimization sampled the parameter space consisting of number of turns, regularization, and field-weight parameters, while balancing B1 efficiency, spatial CV, bend quality, and wire clearance [6]. Manufacturability was assessed from loop count, clearance, and bend quality.

Figure 1 shows the full relation between inhomogeneity CV = std(B1−)/mean(B1−) and B1 efficiency B1-/√P for all three designs. The fitted lower Pareto front for each group reveals the best achievable efficiency-homogeneity tradeoff across a larger parameter space. Design C exhibits the highest inhomogeneity across all efficiency levels while the Pareto fronts for Designs A and B are systematically shifted downward. As indicated in Figure 1, designs with similar B1 efficiency or homogeneity will be compared. The three designs are visualized in Figure 2 with the metrics in Table 1. At a balanced operating point in our design space, Design A reached a B1 efficiency of 47.90 µT/√W at an inhomogeneity of CV = 3.21%. The minimum wire clearance was 1.46 mm. The lower ROI remained well supported, with a bottom-to-top B1- ratio of 0.957. Design B reached similar performance with a B1 efficiency of 46.31 µT/√W, an inhomogeneity CV = 3.39%, and a bottom-to-top B1- ratio of 0.956. Its minimum clearance was -0.93 mm, indicating wire overlap and confirming that this solution is not manufacturable. Design C shows that manufacturability without a brim requires fewer loops. This leads to a reduction in field quality: At constant B1 efficiency, the inhomogeneity is doubled to CV = 6.56% with a bottom-to-top B1- ratio of 0.867 (Design C1). When prioritizing homogeneity, the B1 efficiency drops to 31.71 µT/√W (Design C2).

The comparison between Designs B and C isolates the effect that more loops especially at the bottom of a dome-shaped RF coil preserves the field quality in this region. The clearance-limited Design C shows the outcome when routing space is removed: fewer loops reduce current degrees of freedom near the lower ROI, and both efficiency and homogeneity degrade together. Meng et al. [4] compared two RF coils: One with radial and one with axial field direction. This comparison reveals a gap between the two designs. The maximum B1 efficiency of the axial design, which resembles a capped solenoid, is at 27.06 µT/√W at a CV of 4.00%. The radial design, which is similar to our Design C, reaches 17.65 µT/√W at a CV of 5.45%. For B1 efficiencies below 53 µT/√W, Design A’s Pareto front matches or improves upon that of Design B. However, achieving a B1- efficiency as high as that of Design B has not been feasible so far, which may be caused by the fillet at the brim’s inner edge, which is the bottleneck for the number of loops because of the clearance constraint.

In this work, the effect of a brim structure on a dome-shaped RF coil with radial B1 direction was demonstrated. The brim improved both the B1 efficiency and homogeneity, while also allowing for a manufacturable design. This concept can be adapted to many other applications where the coil opening is a critical area for field quality.
Felix DAHMS (Aachen, Germany) , Marian FREI , Marcel OCHSENDORF , Kostiantyn LAVRONENKO , Emilia YIN-GROSSMANN , Yannick KUHL , Volkmar SCHULZ
11:15 - 12:00 #54620 - P299 18-Channel Wearable Twisted-Pair Coil Array with Integrated Dielectric Resonators for Lower Extremity MRI at 7 T.
P299 18-Channel Wearable Twisted-Pair Coil Array with Integrated Dielectric Resonators for Lower Extremity MRI at 7 T.

Ultra-high-field MRI at 7T provides substantial signal-to-noise ratio (SNR) gains over conventional clinical field strengths, with SNR scaling nearly quadratically with B0 [1]. These gains enable high-resolution imaging of the lower extremities, which is particularly relevant for disorders such as diabetic polyneuropathy, affecting nearly 50% of individuals with diabetes during their lifetime [2]. A major unmet clinical need is the visualization of peripheral nerve fascicular organization and high-resolution imaging of associated lesions and microvascular structures that remain inaccessible with standard 3 T MRI. Addressing this challenge requires dedicated RF coil technology capable of delivering exceptional receive sensitivity and anatomical conformity. A recent study demonstrated that the combination of wearable twisted-pair (TP) coils, ultra-high-permittivity dielectric resonators (DRs), and dipole antennas can achieve substantial SNR improvements for calf imaging at 7 T [3]. Building on this concept, this work presents the first multi-row wearable receive array integrating TP coils with high-permittivity DRs and a four-channel dipole antenna array for combined transmit/receive operation at 7T.

Rectangular and circular TP coil geometries were explored. For the rectangular geometry, a coil of length 27.9 cm with 26 twists was considered, both with and without an integrated DR (rectangular, dimensions 90 mm × 44 mm × 5 mm). Similarly, the circular geometry was evaluated for a coil of length 22.5 cm with 20 twists, again with and without an integrated DR (cylindrical, with radius 30 mm and thickness 5 mm). Both DRs had εr = 1070 and two different electrical conductivity σ values: 0.2 S/m (rectangular) and 0.08 S/m (cylindrical), representing the existing, available DRs [4]. Those configurations were evaluated via finite-difference time-domain (FDTD) electromagnetic simulations in Sim4Life (ZMT, Zurich). A cylindrical phantom (diameter = 110 mm, εr = 78, σ = 0.65 S/m) mimicking the lower leg was used. SNR was computed using the optimal channel combination [5]. Custom-printed circuit boards for tuning, matching, and active PIN-diode detuning circuits were designed [6]. S-parameters were measured using a four-port vector network analyzer without and with a 4-channel dipole antenna array [3]. Transmit field (B1+) mapping experiments at 7T (Siemens MAGNETOM Terra.X) for the 4-channel dipole antenna array were performed using a Turbo-FLASH technique.

One-element simulations first showed that the circular TP coil with DR outperformed other geometries, increasing the receive field B₁⁻ by 2.5-fold near the phantom surface compared to the coils without DRs (Fig. 1). Two-element simulations revealed that the circular TP coils with DRs also exhibited the lowest coupling below -11 dB (Fig. 2). It was thus selected and extended to one-, two-, and three-row arrays up to 18 channels, each row containing six elements. The six-element row, combined with the dipole array, achieved average inter-element coupling below −10.5 dB and a mean matching better than −25 dB. Adding the dipole array increased the mean SNR by 18% and the minimum central SNR by 27% (Fig. 3). The experimental B₁⁺ map for the 4-channel dipole array in the presence of six TP coils with integrated DRs showed good qualitative agreement with simulations (Fig. 4). The constructed three-row 18-channel TP array demonstrated nearest-neighbor coupling levels were predominantly in the −11 to −13 dB range. Reflection coefficients were between −14 and −22 dB, with inter-row coupling generally below −25 dB (Fig. 4).

The proposed RF coil design exploits the intrinsic self-decoupling of TP elements [7] combined with the B₁⁺-enhancing properties of high-permittivity DRs [4], enabling efficient tuning, matching, and strong inter-element isolation without additional decoupling networks. The proposed array achieves higher central B₁⁺ than a previously reported dipole-only configuration [3], while maintaining excellent agreement between simulations and experimental S-matrix measurements. Localized discrepancies in peripheral B₁⁺ are attributed to temperature-dependent variations in DR properties and warrant further systematic characterization. Next steps include specific absorption rate (SAR) evaluation using a human voxel model, extended three-row simulations, and in vivo calf imaging following ethical approval.

This work presents the first 18-channel receive-only TP coil array with integrated DRs for lower-extremity 7T MRI. The resulting wearable, size-adjustable architecture supports straightforward in vivo translation.
Ariane LEIBA , Martin DENERVAUD , Dimitrios C. KARAMPINOS , Daniel WENZ (Lausanne, Switzerland)
11:15 - 12:00 #54592 - P300 RF Transmitter Designs for a Form-Fitting Deuterium Breast Coil at 3 T.
P300 RF Transmitter Designs for a Form-Fitting Deuterium Breast Coil at 3 T.

FDG-PET is an established clinical tool for tumor staging, prognosis, and treatment monitoring. Deuterium metabolic imaging can provide similar metabolic information without exposing patients to ionizing radiation [1], which is especially advantageous in cases requiring repeated imaging, such as monitoring patients at high risk of developing breast cancer. The inherently low SNR of deuterium MRI, particularly at the clinical field strength of 3 T, creates a need for optimized RF hardware capable of receiving the small signal arising from deuterium-labeled substrates. In this work, we present the mechanical layout of a form-fitting ²H breast coil and compare three different transmitter configurations for the design. In the future, the setup will be expanded with a multichannel ²H receive array to maximize sensitivity.

The mechanical setup for the ²H breast coil was modeled in Autodesk Inventor Professional 2026 (Autodesk, San Francisco, California, USA), see Figure 1a–b. It is intended for prone positioning and features rounded cups, similar to previous form-fitted designs such as [2], [3], to enable close element placement for a future ²H receive array. Three different transmitter options were developed based on these geometric constraints and added to the model, see Figure 1c–d. Option 1 consists of a large single loop (shown in green) with maximum coverage of lymph nodes in the axillary and clavicular regions. Option 2 is a smaller, oval-shaped single loop (shown in orange). Option 3 comprises one transmit loop for each breast (shown in red). All three configurations feature a 4 mm conductor diameter and a 15 mm distance to the patient. The coil structures were imported into CST Studio Suite (Dassault Systèmes, Vélizy-Villacoublay, France) to perform electromagnetic simulations. The coils were loaded with the "Ana" voxel model from the CST Bio Models Library Extension. For each of the three transmit setups, B₁⁺ and SAR distributions were simulated for 1 W input power using the time-domain solver with circuit co-simulation. The mean and standard deviation (SD) of B₁⁺ were calculated for voxel data included in the ROI shown in Figure 2. The relative transmit field inhomogeneity was calculated as SD(B₁⁺)/mean(B₁⁺). The coil conductors were modeled as perfect electric conductors and segmented by four tuning capacitors for the two single-loop setups, and two capacitors per loop for the array, to tune the coils to 19.61 MHz. Each loop includes a pi-matching network at the feed port to match to 50 Ω. The array elements in option 3 were decoupled via flux cancellation using transformer decoupling [4], which was simulated as two coupled inductors in series with the coil conductor. The array elements were driven with 90° phase shift and 1 W input power in total. To account for component and solder-joint losses, a 0.1 Ω series resistance was simulated for each capacitor, and a 0.5 Ω resistance was used for the decoupling inductors.

The coils were tuned and matched to a reflection coefficient of -20 dB or lower. The two-element loop array was decoupled to -32 dB transmission using 29 nH inductors with a coupling factor of 0.8. The simulated B₁⁺ fields for the three transmitter options are shown in Figure 3. For the ROI outlined in Figure 2 and 1 W of simulated input power, the three setups generated mean (SD) B₁⁺ values of 3.1 (0.63) µT, 3.0 (0.42) µT, and 4.5 (1.4) µT, respectively, corresponding to field inhomogeneities of 20%, 14%, and 32%. The peak 10 g SAR values were 0.13 W/kg, 0.14 W/kg, and 0.19 W/kg, respectively.

All three setups provide good transmit coverage throughout the breast. Visually, both options 1 and 2 provide good coverage of the axillary and supraclavicular lymph node regions, which serve as important indicators in breast cancer staging [5]. The higher field inhomogeneity observed for option 1 is likely caused by the proximity of the inferior conductor to the breast. This also compensates for the larger element size, resulting in a similar mean B₁⁺ within the evaluated ROI for options 1 and 2. The two-element loop array (option 3) generates the highest B₁⁺ amplitude per unit input power, but also the highest inhomogeneity among the three setups, which is consistent with the smaller individual loop size. Due to the low operating frequency, SAR was comparatively low for all three setups.

If sufficient power is available from the X-nucleus amplifier, the single oval transmit loop (option 2) should be selected for the design, as it offers the best field homogeneity and coverage, as well as easier practical implementation than the two-element transmit array (option 3). Overall, the results suggest that at the low Larmor frequency of ²H at 3 T, a volume transmitter is not required. To enable concurrent use of the ¹H body coil for image localization, one or two tuning capacitors should be replaced by LCC traps [6] for proton decoupling when implementing the coil in practice.
Veronika CAP (Copenhagen, Denmark) , Jan Henrik ARDENKJÆR-LARSEN , Vitaliy ZHURBENKO
11:15 - 12:00 #54541 - P301 Voltage-based B1 measurement of MRI surface coils.
P301 Voltage-based B1 measurement of MRI surface coils.

RF coils in MRI must produce a homogeneous alternating magnetic field over a wide field of view, requiring an application-specific design. Current methods rely on numerical Maxwell solvers for field estimation [1-2]. After fabrication, performance is assessed via quality factors, sensitivity, and homogeneity, with iterative tuning if needed, though final validation remains an in-situ MRI experiment. The magnetic field intensity per unit input power is given by [3]: where Vmax is the maximum induced voltage, f is the resonant frequency, r (7.5.mm) is the radius of the pick-up coil, and PmW is the input power in milliwatts. Vmax can be measured using a pick-up probe, as shown in Fig. 2.b). This study evaluates B1 as a function of distance from a 300 MHz circular MRI coil along its central axis.

To experimentally measure B1, a device was designed integrating an AD8307-based module with an ADS1115 16-bit ADC and a Teensy 4.0 board. The module was powered by 7.7 V from an LM317 regulator connected to a 9 V battery. The ADS1115 and OLED were powered at 3.3 V from the Teensy's 5 V output. The Teensy was powered via USB. The system was calibrated at 300 MHz using a Rohde & Schwarz SMB100B generator via a 50 Ω coaxial cable. A Python GUI enabled real-time visualization and data logging. Fig. 1 shows a block diagram of the system built to conduct the experimental measurement. Fig. 2.a) A 300 MHz circular antenna was evaluated, see Fig. 1.a). Resonance was measured via S11 using a ZNB VNA. A 1.5 cm pick-up probe was moved along the central axis from 5 mm to 8, 11, 14, and 24 mm, see Fig. 2.b). The coil was driven at 0 dBm. Radiated power was converted to probe voltage.

B1 measurements were acquired using the setup illustrated in Fig. 2(b). A plot of B1 as a function of distance was obtained and is shown in Fig. 3. These experimental results were validated against the theoretical expression for a circular coil derived by Schnell, etal. [4-5]. The comparison between theory and experiment is presented in Fig. 3.

Magnetic field sensitivity decreases with increasing distance from the antenna plane. Maximum sensitivity occurs at 5 mm (the closest measured point), while at 24 mm, sensitivity falls to near-zero minimum levels a theoretically expected behavior. The correspondence between theory and experiment is remarkable, as shown in Fig. 3. This also confirms that the RF coil was properly tuned to resonance and impedance-matched, demonstrating that optimal selection of its electrical properties is essential for maximizing efficiency and avoiding signal losses. The sharp decline in sensitivity over a relatively short distance underscores the near-field nature of the coil's operation and has direct implications for practical applications: it defines a strict working volume within which reliable signal detection is possible. Consequently, any sample or device interacting with the coil must be positioned with sub-millimeter precision to ensure consistent coupling. Furthermore, this spatial constraint highlights a fundamental trade-off in coil design between penetration depth and localized sensitivity, suggesting that future iterations could explore alternative geometries such as multi-turn configurations to extend the sensitive range without sacrificing the resonance performance achieved here.

The sensitivity of a 300 MHz circular MRI coil was evaluated along its central axis. Sensitivity decreases with distance from the antenna, peaking at 5 mm and nearing zero at 24 mm, consistent with theory. Excellent agreement with Schnell's expression (Fig. 3) validates the AD8307-based apparatus and calibration, and confirms proper tuning and 50 Ω matching. Thus, careful selection of electrical properties is essential for maximizing efficiency and avoiding losses in MRI applications. Acknowledgments. This work was supported by PAPIIT-UNAM grant IN15825. A graduate scholarship from UNAM is also gratefully acknowledged. SRL thanks SECIHTI Mexico for graduate scholarship and grant number: CBF-2025-I-13.
Saul RIVERA DE LA LUZ , Osvaldo CADERON , Jehu LOPEZ-APARICIO , Alfredo O RODRIGUEZ (Mexico City, Mexico) , Sergio SOLIS-NAJERA
11:15 - 12:00 #54539 - P302 Simulation based optimization of transmit efficiency in the visual cortex for various 9.4 T coils.
P302 Simulation based optimization of transmit efficiency in the visual cortex for various 9.4 T coils.

An efficient and symmetric excitation is desirable for structural and functional MRI at UHF (B0≥7T) [1]. However, when developing coils, the B1+ field distribution can only be measured once the coil is built, which makes adjustments and improvements difficult. Although parallel transmit pulses can help to mitigate inhomogeneities, they require additional optimization and need to be implemented in the sequences intended to use [2]. In addition, they are usually not used during system adjustments and parallel imaging reference scans, which can result in additional artifacts. Transmit field RF shimming [3] by optimizing the magnitude and phase of the individual transmit channels can provide an alternative. We investigated the transmit field distribution, efficiency and SAR in case of B1+ shimming of a new 8-channel transmit coil with coaxial-end dipoles dedicated for MRI of cortical brain areas involved in visual processing (VC coil). For comparison, additional simulations were performed using two more sophisticated existing coil designs for whole brain imaging.

Three different coils designed to operate at 9.4T were compared numerically. The VC coil was investigated separately with and without a radiation shield used to increase B1+ in the top of the head. Additionally, two 16-channel coils, one developed for high-resolution anatomical imaging for use with B0-field probes (FP coil) [4] and a transceiver 16-channel coil (16TxRx) [5] designed for spectroscopy tasks. Simulation models of the coils are depicted in Fig. 1. Channel-wise B1+ maps and specific absorption rate (SAR) calculations were derived using FIT method realized in CST Studio 2024 based on the Duke model from the Virtual Family [6]. SAR was calculated using 10 g tissue averaging and CST legacy method. In order to determine the target volume for the optimization, the TPM atlas of SPM 12 was manually aligned with the body model using rigid body transforms. The volumes of interest in the two hemispheres and their location in the simulated human body model are visualized in Fig. 2. Magnitude and phase B1+ shims were then optimized in Python (version 3.14.3) using the L-BFGS algorithm from the PyTorch library (version: 2.11.0) for all cortical areas involved in visual processing. The goal of the optimization was to minimize either the coefficient of variation (CoV) divided by the mean or the mean of the lowest 10% of voxel efficiencies. In addition, the obtained B1+ shims were compared with CP and CP2 modes for all coils.

The distributions of the B1+ efficiencies for the different modes are plotted in Fig. 3. In the target volume the CP2 mode performs with higher efficiency compared to the CP mode. Applying a B1+ shim optimized for CoV/mean promises to increase the homogeneity and improve left-right symmetry, while keeping the efficiency at least comparable to the CP2 mode. Optimizing the lowest 10% of voxels yields a higher mean efficiency but increases variation across the volume. Additional objective functions were used for optimization, such as CoV alone, but they showed no significant improvement in mean efficiency or homogeneity. Adding the shield to the VC coil introduces an asymmetry in the CP mode between the left and right hemisphere of the target volume, but this can be counteracted by using the CP2 mode or the optimized shim. For the 16TxRx coil, both B1+ shims show a significant improvement in the mean efficiency compared to the CP mode, promising to boost the performance of the coil. Exemplary B1+ maps for one of the coils are shown in Fig.4. The SAR of the VC coil designs is comparable to the SAR of the existing coils. However, adding a shield to the VC coil increases the SAR significantly. Boosting the mean efficiency by optimizing the lowest 10% leads generally to higher SAR, while for the CoV/mean optimization no clear trend is observed.

The results suggested that the VC coil can perform comparable to the existing 16 channel coils while having only 8 transmit channels. When SAR is considered adding a radiation shield to the VC coil is detrimental. However, since SAR was not considered during the optimization, shims with a better SAR efficiency may be possible. Furthermore, these results are based solely on simulated B1+ maps and were not validated with measured data, so different behavior is possible in an experimental setting and significantly different head shapes compared to the simulated model.

Overall, the results suggest a good performance of the new coil in the visual processing cortices despite its lower number of transmit channels and simplified design, compared to the existing coils. The presented transmit field simulations provided insights into the potential coil performance during development stage, allowing for possible adjustments of coil design. Future plans involve the optimization under SAR constraints and validating the simulation results with measurements on the MR-scanner.
Felix GABEL (Tübingen, Germany) , Georgiy SOLOMAKHA , Klaus SCHEFFLER , Jonas BAUSE
11:15 - 12:00 #54456 - P303 Supplemented Dielectric Waveguide for Head and Neck Traveling-wave MRI at 7T.
P303 Supplemented Dielectric Waveguide for Head and Neck Traveling-wave MRI at 7T.

The traveling-wave (TW) magnetic resonance imaging (MRI) method was introduced to simplify radiofrequency (RF) coil setup and reduce number of cables required in ultra-high-field (UHF) MRI [1], which holds great potential for brain studies [2]. TW MRI requires additional passive structures for brain imaging [3], [4], [5] to improve transmit (Tx) efficiency and homogeneity of TW MRI excitation [6]. The dielectric waveguide (DW) [5] is easy to integrate and can enhance the propagating wave within the bore, increasing Tx-efficiency without increasing local specific absorption rate (SAR) substantially. However, the conventional DW configuration was mainly tailored for brain imaging, with limited optimization for extended head–neck coverage. Inspired by both the double-structure dielectric concept [7] and an RF array design covering the brain and spinal cord in the cervical spine [8], we propose a supplemented dielectric waveguide (SDW). The SDW is obtained by optimizing the state-of-the-art DW [5] and adding a dielectric insert near the neck.

The numerical model of the SDW surrounding the head of a voxel model is shown in Figure 1A. The full SDW model comprised a dielectric cylinder (relative permittivity ε = 21, wall thickness 29 mm, inner diameter 250 mm) and an additional dielectric insert (a cylinder segment with a length of 80 mm) [5]. The complete numerical model also included a circularly polarized (CP) patch antenna to provide TW excitation through the MRI bore-waveguide. Front and side views of the SDW were shown in Figure 1B, C. The SDW design was optimized through separate length optimization of the dielectric cylinder and the dielectric insert, aiming to improve both B1+ homogeneity and Tx-efficiency. B1+ field characteristics were evaluated across three transverse slabs: a 160 mm (170 mm) slab covering the entire brain, a 100 mm (110 mm) slab covering the cervical spinal cord, and a 260 mm (280 mm) slab covering both regions, using both Ella and Duke voxel models [9]. SAR-efficiency was defined as the ratio of the mean B1+ to the SAR level (pSAR10g), calculated with the CST Legacy averaging method over 10 g of tissue. For comparison, the conventional DW (without the dielectric insert) [5] was also simulated under the same TW setup.

Figures 2 and 3 present B1+ distributions in the central sagittal plane of the Ella and Duke models obtained with different configurations. The figures also show parametric results for the proposed SDW and the state-of-the-art DW, including B1+ homogeneity, Tx-efficiency, pSAR10g and SAR-efficiency, calculated for various lengths, all normalized to 1 W accepted power.

As seen in the tables within Figures 2 and 3, the SDW with a total length of 450 mm provides the compromise between B1+ COV, Tx-efficiency, pSAR10g, and SAR-efficiency. It substantially improves B1+ homogeneity while maintaining Tx-efficiency in the head and the whole head-neck region, and enhances Tx-efficiency in the neck by 103.6% and 66.5% for the Ella and Duke voxel models, respectively, also increasing SAR-efficiency, compared to the previously proposed DW [5]. Importantly, for the Ella voxel model, the SDW achieves better B1+ homogeneity by 22.4%, 40.7%, 26.4% and SAR-efficiency by 14.2%, 131.8%, 15.7% in the head, neck, and both regions, respectively, compared to the conventional DW. Similar improvements are observed for the Duke voxel model while also offering an increased field of view in the longitudinal direction. In the future, we will optimize the diameter to improve patient comfort and replace the dielectric structure with a lightweight, thin metasurface that would provide increased coverage. Note that we did not use a uniformly longer dielectric cylinder because we aimed to focus the field specifically in the neck and avoid RF field in the mouth region, which can cause image artifacts.

We numerically investigated a SDW with an additional dielectric insert for simultaneous head and neck TW MRI at 7 T. We have found optimal parameters for a structure that covers both the head and neck, achieving improved RF field homogeneity. The proposed SDW can be used in 7 T MRI applications where an extended region of interest, high Tx-efficiency, and improved homogeneity are required simultaneously.
Kristina POPOVA (St. Petersburg, Russia) , Yang GAO , Georgiy SOLOMAKHA
11:15 - 12:00 #53373 - P304 Mitigating RF power mismatch in MRI using a metasurface.
P304 Mitigating RF power mismatch in MRI using a metasurface.

The performance of the entire MRI system hinges on the stability of its RF power amplifiers, which is directly compromised by impedance mismatch [1]. Mitigating this requires an integrated strategy encompassing real-time impedance matching, robust amplifier design, and careful system engineering. As the field advances toward ultra-high-field platforms like 7T and beyond, developing RFPAs (RF Power Amplifier) that can maintain this delicate balance of power and precision is a paramount research objective [2]. Complementing these core electronic solutions are novel materials-based approaches. In our investigation, we explored the utility of a metasurface to improve the image quality degraded by RF power mismatch. By strategically manipulating the electromagnetic field, the metasurface served to effectively counteract the deleterious effects of the mismatch, demonstrating significant potential as a passive method to enhance signal integrity and restore diagnostic image quality in challenging scanning scenarios.

The metasurface was formed by an array of 4 x 6 Split Ring Resonator (SRR) elements and constructed using flexible hydrocarbon ceramic laminates (RO4003C3: ???? = 3.55 and tan(????) = 0.0027, thickness = 0.508 mm, 98 mm long and 57 mm wide) [3]. The SRR had a 13 mm diameter and a gap of 2 mm and a 1 mm strip width and were printed on this flexible material above, see Fig. 1.b). A commercial quadrature birdcage coil operated in transceiver mode was used in all imaging experiments (RF RES 300 1H 075/040 QSN TR, model no.: 1PT13161V3, serial no.: S0121, REV/VEC: 2P01.05, Bruker BioSpin MRI, GmbH, Germany). The acquisition parameters were: TE/TR = 4.39 ms/200 ms, FOV = 60 mm x 60 mm, matrix size = 256 x 256, Flip angle = 450, slice thickness= 1 mm, NEX = 4. Additionally, phantom images without the metamaterial and a in-house birdcage coil were also acquired for comparison purposes. All MRI experiments were performed on a 7T/30cm Bruker imager (Bruker, BioSpin MRI, GmbH, Germany). The phantom consisted of a Falcon tube (50 mL, 30 mm diameter, 115 mm length) filled ddH2O, with the flexible metasurface wrapped around it.

The profound impact of the metasurface on image quality is immediately apparent in Fig. 2.a)-b). Visually, the image acquired with the metasurface exhibits superior uniformity and clarity. This qualitative assessment is strongly supported by quantitative analysis, which measured a 26.32% increase in the signal-to-noise ratio (SNR) from 64.69 without the metasurface to 87.81 with it, as detailed in Fig. 1.b).

Such a substantial gain in SNR is a critical metric in MRI, as it directly influences the ability to resolve fine anatomical detail and detect subtle pathological changes. The fact that this level of improvement was achieved with a metasurface lacking passive components is a compelling finding, suggesting a highly efficient and cost-effective strategy for enhancing preclinical imaging systems. The metasurface also contributed to a 2.1× reduction in background intensity variation, confirming its role in suppressing optical crosstalk and stray light. Together, these results demonstrate that the metasurface not only boosts signal fidelity but also enables a more faithful reconstruction of fine structural details critical for high-precision imaging applications.

The integration of the flexible metasurface demonstrably provides a major boost in image quality and clarity. This technology offers a simple, efficient, and powerful method for advancing preclinical MRI systems, as validated by both qualitative assessment and a significant quantitative improvement in SNR. The success of this passive metasurface design underscores the potential of metamaterials as a transformative tool for achieving superior B1 field homogeneity and signal sensitivity. Future work will focus on optimizing these structures for in- vivo studies and exploring their application across a wider range of field strengths. Acknowledgments. This project was funded by the UAM Division of Basic Science and Engineering as part of the Special Program for Education and Research (SA-DCBI-121-2024) and UNAM-DGAPA-PE103924 and SECIHTI Mexico (grant number: CBF-2025-I-13).
Sergio SOLIS-NAJERA , Jelena LAZOVIC , Saul RIVERA DE LA LUZ , Alfredo O RODRIGUEZ (Mexico City, Mexico)
11:15 - 12:00 #54698 - P305 Electric field mapping for evaluating RF coil noise susceptibility.
P305 Electric field mapping for evaluating RF coil noise susceptibility.

The solenoid is one of the most widely used radiofrequency (RF) coils in Low-Field MRI systems with transverse static magnetic field due to its high sensitivity. Inevitably, it produces RF electric fields within the coil. These electric fields are contributing to environmentally induced noise through capacitive coupling pathways [1]. To mitigate this effect, RF coil segmentation is commonly used to redistribute and reduce the electric field within the coil [2]. More recently, passive RF structures such as the flexible endoshield were introduced to break the capacitive coupling path [1]. These passive approaches are particularly promising since they can potentially provide reliable noise reduction without active compensation methods. When evaluating such electric-field reduction techniques, quantitative characterization remains essential. Current approaches often rely on signal-to-noise ratios extracted from reconstructed images, which may be less representative of the electromagnetic MR signal measured directly in volts within the receive chain [3]. In this work, we propose to characterize the effectiveness of electric-field reduction techniques from direct electric field measurements. At low frequencies (typically a few MHz), conductive electric-field probes can perturb the electric field distribution during the measurement. Our approach is based on a non-metallic opto-electric probe to measure the electric field produced by the RF coil. The proposed framework is evaluated using a comparison between an unsegmented and segmented solenoid coil.

Electric-field measurements were performed on a 15 cm diameter solenoid designed for a 50 mT MRI scanner. The solenoid consisted of 45 regularly spaced turns and was first evaluated in an unsegmented configuration, then in a segmented configuration using three 100 pF capacitors distributed along the antenna structure. Measurements were performed on-bench using an opto-electric probe (Kapteos SAS, France) positioned within the coil. The experimental setup consisted of a continuous wave signal generator connected to the solenoid coil, while the probe output was transmitted through an opto-electronic converter and visualized using a spectrum analyzer configured with a resolution and video bandwidth of 100 Hz. Spatial electric-field mapping was performed by mechanically scanning the probe in the central vertical line within the RF coil and recording the Ez field amplitude (since it is the dominant polarization). The carrier frequency of the continuous wave generated in the coil was set to the resonant frequency of the coil when it is matched to -20 dB for each of the segmented and unsegmented cases (Figure 1). Noise measurements were performed in the MRI using FID sequence without RF excitation. In this configuration, the receive frequency was set to the resonant frequency of the antenna in the MRI. We recorded measurements over 100 kHz bandwidth using 4 averages, enabling comparison of the environmental noise received by the segmented and unsegmented RF coils. For each case, we evaluated the coil when it is unloaded, and when it is loaded with a grounded arm (using a grounding belt made of conductive cloth).

Segmentation of the solenoid produced a clear reduction in measured electric-field amplitudes along the mapped z-line, decreasing the maximum Ez component with a factor of 2.93 while yielding a more homogeneous field distribution (Figure 2). As for the noise measurements in the MRI, we define the average of the frequency spectrum amplitudes as a noise metric for case comparison. However, this is only for indicative purposes as it does not consider the difference between broadband noise and the narrow spectral peak artifacts usually attributed to electromagnetic interferences (EMI). The measurements show, for both the unloaded and loaded cases, a reduction in the average amplitude of the spectrum by a factor of 2.62 and 2.78 respectively. After segmentation, the resulting average amplitude was almost equal to the 50-ohm baseline whereas the loaded case was 1.9 times higher (Figure 3).

The presented results demonstrate a good correlation between reduced electric-field amplitudes and reduced environmental noise in MRI RF coil. Ongoing work consists of generating 3D spatial electric-field maps for all polarizations to evaluate electric-field reduction techniques more accurately and to establish a stable quantitative framework for RF noise characterization.

Beyond segmentation, this approach could support the comparative evaluation of different RF geometries and low-noise design strategies. In a broader sense, it allows to quantify the role of local electric field distributions in environmental noise sensitivity and could also be used to define optimal segmentation configurations for a given RF coil.
Jana EL ZAHER (Marseille) , Amira BERGÉ-LAVAL , Marc DUBOIS , Redha ABDEDDAIM , Frank KOBER
11:15 - 12:00 #54320 - P306 Interactions between electrically conductive structures of simple geometry and the radio frequency field in MRI.
P306 Interactions between electrically conductive structures of simple geometry and the radio frequency field in MRI.

During the MRI scan, the interaction between the electrically conductive implant and the rapidly changing field of MRI may cause heating, stimulation or image distortion. That is why MRI scans of people with implants are difficult or impossible. The aim of this work is to develop and test methods for predicting interactions between the radio frequency (RF-)field and electrically conductive structures of simple geometry. This enables the development of implants that retain their function whilst avoiding any undesirable interactions.

The study examines rings in closed and open forms. Two ring sizes (radius of the ring) rR=13.47 and 18.47mm and wire thickness rD=1.78mm are being examined. In addition, two rings with rR=14.30 and 18.47mm, rD=0.69mm and with additional capacitor plates (A=10mm^2) are being investigated. In open rings, the gap between the wires varies between 0.1-2.0mm. The rings are measured in a nickel sulphate solution and examined using a GRE-sequence in a 3T-MRI. Closed rings cause a cancellation of the magnetic field because of the interaction with the RF-field (Faraday’s law of induction). Rings with a specific gap exhibit a resonance with the Larmor frequency. These rings form a LC resonant circuit to the Larmor frequency [1].

The ring series 1 with rR=13.47mm shows the highest signal intensity for gap 0.1mm (Fig.1, above). The ring series 2 with rR=18.47mm (Fig.1, below) shows additional resonances that could not be fully reproduced in the experiments M1-M3. The resonances are sensitive to even slight changes and appear to be of high quality. The ring series 3 (Fig.2, above) with rR=14.30mm, A=10mm^2 and a gap of 0.2mm (and gaps up to 0.5mm) shows increased intensity. For larger gaps, the intensity is lower again. The ring series 4 with rR=18.47mm and A=10mm^2 shows increased signal intensity around the wire for gaps ≥0.1mm (Fig.2, below). The larger the gap, the larger the area of increased intensity. The resonance is illustrated by a change in the intensity profile (Fig.3 & 4). This change occurs for a gap of 0.1mm for the ring series 1 (calculated gap 0.18mm). For gaps >0.1mm, the ring displays increased intensity inside the ring. The ring series 2 shows the change in the intensity curve for the gap 0.3mm (calculated gap 0.25mm). Further resonances are shown for gaps >0.3mm. The ring series 3 shows the change for the gap 0.2mm (calculated gap 0.25mm). The highest Intensity has the ring with gap 0.5mm. The ring series 4 shows the change for the gap 0.5mm (calculated gap 0.35mm). The highest intensity shows the ring with gap 2.0mm.

A gap in the ring can prevent the significant reduction in RF-amplitude within the closed ring. Small gaps between the wires result in an increase in the intensity of the RF-field and the measured intensity signal. The intensity profile varies with the size of the gap for the rings 1&3, and the result is largely consistent to the calculation given by Ruoff et al. [1]. The rings 2&4 exhibit additional resonances at lager gaps, which cannot be explained by a resonant circuit to the Lamor frequency. This deviation could be explained by the superposition of several effects. Due to their circumference of λ/2, the rings could show a resonance with the electrical field, just as rods of this length. It is supported by the high asymmetric signal intensity for large gaps. This interaction is sensitive to changes in the ring’s position and the location of the gap.

The study shows that the reduction in amplitude within a closed ring is compensated by introducing a gap. The calculation of resonance according to [1] doesn’t consider all possible interactions between the wire and the RF-field. It is possible to incorporate larger capacitor areas into the gap, thereby enabling the use of interconnections in implants. Inserting a gap into a ring-sharped implant does not always prevent RF-field coupling into the implant.
Ines DIETERLE (Albstadt, Germany) , Günter STEIDLE , Petros MARTIROSIAN , Fritz SCHICK
11:15 - 12:00 #54137 - P307 A wireless NMR field probe.
P307 A wireless NMR field probe.

NMR field probes are established tools for gradient field monitoring in MRI, but wired implementations may in principle introduce electromagnetic interference, RF heating hazards, and spatial constraints. Certain applications, such as field NMR probe-based motion tracking[1], directly suffer from the cabled probes and the confounding straining forces exerted by the cables. A fully wireless field probe system would address these limitations while enabling new applications such as subject-mounted motion tracking. This work presents the first complete wireless NMR field probing demonstrator which features a custom RF front-end ASIC and UWB communications.

The demonstrator integrates a custom 65 nm CMOS transceiver ASIC[2] providing low-IF quadrature demodulation, T/R switching, RF power amplification in transmit mode and low-noise amplification in receive mode, consuming an average power of 14.1 mW in receive mode. A resonant network shared between transmit and receive chains enables passive voltage amplification to >100 V peak-to-peak on transmit, while providing receive-side signal amplification ahead of the LNA. The active NMR substance used in the experiments is hexafluorobenzene (19F, 120.159 MHz at 3T) doped with a relaxation agent to bring down the T1 relaxation times below 10ms. The demonstrator features on-board frequency synthesis, digitization at 5 MSample/s, and an STM32 MCU supporting three data processing modes — 1) raw I/Q transmission 2) phase extraction with decimation and 3) linear phase slope fitting mode. Ultra-wideband (UWB) wireless communication (Spark Micro SR1010) supports up to 963 kbps per node across four parallel nodes. The system is battery-powered with ~1 W total consumption. The demonstrator PCB is depicted in Fig. 1. To demonstrate the system functionality, FID signals were acquired inside an idle 3T scanner and the raw data was transmitted wirelessly to a gateway outside the bore, Fig. 2. As an example of an on-body application, a time series measuring the pseudo-static fields induced by breathing motion was recorded by placing the sensor on a volunteer's chest while inside the scanner: linear fits to the phase accrual of each measurement snippet were performed on-board and transmitted to the gateway at a rate of approximately 50 Hz.

FIDs and phase curves are plotted in Fig. 3. System sensitivity, defined as SNR*√BW was measured at ~53,000 √Hz. In the breathing motion experiments, field fluctuations were successfully resolved, demonstrating physiological field monitoring capability. The data from this measurement is shown in Fig. 4 and has been low-pass filtered at 2 Hz. A drifting trend of ~30 Hz over 50 s can be observed, which most likely can be attributed to drifts of the on-board crystal oscillator.

The demonstrator successfully validates all the subsystems necessary for wireless field probing. The achieved sensitivity of ~53,000 √Hz is comparable to what can be achieved with equivalent wired probes (~86000, considering equivalent sample sizes and sample nuclei). Any loss in performance could likely be attributed to a noisier on-board frequency reference, or interference from nearby on-board components. The clock drift observed in the breathing motion measurements highlights the need for a more stable clock reference, which could be provided by a separate over-the-air frequency reference broadcast transmit/receive system: this was also developed as an ASIC within this project[3], but was not taken to a sufficient level of completion to be integrated on the demonstrator. Some errors in the phase calculations have been established to originate from the on-board computations of trigonometric functions: this is currently under investigation.

This work constitutes, to the authors' knowledge, the first demonstration of a complete wireless NMR magnetometer for in-bore field monitoring. The compact form factor would make it well suited for field camera probe arrays or for on-body applications. To improve the system power efficiency and footprint, further ASIC integration of the system components could be considered, including integration of wireless clocking.
Oskar BJÖRKQVIST (Zürich, Switzerland) , Silvano CORTESI , Guillaume MOCQUARD , Christian VOGT , Thomas BURGER , Klaas P. PRUESSMANN
11:15 - 12:00 #54121 - P308 NMR field probes: 3D printed sample containers for durable encapsulation.
P308 NMR field probes: 3D printed sample containers for durable encapsulation.

NMR field probes are well-established tools for high-precision magnetic field measurements in MRI, with applications in for example image reconstruction or hardware tests. Fabricating high-quality probes however remains technically challenging. State-of-the-art probes rely on liquid samples sealed within glass capillaries that are complex to hermetically seal in a way that contains the sample over time[1]. These constraints limit the accessibility of field probes. In this work, we present a fabrication approach for 1H and 19F samples based on stereolithography (SLA) 3D printing, that enables long-term encapsulation of NMR samples for field probing.

The sample container is in this work 3D printed using a UV-hardened resin[2] which enables great flexibility in shaping the container: This type of approach has the advantage of making the excitation selectivity more precise, and also of using only materials that directly can be doped for improved susceptibility matching. These appealing features however still require that the sample is retained in the container, which is why we in this work specifically investigated how the samples endured over long periods of time. SLA printing was used to fabricate spherical 1.3mm diameter sample containers using an Anycubic M7 Max printer and Anycubic's standard resin, Fig. 1 (1). Containers were fitted with 5-turn copper coils, then filled by submerging them in the target NMR liquid and cycling ambient pressure to displace residual gas. Filled containers were subsequently submerged in UV resin, lifted above the surface, and cured under UV light to form a hermetic seal. The sealed assemblies were finally cast into spherical epoxy resin bodies to provide mechanical protection and improved bulk susceptibility matching. Three sample types were evaluated: water, cyclohexane doped with gadolinium acetylacetonate, and hexafluorobenzene (HFB). After fitting the probes with tuning and matching circuitry, FIDs were acquired at a static 3T field using conventional field camera hardware. A circuit schematic and a photo of the probe with the circuitry can be found in Fig. 2.

The encapsulation of water samples quickly proved insufficient for retaining the water over time: After only ~1 month, the sample had lost about 25 % of its original FID signal strength, Fig. 3, and was visibly dehydrating. The HFB and cyclohexane probes, in contrast, demonstrated long-term stability. FIDs captured over time are illustrated in Fig. 4. The HFB probe maintained a consistent relaxation time and no obvious reduction in signal amplitude over roughly one year of monitoring. The cyclohexane probe similarly showed no clear degradation in signal magnitude or relaxation time over 280 days. Since T₂* in these probes is dominated by susceptibility-induced dephasing, its stability over time is indirect evidence that no new field-distorting features such as gas bubbles, or chemical degradation at the resin interface, developed during the observation period. Phase fit residuals also remained small throughout for both probes, confirming that frequency specificity was stable over time.

The results suggest that this method is inadequate for retaining water samples over time, while samples composed of cyclohexane or HFB, on the other hand, appear to be well suited for this encapsulation strategy. At the molecular level, both cyclohexane and HFB have larger molecular sizes and are also apolar: these may be the determining factors given that the H2O molecule is significantly smaller and highly polar. In the two successful demonstration cases, any variability between measurement sessions can likely be attributed to small differences in probe placement and orientation rather than any actual sample deterioration.

UV-resin-based additively manufactured containers could provide a viable, low-cost and scalable alternative to glass capillary encapsulation for NMR field probe fabrication. Encapsulations of HFB and cyclohexane samples demonstrated stable signal characteristics over periods exceeding nine months. This confirms the feasibility of encapsulating these particular compounds, which in turn potentially could extend to other compounds.
Oskar BJÖRKQVIST (Zürich, Switzerland) , Klaas P. PRUESSMANN
11:15 - 12:00 #54110 - P309 MR-invisible materials: optimisation of magnetically filled polymers.
P309 MR-invisible materials: optimisation of magnetically filled polymers.

In MRI, signals coming from parts of the scanner, especially RF coil housings, can lead to image artefacts [1-5]. This is a particular issue when imaging tissues with very short T2 or T2* (e.g. bone, lung, or myelin) using sequences with ultra-short or zero TE [5]. Common approaches to address such effects are dedicated sequence modifications [6,7,3,8,5,9] or the use of 1H-free materials [2,10-14], yet at the price of compromised performance or design restrictions. Therefore, in a more recent approach such unwanted signals are spoiled by means of added magnetic particles [15]. This concept was implemented by filling polymers with magnetite powder for producing filaments for additive manufacturing of RF coil formers. In this way, background-free short-T2 imaging was enabled. However, as undesired side effects, the B0 homogeneity in the imaging volume was reduced and forces on the formers occurred. The aim of the present work was to reduce these side effects by minimising the magnetite content in such filled materials while still sufficiently suppressing the unwanted signal.

As a theoretical basis for initial design decisions, the relationship between material parameters (chemical composition of the base material, magnetite content, and 3D printing infill) and the properties relevant for MR (proton density (PD), T1, T2, steady-state signal in short-T2 imaging, B0 distortions, and forces) was described. The MR properties of base materials were then determined experimentally, and the most suitable polymer was selected. Further, the effect of magnetite content on the MR properties was investigated experimentally. A number of filaments was produced with different base materials and magnetite concentrations, using a desktop filament extruder (MK3, ARTME 3D, Germany). From these, test samples (disks of 25 mm diameter), RF coil formers (hollow cylinders of 100 mm diameter), and a dedicated hand support were 3D printed using different infill factors. MR experiments on phantoms and in vivo were conducted using a 3T Philips scanner equipped with a high-performance gradient [16], a custom RF chain [7], fast transmit-receive switches [17], as well as an RF loop and a birdcage coil [15]. Imaging parameters of the PETRA [18] sequence for Figures 2|3|4 were: bandwidth 400|1000|500 kHz, FOV 50|210|130 mm, isotropic resolution 0.78|1.0|0.54 mm, dead time 10 µs, TR 1 ms, hard pulse FA 3.6|3.6|2.6°, and scan time 0:52|1:24|12:07 m:s.

Figure 1: The MR properties of the different base materials show large differences, favouring PETG for further investigations. Figure 2: This is confirmed by the corresponding short-T2 images (A). The base signal level can be further reduced by choosing a lower printing infill (B). By adding magnetite, the signal approaches the noise level (C). Importantly, with PETG with infill factor 0.2, a comparable residual signal is obtained as for the PLA of Ref. [15], yet at considerably lower magnetite concentration (for values see Figure 4B). Figure 3: Short-T2 imaging with the birdcage and inner formers made from different materials show reduced base signal for PETG-0.2 as compared with PLA (A). Again, magnetite filling virtually eliminates the signal. However, the magnetite concentration (VM/V) for the PETG formers is considerably lower than for PLA. Accordingly, the B0 inhomogeneity for PETG is improved (B), and the forces are reduced (not shown). Figure 4: As an application example, a human hand was imaged using the birdcage with the former made from PETG-0.2-M1. In addition, a support insert that enables comfortable placement and stabilisation of a hand was designed and manufactured from the same material (A). The obtained short-T2 images are free of any background signal from both former and support. Further, no artefacts arising from motion or B0 inhomogeneity are observed.

With the newly designed magnetically filled materials comparable signal reduction was obtained as for the reference material, yet at approximately half the magnetite concentration. The two main means of reducing signal and in turn the amount of magnetite are the choices of base material and infill factor. The former is determined by PD, T1, and T2, which may be subject to further optimisation during polymer design. Both choices also have an impact on the mechanical properties of the manufactured part, which needs to be considered. The final choice of the magnetite filling fraction should accept the maximum tolerable residual signal level from the manufactured scanner part. In this way, both B0 inhomogeneity and forces can be maximally reduced.

The concept of spoiling unwanted signals by magnetically filling polymers, together with optimisation of the material parameters, offers a versatile tool for fabrication of all kinds of MR-invisible parts of MRI scanners. This development is predominantly important for short-T2 MRI, in particular at extremely rapid signal decays such as in direct macromolecular imaging of myelin [19] or collagen [20].
Markus WEIGER (Zurich, Switzerland) , Overweg JOHAN , Martina RETTORE , Lauro SINGENBERGER , Hanna DANGEL , Lara BARTELS , Jason VAN SCHOOR , Roger LUECHINGER , Klaas Paul PRUESSMANN
11:15 - 12:00 #54666 - P310 MANILA: development and quantitative validation of an anatomically informed thoracic MRI phantom.
P310 MANILA: development and quantitative validation of an anatomically informed thoracic MRI phantom.

MRI has become a cornerstone of modern medical imaging due to its excellent soft-tissue contrast, ability to provide both anatomical and functional information, and absence of ionizing radiation, enabling repeated longitudinal acquisitions and non-invasive tissue assessment [1]. Despite these advantages, thoracic MRI remains particularly challenging because of the low proton density of lung tissue, susceptibility effects at air-tissue interfaces, physiological motion, and lack of standardized acquisition protocols [2]. Although recent advances in acquisition strategies and pulse sequence development have substantially improved image quality in this context, protocol optimization and quantitative validation remain critical challenges [3]. In this setting, phantoms represent essential tools for controlled validation and reproducibility studies [4]. Currently available thoracic phantoms either provide anatomical realism without physiologically meaningful MRI relaxation properties or reproduce quantitative relaxation values without conveying anatomical organization [5, 6]. In this work, an anatomically informed thoracic phantom was designed and quantitatively characterized to reproduce physiologically plausible T1 and T2 values at 1.5 T.

The developed phantom incorporated tissue-mimicking compartments representing lungs, heart, spinal cord, vertebral body, tumour regions, and filling material using tuneable agarose–gadolinium formulations to modulate relaxation properties, while carrageenan and sodium azide were included for structural stabilization and preservation. Validation was performed at 1.5 T using NMR relaxometry (SRSE and CPMG), MRI mapping, and contrast-weighted imaging acquired on Siemens MAGNETOM Aera and Sola systems across multiple post-fabrication sessions. Inter-scanner comparison was evaluated on T1 measurements, as T2 mapping was not available on the MAGNETOM Sola system. The influence of acquisition parameters on image contrast was investigated using T1- and T2-weighted TSE sequences as a function of TR and TE, respectively. Analyses included Bland-Altman evaluation of NMR vs literature and NMR vs MRI agreement, together with ROI-based signal and Michelson contrast analyses referenced to the lower tumour for T1-weighted acquisitions and to the filling material for T2-weighted acquisitions.

NMR measurements demonstrated overall good agreement with literature-derived reference relaxation values, particularly for T1, which showed mean absolute deviations below 5%. MRI mapping confirmed reproducibility and temporal stability across repeated acquisitions and different MRI systems. T1 measurements exhibited systematic underestimation in MRI compared with NMR, particularly in the long-T1 regime, resulting in a mean bias of +209 ms, whereas T2 measurements showed stronger agreement, with a mean bias of -12 ms (Fig. 1). Contrast analyses demonstrated coherent relaxation-driven signal evolution across tissue compartments, reproducing physiologically plausible thoracic contrast behaviour (Fig. 2).

Agreement between NMR measurements and literature-derived relaxation values supports the validity of the proposed tissue-mimicking formulations. MRI-NMR agreement was stronger for T2 than for T1, reflecting the higher stability of SE-based mapping compared with IR-based approaches. The observed discrepancies mainly reflected intrinsic sequence- and reconstruction-dependent effects rather than inter-scanner variability. In fact, systematic differences in T1 values were primarily observed between MRI and NMR measurements, whereas the two MRI systems showed overall consistent trends. The main inter-scanner difference was observed in the filling material, which appeared noisy and heterogeneous in the MAGNETOM Aera acquisitions (Fig. 3a) but more stable in the MAGNETOM Sola measurements (Fig. 3b). This behaviour likely reflects differences in B1 handling, as the Aera implementation accounted for B1 effects through flip-angle fitting, whereas the Sola implementation included dedicated B1 correction. Finally, the coherent TR- and TE-dependent signal behaviour confirmed the ability of the phantom to reproduce physiologically plausible relaxation-weighting mechanisms across tissue compartments.

The proposed phantom (MANILA) provides a quantitatively characterized framework for MRI validation, sequence optimization, and protocol harmonization in thoracic imaging applications. Future work will focus on radiomic feature intra-scanner repeatability and inter-scanner reproducibility.
Agnese ROBUSTELLI TEST (Pavia, Italy) , Francesca BRERO , Manuel MARIANI , Paolo QUADRELLI , Lorenzo ALBERGHI , Chandra BORTOLOTTO , Lorenzo PREDA , Alessandro LASCIALFARI
11:15 - 12:00 #54643 - P311 Worst-Case Assesment of RF-Induced Heating in MRI Safety for Multi-Configuration Passive Medical Devices Partially Implanted in Bone Tissue.
P311 Worst-Case Assesment of RF-Induced Heating in MRI Safety for Multi-Configuration Passive Medical Devices Partially Implanted in Bone Tissue.

A comprehensive in vivo temperature evaluation is recommended for labelling RF-induced heating in an MR safety assessment. Underestimating RF-induced heating may pose a risk to patients, whereas overestimating it may limit the power allowed to excite the scanner in the case of an MR-conditional. Since the tissue properties may affect the in vivo temperature increase significantly, an analysis of tissue properties in a worst-case analysis is suggested instead of performing an in vitro methodology based on homogeneous tissue. When assessing multi-configuration passive implant medical devices, differences in tissue properties used in the analysis could result in different worst-case configuration [1]. The worst-case configuration is influenced by the electrical properties of the tissue surrounding the implant. However, for orthopedic implants that are partially mounted on bone tissue (partial-bone implants), such as spinal systems and bone plates, the worst-case configuration and hot spots may differ from those of fully immersed implants. The effect of bone material on the nail system orthopedic implant has been investigated in [2]. This paper will propose a framework for analyzing partial-bone orthopedic implants of multi-configuration passive medical devices and evaluate the differences to single-tissue analysis based on numerical analysis

The computations were performed by employing time domain solver of the simulation platform 3DS CST Studio Suite 2019 (Darmstadt, Germany). Two generic partial-bone implants modelled as Perfect Electric Conductor, shown in Fig.1, were simulated in gel simulation body tissue and in a bone construct material at the frequency of 128 MHz representing a 3T MR system. The scenarios of the tissue’s material surrounding the implant are given in Fig. 2. First, both implants are immersed in gel simulating muscle where the relative electrical permittivity and electrical conductivity refer to ASTM standard [3]. Secondly, those implants are immersed in the vertebrae bone which electrical properties are adopted from [4]. Finally, they are partially located in the vertebrae bone as shown in Scenario C. In this scenario, the plate was mounted on the vertebrae bone, and the screws were immersed in the bone. The implant was excited using a plane wave source to generate a homogeneous electric field in the sagittal plane. This excitation mimics the local electric field distribution at the test location in the standard RF-induced heating measurement and these scenarios were excited using the same exposure. The worst-case configuration for each scenario was selected based on 0.1 g peak SAR values and the maximum hot spots were observed.

The simulation results are summarized in Tab. 1. The worst-case configuration seems to differ when the implant was fully immersed in gel and bone. Moreover, the maximum hot spots changed from the tip of screws to the edge plate when the implant was mounted on the bone construct, as presented in Fig. 3.

As shown in Scenario C, hotspots may be raised in different tissues for partial-bone implants, and the maximum hotspot may differ from that assessed in the single tissue. Therefore, the workflow for identifying the worst-case configuration for a partial-bone implant should include simulating the bone construct. Thermal simulation is used as an alternative for preliminary processes, rather than calculating the SAR peak value based on electromagnetic simulation. Further work will involve performing a thermal simulation to demonstrate the difference

A framework for assessing the worst-case configuration for partial bone orthopedic implant is proposed. The electrical properties of the bone may change the maximum hot spot location of partial bone implants. Therefore, a bone constructing model should be included in the worst-case analysis.
Zainul IHSAN , Gregor SCHAEFERS (Gelsenkirchen, Germany)
11:15 - 12:00 #54418 - P312 Bootstrapping and cross-validation methodology on verifying prediction models for MRI RF-induced heating.
P312 Bootstrapping and cross-validation methodology on verifying prediction models for MRI RF-induced heating.

Bootstrapping provides a robust statistical framework for assessing the reliability and generalizability of RF induced heating prediction models, especially when only limited experimental data are available. In MRI safety evaluations, the accuracy of such models is crucial, as they are used to estimate temperature increases caused by radiofrequency (RF) fields during scans—effects that may present significant risks to patients. By strengthening model validation, bootstrapping facilitates compliance with international standards and regulatory guidelines, including ISO/TS 10974. It enhances transparency by enabling a clear and quantitative characterization of model uncertainty, thereby contributing to improved patient safety. In addition, incorporating bootstrapping into testing and validation workflows can streamline product development by enabling earlier, data driven decision-making and helping to reduce both time and costs associated with testing and regulatory approval.

An RF-induced heating prediction model for MRI typically consists of two primary components: 1. Transfer Function (TF): This function characterizes how the incident electric field accumulates along the length of an elongated implant, depending on its geometry and the surrounding tissue environment. It is derived from electromagnetic simulations or measurements under controlled exposure conditions. 2. Calibration Factor: This scalar value adjusts the TF output to reflect the actual temperature rise observed in experimental settings. It accounts for factors such as thermal conduction, perfusion, and measurement uncertainties. To establish the relationship between predicted and measured heating, experimental data are collected under standardized exposure conditions. These measurements are then compared with virtual predictions generated using the TF. A linear relationship is expected between the predicted and experimental values, with the slope of the regression line representing the calibration factor. To assess the reliability and quantify the uncertainty of this calibration, two statistical techniques were employed: bootstrapping and a modified 2-fold cross-validation.

A dataset comprising 15 pairs of experimental and predicted values was analyzed. In the first step, bootstrapping was applied to evaluate the robustness of the calibration factor. A total of 1000 bootstrap samples were generated by randomly selecting data points from the original dataset with replacement. For each sample, a linear regression was performed, and the slope of the regression line was recorded. The resulting distribution of slopes was visualized in a histogram (Figure 1), providing insight into the variability and confidence intervals of the calibration factor. In the second step, a modified 2-fold cross-validation approach was used to assess the stability of the calibration. The original dataset was randomly split into two subsets: a training set containing 8 non-repeating elements and a test set with the remaining 7. This process was repeated 1000 times. For each iteration, a linear regression was applied to the training set to determine a calibration factor. This factor was then used to scale the predicted values in the test set, and a second regression was performed to evaluate how well the scaled predictions matched the experimental data. The distribution of the resulting slopes is shown in Figure 2.

The bootstrapping and cross-validation methods produced approximately normal distributions of calibration factors. The mean values were consistent with the expected calibration factor derived from the full dataset, reinforcing the validity of the TF and the modeling approach. The confidence intervals derived from the bootstrap analysis provide a quantitative measure of uncertainty, that can be incorporated into the model’s uncertainty budget. This is particularly valuable for regulatory submissions, where transparency and traceability of model performance are essential. The cross-validation results further demonstrated that the calibration factor remains stable across different subsets of the data, indicating that the model is not overly sensitive to specific data points and is likely to generalize well to new scenarios.

Bootstrapping is an effective and practical method for evaluating RF-heating prediction models in MRI safety. It provides a quantitative measure of model accuracy and uncertainty. The insights gained from the bootstrapped distributions enhance transparency and confidence in the model’s performance, which is crucial for both clinical applications and regulatory approval. The additional use of cross-validation supports the robustness of the calibration factor, further validating the model’s predictive capabilities. Future work will focus on comparing these results with other established validation methodologies, such as leave-one-out cross-validation and Bayesian inference, to further refine uncertainty estimation and improve model reliability.
Wolfgang GÖRTZ , Gerrit SCHÖNWALD , Gregor SCHAEFERS (Gelsenkirchen, Germany)
11:15 - 12:00 #54497 - P313 Safety evaluation of gradient coil and patient positioning innovations for accessible MRI.
P313 Safety evaluation of gradient coil and patient positioning innovations for accessible MRI.

Although clinical workflows aim to maximise patient access to MRI, access remains limited by system availability, but more importantly, by operational constraints. This challenge is expected to worsen with ageing populations, which increases demand for MRI in diagnosis and disease progression monitoring, particularly for conditions such as dementia [1-4]. Concurrently, screening programs for earlier diagnoses of diseases is expanding while staff is severely limited, highlighting the need for more accessible and partially autonomous MRI solutions. Trained MR personnel are essential for routine system checks and to support patient comfort during scanning. This is especially important in MRI, which can be claustrophobic, loud, and disorienting for patients [5-8]. Improving the comfort and accessibility of MRI systems, alongside assistive automation, could alleviate the burden on MR personnel while enhancing patient compliance and increasing overall access to MRI. The Scan2Go project addresses these challenges by developing a more accessible, faster, and quieter MRI system [9,10]. This includes design modifications such as a patient chair to support patients with reduced mobility, an ultrasonic gradient coil, and a wider-spaced receive (Rx) coil. However, these modifications require rigorous safety validation prior to clinical use. This work presents safety testing of key system components, focusing on gradient coil safety and use of the patient chair.

The Scan2Go design is described in references 9 and 10 [9,10] and includes a patient chair (INNO-Mechatronics, Eindhoven, the Netherlands), a gradient coil (Futura Composites, Heerhugowaard, The Netherlands), and Rx coils (Tesla Dynamic Coils, Zaltbommel, the Netherlands) (Figure 1). The gradient coil underwent peripheral nerve stimulation (PNS) testing in 11 volunteers (4F, 7M), with the head positioned at isocentre. A 1 ms sinusoidal waveform was applied using an NG500 amplifier (Prodrive, The Netherlands), with gradient strengths up to 22 mT/m. Thermal measurements were performed using optical probes (OPSens Solutions) placed on the gradient coil capacitor bank, windings, and at the gradient insert isocentre during a T1-weighted scan with active water cooling. Acoustic noise was assessed by recording peak sound pressure levels during a typical T1-weighted scan and with the gradient coil driven at 20 kHz, using a microphone (Behringer ECM8000) positioned near the expected ear location. The system was calibrated with a sound calibrator (Type 4231, Brüel & Kjær, Denmark), and audio data were processed in MATLAB. An emergency evacuation scenario was evaluated with trained MR personnel, where a single operator performed the evacuation procedure. B0 field drift measurements were conducted during both fast and slow chair movements (rotation and translation) during scanning.

No volunteers reported PNS at the tested gradient strengths (Figure 2a). Thermal measurements (Figure 2b) showed that, with active water cooling, no temperatures exceeded 25 °C across all probe locations. Acoustic measurements (Figure 3) demonstrated a lower peak sound pressure level for the gradient insert (109 dB) compared to the whole-body gradients during a T1-weighted scan (117 dB). B0 field drift measurements during chair movement (Figure 4) showed a maximum drift of ~4.5 ppm (6.75 µT at 1.5 T), with field stabilisation occurring within ~2 s post-movement. The evacuation procedure was successfully performed by a single operator with an evacuation time deemed acceptable by MR personnel.

The gradient and Rx coils met PNS and temperature safety requirements, supporting their use in patient imaging and enabling reduced acoustic noise levels compared to conventional imaging sequences. Field stabilisation following chair movement demonstrates that a steady imaging state is rapidly recovered, indicating that replacing the patient bed with a chair does not compromise image quality while improving accessibility for patients with reduced mobility. The successful completion of evacuation procedures further supports the feasibility of the chair for clinical use. However, evacuation by a single operator required substantial physical effort, and additional modifications are needed to ensure safe operation in scenarios such as power failure. Overall, these results demonstrate that with further developments in the evacuation method, the Scan2Go system has the potential to be safely integrated into clinical workflows. Therefore, supporting more accessible and quieter MRI while contributing towards the development of (assistive) autonomous MRI systems.

The Scan2Go gradient and receive (Rx) coils met safety requirements, supporting their use in patient imaging. With further refinement of the evacuation procedure, the system can be safely integrated into clinical workflows with reduced operator dependency, helping to alleviate workload and improve access to MRI, in line with the Scan2Go vision of assistive, autonomous MRI.
Michael MCGRORY (Utrecht, The Netherlands) , Thomas ROOS , Edwin VERSTEEG , Mark GOSSELINK , Cezar ALBORAHAL , Thijs VAN HOOREN , Carel VAN LEEUWEN , Hans VAN DEN BERGE , Andrew KIROLOS , Christien MENSINGA , Martin OOME , Wout SCHUTH , Martino BORGO , Jeroen SIERO , Dennis KLOMP
11:15 - 12:00 #54215 - P314 Preparing the mind for MRI: Development of a bespoke mindfulness-based cognitive training tool for use before and during an MRI scan.
P314 Preparing the mind for MRI: Development of a bespoke mindfulness-based cognitive training tool for use before and during an MRI scan.

Patients undergoing MRI can experience strong feelings of anxiety and distress, which can sometimes make it difficult to complete the scan, or lead some to avoid having the scan altogether. Even where patients do manage to complete a scan, many still experience worry or discomfort that may affect how they feel about future scans. There are different ways to help patients cope with these fears. One approach that has been shown to reduce stress and anxiety in other situations is mindfulness meditation. This presentation reports the phase 1 of a UK College of Radiographers Industry Partners funded project which aimed to develop a mind training resource designed specifically for patients facing MRI scan, both in preparation and during.

For this first phase of the project, a mindfulness-based cognitive training resource was co-developed by the research team with active involvement of a patient and public (PPIE) group. All members of the group had experienced MRI scanning before, with 3 out of 5 having some level of heightened anxiety or a claustrophobia response to the experience. A draft resource, script, and then recordings, were shared with members of this group. Feedback obtained throughout the development process was iteratively used to amend and evolve the resource to ensure its relevance and fit. Institutional ethics approval was received for this phase of the project.

Following completion of this phase, a fully formed mind training resource has been developed, ready for testing in phase 2. The resource comprises of psycho-educational content and a series of mindfulness-based guided meditations which draw on established cognitive behavioural techniques.

A mind training tool has been developed which has been informed my patients and members of the public to ensure its relevance and suitability for the common concerns experienced. Phase 2 of the project will recruit patients booked for MRI to assess the tools early efficacy and obtain feedback from patients actually facing a scan.

This project is an example of multidisciplinary working between radiographic and psychology colleagues to address a common clinical problem. Engagement and involvement with patients and the public helped ensure the content developed was relevant, realistic and supportive.
Darren HUDSON (Exeter, United Kingdom) , Jerry FOX
11:15 - 12:00 #54214 - P315 From Field of View to Point of View: An Educational Evaluation of integrating Virtual Reality as a Tool to inform Experiential Learning in MRI Education.
P315 From Field of View to Point of View: An Educational Evaluation of integrating Virtual Reality as a Tool to inform Experiential Learning in MRI Education.

Newly qualified radiographers are required to perform a range of MRI examinations. Achieving proficiency involves more than technical capability; it also requires learners to demonstrate effective person-centred care. This includes the ability to recognise, understand and appropriately support claustrophobic and/or anxious patients, who are frequently encountered in the MR environment. Consequently, pre-registration learners must be provided with meaningful opportunities to develop both technical insight and empathic awareness.

An educational session was delivered consisting of an immersive MRI-based virtual reality (VR) experience, framed by evidence-based, seminar-style teaching focused on patient experience, communication, and strategies for supporting individuals during MRI. Data were gathered using a survey comprising closed and open-ended questions, administered at both the start and end of the teaching session. Analysis comprised of descriptive statistics of reported feedback ratings, and content analysis of open comments provided. Evaluation adhered to the institutional review process.

All participants demonstrated an increased understanding across the assessed domains having completed the teaching session. Responses indicated a clearer appreciation of both the emotional challenges faced by patients and the radiographer’s role in providing reassurance and support. Feedback consistently highlighted the value of undergoing the VR experience in enhancing perspective awareness and empathy, with the seminar content perhaps having more influence over behavioural intent. Participants regarded both elements of the session as complementary and mutually reinforcing, supporting Kolb's Experiential Learning Cycle.

As radiographic services face rising demand, and literature suggests radiographers may become task-focused, teaching methods that strengthen awareness of patient experience are essential. This evaluation suggests that VR, when integrated with evidence-based theoretical teaching, offers a promising educational approach for promoting person-centred MRI practice.

There is an ongoing need to better prepare learners for the challenges involved in supporting patients undergoing MRI. A key aspect of this is developing an empathic understanding of what the experience is like for patients to help better understand their perspective and how to best support them. This evaluation indicates that a combined evidence-based seminar with the opportunity to experience a scan in immersive VR appears to be a beneficial means of doing so. Being able to experience a virtual scan supported perspective taking, whilst seminar content reinforced behavioural intent.
Darren HUDSON (Exeter, United Kingdom) , Christine HEALES
Palau Sira
12:00 LUNCH BREAK & LUNCH SYMPOSIUM

"Friday 02 October"

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B2LS
12:00 - 13:00

LUNCH SYMPOSIUM SIEMENS

Sala de Cambra
13:30

"Friday 02 October"

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A23
13:30 - 15:00

EIBIR
European Research Funding: Proposing the Future

13:30 - 13:50 Funding the Future of MRI Research: European Opportunities and Upcoming Calls. Monika HIERATH (Speaker, Austria)
13:50 - 14:10 Turning Ideas into Funded Projects: How EIBIR Supports Your Path to European Funding - Lessons from EUCAIM and ODELIA. Katharina KRISCHAK (Speaker, Austria)
14:10 - 14:30 How to Write Successful Funding Applications and Having Fun in the Process. David KARLIN
14:30 - 15:00 Panel Discussion. Luis MARTI-BONMATI (Speaker, Spain), Esther WARNERT (Speaker, The Netherlands), Dennis KLOMP (Speaker, The Netherlands)
Sala Simfònica

"Friday 02 October"

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B23
13:30 - 15:00

LTB2-2 Scientific session
MRI Hardware and Emerging Methods

13:30 - 13:33 #53460 - PG098 IEEE 1588 Precision Time Protocol Trigger Synchronization for Sequence-Relative Experimental Devices Using MaRCoS Firmware.
PG098 IEEE 1588 Precision Time Protocol Trigger Synchronization for Sequence-Relative Experimental Devices Using MaRCoS Firmware.

External synchronization is required for MRI stimulus presentation, field monitoring, and sequence-synchronized sensor workflows [1, 3]. Figure 1 shows the use case considered here: distributed sensors sample selected gradient plateaus at sequence-relative positions. The sensors are intended to characterize the gradient response itself, including settling behavior and plateau stability. Their readout must therefore be referenced to a defined point within each gradient event, for example a few milliseconds after the programmed plateau onset. Software-only PTP is insufficient for this task. linuxptp/ptp4l without hardware timestamping typically reaches 10 μs to 100 μs accuracy [4]. This may be adequate for scan-start alignment or for reacting to user inputs, such uncertainty can shift a field measurement within the transient part of a gradient event and can mask differences between repeated events, or long-term synchronization. Software timestamping is affected by operating-system scheduling, network-stack latency, which limits deterministic sequence-relative triggering. Hardware-timestamped IEEE 1588 PTP can achieve nanosecond-range synchronization [4]. Direct integration into the MRI console would require firmware modifications. We therefore evaluate external hardware-timestamped PTP trigger nodes for deterministic sequence-relative triggering of distributed external sensors.

A synchronization concept based on IEEE 1588 PTP was implemented. Existing MaRCoS trigger handling pauses execution until an electrical input trigger is received [ 3]. The trigger instruction is injected automatically (Figure 2), and the patched sequence is sent to the MaRCoS firmware. A console-side hardware-timestamped PTP node generates the sequence-release GPIO trigger at a scheduled PTP time. Additional PTP nodes use the same origin to generate synchronous or delayed GPIO outputs. Sequence-relative trigger times are programmed as offsets, while the firmware remains non-PTP-aware and receives only a GPIO falling edge. PTP trigger nodes used NXP FRDM-MCXN947 platforms and Ethernet control. For startup, the experiment- control computer requests all nodes to fire at the next full PTP second. The console-side node emits the sequence-release pulse, while external-device nodes generate outputs for annotated events, such as sensor readout at selected gradient events (Figure 1). Timing measurements used three PTP nodes synchronized to a GPS- disciplined grandmaster through a PTP-aware switch (Figure 4). A logic analyser measured node-to-node offsets and console response latency on a Red Pitaya SDRLab 122-16.

The workflow defines a shared PTP trigger origin for a free-running sequence and distributed external hardware. After the patched sequence reaches the injected trigger instruction (Figure 2), the console-side PTP node releases execution by hardware trigger. External sensors receive GPIO edges at sequence release or programmed sequence-relative offsets. Logic-analyser measurements between three PTP-synchronized trigger nodes showed mean offsets of 30.4 ns, 1.1 ns, and 28.5 ns for modules A–C, with standard deviations of 13.6 ns, 13.8 ns, and 13.7 ns. Maximum offsets were below 100 ns, and the pooled 95th percentile was below 56.0 ns. These offsets are more than four orders of magnitude below the sub-millisecond tolerance of the gradient-plateau readout use case. MaRCoS response latency from the PTP falling edge to the first sequence-generated GPIO marker was 84 ns median, 90 ns maximum, and 2.7 ns standard deviation.

The method transfers timing-critical trigger generation from the console to hardware-timestamped PTP nodes. It enables reproducible triggering of sequence-relative devices without console modification, trigger fanout, or native console PTP support, consistent with efforts to reduce scanner-side software changes and timing cabling [2]. Timing errors are governed by PTP-node synchronization offset, measured below 100 ns, and firmware GPIO-response latency, largely static around 84 ns and compensable by a fixed offset. The demonstrated synchronization applies to external GPIO edges, the MRI sequence-release edge, and the measured MaRCoS response to the first sequence-generated GPIO marker, but not to internal MRI events without event-specific validation.

IEEE 1588 PTP-based external trigger scheduling enables non-invasive synchronization of sequence-relative experimental devices with the consoles sequence. Combining the sequence trigger mechanism with lost cost hardware-timestamped PTP trigger nodes references external sensor trigger edges and the MRI sequence- release edge to a shared absolute timebase and defined sequence-relative offsets, without dedicated timing cabling or firmware modification. The architecture improves timing determinism compared with software-only PTP, preserves compatibility with existing electrical trigger interfaces, and scales to distributed sensor setups by adding synchronized trigger nodes rather than scanner-side wiring or firmware changes.
Marcel OCHSENDORF (Aachen, Germany, Germany) , Aleksander STEPIEN , Tom MERTEN , Robin LINTERMANN , Kostiantyn LAVRONENKO , Marian FREI , Felix DAHMS , Emilia YIN-GROßMANN , Yannick KUHL , Volkmar SCHULZ
13:33 - 13:36 #54130 - PG099 From phantom studies to routine clinical prostate MRI: a 64-channel ultra-flexible RF coil.
PG099 From phantom studies to routine clinical prostate MRI: a 64-channel ultra-flexible RF coil.

Conventional RF coil configurations for prostate and pelvic MRI often provide limited depth sensitivity and incomplete anatomical coverage, particularly in patients with varying body habitus, potentially affecting image quality and diagnostic performance [1]. While endorectal coils can achieve high local sensitivity, their limited field-of-view and reduced patient comfort restrict routine clinical applicability [2-4]. At Hospital Universitario y Politécnico La Fe (Valencia, Spain), prostate MRI examinations are routinely performed using a 20-channel anterior array combined with a 40-channel spine coil (Coil20+40). This setup presents limitations in signal uniformity and anatomical coverage across patient anatomies. To overcome these constraints, last year we developed an ultra-flexible 64-channel RF coil (Coil64) with optimized geometry and AIR™ Technology [5,6]. Now, we present the evaluation of its performance and the introduction of Coil64 into routine clinical prostate MRI workflows, enabling improved conformity and extended coverage, as well as enhanced image quality.

The coil array design and fabrication was previously reported [7,8]. A schematic overview and fabrication details are shown in Figure 1. We evaluated performance on phantoms and volunteers on a 3T SIGNA Architect system (GE Healthcare, Hospital Universitario La Fe, Valencia, Spain). We quantified signal-to-noise ratio (SNR) relative to the integrated body coil (CoilBody) using Spoiled Gradient Echo (SPGR) sequences, chosen over Spin Echo (SE) due to short dielectric wavelength effects in the phantom. We measured performance across different acceleration factors and compared with the available Coil20+40 (using the 38 automatically selected channels). Currently, Coil64 is being applied in clinical patient studies using an optimized prostate imaging protocol based on DL-accelerated [9,10] 2D FSE with Field of View Optimized and Constrained Undistorted Single-shot (FOCUS) and spatial resolution of 0.4x0.7x3.0 mm³. The Variable Density Poisson Disk (VDPD) sampling strategy [11] is used with an acceleration of 2.5. The protocol includes DWI sequences with in-plane spatial resolution of 1.4x1.4x3.9 mm³ and a total acquisition time of approximately 10 minutes. The same protocol is run with Coil20+40 in the same patients for comparison purposes.

Figure 2 shows the phantom SNR tests performed with the novel Coil64 and the reference Coil20+40. It includes the calibrated SNR density plots that show, for acceleration factors up to 3x3, how much higher the SNR of Coil64 and Coil20+40 is compared to the non-accelerated CoilBody. Figure 3 presents the SNR evaluation for a volunteer. For each coil, it includes the calibrated SNR density plots for acceleration factors up to 4x4 and the percentage of pixels in the accelerated images with higher SNR than the non-accelerated CoilBody. Finally, Figure 4 presents an axial 2D FSE T2-weighted with FOCUS excitation image from a clinical case, acquired with both Coil64 and Coil20+40 at Hospital La Fe, as part of the optimized prostate protocol for clinical studies.

SNR analysis in phantoms showed that Coil64 provided up to 43x higher SNR than CoilBody in the region that would correspond to the prostate location, compared to just 19× for Coil20+40. Coil64 maintained superior performance at 2x2 and 3x3 acceleration factors. In vivo analysis indicated that at acceleration 1x1, Coil64 achieved over 50x higher SNR than CoilBody in the equivalent prostate region, whereas Coil20+40 did not exceed 20x. At 4x4 acceleration, 58% of pixels in Coil64 exceeded the non-accelerated CoilBody SNR, compared to 41% for Coil20+40, demonstrating improved robustness under acceleration. Volunteer scans further confirmed excellent anatomical coverage and adaptability across a wide range of body sizes. Patient studies, which used the clinical protocol with both coils, showed consistently higher image quality with Coil64, achieving improved tissue contrast and anatomical detail. These improvements, attributed to the higher number of imaging-effective channels and their optimized geometry, support the clinical applicability and superior performance of the proposed coil.

We developed a novel 64-channel RF coil enabling high-quality prostate imaging with broad anatomical coverage and adaptability across a wide range of body sizes. Its increased SNR, exceeding twice that of the reference coil in both phantom and in vivo studies, translates into improved tissue contrast and sharper anatomical detail, highlighting its potential to enhance prostate MRI performance in clinical practice, where it is already in routine use.
Jesús CONEJERO (Valencia, Spain) , José DE ARCOS , Victor TARACILA , Jana VINCENT , José Miguel ALGARÍN , Arnaud GUIDON , Luis MARTÍ-BONMATÍ , Leonor CERDÁ-ALBERICH , Fraser ROBB , Joseba ALONSO
13:36 - 13:39 #54357 - PG100 Fully wireless receive-only RF coil with analog optical signal transfer.
PG100 Fully wireless receive-only RF coil with analog optical signal transfer.

Wireless detection coils for MRI promise improved image quality, patient safety and comfort [1,2]. However, the implementation of actual stand-alone coils has proven to be very challenging. Wireless digital GHz links have been proposed, but only sub-system components have actually been used and characterized in the MRI environment [3,4,5], with power consumption, ADC clock synchronization and electromagnetic interference (EMI) as open challenges. Alternatively, optical fiber links [6,7,8] provide immunity to EMI, low power consumption and quasi unlimited bandwidth for multiplexing for high-channel-count arrays. However, usability is still limited by the length and maximum bending radius of the fibers, and eye-safety concerns are imminent in case a fiber carrying high-power optical signals breaks. Optical free-space transmission has been proposed, but only for digital signals, and tests have been performed with non-MR-compatible components in a de-magnetized bore [9].

In this work, a completely wireless receive-only coil for 3 T MRI is investigated based on an analog optical free-space signal link, an infrared (IR) link for detuning signals and power supply via non-magnetic batteries (rechargeable LiPo; tattu, Grepow Inc, USA), see Fig. 1. MR signal link (Fig. 2): A standard receive-only loop coil (d = 7.5 cm) was constructed. Directly after the on-coil preamplifier, the signal (123 MHz) is routed to an optical emitter board, directly modulating the intensity of a 680 nm vertical cavity surface emitting laser (VCSEL; VD-680C-005M-XX-2A0, LaserComponents, GER). Laser power is < 1 mW (optical, eye-safe). The corresponding high-speed optical receiver, mounted at the ceiling of the scanner bore, is realized as an application specific integrated circuit (ASIC) with integrated photodiode, transimpedance amplifier and 50Ω output driver fabricated in 0.35 µm CMOS. From there, the (now again electrical) signal is connected to the MR scanner via an interface plug. The receive chain and image reconstruction unit of the scanner are used, as if the coil was connected using coaxial cables [10]. Detuning link (Fig. 3): Active transmission decoupling is achieved by a conventional PIN diode switched trap circuit. The trigger signal is transferred via an infrared link, composed of a 940 nm LED (TSAL6400) and matching silicon PIN photodiode (BPV22NF), which were chosen for relatively large viewing angles, ensuring robustness against misalignment, as well as low power requirements. A microcontroller (RP2040) is used on both sides to process incoming and outgoing signals, also providing the required voltage and current for the on-coil detuning circuit from non-magnetic batteries. If the IR link is interrupted, the coil is automatically set to detuned mode as safety feature. Custom 3D-printed, copper-plated covers shield both units to minimize EMI [11]. All components of the optical wireless link are fixed in a custom-made full-plastic mechanical set-up for stability and reproducibility, containing an xy-stage for manual fine-alignment of the optical receiver to the laser beam. The set-up is placed inside the scanner bore, close to the isocenter, for evaluation measurements, see Fig. 2. In 3 T MRI (PrismaFit, Siemens Healthineers, GER), 3D GRE images of a saline phantom (24 x 20 x 15 cm3, 5 g/l NaCl, 1 ml/l Gadoteridol) were acquired with the wireless receiver coil. Flip angle maps [12] and noise spectra (across total MR receiver bandwidth, without excitation) were acquired with the scanner’s whole-body coil to investigate potential Tx and EMI artifacts. For comparison, MR measurements were repeated with the same surface coil but cable connection.

Only a marginal performance degradation was observed for the optical in comparison to the cable connection, resulting in a successful proof-of-concept. Images acquired with the wireless coil are shown in Fig. 4, as well as the active detuning performance and EMI-free noise spectra. Remarkably, the SNR performance is non-uniform across the imaging volume and shows orientation dependence (72-95% of cable). This is potentially caused by nonlinear effects such as compression or limited dynamic range, additionally/alternatively to slight phase or gain instabilities.

The analog optical wireless approach keeps the on-coil footprint and power requirements minimal and significantly reduces the probability of EMI and susceptibility artifacts caused by components of the wireless link. In contrast to other works, we explicitly focus on MR compatibility and tested all our components at isocenter. Future work comprises an extended characterization of the link with more demanding sequences, multiplexing strategies for RF arrays, the investigation of low power detuning approaches [13,14] and shield-free microcontrollers [15-17], as well as the automatization of the beam alignment [18].

This work successfully demonstrates that fully wireless RF coils can be realized using optical signal transmission schemes.
Roberta FRASS-KRIEGL (Vienna, Austria) , Michael KUSOLITSCH , Jean-Lynce GNANAGO , Michael Franz HAUSER , Julian MAYER , Lukas BAUMGARTNER , Andreas HODUL , Kerstin SCHNEIDER-HORNSTEIN , Michael HOFBAUER
13:39 - 13:42 #54665 - PG101 A 16-channel coil for 7T fMRI and in-situ tFUS stimulation of the Non-Human Primate.
PG101 A 16-channel coil for 7T fMRI and in-situ tFUS stimulation of the Non-Human Primate.

The Confucius project provides a novel non-invasive method of “simultaneously” inducing and observing functional changes. Transcranial Focused Ultrasound Stimulation (tFUS) [1] is coupled with functional MRI to stimulate key areas of the brain and observe the resulting change of brain activity of an anesthetized NHP via the BOLD effect. In this context, a custom coil array is needed to accommodate an ultrasound probe (manufactured by Therasonic, Paris, FR) and interfacing gel in the MRI bore. The RF coil, once placed, should allow for a stereotactic frame and an ultrasound probe with a water balloon to be placed. In addition, the ultrasound emission cone should be able to reach any point within the thalamus. In this abstract, we propose a coil made of 16 loops (14 high-impedance loops and 2 detachable low-impedance loops) allowing concurrent fMRI and in-situ tFUS of the non-human primate at 7T.

Accounting for the space requirement imposed by the tFUS system, 14 HICs of 40-mm diameter were designed. The HICs have significant decoupling properties [2, 3], allowing for freedom of placement within the antenna casing that would not be possible with traditional LICs (or without custom-making each coil to provide specific overlaps and mutual decoupling). Using Ansys HFSS, the HICs were tuned at the proton Larmor frequency at 7 T (297.2 MHz) by optimizing geometric parameters such as gap size and spacing, as well as inner and outer conductor sizes (Fig. 1.A & 1.C). The resulting coils are printed as flexible 25µm-thick polyimide PCBs (Fig. 1.B). A DC-DC voltage regulator is placed between each preamplifier and the MRI vendor (Siemens TerraX) interface in order to supply 3 V to the MAAL-011204 preamplifier from the 10 V originally supplied by the Siemens interface. For practicality, the voltage regulator boards are outside the antenna casing and are stored in 3D-printed PETG racks, which can be taped or screwed to the MRI bed (Fig. 3.B). The board enclosures are designed with ease of maintenance and heat management in mind. Floating cable traps [4] are designed and manufactured to be placed around each cable bundle (one per side) in order to mitigate common-mode currents. Using 51.5mm long half tubes made of polycarbonate coated with copper tape and tuned with two capacitors, the cable traps attenuate the common-mode signal on the outer conductors of the coax cables to the order of 30 dB. After coil placement, the coils were taped on the inner casing surface using Kapton (Fig. 3.A) and cables were passed through a cable gland placed at the back of the casing. The casing was then closed with the outer casing parts (Fig. 2). The latters are 3mm thick to add structural integrity, whereas the inner casing is 1.5mm thick to place the coils as close to the subject as possible. The assembly was then sealed with low-temperature hotmelt to achieve a gel-tight assembly. The two antenna sides and a sealed 135x150mm oval Tx antenna were then placed and secured around a 100mm spherical phantom using Zip Ties (Fig. 3.B) in accordance with the research team’s experiment protocol.

The SNR was compared, using the same sequence, to the commercial Nova 32Rx coil (Nova Medical Inc, Wilmington, MA). The flip-angle corrected SNR measurements (Fig. 4.A) performed on phantom allowed us to demonstrate a satisfying symmetry and coverage. Due to the small phantom size, dielectric resonance effects are visible when using the Nova coil, resulting in high SNR at the center. For the proposed coil, the close proximity of the loops to the phantom significantly increases the SNR on the periphery. The noise correlation matrix (Fig. 4.B) demonstrates the advantage of using the HIC by its strong decoupling properties, resulting in low non-diagonal values despite some channels being placed inhomogeneously. The measured mean off-diagonal correlation for the proposed Confucius coil is 0.04 and that of the Nova coil is 0.11.

It can be noted that SNR decreases toward the back of the phantom due to the phantom curvature being different than that of an NHP head, resulting in increased distance between the coil and the load, and thus lesser loading. In this experiment, the two detachable LICs were not used (channels 2 and 10), and one HIC (channel 11) had a lower gain than its neighboring elements, likely due to a mechanical/electrical issue on this channel.

A 16-channel antenna allowing transcranial Focused Ultrasound Stimulation in fMRI has been presented. The robust decoupling capacity of the HIC allow for a freedom of placement that made the antenna feasible with a single coil design. The resulting antenna provides satisfying coverage while protecting both the subject and the equipment from hazard related to introducing gel in an electrical setup. Future work will include in-vivo testing with the tFUS system, including the two detachable LICs to gain SNR in the ventral parts of the brain.
Robin ZIMMER (Paris-Saclay) , Paul-François GAPAIS , Michel LUONG , Alexis AMADON , Béchir JARRAYA , Qi ZHU
13:42 - 13:45 #54703 - PG102 Improving transmit magnetic field homogeneity using a neurovascular head and neck coil with a single set of tailored parallel transmission pulses.
PG102 Improving transmit magnetic field homogeneity using a neurovascular head and neck coil with a single set of tailored parallel transmission pulses.

A 7 tesla (7T) neurovascular head-and-neck (NVHN) coil [1] provides coverage of the brain and cervical spine regions, enabling various neurovascular imaging techniques at ultra-high field (UHF). UHF MRI systems improve signal-to-noise ratio (SNR) and parallel imaging capabilities. However, increased magnetic field strengths result in a higher Larmor frequency. This translates to a shorter radiofrequency (RF) wavelength leading to non-uniformities in the transmit magnetic field (B1+). Parallel transmission (pTx) technology enables efficient RF pulse designs to mitigate the B1+ problem [2]. With a single dedicated NVHN coil (Fig 1) tailored pTx pulse designs can remain more streamlined without the need of coordinating pTx pulse design workflows for multiple coils which image different anatomical regions. Here we demonstrate insight into the benefits of using tailored pTx pulses to improve signal uniformity across the brain and neck region in vivo when imaging with a NVHN coil.

All data were collected on a 7T Terra system (Siemens Healthineers, Erlangen, Germany) using a custom-built 8TxRx56Rx NVHN coil. Local ethics committee approval and informed consent were obtained prior to healthy volunteer scanning. In vivo pTx calibration measurements were acquired as previously shown by Wu et al [3]. Absolute B1+ maps using SA2RAGE [4] in circularly polarised (CP) mode were acquired in combination with a 2D GRE sequence that acquired relative sensitivity maps for each transmit channel to generate a complete set of independent transmit channel absolute B1+ maps. Non-selective subject specific pTx pulses (8 kT-points [2], duration=1.66ms) were designed using the spatial-domain-method with a magnitude least squares approach [5,6]. Acquisitions were made using the standard non-selective excitation pulse in the circularly polarised (CP) mode and with tailored pTx pulses. 3D GRE (TR=50ms, TE=4ms, 4x4x4mm3, GRAPPA=3) datasets were acquired with 5deg flip-angle pulses for flip-angle mapping. Higher resolution structural images were acquired with the following parameters for T1-weighted MPRAGE (FA=5deg, TR=10ms, TE=4ms, TI=1200ms, 0.8x0.8x0.8mm3, GRAPPA=2) and T2*-weighted 3D GRE (FA=5deg, TR=35ms, TE=4ms, 0.75x0.75x0.75mm3, GRAPPA=4). A multi-echo 3D GRE (6-echos, FA=15deg, TR=27ms, TE=4.68/7.92/11.16/14.4/17.64/20.88ms, 0.7x0.7x0.7mm3, GRAPPA=4) was also acquired to reconstruct susceptibility weighted images (SWI) using CLEAR-SWI [7].

Excitation fidelity was significantly improved using tailored pTx pulses particularly in the cerebellum, peripheral regions of the brain and extending down to the upper central neck region when compared to CP-mode (Fig 2). A median of 22% improvement in excitation fidelity was achieved using pTx pulses across five subjects. Figure 3 shows that with tailored pTx pulses the improved signal uniformity achievable across different subjects is consistent. Furthermore, higher resolution T2*-weighted, T1-weighted and SWI images were collected to visually assess signal and contrast uniformity (Fig 4).

Tailored pTx pulses were able to mitigate non-uniform signal variations across the brain and further extending coverage down to the upper neck using a single set of optimised pulses. As seen in Figure 3, variability in image quality across subjects were observed in CP-mode. This is largely due to variations in head and neck shapes and sizes, limiting efficient positioning in the RF coil which can impact the B1+ uniformity significantly. However, with the use of tailored pTx pulses, subject variability could be addressed, improving excitation fidelity across all subjects. The improved signal and contrast uniformity at higher resolutions also suggests that the enabled simultaneous head and neck imaging using a custom NVHN coil combined with capabilities of pTx have potential benefit for various clinical applications. Initial look into SWI imaging was performed. However, optimisation to address impacts of B0 variation due to the extended coverage need to be further investigated. In saying so, the study provides promising insight in the ability to streamline pTx pulse optimisations in more advanced MRI techniques with targeted interest in both the brain and neck regions such as MR angiography and perfusion imaging.

A single set of conventionally optimised tailored pTx pulse can improve excitation fidelity across both brain and neck regions at 7T using a dedicated NVHN coil. It demonstrates promising potential in incorporating pTx pulses in more advanced MRI techniques with targeted interest for both brain and neck regions.
Chia-Yin WU (Glasgow, United Kingdom) , Divya BASKARAN , Keith MUIR , Natasha E. FULLERTON , Shajan GUNAMONY , David PORTER
13:45 - 13:48 #54410 - PG103 High-SNR ³¹P cryoprobe and optimal-control RF Pulses: A perfect match for B₁-independent T₁ mapping in magnetization transfer spectroscopy.
PG103 High-SNR ³¹P cryoprobe and optimal-control RF Pulses: A perfect match for B₁-independent T₁ mapping in magnetization transfer spectroscopy.

The low gyromagnetic ratio of the ³¹P nucleus leads to intrinsically low SNR, challenging small-voxel ³¹P spectroscopy. Cryogenic radiofrequency probes have been introduced to boost sensitivity in low-SNR applications [1,2]. In the first part of this study, we compare a conventional room-temperature ³¹P surface probe with a geometrically matched high-SNR ³¹P surface cryoprobe at 9.4 T, focusing on SNR gain and penetration depth. Both probes are transmit/receive surface coils and exhibit pronounced B₁ inhomogeneity, which is detrimental for magnetization transfer (MT) spectroscopy, where accurate T₁ mapping depends on local B₁. In the second part, we implemented our B₁‑robust optimal-control (OC) RF excitation method [3] with the high-SNR ³¹P cryoprobe. Using these pulses in phantom chemical shift imaging experiments with the high-SNR ³¹P surface cryoprobe, we demonstrate consistent T₁ values for MT spectroscopy.

A ³¹P transmit/receive cryoprobe (rat head design) was compared with a geometrically matched 20 mm inner-diameter room-temperature ³¹P surface coil on a 9.4 T preclinical MRI system (Bruker BioSpec). B₁ field mapping was performed using the dual-angle method [4] in a phosphoric-acid phantom 3 mm-slice phantom (diameter = 29 mm) with a FLASH sequence (TE = 2.5 ms, TR = 10 s, flip angles = 45°/90°), yielding sensitivity profiles and SNR maps. For B₁-insensitive excitation, two flip angles (15° and 60°) were achieved using OC RF pulses optimized as in [3], accounting for chemical shift dispersion of ±12 ppm and B₁ variations from 40 % to 120 % of the nominal field at a nominal amplitude of 350 µT. Dual-angle T₁ mapping for MT measurements was demonstrated in a phantom consisting of five NMR tubes containing 20 mM phosphocreatine (PCr) and/or 10 mM ATP. Localized spectroscopy was performed using 2D chemical shift imaging experiment (2D-CSI; matrix size = 20 × 20, spatial resolution = 2 mm × 2 mm, TR = 800 ms, flip angles = 15°/60°, spectral bandwidth = 5882 Hz, 2048 complex points). Excitation was achieved either with conventional hard pulses (15°: RF amplitude 48.3 µT, duration 50 µs; 60°: RF amplitude 193.4 µT, duration 50 µs) or with optimal-control (OC) pulses (15°: RF amplitude 350 µT, duration 310 µs; 60°: RF amplitude 350 µT, duration 510 µs). Spectral fitting of PCr and γ-, α-, and β-ATP (peak assignments as shown in Fig. 3b) was performed using the AMARES algorithm in the jMRUI 7.0 software package. T₁ values are calculated as previously described [5].

Penetration depth and sensitivity profiles of the room-temperature (RT) coil and cryogenic (Cryo) probe are shown in Fig. 1a. The cryoprobe exhibited a marked sensitivity increase directly beneath the coil. Beneath the coil center, it provided a 4.16 ± 0.35-fold increase in SNR compared with the RT coil (Fig. 1b). The mean SNR gain across the entire sensitive volume was even higher (5.35 ± 4.51), consistent with improved penetration depth. Key parameters and simulated excitation efficiencies of the OC RF pulses in the presence of B₁ inhomogeneity and chemical shift dispersion showed that OC excitation yielded accurate flip angles, with standard deviations of only 7.09 % (15°) and 9.17 % (60°) within the targeted B₁ range of 40–120 % of the nominal field (Fig. 2). In the CSI phantom containing NMR tubes with PCr and ATP, positioned to span high-SNR regions near the coil surface and low-SNR regions up to 10 mm from the coil (mimicking the lower hypothalamus in rat brain) (Fig. 3a-b), conventional block (hard) pulse excitation led to overestimated T₁ values in surface-near voxels and underestimated T₁ at greater depth (Fig. 3c-d). In contrast, OC pulse excitation provided consistent T₁ values at both depths, yielding values in good agreement with literature: T1(PCr) = 3.57 ± 0.20 s and T1(γ-ATP) = 1.49 ± 0.06 s [6].

The observed performance of the ³¹P cryoprobe surpasses previously reported ¹H cryoprobe–room temperature coil comparisons in small mouse-brain geometries [7], highlighting the advantage of cryogenic detection for low γ nuclei and deep-tissue ³¹P spectroscopy. Based on coil sensitivity measurements, the B₁ field differs by ~60 % between samples proximal and samples distal to the coil surface. Despite this pronounced inhomogeneity, optimal-control RF excitation enables accurate metabolite T₁ quantification not achievable with conventional excitation.

OC RF excitation enables position-independent quantification of PCr and γ-ATP T₁ under pronounced B₁ inhomogeneity. The ³¹P cryoprobe provides the required substantial SNR gain and improved penetration depth. Together, B₁‑robust OC excitation and the cryocoil form a “perfect match” for ³¹P measurements, combining accurate, geometry‑independent T₁ quantification with high sensitivity in low‑γ nuclei. This synergy establishes a robust framework for quantitative ³¹P magnetization transfer spectroscopy in deep tissue regions, such as hypothalamic brain structures or cardiac applications.
Clemens DIWOKY (Graz, Austria) , Christina GRAF , Armin RUND , Alexander RAUSCHER , Helmar WAICZIES , Yinhao CHEN , Thoralf NIENDORF , Sonia WAICZIES
13:48 - 13:51 #54556 - PG104 An Ultra Low Cost Gradient Amplifier for Low Field MRI.
PG104 An Ultra Low Cost Gradient Amplifier for Low Field MRI.

Interest in low-field MRI is growing, particularly in Halbach-array scanners that reduce cost and infrastructure requirements. However, accessible systems also require affordable and reproducible electronics. Among these, gradient amplifiers remain challenging because they must deliver bidirectional, accurately controlled currents to inductive coils for spatial encoding. Existing solutions are expensive, complex, or oversized. Open source designs like the OSII amplifier target high currents and add monitoring and protection stages, reaching ∼USD 500 per channel in component cost. Audio amplifier adaptations perform well, but reported three axis builds cost ∼USD 1200 in components. Commercial units are robust but exceed the power and cost needs of small, passively cooled coils in compact low field systems. We therefore aimed for a sub-USD 100 in components per channel gradient amplifier, prioritizing simplicity, reproducibility, local manufacturability, and compatibility with low field MRI experiments.

The amplifier was designed for a 0.2 Ω, 10 μH load, driving a 6 A trapezoidal current with 0.5 ms rise/fall times. To avoid ground noise, switching EMI, and supply ripple, two 12 V, 7 Ah batteries power the circuit. Inspired by audio-amplifier-based gradient drivers, a closed-loop PI controller was chosen, sufficient for zero steady-state and low ransient error in the RL plant. It was implemented in analog form with a UA741CP op-amp in negative feedback and passive components, minimizing complexity. A class AB output stage was selected for its symmetric current delivery, zero offset, low distortion, low output impedance, and adjustable input impedance. To overcome the op-amp’s ∼20 mA output limit, a Darlington topology was used:a TIP3055/TIP2955 complementary pair as output devices (15 A max, 90 W, low VCE(sat)), driven by a BD139/BD140 pair with high hFE at the 100 mA collector current required by the TIPxx55. Bias voltage was generated with four 1N4148 diodes and a parallel potentiometer, giving a simple exponential-model match and thermal compensation of the quiescent current. To determine the topology parameters, control loop equations [1] and [2] are required. When Lload/Rload = CfRf , the closed-loop transfer function reduces to [3]. Here, CfRf = 50 × 10−6. We chose Cf = 1 nF as anchor, R1 = 0.1 Ω for good SNR in current measurement, R2 = 10 kΩ for low input loading, and R3 = 1 kΩ for a 1:1 voltage-to-current ratio. Using the code in the attached GitHub repository, C1 = 10 pF yielded a stable, damped response. Dynamic response and linearity were measured using trapezoidal, stepped, and amplitude-scaled voltage commands. The amplifier was then connected to an in house 5 mT/(m· A) gradient coil and integrated into a 46 mT Halbach-based MRI scanner built in Chile.

The amplifier was built using locally available through hole components and a simplified printed circuit board. The estimated cost was approximately USD 70 per channel, corresponding to about USD 210 for a three axis implementation. The prototype delivered up to ±6 A, matching the requirements of our current gradient coils. The current reached 6 A in approximately 60 μs, corresponding to a slew rate of approximately 0.1A/μ s. Step sequence experiments confirmed reproducible and linear current control from negative to positive command voltages, as shown in Fig.2. This supports the use of voltage scaled gradient waveforms for spatial encoding. When integrated into the 46 mT scanner, the amplifier enabled gradient encoded imaging of a four tube phantom, as shown in Fig.3.

The proposed amplifier matches circuit complexity to the needs of small low field MRI systems, rather than maximizing power. Compared with OSII gradient amplifiers, the design uses fewer components and omits monitoring stages, making it easier to assemble, debug, and reproduce in laboratories with limited resources. Compared with modified audio amplifier systems, the circuit avoids the cost and size of commercial audio power units while preserving analog current control and a linear power stage. The main limitation is that the PI controller is not universal and must be adapted to the target gradient load. Nevertheless, for low cost MRI, where coils are small and average power is limited, this load specific approach provides a favorable compromise between simplicity and performance.

We developed a sub USD 100 per channel gradient amplifier for low field MRI. It showed linear current control and was able to deliver ± 6 A, with SR =0.1A/μ s in a 0.2Ω, 10 μH load. The system was integrated into a locally built 46 mT Halbach array scanner, providing a simple and reproducible route toward accessible gradient hardware.
Felipe MARÍN (Santiago de Chile, Chile) , Belén BRAVO-KUNZ , Clemente SOZA , Carlos MILOVIC , Cristian TEJOS , Pablo IRARRAZAVAL
13:51 - 13:54 #54672 - PG105 Fast, quiet and accessible 1.5T brain MRI: the Scan2Go synergy of ultrasonic encoding and AI reconstruction.
PG105 Fast, quiet and accessible 1.5T brain MRI: the Scan2Go synergy of ultrasonic encoding and AI reconstruction.

A more accessible MRI workflow requires more than additional scanners: examinations must also become faster, more comfortable and less dependent on scarce expert operator time. The Scan2Go project targets this gap by replacing the conventional table-and-operator workflow with a seated, patient-centred 1.5T brain-MRI platform using a fixed, wide receive coil, and addressing automated planning, safety checks and patient guidance.[1,2] For scanning without continuous human coaching, speed and comfort are essential. However, existing acoustic-noise reduction methods often compromise performance or prolong scans.[3] Ultrasonic gradient encoding instead adds spatial encoding without the audible burden of rapidly switching conventional gradients.[4-6] AI reconstruction complements this by improving accelerated images despite less favourable signal and coil conditions. Together, these technologies may enable short, comfortable and operator-light scans without requiring high field strength or tight operator-positioned coils. In this work, we demonstrate this synergy in Scan2Go using accelerated TSE and FLAIR imaging, representing both the first 1.5T implementation of ultrasonic encoding and its first combination with AI reconstruction.

The Scan2Go setup was installed on a 1.5T MRI system (Philips, NL) and comprised a patient chair (Inno Mechatronics, NL), wide 8ch Rx coil (Tesla Dynamic Coils, NL), and a z-axis insert gradient (Futura Composites, NL).[1,2] The insert was driven by a modified NG500 1.3 amplifier (Prodrive, NL) with custom RMS feedback control for stable burst operation, through 3kV Faraday cage filters (EMIS, IN; Elincom, NL). The water-cooled resonant gradient and capacitor-bank system produced a sinusoidal field of 20.9 mT/m at 18.8 kHz, corresponding to a peak slew rate of 2470 T/m/s. Single-slice versions of the 2D TSE and 2D FLAIR scans, from the Scan2Go brain protocol depicted in Figure 3, were acquired in 2 healthy volunteers. The acceleration factor was increased from 2x up to 6x, while preserving the original contrast, resolution, and FOV parameters. Data was acquired both with ultrasonic encoding and without, using conventional encoding only. The images were reconstructed using a modified version of the vendor’s SmartSpeed Precise (R12.3) AI reconstruction pipeline, in which PSF-based forward/backward operators were added to model the ultrasonic encoding; the neural network weights were not modified.[6]

The RMS controller produced stable repeated current bursts during the readout, reaching ±400 A peak current (Figure 2). The measured field waveform enabled the PSF reconstruction of the ultrasonic-encoded scans. In the TSE images, conventional high acceleration produced clear aliasing artefacts, while ultrasonic encoding substantially reduced these residuals (Figure 4, left). In FLAIR scans, ultrasonic 4x reconstruction showed reduced noise and acceleration-related artefacts compared with conventional encoding (Figure 4, right). Overall, ultrasonic encoding increased usable acceleration without visibly compromising contrast or anatomy.

The results highlight the strong match between the ultrasonic encoding and AI reconstruction, and the Scan2Go project with its autonomous scanning aim. The seated setup, fixed wide receive coil and 1.5T field strength favour comfort and accessibility, but make highly accelerated imaging more challenging. Ultrasonic encoding adds otherwise unavailable spatial information, while AI reconstruction helps make these accelerated data usable. For this first validation, the TSE and FLAIR scans were reduced to single-slice acquisitions while preserving contrast and geometry. This simplified implementation does not represent a fundamental sequence limitation. Despite this early implementation, ultrasonic encoding already reduced artefacts at high acceleration, and the practical breakdown point has not yet been reached. The present work demonstrates the encoding and reconstruction benefit, rather than a fully quiet whole-sequence implementation. Future work will extend the method to multi-slice and 3D scans, integrate the workflow online, soften conventional gradient waveforms, and apply the approach across the full Scan2Go brain protocol.

Ultrasonic encoding and AI reconstruction enabled high-acceleration 1.5T TSE and FLAIR imaging in Scan2Go. This synergy of novel hardware and software innovations opens up a new class of MR systems designed for faster, more comfortable and more accessible brain imaging.
Thomas ROOS (Utrecht, The Netherlands) , Michael MCGRORY , Edwin VERSTEEG , Cezar ALBORAHAL , Hans HOOGDUIN , Mark GOSSELINK , Bas DE WITTE , Thijs VAN HOOREN , Carel VAN LEEUWEN , Hans VAN DEN BERGE , Andrew KIROLOS , Christien MENSINGA , Martin OOME , Wout SCHUTH , Martino BORGO , Jannie WIJNEN , Jeroen SIERO , Dennis KLOMP
13:54 - 13:57 #54696 - PG106 Preliminary Validation of a 64-Channel Receive Array and a Unipolar Ultrasonic Gradient Insert for Accelerated 3T Brain MRI.
PG106 Preliminary Validation of a 64-Channel Receive Array and a Unipolar Ultrasonic Gradient Insert for Accelerated 3T Brain MRI.

Fast brain MRI at 3T is limited by noise amplification in highly accelerated parallel imaging and by the spatial encoding capability of conventional gradient systems. High-density receive arrays can reduce g-factor by providing better modulation [1]. In parallel, ultrasonic nonlinear gradient encoding combined with a point spread function (PSF) reconstruction framework can provide additional spatial encoding during readout, which reduces the g-factor using inaudible gradient-switching [2].  This work aims to integrate these two acceleration mechanisms into a single 3T brain imaging platform: a 64-channel receive-only RF coil and a unipolar ultrasonic gradient insert. The unipolar design is attractive for head imaging because it produces a single dominant field lobe and may reduce encoding ambiguity from regions outside the brain, such as the neck and shoulders. As a first step toward integrated accelerated imaging, both hardware components were constructed and evaluated separately. 

64-channel Head Coil   64 overlapped [3] loop elements (⌀=8-10 cm) were placed on a 3D printed coil housing  to provide dense spatial sensitivity encoding around the head (Figure 1.a,b). The loop elements were constructed from 1.2 mm silver-coated copper wire to reduce conductive losses. A preamplifier board was mounted directly on each loop element, and preamplifier decoupling was implemented using an on-board circuit.  Unipolar Gradient Insert  The gradient insert, shown in Figure 1.c, was designed as a single-axis, two-layer unipolar z-gradient insert. The wire layout was optimized using simulated annealing to balance gradient efficiency, field linearity, and inductance within the available head-coil space. The target was to generate a near-linear and monotonic field over the brain region while maintaining low field strength below the head to reduce inferior encoding ambiguity. The insert had an inner diameter of approximately 30 cm and a z-length of 20 cm. Hollow copper tubing with a diameter of 6 mm was used to improve current handling and limit heating. The optimized design achieved an average efficiency of 0.227 mT/m/A in the ROI, which is a 16cm area in z direction, with a calculated inductance of 110 μH, matching the measured value. Capacitors were connected to form a resonant circuit for operation close to 20 kHz.  Figure 2 illustrates the proposed platform with a unipolar ultrasonic gradient insert. The RF coil and gradient insert were initially validated separately. Phantom and volunteer scans with informed consent were performed on a 3T MRI system (Ingenia CX, Philips, Best, NL) with the 64-channel receive array to confirm signal reception and image acquisition. In a separate phantom experiment, the magnetic field generated by the unipolar ultrasonic gradient insert was measured and compared with the simulated field.

Preliminary SENSE-accelerated images obtained by the 64-channel receive-only RF coil demonstrated in Figure 3. The coil geometry also allowed reception from the neck and shoulder regions, which is relevant for evaluating aliasing outside the brain.  Phantom images were also acquired using the unipolar ultrasonic gradient insert. The measured field distribution was consistent with the simulated field, supporting the validity of the gradient design (Fig. 4). These results validate the two key hardware components, gradient and RF receive coil, of the proposed acceleration platform. 

The current results support the feasibility of a dual-encoding approach for accelerated 3T brain MRI. The 64-channel receive array provides high-density sensitivity encoding, while the unipolar ultrasonic gradient insert is designed to provide complementary nonlinear encoding in z direction, reduce audible gradient noise, improve the acceleration performance and decrease the aliasing from inferior regions. [2]. The asymmetric gradient field distribution may also be beneficial for reducing PNS below the head, although this requires further validation.  The main limitation is that the RF coil and gradient insert have only been tested separately. Therefore, this study should be interpreted as preliminary hardware validation rather than a full demonstration of integrated accelerated imaging. Future work will focus on simultaneous operation, measurement of gradient–RF interactions, and PSF reconstruction using measured coil sensitivities, nonlinear gradient fields, and ultrasonic waveforms.

We present a preliminary validation of a 64-channel receive RF coil and a unipolar ultrasonic gradient insert for accelerated 3T brain MRI. These results establish the basis for a high SNR, low-noise platform for accelerated brain imaging at 3T.
Kaiqi MENG (Amsterdam, The Netherlands) , Edwin VERSTEEG , Busra KAHRAMAN , Mark GOSSELINK , Dennis KLOMP
13:57 - 14:00 #54610 - PG107 Dynamic higher-order shims for a unipolar head gradient: design, characterization, and MIMO pre-emphasis.
PG107 Dynamic higher-order shims for a unipolar head gradient: design, characterization, and MIMO pre-emphasis.

High-performance head gradients [1-6] and ultra-high field [7-9] pave the way for studying the human brain with unprecedented encoding efficiency and SNR. However, one potential issue with head gradients is encoding ambiguity, which may give rise to backfolding from the neck and chest as increasing Larmor frequencies cause RF fields to be less localized. As one solution, unipolar z-gradients have been proposed, achieving high performance (Gmax = 200 mT/m, SRmax = 560 mT/m/ms) along with elimination of backfolding in a 7T implementation.[6] A key remaining issue in this scenario is field fidelity, which is impaired by static and dynamic susceptibility effects as well as eddy currents and vibration.[10] These problems call for dynamic higher-order shimming,[11-15] enabling correction, e.g., by per-slice shimming [11-13] or feedback field control.[16] Dynamic actuation of shim coils will itself drive eddy currents in nearby structures. Head gradients offer an opportunity in this regard by placing shim coils at good distances from the cryostat, limiting long-lived eddy currents of this sort. This work explores the feasibility of a full third-order shim set integrated with a unipolar head gradient system at 7T.[6] Shim coils are designed subject to the complex spatial and coupling constraints imposed by strong asymmetry of the flanged and unipolar (z) gradient coils. The shim system is characterized via the shim impulse response function (SIRF) and its associated frequency-domain transfer function.[17] Correction of higher-order eddy current and vibration effects is achieved by multiple-input multiple-output (MIMO) pre-emphasis.[14]

Shim coil design: The resistive shim coils are located in the space between the main gradient windings and the gradient’s active shield (Figure 1A). The rendered shim conductor layouts are shown in Figure 1B. The shim coils are cooled indirectly by the water-cooled gradient windings. To inductively decouple the shims from the asymmetric gradient coils and to account for limited axial extent of the shims due to the conical shoulder section of the gradient, six of the shim coils were made asymmetric along the z-direction. To achieve zero mutual inductance, these six shim coils also generate significant linear terms to be compensated for by concurrent gradient shimming. Figure 2 lists the achievable shim field strengths, along with information about their inductance, generated linear gradients, z-asymmetry, and active shielding. Dynamic shim actuation and measurement: The full assembly of the shim system and the underlying unipolar head gradient is mounted in a Philips 7T Achieva system.[6] To drive zeroth-, second-, and third-order shim coils, a custom-built chain based on 16-bit digital-to-analog converters (National Instruments) was connected to the analog inputs of the shim amplifiers[14] and controlled by an external PC. A frequency sweep pulse [17] was successively input to each shim amplifier, with TR = 3000 ms and five repetitions. Resulting field dynamics up to third spatial order [18] were monitored using a 1H NMR field camera [19] (Skope MRT) for computing the shim transfer functions. To demonstrate the feasibility of pre-emphasis, measurements were repeated with MIMO pre-emphasis of the nominal frequency sweeps, targeting flat transfer behaviors up to 5 kHz.[14]

Figure 3 compares the self-term shim transfer functions of the head gradient system and that of body shims of the same 7T system. The head gradient system shows substantially reduced impacts from both short- and long-lived eddy currents, as well as vibration-induced effects. In particular, its shims have higher self-term transfer function magnitudes than body shims, with the absence of the 0 Hz peaks. Figure 4 shows transfer functions of three selected shims, derived from frequency sweeps with and without MIMO pre-emphasis. Transfer functions with pre-emphasis confirm successful removal of imperfections in system haviour.

The smaller radius of a head system greatly benefits the transfer behavior of the shim coils compared to whole-body shims. Greater distance from the cryostat has effectively eliminated long-lived shim eddy currents.[17] Short-lived shim eddy currents in warm structures, particularly the gradient and other shim coils, are also shown to be benign and readily amenable to MIMO pre-emphasis.[14] The decreasing transfer function magnitudes with increasing frequency rather than expected plateaus after pre-emphasis likely stems from the non-linearity of the shim amplifiers.

According to this study, it is feasible to reconcile unipolar high-performance gradients with efficient, dynamic higher-order shimming at high field. This is a promising finding for cutting-edge neuroimaging, which calls for better field fidelity along with sensitivity, speed, and the avoidance of ambiguity. Besides per-slice shimming, dynamic shimming capability holds promise, e.g., for run-time shim update along with motion correction.[20]
Runpu HAO , Johan OVERWEG , Markus WEIGER , Franciszek HENNEL , Roger LUECHINGER , Wout SCHUTH , Martino BORGO , Klaas Paul PRUESSMANN (Zurich, Switzerland)
14:00 - 14:03 #54454 - PG108 An optimized boundary-element method for the design of cylindrical gradient coils with compensation for flux-concentration effects in a 68 mT permanent-magnet MRI system.
PG108 An optimized boundary-element method for the design of cylindrical gradient coils with compensation for flux-concentration effects in a 68 mT permanent-magnet MRI system.

Ultralow-field (≤100 mT) permanent-magnet magnetic resonance imaging (MRI) systems feature low cost, compact structure, and high portability, making them promising for portable medical imaging. As the core component for spatial encoding, the performance of the gradient coil greatly affects image distortion, spatial resolution, and power consumption through its field linearity and current efficiency [1–4]. Although planar gradient coils are simple to fabricate, they are susceptible to electromagnetic coupling with nearby ferromagnetic pole plates and conductive structures in permanent-magnet systems, which results in unavoidable eddy currents and remanence during rapid spatial encoding processing, leading to field distortion and imaging artifacts [5, 6]. Cylindrical gradient coils, whose geometrical boundaries are far away from the permanent magnet, provide a more symmetric current distribution and can help reduce eddy-current-related effects and remanence in magnets. Even though a lot of work have been carried out to design cylindrical gradient coils with , the effect of magnetic material distribution are generally ignored, and conventional free-space boundary element methods cannot accurately capture ferromagnetic boundary effects.Given that, an image-current-corrected boundary-element method is proposed to design cylindrical gradient coils by taking ferromagnetic boundary coupling into account.

A boundary-element optimization model for cylindrical gradient coils considering ferromagnetic boundary coupling was established. The cylindrical surface was discretized using triangular meshes, and the surface current was represented by nodal stream functions [7, 8]. Based on the Biot–Savart law, a sensitivity matrix relating the stream function to the magnetic field in the target region was constructed [9]. An image-current model was then introduced in the cylindrical coordinate system, and the equivalent magnetic-field contribution from the ferromagnetic boundary was incorporated into the sensitivity matrix using the image-current method. Thus, both the actual coil current and the ferromagnetic-boundary coupling effect were included. The optimal stream-function distribution was solved by minimizing the gradient-field error and controlling power consumption [10–12], obtaining discrete wire layout. To determine a suitable cylindrical coil configuration in a space-constrained permanent-magnet MRI systems, key geometric parameters, including the coil aspect ratio, were parametrically analyzed. Their effects on gradient linearity, current efficiency, and power consumption were evaluated. Finally, a finite-element model was built to validate the magnetic-field distribution and optimization results.

The results show that the geometric dimensions of the cylindrical gradient coil strongly affect gradient performance. Optimizing the aspect ratio enables a favorable trade-off among gradient linearity, current efficiency, and power consumption. Compared with the conventional free-space boundary-element design, the image-current correction effectively compensates for the gradient-field distortion caused by ferromagnetic boundaries, reducing the gradient nonlinearity in the target region to below 5%. The boundary-element results agree well with the finite-element simulations, indicating that the proposed model can accurately characterize the gradient-field distribution under ferromagnetic boundary coupling.

The proposed image-current-corrected boundary element method incorporates ferromagnetic boundary coupling directly into the sensitivity matrix, enabling design-stage compensation of gradient-field distortion. Compared with the conventional free-space method, it more accurately captures the influence of magnetic material distribution on the gradient field and better reflects practical engineering conditions. The parametric analysis also shows that, although cylindrical gradient coils can alleviate eddy-current-related effects, gradient linearity, current efficiency, and power consumption still require careful trade-offs under limited space. The proposed method provides an effective approach for cylindrical gradient coil design in permanent-magnet MRI systems with magnetic boundary effects.

This study proposes a boundary-element optimization method for cylindrical gradient coils in ultralow-field permanent-magnet MRI systems considering ferromagnetic boundary coupling. By introducing an image-current model and correcting the sensitivity matrix, ferromagnetic boundary effects are compensated at the design stage. Combined with parametric optimization, a cylindrical coil structure balancing gradient linearity, current efficiency, and power consumption is obtained. Finite-element simulations verify the effectiveness of the proposed method, providing a useful approach for the design of gradient coil in ultralow-field permanent-magnet MRI system.
Xin SHUMIN (Xi'an, China) , Sun JIAJIA , Wang RUICHEN , Shi ZONGQIAN
14:03 - 14:06 #54569 - PG109 A low-cost field cycling MRI system with inhomogeneous B0 and nonlinear gradients for accessible MRI.
PG109 A low-cost field cycling MRI system with inhomogeneous B0 and nonlinear gradients for accessible MRI.

A low-cost electromagnet, with a unique combination of nonlinear spatial encoding gradients, and RF arrays is presented that produces diagnostic quality MR images. An open-source console is included and the front end of this system is based on PulseSeq for compatibility with the MR community. Field cycling is used in this context to polarize the spins at high field while read-out is performed at low-field. Demonstrating imaging with a nonuniform B0 magnet opens up the possibilities of custom magnet designs for specific anatomic applications. The open magnet design presented here is well suited for applications in breast screening, assessing fatty liver disease, prostate imaging and weighted spin imaging1. Just as the manufacturers today build RF systems for specific clinical applications the approach we are developing builds both magnet and RF systems for specific clinical applications. A single set of amplifiers and an in-house built console can work with different magnet and RF configurations.

A strong power amplifier (Performance Controls) produces 275Amps and 1000volts for driving the electromagnet which is wound with hollow-wire copper conductors (Tesla Inc., UK), yielding a maximum polarization field of 0.5 Tesla. The hollow-wire allows efficient cooling of the magnet in this field cycling context. The nonuniform B0 is used as the main magnet as well as the z-slice selection gradient (and it can be used for imposing diffusion weighting). Polarizing the spins at relatively high field yields excellent signal (compared to many low-field devices currently in development) while the inhomogeneities in this polarization field has little effect on imaging. After approximately 2 seconds of polarization the field is dropped rapidly (in less than 40ms) and imaging is performed. The field is adjusted such that the imaging volume of interest is scanned. To do this current in the main B0 magnet is adjusted to move the read-out field of 24mT, (1MHz) through the scan volume with each slice having a manageable 15KHz residual inhomogeneity during data acquisition. Imaging is performed with a range of pulse sequences chiefly based on turbo-spin echo imaging. Field cycling can also be used for generating novel contrasts as well as imposing diffusion weighting. Additional sensors are included to measure EMI and noise cancellation approaches are implemented such that imaging can take place without the need for an RF and magnetically shielded room.

The electromagnet is shown in Figure 1 and phantom images obtained using a breast coil are shown in figures 2 and 3. Images of various fruits are shown in figure 4 demonstrating the early capabilities of this system. Algebraic image reconstruction is used with priors including the phasors produced by the nonlinear gradients, using a vector formulation that also takes into account the variable directions of both gradients and B0 as one traverses the volume of interest. While the specific nonlinear shapes of the B0 and spatial encoding gradients can be somewhat arbitrary, it is important for artifact free reconstruction that they be mapped accurately in order to generate the correct phasors for image reconstruction. This only needs to be done once and then the particulars of specific pulse sequences and timing can be adapted to incorporate these field effects.

Field cycling is typically an inefficient approach to imaging because ~2 seconds of polarization are needed every TR in order to rebuild the magnetization. However the low RF power needed for 180 degree RF pulses increases the efficiency of a multi-echo approach since many echoes can be obtained with the long-T2s encountered at low-field and the short RF pulse durations allowing for very short echo spacings. This compensates for the inefficiency of waiting for polarization each cycle. Efficiency can be further improved by using driven-equilibrium approaches to further reduce the polarization time. While MRI is the best imaging modality for a number of clinical applications it is not widely available in the West and is not available at all in emerging economies. Early detection of clinical problems could be enhanced with accessible MRI – particularly for example in breast cancer screening applications – which one of our first targets for this work. Developments in noise sensing and removal (EMI cancellation approaches), pulse sequences, and reconstruction approaches – including AI in many of these steps – now make imaging at low fields feasible and yield diagnostic quality images.

We demonstrate high quality imaging is possible using a nonuniform field cycling magnet in an unshielded room. This approach to MRI makes it feasible to build and site low-cost MRI for a range of anatomies and anatomic-specific clinical applications.
Todd CONSTABLE (New Haven, USA) , Yonghyun HA , Chenhao SUN , Flor PARRA , Anja SAMARDZIJA , Sebastian THEILENBERG , Sajad HOSSEINNEZHADIAN , Charles ZHANG , Tao Tl LI , Heng SUN , William DENTON , Guang YANG , Gigi GALIANA
14:06 - 14:09 #54155 - PG110 Fast, robust, and simultaneous B0 and B1 mapping in highly inhomogeneous Halbach systems.
PG110 Fast, robust, and simultaneous B0 and B1 mapping in highly inhomogeneous Halbach systems.

Halbach arrays have emerged as an effective solution for generating low-field (<100 mT) magnets for MRI devices, offering portability, reduced weight, and cost-effectiveness [1,2]. However, these advantages often come at the cost of severe B0 inhomogeneities (>1000 ppm), which produce substantial geometric distortions when conventional reconstruction methods are used. To overcome this limitation, model-based reconstruction methods incorporating prior field information into the encoding matrix become useful. However, standard B0-mapping techniques based on TE-shifted GRE sequences [3] fail under highly inhomogeneous conditions. In this work, we present an extension of Single-Point Double-Shot (SPDS, [4]) sequence, which enables robust, rapid, and simultaneous B0 and B1 mapping over large FOVs (25 cm3) in <5 min. The resulting field information can then be incorporated into model-based reconstruction frameworks as ART [5], enabling distortion-corrected imaging under challenging field conditions, independently of the k-space trajectory employed by the imaging sequence.

We adopted the strategy proposed in [4], extending it to simultaneously obtain B0(r) and B1(r) maps. A schematic of the precalibration, acquisition, and subsequent data-pipeline is shown in Fig. 1. Briefly, SPDS acquires three fast, low-resolution SPRITE [6] sequences operating in incoherent steady-state regime (TR
Fig. 2a,b show slices of η(r) and B0(r) maps acquired in 3.2 min using RF-1. Fig. 3a,b show slices of η(r) and B0(r) maps acquired in 5.4 min using RF-2. Fig. 4 shows slices from a T1-w RARE brain acquisition reconstructed using FFT (middle) and ART (bottom), incorporating prior B0 information estimated with SPDS. The corresponding B0 maps were spatially regularized by fitting the raw field measurements with a 6th-order polynomial model (top).

Results in Fig. 2 and 3 prove that extended SPDS sequence enables simultaneous B0 and B1 mapping even in highly inhomogeneous fields, thereby decoupling the mixed effects of B0 and B1 inhomogeneities on their respective maps. On one hand, B1 inhomogeneity introduces a common intensity modulation across the three images; however, this does not affect the B0 estimation, since the latter relies exclusively on the phase of FFT-images. On the other hand, B0 inhomogeneity can induce geometric distortions that would otherwise deform the maps but SPRITE sequences with Td<500 µs ensures robustness against such effects. As shown, once B0(r) and η(r) maps have been estimated with SPDS, a certain B1nom strength field can be assumed and more useful information can be derived as a) the B1(r) field distribution, b) the magnitude of effective field (Beff), c) the x' and z' components of Beff field in rotating frame and d) spin-tilt angle from y'z' plane, thus enabling a useful tool to analyze the spin-excitation imperfections in a particular setup.

Extended SPDS enables rapid B0 and B1 mapping even in highly inhomogeneous scanners without suffer from geometric distortions or SNR penalties even at very low field.
Borreguero Morata JOSE , Moreno PABLO , Fernández García MARINA , Vega Cid LORENA , Castanón García-Roves ELISA , Algarín Guisado JOSE MIGUEL , Galve Conde FERNANDO , Alonso Otamendi JOSEBA (Valencia, Spain)
14:09 - 14:12 #53356 - PG111 External Hall-Sensor-Guided Larmor Frequency Calibration in Low-Field MRI with Local Spectral Refinement.
PG111 External Hall-Sensor-Guided Larmor Frequency Calibration in Low-Field MRI with Local Spectral Refinement.

Permanent-magnet low-field MRI enables compact and comparatively low-cost scanner designs and is therefore increasingly relevant for accessible and portable imaging concepts [1,2]. Robust operation, however, remains challenging because the static field B0 is sensitive to thermal drift, the low operating frequency increases the relative impact of spectral and off-resonance effects [3]. In the employed 47 mT Halbach system [4], corresponding to a proton Larmor frequency near 2 MHz, a naive global peak search can lock onto electromagnetic interference peaks rather than the true resonance, as illustrated in Figure 1. A fixed narrow search window is also insufficient. During long acquisitions, thermal drift can shift the bore resonance by several kilohertz, potentially moving the resonance away from the initially tuned RF-coil and receive- chain operating point. In representative measurements across a 20 cm FOV, the observed Larmor-frequency drift was on the order of 2.5 kHz/°C to 3.6 kHz/°C, with an average of approximately 3.2 kHz/°C, as shown in Figure 2. The solution provides an automated tracking workflow that uses an external Hall-sensor board to estimate the current magnetic-field drift and constrain the admissible Larmor-frequency search and calibration range during acquisition, without interrupting the running sequence.

A single external Hall-sensor board with 32 TLV493D 3D Hall sensors (Figure 3) was mounted on top of the Halbach magnet over the axiale FOV coverage of 20 cm. The outside board monitors temperature introduced stray- field changes without obstructing the imaging bore. For the present workflow, only the measured magneticfield drift was used. The temperature was not used as an input feature, it is treated as the physical origin of the drift rather than as a direct calibration observable. The Hall-sensor measurements were calibrated and averaged to improve robustness. Measurements are captured with a 1 Hz update rate. A regression model was trained to relate the external stray-field change to the expected in-bore field shift relevant for Larmor-frequency calibration. During operation, the estimated field drift is used as a dynamic prior that re-centers the admissible RF search interval. Within this confined interval, local Lorentzian fitting is applied to the center estimate of the spectral peak. The workflow was implemented and is executed during the imaging sequence, and can trigger a frequency adjustment or automatic coil retuning.

Using an external Hall-sensor-guided prior corresponding to a 30 μT field prediction uncertainty restricted the search to ±1 kHz around the expected resonance. Within this confined interval, local Lorentzian fitting recovered the true resonance with a residual error of −2.1 Hz. These results show that robustness is primarily achieved by a two-stage procedure (Figure 4). External magnetic field monitoring is first used to define a physically plausible search interval for the expected resonance. A Larmor frequency sweep is then carried out within this confined interval to obtain the precise resonance frequency. Accordingly, the proposed method constitutes a fully automated calibration process in which external field information is used to guide, rather than replace, the final spectral determination of the Larmor frequency.

The main contribution of the proposed workflow is a practical calibration and tracking strategy for low-field MRI. Instead of relying on blind global spectral maximization, the resonance search is first constrained by external Hall-sensor information and then refined locally using the MR signal. The Hall-sensor estimate should therefore be interpreted as a dynamic search prior for resonance localization rather than as a direct replacement for MR-based frequency refinement. The approach is less intrusive than probe-based in-bore field monitoring [5] and technically simpler than full field-lock implementations [6]. It addresses an operational problem characteristic of low-field permanent-magnet MRI systems: resonance uncertainty under thermal drift, temporal field variation, and disturbed spectra [3,4]. Because the sensors are external to the imaging volume, the method does not interfere with the MRI sequence, RF chain, or subject space. In future work, the same non-invasive sensing concept could be extended from global bore-field drift tracking to real-time prediction of the full three-dimensional field drift across the FOV during acquisitions.

An external Hall-sensor-guided Larmorfrequency calibration workflow for low-field MRI was implemented that combines dynamic search confinement with local spectral refinement, without requiring additional hardware inside the bore and operated autonomously during sequences. The approach improves robustness against disturbed thermally shifted resonance conditions by reducing the search to a plausible frequency interval before sequence execution and enables a fully automated tuning calibration procedure and provides a real-time field drift information.
Marcel OCHSENDORF (Aachen, Germany, Germany) , Lukas BIERBÜSSE , Kostiantyn LAVRONENKO , Marian FREI , Felix DAHMS , Emilia YIN-GROßMANN , Yannick KUHL , Volkmar SCHULZ
14:12 - 14:15 #54287 - PG112 Ultra-low-field MR-scanner for online MR-guided ion-beam therapy: Technical feasibility of integration into an ion-beam therapy environment.
PG112 Ultra-low-field MR-scanner for online MR-guided ion-beam therapy: Technical feasibility of integration into an ion-beam therapy environment.

MR-guided ion-beam therapy by combining an MR-Scanner and the radiotherapy treatment unit is the focus of intense research and could be beneficial for optimizing irradiation accuracy [1]. However, MR imaging performance can be affected by Electromagnetic Interference (EMI) as well as stray magnetic fields originating from beam delivery components, scanning magnets and other devices, requiring extensive shielding and mitigation strategies to avoid image degradation or artifacts. To explore the feasibility of ultra-low-field (ULF) MRI in an ion beam therapy center we positioned an ULF-MR-scanner in an unmodified treatment room and investigated the potential impacts of surrounding RF and magnetic field noise on the imaging performance. In a second step the deflection of the ion beam by the main magnetic field B0 was studied.

An ULF MR scanner, based on the design for the OSI² ONE system [2] was built at the Graz University of Technology and transported to the MedAustron ion-therapy center (Wr. Neustadt, Austria). The research room is equipped with a horizontal beam line for scanned ion-beam delivery. Its medical nozzle can deliver protons and carbon ions in the clinical energy range of 62-253 MeV and 120-403 MeV/u, respectively. The ULF-MRI system was positioned in the irradiation room so that the isocenters of the MR magnet and the beamline were matched exactly (fig. 1). EMI: EMI effects in the irradiation room were investigated by imaging an EMI phantom which comprised a pineapple for good T1-contrast. The latter was electrically connected to a large aluminum foil wrapped around a prismatic plastic body outside the scanner for mimicking capacitive EMI pickup by a human body. Connection was achieved via a short cable and a copper needle inserted into the pineapple. Environmental EMI was quantified by recording signal spectra over a 50 kHz bandwidth without any MRI sequence and compared to a 50 Ω baseline while the RF chain was terminated with a 50 Ω resistor instead of the RF coil. The ratio between the two respective RMS noise voltages was tabulated as noise factor (Nf). 3D RARE images of the pineapple phantom were acquired applying different methods for EMI mitigation (phantom grounding [3] via aluminum foil, RF coil shielding as in [4]). Geometric distorsions: Imaging of a grid phantom located at the MR center was performed with and without (reference) ongoing beam delivery. The difference between the reference and active beam configurations was visualized by computing the absolute difference of the magnitude images. Additionally, a difference image was created from two subsequent reference measurements without beam delivery to show variations of the MR system between normal acquisitions. The ion beam deflection was investigated using a Lynx scintillation detector (IBA Dosimetry, Schwarzenbruck, Germany) creating a five spot map with a central spot and four spots at the outer corners of the used field. Spot positions were evaluated for 3 proton energies with and without the ULF-MR scanner in position, respectively.

Electromagnetic interference measurements in the treatment room revealed considerable presence of EMI. Grounding and subsequent additional shielding measured restored noise levels from NF = 11.96 to 2.76 and 1.09 (near baseline), respectively. The image quality improved accordingly (fig. 2). Image quality achieved in the irradiation room without beam delivery was comparable to laboratory conditions and no beam- or scanning magnet-induced artifacts were observed for protons nor for carbon ions (see fig. 3). The difference between two reference images without beam delivery (fig. 3, row a) is partially larger than the difference between reference and image with active scanning magnets or beam. Tab. 1 shows the beam deflections when evaluating the spot positions in the five spot map of the Lynx detector. Lateral spot displacements 50 cm behind the isocenter ranged from 13.6 to 6.3 mm, depending on the energy, corresponding to calculated deviations between 2.1 and 0.9 mm in the isocenter.

Stable image quality can be achieved with an ULF-MRI system in an unshielded ion-beam therapy environment when appropriate EMI mitigation strategies are applied. Despite substantial environmental electromagnetic interference, grounding and local shielding reduced noise levels to near baseline, enabling reliable image acquisition. Difference images showed that deviations between measurements without beam delivery were larger than observable effects from scanning magnets or beam. As expected the B0 field of the ULF-MRI system induced measurable beam deflections. However, at the treatment isocenter, spot offsets were considerably smaller compared to higher field prototypes [5], which might allow the use of less advanced compensation methods.

To our knowledge, for the first time an ULF MR scanner was successfully operated in an ion therapy research room without additional shielding and without compromising image quality.
Hermann SCHARFETTER (Graz, Austria) , Julia PFITZER , Panagiotis ANTYPAS , Dietmar GEORG , Martin UECKER , Hermann FUCHS
14:15 - 15:00 Visit posters PG098-PG112.
Sala de Cambra

"Friday 02 October"

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C23
13:30 - 15:00

FT3-5 - AI-Assisted MRI Pulse Sequence
Design & Image Reconstruction

FT Machines
13:30 - 14:00 Learning to Excite: AI-Driven MRI Pulse Sequence Design. Jessica Am BASTIAANSEN (Associate Professor) (Keynote Speaker, Bern, Switzerland)
14:00 - 14:30 Excited?! AI-Driven MRI Reconstruction from Spins to Images. Florian KNOLL (Professor) (Keynote Speaker, Erlangen, Germany)
14:30 - 15:00 AI as a Coding Partner in MRI: Rethinking MRI Software Development. Patrick SCHUENKE (MR Sequence Developer) (Keynote Speaker, Ulm, Germany)
Sala Petita

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D23
13:30 - 15:00

LTD2-2 Scientific session
Preclinical MRI: Functional, Microstructural and Molecular Signatures

13:30 - 13:33 #54153 - PG163 First fMRI in parrots at 17.2 T: hardware, methods and somatosensory mapping.
PG163 First fMRI in parrots at 17.2 T: hardware, methods and somatosensory mapping.

Parrots represent a uniquely valuable model for cognitive and behavioral neuroscience due to their high cognitive capacity including vocal learning and complex object manipulation [1, 2]. However, in vivo neuroimaging in birds poses exceptional technical challenges: avian skulls contain extensive air-filled cavities causing severe susceptibility artefacts, particularly at ultra-high field. Furthermore, the rapid metabolism of parrots renders standard small-animal anesthesia protocols inadequate. Here we describe a comprehensive methodological framework spanning RF hardware, sequence optimization, animal handling and anesthesia, enabling robust BOLD fMRI in parrots at 17.2 T.

12 green-cheeked conures (Pyrrhura molinae) were used in this study: 8 for fMRI experiments and 4 for ex vivo brain template construction. Birds were scanned on a 17.2 T horizontal bore animal scanner (Bruker BioSpin, Ettlingen, Gemany) using a custom helmet-shaped 2-channel transmit/receive RF coil tailored to parrot cranial geometry (RAPID Biomedical, Rimpar, Germany) (Figs. 1A, 1B). A dedicated cradle was custom-built incorporating circulating warm water for temperature regulation throughout the session [3]. Head fixation was achieved using a custom mask, with foam padding around the ears providing both acoustic attenuation and stability (Fig. 1C). Single-shot EPI was found unusable at 17.2 T due to severe signal dropout from avian cranial air cavities, a challenge previously identified in pigeons at lower field strengths [4], and a 2-segment EPI readout was implemented and optimized (TR/TE = 1000/7 ms, in-plane resolution = 0.25 mm, slice thickness = 0.5 mm, 19 slices, BW = 333 kHz). Combined with slice-by-slice dynamic shimming, this allowed us to achieve coverage of the main telencephalic regions of interest with adequate B0 homogeneity. Anesthesia was induced with isoflurane, after which a mixture of midazolam (2 mg/kg) and butorphanol (2 mg/kg) was administered intramuscularly; isoflurane was then reduced and maintained at 0.5% for the duration of the session (~90 min). Respiration and temperature were monitored continuously, the latter via an under-wing probe. A parrot brain template was constructed from ex vivo MRI data acquired at 0.1 mm isotropic resolution and used as a common registration target for functional data (Fig. 2). Somatosensory activation was elicited by electrical stimulation of the left foot consisting in a block design paradigm (30 s OFF / 30 s ON, repeated 6 times). The current intensity ranged from 0.5 to 1.5 mA. Three to four functional scans were acquired per animal. Data preprocessing included motion correction, susceptibility distortion correction, slice-time correction and registration to the parrot brain template. Activation was assessed using a GLM with a boxcar regressor with the hemodynamic delay optimized via a voxel-wise grid search maximizing the statistical fit to the observed signal.

The custom RF coil and 2-segment EPI protocol yielded consistent image quality across the parrot brain, with adequate signal-to-noise ratio and brain coverage, and the combined anesthesia protocol maintained stable respiratory rate (25 - 45 bpm) throughout the imaging session. Representative functional (EPI) and T2*- weighted anatomical (FLASH) images are shown in Fig. 3. Optimization of the hemodynamic delay via grid search yielded an optimal value between 5 and 6 seconds. The strongest BOLD responses were obtained at 0.8 and 1 mA. 0.8 mA (Fig. 4A) stimulation resulted in more restricted activated areas than 1 mA (Fig. 4B). In general, the activation was predominantly right-lateralized, and localized to the nidopallium (avian dorsal telencephalon), where thalamorecipient areas of other sensory modalities such as vision (entopallium) and audition (field L) are also located (Fig. 4). Our results suggest that the sensory representation of the foot in parrots may be located caudal to the beak representation (nucleus basalis).

Birds present a uniquely demanding combination of challenges for ultra-high field fMRI: severe susceptibility artefacts from cranial air cavities, rapid metabolism complicating anesthesia, and head morphology different from common mammalian models. The low isoflurane maintenance level enabled by midazolam/butorphanol supplementation is particularly relevant for BOLD sensitivity, given the known suppressive effect of high isoflurane concentrations on neurovascular coupling [5]. The integrated framework presented here (multi-segment EPI, dynamic shimming, dedicated coil and positioning hardware, and adapted anesthesia) is directly transferable to other avian species.

We present the first dedicated fMRI methodology for parrots at 17.2 T. The successful detection of reliable somatosensory BOLD responses across multiple animals validates the complete pipeline and establishes a replicable platform for investigating higher cognitive functions in this neuro-scientifically important species.
Théo DURIER , Georges EL KALACHE , Pierre LABOURÉ-SANTAVICCA , Glatigny MELISSA , Kei YAMAMOTO , Luisa CIOBANU (Paris)
13:33 - 13:36 #54270 - PG164 Striatum shows functional resilience despite increased amyloid burden after cognitive stimulation in TgF344-AD rats.
PG164 Striatum shows functional resilience despite increased amyloid burden after cognitive stimulation in TgF344-AD rats.

Cognitive Reserve (CR) is an adaptive brain mechanism to maintain cognition and function in a disease context [1]. The striatum integrates afferent information from multiple cortical and subcortical regions [2, 3]. Its role was initially related to motor control, but it also contributes to reward processing, motivation, decision making, learning and memory [3, 4]. In Alzheimer’s Disease (AD), the striatum’s β-amyloid (βA) plaque deposition starts in middle stages of AD’s progression [5] and, due to its association to motor control, its role in AD has been overlooked. Hence, we set out to study if Cognitive Stimulation (CS) affects striatal connectivity and if this represents a mechanism of CR on 19-months-old (mo) TgF-344AD rats (TG).

A total of 44 rats (22 TG, 22 WT), sex balanced, were assigned to a CS procedure by means of repetitive Delay Non-Match to Sample task: Untrained rats (UT) did not receive any CS, Early Trained (ET) started CS at 3mo and Late Trained (LT) at 11mo, each periodically repeating the protocol 10 days every 4 months until 19mo. Resting-state fMRI (rsfMRI) was acquired on a Bruker BioSpec 7T using single-shot gradient-echo EPI (TR/TE=2000/28 ms, 600 volumes, 0.4×0.4×0.6 mm³), with T2-weighted anatomical images also acquired for registration (RARE sequence, effective TE=35.3 ms, TR=6000 ms, voxel size=0.12×0.12 mm², 40 slices, slice thickness=0.8 mm, and FoV=30×30×32 mm³). Functional and anatomical images were denoised, bias-corrected, and skull-stripped. A group T2 template was generated with ANTs [6], and the SIGMA atlas [7] was nonlinearly registered to propagate labels into each subject’s native rsfMRI space using nearest-neighbour interpolation. Seed-based functional connectivity was computed from left dorsomedial (DMS), dorsolateral (DLS), and ventral striatal (VS) seeds on preprocessed rsfMRI data (detrended, standardized, band-pass filtered 0.01–0.1 Hz; 1 mm smoothing). Seed-to-voxel Pearson correlation maps were Fisher-z transformed, and group comparisons were performed with FSL randomise using two-sample designs, TFCE correction, and 5000 permutations. Animals were perfused (PBS and 4% PFA) to obtain brain tissue. One hemisphere was coronally cut into 6 slices, mounted on paraffin blocks and cut (5 μm). βA quantification was performed with β4 antibody immunostaining. The other hemisphere was dissected and frozen. Striatums were homogenised following an adaptation from Thacker et al [8]. Western blot was conducted to analyse changes in the expression of proteins related to synaptic plasticity and inflammation.

ICA identified a striatal resting-state network whose mean connectivity strength was significantly reduced in TG UT rats and remained impaired after late CS in TG LT rats. In contrast, rats that received early CS showed preserved striatal network z-scores comparable to WT controls. SBA revealed subregion-specific alterations in striatal connectivity (Figure 1). In TG UT rats, both DMS and DLS seeds showed reduced connectivity with the contralateral striatum and limited cortical compensatory hyperconnectivity. Early CS attenuated these deficits and induced focal hyperconnectivity in prefrontal, motor and sensory cortical regions and hippocampus, indicating preserved network plasticity. In contrast, late CS did not produce any normalisation. βA plaque counting revealed that ET rats had significantly higher number of plaques when compared to UT (DLS p<0.01) and LT TG rats (DMS, DLS p<0.05). A similar tendency was observed in the VS. Striatal βA burden was significantly correlated with striatal component strength, suggesting that early CS promotes functional resilience despite increased βA burden. Protein expression analyses showed that CS partially restored the levels of inflammation-related proteins in TG rats.

Our findings identify the striatum as a key neural substrate of CR in AD, extending its role beyond motor and reward processing to the preservation of memory-related network function. Early CS maintained striatal functional connectivity and also preserved NOR performance [9], supporting the contribution of corticostriatal circuits to adaptive CR mechanisms. Notably, these beneficial effects occurred despite increased βA deposition, decoupling neuropathological burden and functional network integrity, which suggests that non-pharmacological interventions may enhance CR by sustaining network efficiency rather than reducing neuropathological load. Late CS elicited limited effects, indicating that CS is most effective when engaged in early stages of disease progression, highlighting an important therapeutic window in AD.

Early CS preserved striatal functional connectivity in TG rats despite an increased βA burden, showing a partial dissociation between molecular neuropathology and brain network dysfunction. Altogether, these findings identify the striatum as a region implicated in CR and support MRI connectivity as a sensitive biomarker of compensatory network preservation.
Enric ABELLÍ-DEULOFEU (Barcelona, Spain) , Federico VARRIANO , Daniel MAYANS , Lia RODRÍGUEZ , Clara GARCÍA-GONZÁLEZ , Julia CASANOVA-PAGOLA , Yue HENG , Xavier LÓPEZ-GIL , Raúl TUDELA , Emma MUÑOZ-MORENO , Alberto PRATS-GALINO , Mercè MASANA , Manuel J. RODRÍGUEZ , Guadalupe SORIA
13:36 - 13:39 #54429 - PG165 Resting-state fMRI spectral abnormalities in Alzheimer’s disease are altered by transcranial pulse stimulation.
PG165 Resting-state fMRI spectral abnormalities in Alzheimer’s disease are altered by transcranial pulse stimulation.

Large-scale network dysfunction is increasingly recognized as a core feature of Alzheimer’s disease (AD), extending beyond local amyloid-β and tau pathology to involve altered functional connectivity (FC) and disrupted spontaneous brain dynamics [1, 2]. Frequency-resolved resting-state fMRI (rs-fMRI) may provide a sensitive framework for detecting these circuit-level abnormalities and monitoring treatment responses [3]. Transcranial pulse stimulation (TPS) is a non-invasive acoustic neuromodulation approach with potential to modulate both superficial and deep brain circuits [4, 5]. Here, we investigated whether TPS modulates AD-related circuit abnormalities in 3×Tg-AD mice and whether fMRI-derived spectral and network biomarkers capture these changes alongside associated behavioral benefit.

Adult 3×Tg-AD mice and age-matched wild-type (WT) controls underwent rs-fMRI to assess FC, power spectral density (PSD), and fractional amplitude of low-frequency fluctuations (fALFF) across slow-5 and slow-4 bands. Acute TPS effects were assessed using interleaved rs-fMRI before and after repeated stimulation trains. A separate longitudinal cohort of 3×Tg-AD mice received six TPS sessions over two weeks and was imaged 24 h and 120 h after the final session. TPS was delivered through the intact skull using ultrashort acoustic impulses. In an independent behavioral cohort, aged 3×Tg-AD and WT mice received either active TPS or sham treatment over two weeks, followed by novel object recognition testing. Novel object preference was analyzed while accounting for total object exploration time as covariate.

3×Tg-AD mice showed pronounced tau deposition in hippocampal and extra-hippocampal regions, including the amygdala and endopiriform nucleus (EP), alongside widespread impairments in resting-state FC (Fig. 1a–c). To assess TPS-induced modulation of these abnormalities, 3×Tg-AD mice underwent rs-fMRI before and after two interleaved TPS blocks, with WT mice serving as reference controls (Fig. 1d–e). Spectral analysis revealed reduced low-frequency BOLD power in AD-relevant cortical and subcortical regions, including the cingulate cortex (Cg), insula (Ins), caudoputamen (CPu), EP, and hippocampal areas (Fig. 1f–g). Band-resolved analysis further showed altered fractional power distribution, characterized by reduced slow-5 activity and shifted slow-4 contributions across multiple regions (Fig. 1h–i). Acute TPS shifted regional power spectra toward WT-like profiles, with the most consistent modulation emerging after repeated stimulation and the strongest effects observed in Cg, Ins, CPu, and EP circuits (Fig. 1g). Similarly, slow-5/slow-4 spectral balance partially normalized toward WT levels in key brain regions following acute TPS (Fig. 1h–i). Longitudinal TPS reproduced this spectral rebalancing, with increased low-frequency BOLD power persisting for at least 120 h after the final stimulation (Fig. 2a–b). Notably, hippocampal regions that showed limited acute responsiveness exhibited delayed spectral modulation after repeated TPS. In behavioral testing, sham-treated 3×Tg-AD mice showed a marked decline in object-directed exploration, whereas TPS-treated 3×Tg-AD mice maintained exploratory engagement (Fig. 2c–d). After controlling for total exploration time, TPS-treated 3×Tg-AD mice showed improved novel object preference, supporting an exploration-adjusted enhancement in recognition memory (Fig. 2e).

These findings show that 3×Tg-AD mice exhibit frequency-specific disruption of spontaneous BOLD dynamics, consistent with impaired large-scale network communication. TPS partially rebalanced these abnormalities in a region-dependent and non-linear manner, with stronger effects after repeated stimulation, suggesting that vulnerable circuits may require cumulative engagement. The persistence of spectral changes after longitudinal TPS supports sustained modulation of intrinsic network organization rather than a transient post-stimulation shift. Delayed hippocampal modulation may reflect higher pathological burden or secondary recruitment through earlier normalization of cortical and striatal hubs. The behavioral preservation of exploratory engagement and improved recognition-memory performance paralleled the fMRI-detected normalization of AD-affected cortical, striatal, and hippocampal circuits, supporting the functional relevance of TPS-induced BOLD biomarker changes.

Frequency-resolved resting-state fMRI identified AD-related BOLD abnormalities, including reduced low-frequency power and altered slow-5/slow-4 balance. TPS acutely and longitudinally modulated these fMRI-derived biomarkers, partially normalizing spectral features in AD-relevant circuits. Together with behavioral evidence for improved recognition-memory performance, these findings support spectral BOLD metrics as biomarkers for tracking AD-related circuit dysfunction and treatment-associated network remodeling.
Irmak GEZGINER (Zürich, Switzerland) , Maria Eleni KARAKATSANI , Prakruti NANDA , Diana KINDLER , Rafael STORZ , Markus BELAU , Xosé Luís DEÁN-BEN , Daniel RAZANSKY
13:39 - 13:42 #54428 - PG166 Feasibility of a Mask-Free Framework for Enhanced Susceptibility Mapping from Gradient-Echo MRI Using Magnitude and Phase in Alzheimer’s Disease Models.
PG166 Feasibility of a Mask-Free Framework for Enhanced Susceptibility Mapping from Gradient-Echo MRI Using Magnitude and Phase in Alzheimer’s Disease Models.

Alzheimer’s disease (AD) is characterised by progressive cognitive decline, and animal models provide a means of investigating disease mechanisms and evaluating therapeutic strategies (1). Quantitative Susceptibility Mapping (2) (QSM) is sensitive to iron accumulation and microstructural alterations relevant to AD pathology (3). However, its application in preclinical studies remains limited by methodological challenges, which are exacerbated at ultra-high magnetic field and high spatial resolution. Many existing pipelines rely on explicit brain masking to stabilise dipole inversion (4). While effective, such masking steps reduce reproducibility and can hinder the analysis of structures near tissue boundaries. Here, we propose a robust framework designed to process gradient-echo data without requiring explicit masking, by fully exploiting both magnitude and phase information, providing qualitative and quantitative susceptibility contrasts in AD models.

Experiments were conducted on two AD transgenic murine models: a Fischer 344 Tg-AD (5) rat line (one male animal aged 1 year and 7 months) and a C57BL/6 APP/PS1 (6) mouse line (one male animal aged 1 year and 8 months). MRI data were acquired post mortem on Bruker preclinical systems operating at 7T (rat) and 11.7T (mouse), using 3D multi-gradient echo (MGE) sequences, with acquisition parameters adapted to each model and field strength (Table 1). Magnitude data were corrected to isolate (i) T2*-weighted contrast from T1 and bias field signals and (ii) anatomical contrast with attenuated CSF signals, while phase data were processed with a dedicated and robust strategy to provide whole-head Enhanced Susceptibility Maps (ESM). Phase unwrapping and background field removal were performed using a Laplacian-based approach (7). Magnetic susceptibility maps were then estimated using a constrained optimisation (maximum likelihood) formulation with zeroth- and second-order derivative priors.

The method demonstrates robustness and reproducibility across different MRI field strengths and species, providing standardised susceptibility imaging in preclinical settings. Based on a single multi-echo acquisition, it provides co-localized R2*, T2*-weighted (corrected from T1 and bias field), anatomical (with attenuated CSF signals), and ESM without the need for anatomical brain masking (Figure 1). These co-registered multi-contrast images allow precise analysis of key brain regions of interest, including the olfactory bulb, cortex, hippocampus, thalamus, and cerebellum. In addition, several myelinated fiber tracts were identifiable (Figure 3a, white arrow). In the rat model, iron accumulation was observed in the hippocampus, thalamus, and hypothalamus, with more subtle accumulations detected in the olfactory bulb (Figure 2). In the mouse model, iron accumulation appeared more localised in the hippocampus and the cortex (Figure 3). For both animals, the regions in which iron deposits are detected are consistent with the expected distribution of amyloid plaques for these types of AD model and the age of the scanned animals (5,6).

The presented preclinical framework fully leverages multi-echo data by enabling whole-head enhanced susceptibility contrasts with multiple co-localised information (R2* map, T2*-weighted, anatomical images, and whole-head ESM), without the need for anatomical brain masking. Applied to two well-established transgenic Alzheimer’s disease models - the Tg-AD rat and the APP/PS1 mouse - this framework demonstrates its ability to detect the localised paramagnetic accumulations in the murine brain. These results highlight its relevance and potential value for preclinical trials evaluating innovative therapeutic strategies for Alzheimer’s disease.
Stephane ROCHE , Samira MCHINDA , Erwan SELINGUE , Sebastien MERIAUX , Ludovic DE ROCHEFORT (Marseille)
13:42 - 13:45 #54414 - PG167 Assessing the role of RTP801/REDD1 in hippocampal plasticity with resting-state fMRI in a murine neuroinflammatory model.
PG167 Assessing the role of RTP801/REDD1 in hippocampal plasticity with resting-state fMRI in a murine neuroinflammatory model.

Neuroinflammation contributes to neurodegenerative diseases such as Alzheimer's disease (AD), Parkinson's disease (PD), and Huntington's disease (HD), driving synaptic dysfunction and cognitive decline [1,2]. RTP801 (REDD1) is a stress-responsive protein and regulator of cellular homeostasis, normally expressed at low levels in neurons and astrocytes [3]. Under stress, RTP801 is rapidly induced, impairing synaptic plasticity and contributing to neuroinflammation and neuronal death [2-4]. RTP801 is upregulated in postmortem brains of PD, HD, and AD patients and corresponding murine models. Notably, its selective downregulation in hippocampal (HC) neurons of murine AD models has been shown to restore synaptic plasticity and reduce neuroinflammation [3,5]. Systemic administration of lipopolysaccharide (LPS) is a widely used method to induce neuroinflammation in rodents, mimicking the pathological cellular mechanisms in AD and HD [6]. Functional MRI (fMRI) measures brain activity via the blood oxygen level–dependent (BOLD) signal, reflecting local changes in blood oxygenation associated with neuronal activity. In resting-state fMRI (rs-fMRI), temporal correlations between regional BOLD fluctuations are interpreted as functional connectivity [7]. We use rs-fMRI and seed-based analysis to investigate whether RTP801 knock-out (KO) preserves HC network functional connectivity in a mouse model of LPS-induced neuroinflammation [8]. If confirmed, our findings would support RTP801 as a new therapeutic target and biomarker for the diagnosis and monitoring of AD or HD.

Two-month-old Ddit4ᶠˡ/ᶠˡ mice received bilateral HC injections of AAV-CamKII-GFP (n=10, 5M/5F [male/female]) to enable RTP801 expression in neurons, or AAV-CamKII-Cre (n=10, 5M/5F) to suppress it. After 30 days, all mice received a 1 mg/kg LPS injection to induce neuroinflammation. Forty days post-LPS, mice were imaged on a Bruker BioSpec 7T scanner under isoflurane (0.5%) and medetomidine (0.6 mg/kg/h) anesthesia. A T2-weighted anatomical RARE scan was acquired (TR = 2336 ms, TE = 33 ms, RARE factor = 8, voxel size = 0.078 × 0.078 × 0.7 mm³, 22 slices, 2 averages), followed by gradient-echo EPI rs-fMRI (TR = 2000 ms, TE = 19.44 ms, flip angle = 90°, voxel size = 0.21 × 0.21 × 0.5 mm³, ~14 min). Rs-fMRI data was preprocessed using slice-timing correction and motion correction (SPM) [9], skull stripping, non-linear registration to a mouse brain atlas [10], smoothing and bandpass filtering (0.01–0.1 Hz) with Nilearn [11]. Seed-based functional connectivity maps were computed in atlas space as the Pearson correlation between the BOLD timeseries of the left and right HC seeds and every other voxel. This was applied independently to each seed, resulting in two separate whole-brain connectivity maps (left and right HC). Group differences (GFP vs. Cre) were assessed voxelwise using FSL randomise (5000 permutations) [12], with a 2-sample design and sex as a covariate. Cluster volumes (mm³; voxel count × resolution) are reported for voxels surviving TFCE at p < 0.005 (no family-wise error correction). All procedures were approved by the University of Barcelona ethics committee and followed European Community Guidelines (Directive 2010/63/EU) and Spanish (RD 53/2013) regulations.

Fig. 1 llustrates the location of the hippocampus seed (cornu ammonis 3 (CA3) + dentate gyrus, bilateral) overlaid on coronal slices of the MouseX-DW-ALLEN T2-weighted atlas template. Tab. 1 Summarizes the cluster volumes surviving a TFCE threshold of p < 0.005 per contrast and HC seed. The Cre > GFP contrast (RTP801-KO under neuroinflammation) shows increased functional connectivity between the HC and surrounding regions, for the left seed only (0.76 mm³). The reverse (GFP > Cre) yielded no voxels in either seed, suggesting that pathologically elevated RTP801 will suppress HC network coupling. A sex effect was also detected, with a pronounced asymmetry observed via the right HC seed (M > F: 0.43 mm³; F > M: 0.30 mm³). Fig. 2 Shows the spatial distribution of voxels (p < 0.005) across coronal and horizontal planes for the RTP801-KO contrast. Fig. 3 Ranks the top regions of interest by effect size, characterizing the connectivity profile with RTP801-KO (p < 0.005). For the left HC, the strongest effects were in the left primary somatosensory area (0.106 mm³), left globus pallidus (0.084 mm³), and right dentate gyrus (0.055 mm³).

Our findings suggest that RTP801 suppression is associated with greater left HC functional connectivity after LPS-induced neuroinflammation, indicating a potential neuroprotective effect. Sex effects appeared non-negligible and remain to be explored in future studies. 

Our results are in agreement with previous mouse model studies [3-5,13], suggesting that RTP801 plays a substantive role in neuroinflammation. With further investigation, RTP801 may emerge as a biomarker and a therapeutic target in the treatment of AD or HD.
Anna VORONOVA (Barcelona, Spain) , Pol GARCIA-SEGURA , Carmen MARTÍNEZ-ALMUDÉVER , Lea MICHALKE , Xavier LOPEZ-GIL , Guadalupe SORIA , Cristina MALAGELADA GRAU , Emma MUÑOZ-MORENO
13:45 - 13:48 #54704 - PG168 An MRI-based study of neuroinflammation induced by high-fat diet in a TNFαKO murine model.
PG168 An MRI-based study of neuroinflammation induced by high-fat diet in a TNFαKO murine model.

Obesity is a pathological condition with a high and increasing prevalence in our society, due to the complex relationships between biological and socioeconomic influences [1]. High-fat diets (HFD) activate pro-inflammatory cascades in the brain because saturated fatty acids can cross the blood-brain barrier. In this context, Tumor Necrosis Factor alpha (TNFα) sits at the crossroads of neuroinflammation (NI) and obesity, shaping metabolic and neural outcomes with a dual role: proinflammatory effects and neuroprotective phenomena. TNFα is not only a cytokine, but also a metabolic regulator, especially in hypothalamus (HTH) [2]. Our objective is to study, through multiparametric MRI (mpMRI), the role in NI of the constitutive absence of TNFα in a TNFαKO murine model.

Eight-week old C57BL/6J wild-type mice (n=30) and TNFαKO mice with same genetic background (n=52) were fed for 20 weeks either with SD and with HFD. In weeks 10 and 20, mpMRI studies were conducted using a Bruker Biospec 7T scanner, acquiring diffusion tensor imaging (DTI). Subsequently, parametric maps were processed with an in-house Python-based software (Resomapper) and 4 brain regions of interest (ROIs) were selected and quantified using ImageJ software: cortex (Cx), hippocampus (HPC), thalamus (Thal) and HTH. Linear mixed effects models were used to statistically assess the impact of diet, sex and genotype (WT or KO) across different areas. Indirect calorimetry analysis (Phenomaster TSE Systems GmbH) was performed 5 days after both temporal MRI studies, obtaining data on indirect calorimetry, motor activity and food intake, among other parameters. Finally, we carried out immunofluorescence assays of every group after 20 weeks of diet diversification to validate selected findings.

In both genotypes, mice with SD only achieve approximately 35% of weight gain, however when they are fed with HFD the weight gain can reach 120%. WT mice gained weight faster than KO mice since the second week of diet diversification. Every group with HFD exhibit a loss of circadian oscillations of respiratory exchange ratio (RER) in both temporal points. In week 10, TNFαKO mice have a lesser RER than WT mice. But after 20 weeks, this difference is only preserved in the obese TNFαKO group. Regarding locomotor movement, obese mice are less active than mice with average body weight. However, we see differences between genotypes in females: WT females are more active than TNFαKO females. MRI studies reveal significant differences between genotypes in both temporal points: higher MD, AD and FA in WT mice compared with KO animals across all groups and all 4 ROIs, in week 10. However, only AD and FA show significant differences after week 20. Finally, the immunoassay with anti-Iba1 and anti-GFAP reveals increasing microgliosis and astrogliosis in both genotypes fed with HFD. Currently, further results are being analysed.

The fact that KO mice show lower dark-phase RER than WT at week 10 suggests that TNFα could constrain early substrate circadian switch, and that its absence favours earlier reliance on fatty-acid oxidation, and at week 20 the effect of the absence of this factor may be compensated by some metabolic mechanisms [3]. Preserved dark-phase locomotor activity across genotypes indicates that circadian organization of this parameter is still present even when substrate use is altered. And, WT female mice present higher RER and they are more active than KO females which suggests an easier reliance on lipid oxidation. Regardless of diet, DTI data (Fig. 1) show that KO mice diverge from WT mice, particularly in week 10, displaying distinct MRI signatures of microstructural alterations associated with NI. These changes may reflect subtle axonal or fiber reorganization together with transient glial or vascular remodeling. For instance, lower MD values in KO mice may suggest reduced vasogenic edema and a partially protective genotype-dependent response [4], however in week 20 this protection seems to be overridden by the severe obesity phenotype. These differences in parameters are stronger after 10-week dietary diversification but diminish with longer exposure, suggesting early TNFα–dependent modulation of brain diffusivity parameters across regions. By contrast, the attenuation of these differences in week 20 suggests a possible compensatory mechanism in the brain, or a plateau of the structural response over time.

Preliminary results show how genotype strongly influences metabolic regulation and microstructure during early phases, and these differences are detected in vivo by MRI. This genotype divergence is followed by a later phase in which long-term HFD appears to partially override genotype-dependent effects, through compensatory structural remodeling or other compensatory mechanisms. Indirect calorimetry findings support the obesity phenotype acquisition, while ongoing analysis of immunofluorescence assay is essential to further validate and interpret the results.
Darwin CÓRDOVA-ASCURRA (Madrid, Spain) , Raquel GONZÁLEZ-ALDAY , Nuria ARIAS-RAMOS , Jesús PACHECO-TORRES , Pilar LÓPEZ-LARRUBIA
13:48 - 13:51 #54606 - PG169 Harnessing 3 Tesla MRI for in vivo microstructural characterization of the glioblastoma microenvironment in patient-derived mouse models.
PG169 Harnessing 3 Tesla MRI for in vivo microstructural characterization of the glioblastoma microenvironment in patient-derived mouse models.

Glioblastoma is the most aggressive primary brain tumor in adults, with dismal prognosis [1, 2]. Limited therapeutic efficacy is partially driven by a lack of MRI specificity during treatment planning and response monitoring [3]. Diffusion tensor and kurtosis imaging, together with biophysical modeling techniques, have been developed to characterize brain tissue microstructure and the tumor microenvironment in humans and preclinical cancer models. However, preclinical methods largely rely on (ultra)high-field systems and complex gradient-encoding schemes [4, 5], while clinical approaches have limited histologic validation, altogether hindering clinical translation to patients. Here, we present a sensitivity-enhanced preclinical 3 Tesla framework for rapid in vivo characterization of mouse brain microstructure using diffusion kurtosis imaging and multi-compartment modeling, and demonstrate preliminary application in a patient-derived mouse model of glioblastoma.

Animal experiments were preapproved by institutional and national authorities and performed according to EU Directive 2010/63. Healthy C57BL6j mice (n=5) were used, followed by a Nude CBA xenograft mouse model of glioblastoma (patient-derived BIT14, University of Copenhagen DK), generated by orthotopic cell injection [6]. MRI was performed on a 3 Tesla Bruker BioSpec Maxwell scanner, equipped with high-power gradients (900 mT/m) and a 2-channel cryogenic surface RF coil, running PV360 v3.7. Mice were anesthetized with isoflurane (1.5-2.5% in 30% oxygen, 70-80 BPM) and warmed (36-37ºC), and imaged with anatomical T2 imaging (turbo-RARE) followed by single-shot diffusion EPI: TR/TE, 2500/35 ms; δ/Δ, 3/24 ms; 30 b0 and 8 b-values (250-8000 s/mm2); 24 directions; 116 µm in-plane resolution; 9 slices (0.6 mm); 18.5 min acquisition time. Noise removal included different combinations of inline CNN (PV360 v3.7) and offline TPCA methods [7]. Data were processed in Matlab 2023b for SNR assessment (b0 pixel intensity: mean/SD), DKI fitting (up to b 2000 s/mm2) [8, 9], and SANDI modeling (up to b 8000 s/mm2) [10, 11], and compared across manually delineated cortical ROIs. Statistical analysis was performed using repeated measurements ANOVA (SPSS24): * p<0.05.

High-quality anatomical and diffusion EPI data were consistently acquired (Fig 1A). CNN alone (0-100%) introduced only modest SNR improvements, irrespective of ROI distance to the surface RF coil (Fig 1B). In contrast, TPCA consistently increased SNR >10-fold across the whole brain, independent of prior inline CNN noise reduction (Fig 1C). Importantly, TPCA denoising of complex-uncombined channel data (cuTPCA: 29 min) was 4-fold slower and yielded lower SNR than standard magnitude-combined data (mcTPCA, with or without prior cuCNN: 7 min). While CNN and TPCA did not alter DKI fitting (Fig 2A), cuCNN-mcTPCA combinations generated more homogeneous Mean Diffusivity maps across ROIs (Fig 2B). For SANDI compartment modeling, cuTPCA and cuCNN100-mcTPCA demonstrated the best overall performance (Fig 3A), although inferior brain regions remained difficult to resolve (Fig 3B). Preliminary in vivo application in the patient-derived xenograft model revealed imaging features consistent with infiltrative/diffuse glioblastoma histology (H&E), which remained barely detectable on conventional T2-weighted MRI (Fig 4A). These included increased radial diffusivity, reduced fractional anisotropy, and limited disruption of overall fiber organization (Fig 4B), consistent with increased extracellular fraction and larger glioma cell size (Fig 4C). These features were robustly detected using both cuTPCA and cuCNN100-mcTPCA pipelines.

Offline SNR enhancement of diffusion MRI data using conventional mcTPCA can be further improved through inline cuCNN noise reduction during image reconstruction. This combined framework is 4-fold faster than cuTPCA while delivering comparable performance for DKI and SANDI modeling in the healthy mouse brain, together with promising preliminary results with patient-derived glioblastoma.

Combining a 3T preclinical MRI scanner with a cryogenic coil and unbiased denoising strategies provides a highly sensitive and translational framework for advanced microstructural characterization of the healthy mouse brain and patient-derived glioblastoma. Future work will focus on adapting the SANDI modelling for brain tumor applications and longitudinal quantitative monitoring of tumor microstructure changes during disease progression, validate against whole tumor histology.
Joao F ZAMITH (Porto, Portugal) , Andrada IAUNUS , Rafael N HENRIQUES , Nuno HIGINO , Joana PEIXOTO , Jorge LIMA , Rui V SIMOES
13:51 - 13:54 #54588 - PG170 In vivo SANDI diffusion MRI reveals cerebral neuroplasticity associated with long-term functional recovery in a rat model of spinal cord injury.
PG170 In vivo SANDI diffusion MRI reveals cerebral neuroplasticity associated with long-term functional recovery in a rat model of spinal cord injury.

Spinal cord injury (SCI) is a severe neurological condition that causes motor, sensory, and autonomic impairments. Functional recovery after SCI has been linked to neuroplastic reorganization of neural circuits within the brain [1]. Characterizing microstructural alterations is important for understanding recovery mechanisms and developing targeted neuromodulatory interventions [2]. In this study, we applied Soma and Neurite Density Imaging (SANDI) [3] to diffusion MRI (dMRI) data to identify biologically interpretable markers of neuroplasticity following SCI and evaluated their association with behavioural recovery.

Nine-week-old Sprague-Dawley rats underwent either a unilateral right-sided cervical C5 cervical contusion injury (400 kDyn; n = 12, sex-balanced) or sham surgery (n = 13, sex-balanced). Functional recovery was assessed longitudinally at weeks 1, 2, 5, 8 and 11 post-injury using the Irvine, Beatties, and Bresnahan (IBB) Forelimb scale test [4]. Multi-shell dMRI was acquired at 1, 6, and 10 weeks post injury on a 9.4 T MRI system (Bruker BioSpin, Germany) using b-values of 800, 1200, 2800, 4000, 6000 s/mm² with 45, 50, 55, 60, and 65 diffusion directions respectively. The experimental design is illustrated in fig. 1. SANDI parameters, including soma, neurite, and extracellular signal fractions, were estimated using constrained nonlinear fitting of the compartmental diffusion model [3] in the left somatosensory cortex, thalamus and temporal association cortex because of their relevant role in motor and sensory performances. For each sex, the SANDI-metrics were normalized to the mean of sham animals of week 1 post-injury. Statistical analyses were performed using a linear mixed-effects model with group and time as fixed effects and sex as a covariate. Region-of-interest analyses were corrected with FDR correction, while threshold-free cluster enhancement (TFCE) correction was used for the voxel-wise analysis. Associations between IBB scores at week 11 and SANDI metrics at 1 week post-injury in the left motor and somatosensory cortices were assessed using Pearson correlations in SCI animals.

Following SCI, rats showed impaired forelimb function at the acute stage, with significantly lower IBB scores than sham controls (p<0.0001), followed by partial spontaneous recovery over time (fig. 2A,B). At 1 week post-injury, SANDI analysis revealed microstructural alterations in several brain regions (fig. 3A), including a widespread reduction in extracellular fraction predominantly localized to the left hemisphere contralateral to the injury site (p<0.05; fig. 3A). At the regional level, the left somatosensory cortex showed increased soma signal fraction (p<0.0001) and reduced extracellular fraction (p=0.0007) in SCI rats compared to sham controls. Both these measures stabilized by 6–10 weeks post-injury, whereas no change was observed in neurite fraction (fig. 3B). In the left motor cortex, SCI animals showed a significant increase in soma fraction compared to sham controls (main group effect, p=0.0218), while no significant changes were observed in neurite or extracellular fractions (fig. 3B). In the thalamus, neurite fraction increased at 1 week post-injury (p=0.0080) and stabilized over time, accompanied by reduced extracellular fraction (p=0.0103; fig. 3B. Correlation analyses revealed significant associations between early SANDI alterations and long-term functional recovery. Soma fraction at week 1 positively correlated with IBB scores at week 11 in the left somatosensory cortex (R²=0.7174, p=0.008; fig. 4A) and left motor cortex (R²=0.9293, p=0.0001; fig. 4B). In contrast, neurite and extracellular fractions in the left motor cortex negatively correlated with IBB scores (R²=0.5355, p=0.0391; R²=0.5394, p=0.038; fig. 4B).

These findings show that spinal cord injury induces early microstructural alterations in supraspinal sensorimotor regions associated with long-term functional recovery. Acute changes in soma, neurite and extracellular compartments likely reflect transient tissue remodelling, neuroinflammatory responses, and/or compensatory neuroplasticity. The stabilization of SANDI metrics across multiple regions over time, together with their correlation with later IBB performance, suggests that early cortical remodelling is closely linked to recovery after SCI.

These findings demonstrate that spinal cord injury induces transient, region-specific microstructural alterations in cortical and subcortical compartments that can be detected using dMRI and SANDI, accompanied by partial spontaneous recovery of forelimb function. Additionally, early post-injury changes were significantly associated with long-term motor outcome, suggesting an association between early cortical remodelling and subsequent functional recovery, indicating a potential window of treatment for SCI.
Lori BERCKMANS (Antwerp, Belgium) , Chiara VAELEN , Johan VAN AUDEKERKE , Ignace VAN SPILBEECK , Nicolas HALLOIN , Aleksandar JANKOVSKI , Charles NICAISE , Marleen VERHOYE , Daniele BERTOGLIO
13:54 - 13:57 #54611 - PG171 A translational MRS framework for in vivo metabolic phenotyping of human glioma xenografts.
PG171 A translational MRS framework for in vivo metabolic phenotyping of human glioma xenografts.

Glioblastoma (GBM) is the most aggressive primary brain tumor in adults [1, 2]. Despite longstanding interest in magnetic resonance spectroscopy (MRS) for in vivo metabolic characterization of GBM in patients and preclinical models, spanning steady-state quantitative mapping [3, 4], spectral pattern classification [5, 6], treatment response monitoring [7, 8], and emerging techniques for quantitative metabolic flux mapping [9-11], MRS has yet to deliver a clinical application for GBM management. This limitation is particularly relevant in light of recent biopsy studies identifying prognostically relevant GBM phenotypes [12, 13]. While preclinical xenograft models provide unique platforms for longitudinal characterization of human glioma progression and treatment response, their translation to GBM patients is often limited by the use of (ultra)high magnetic field strengths (≥7 Tesla), which substantially improve sensitivity but condition metabolite relaxation times and spectral profiles compared with clinical 3 Tesla systems. Here, we present a novel framework combining 3 Tesla MRI, a cryogenic RF coil, and semi-LASER spectroscopy, demonstrating rapid, high-quality, reproducible in vivo mouse brain 1H-MRS across different mouse strains and its preliminary application for steady-state metabolic phenotyping of human glioma xenografts.

Animal experiments were preapproved by institutional and national authorities and performed according to EU Directive 2010/63. A total of 7 mice were included in this preliminary study: n=3 healthy animals (BALB/c, Nude CBA, and C57BL6j); and n=2 xenografts of human glioma in Nude CBA mice, including commercial U87 and patient-derived BIT14 (University of Copenhagen DK), generated by orthotopic cell injection [9]. MRI was performed on a 3 Tesla Bruker BioSpec Maxwell scanner, equipped with high-power gradients (900 mT/m) and a 2-channel cryogenic surface RF coil, running PV360 v3.7. Mice were anesthetized with isoflurane (1.5-2.5% in 30% oxygen, 70-80 BPM) and warmed (36-37ºC). Anatomical T2 imaging (turbo-RARE) was followed by 1H-MRS with semi-LASER localization: voxel volume between 9.4-13.5 mm3; TR/TE = 2500/21.5 ms ; 2048 spectral points; sweep width 10.04 ppm; 128 averages; 8 dummy scans; VAPOR water suppression; outer volume suppression; reference water scan with 4 averages; and navigator-based field drift correction every TR; total acquisition time, 5min20sec. The MRS data acquired were exported and individually analyzed in LC Model using a simulated basis set, including 19 metabolites and macromolecules/lipids signals, with water referencing. The results were plotted for individual metabolites as absolute concentrations and relative to total creatine.

MRS data were successfully acquired from cortical brain regions of healthy mice (Fig 1), demonstrating excellent spectral quality at 3 Tesla (SNR 33±10 and FWHM 0.022±0.006 ppm) and highly consistent metabolic profiles across different genetic backgrounds and voxel sizes (12-13.5 mm3). Longitudinal monitoring of U87 glioma progression (Fig 2) suggests progressive metabolic changes in the peritumoral region involving cortex and corpus callosum, including reductions in NAA, total creatine, glutamate, and glutamate-glutamine, depicted as absolute concentrations rather than metabolic ratios. Lactate progressively increased and was consistently detectable using both quantification approaches. These metabolic changes became more pronounced within the tumor core, where choline-containing compounds and myo-inositol & glycine were markedly increased, consistent with the highly proliferative phenotype of the compact tumor model. In the patient-derived glioblastoma model (Fig 3), using the contralateral hemisphere as an internal reference, the more infiltrative and diffuse tumor phenotype identified by histology was also associated with higher choline-containing compounds and myo-inositol & glycine, together with reduced total NAA and glutamate. In contrast to the U87 model, increased glutamate-glutamine levels suggest enhanced glutamine synthesis/accumulation during glioma infiltration.

Combining preclinical 3 Tesla MRI with a cryogenic RF coil provides high-quality, reproducible mouse brain 1H-MRS data. Preliminary application to human glioma xenograft models reflects a progressive metabolic shift toward the Warburg phenotype during tumor progression, and suggests distinct metabolic reprogramming patterns in compact vs infiltrative human glioma, consistent with recent reports [9, 14-16].

In vivo steady-state metabolic phenotyping of human glioma xenografts is feasible at 3T, closely reproducing human 1H-MRS spectral patterns [17]. This preliminary framework will be extended to larger tumor cohorts, together with technical developments aimed at improving sensitivity through spectral denoising [18], and enhancing quantification precision through partial-volume corrections and acquired metabolite-nulled macromolecule basis sets.
Margarida FIGUEIREDO (Porto, Portugal) , Nuno HIGINO , Clemence LIGNEUL , Joana PEIXOTO , Jorge LIMA , Rui V SIMOES
13:57 - 14:00 #54422 - PG172 Phosphorous MR Spectroscopy Reveals Altered Cerebral Energy Metabolism with Disease Progression in a Multiple Sclerosis Model.
PG172 Phosphorous MR Spectroscopy Reveals Altered Cerebral Energy Metabolism with Disease Progression in a Multiple Sclerosis Model.

Multiple sclerosis (MS) is a chronic neuroinflammatory disease characterized by demyelination, axonal damage, and progressive neurological impairment[1]. Magnetic resonance (MR) methods play a central role in the diagnosis and monitoring of MS. However, conventional MRI measures often show limited correlation with clinical disability[2, 3], highlighting the need for more sensitive markers that reflect underlying biological processes. Alterations in cerebral energy metabolism have been increasingly implicated in MS, and previous studies in patients suggest such changes, although findings remain inconsistent and limited by small and predominantly cross-sectional cohorts[4]. Phosphorus magnetic resonance spectroscopy imaging (31P MRSI) enables non-invasive assessment of phosphate metabolism within localized regions of the brain[5]. It can detect key metabolites such as phosphocreatine (PCr) and adenosine triphosphate (ATP), which are central to cerebral energy metabolism. However, this technique is usually limited by low signal-to-noise ratio (SNR) under in vivo conditions. In this study, we performed longitudinal ³¹P MRSI in the experimental autoimmune encephalomyelitis (EAE) model, which has not previously been investigated using ³¹P MRS. Due to spatial localization into small voxels and intrinsically low 31P sensitivity of MRSI, we used a cryogenically-cooled radiofrequency probe (CRP) to enhance sensitivity[6-8].

EAE was induced in female SJL/J mice (n=9, 10 weeks old) by immunization with PLP139–151 to model a relapsing–remitting disease course[9]. Clinical severity was assessed daily using a standardized 0–5 scoring scale, and body weight and general health were monitored concurrently. Longitudinal 31P MRSI was performed at baseline (day -2) and at multiple timepoints post-immunization (days 8, 13, 20 ) on a 9.4 T Bruker BioSpec system using a 31P CRP to enhance sensitivity. Spatially resolved ³¹P spectra were acquired using a 3D FID-based CSI sequence with time-optimal control–based excitation[10] (TR=800 ms, TE=0.85 ms, NA=1, matrix=10×10×12, acquisition time=16 min). Anatomical reference imaging included T2-weighted RARE, as well as T1-weighted MDEFT and quantitative T1 mapping pre- and post-gadolinium administration to evaluate contrast-enhancing lesions. Spectral data were processed using jMRUI with preprocessing[11] including phase correction and frequency alignment. Metabolite quantification was performed using AMARES[12], with a prior-knowledge model comprising four Lorentzian resonances corresponding to PCr and α-, β-, and γ-ATP, and phosphocreatine-to-β-ATP (PCr/β-ATP) ratios were calculated. Longitudinal changes were assessed using linear mixed-effects modeling with Holm-adjusted post hoc comparisons, and associations with disease severity were evaluated using repeated-measures correlation.

One mouse was euthanized at day 13 due to severe EAE symptoms in accordance with animal welfare guidelines, and the remaining eight mice completed the full experimental protocol. EAE scores increased progressively over time, with disease onset occurring around day 10 post-immunization; peak severity was observed at approximately day 13, with partial remission beginning around day 17. Brain inflammation was confirmed by observation of gadolinium contrast-enhancing lesions. Longitudinal analysis using linear mixed-effects modeling revealed a significant increase in the PCr/β-ATP ratio at peak disease (day 13) compared to baseline (day −2, Holm-adjusted p<0.05), which returned to baseline levels by day 20 during partial remission. Repeated-measures correlation analysis revealed a significant positive association between PCr/β-ATP ratios and disease severity (r=0.49, p=0.012, 34 observations from 9 mice), indicating higher PCr/β-ATP ratios with increasing clinical severity. Notably, PCr/β-ATP was already increased at day 8, before clinical symptoms were detectable, suggesting that metabolic changes occur earlier than clinical signs.

The transient increase in PCr/β-ATP at peak disease indicates altered cerebral energy metabolism during acute neuroinflammatory activity, with normalization during remission suggesting reversibility. The significant repeated-measures correlation between PCr/β-ATP and clinical severity further supports a link between metabolic changes and disease activity. Together, these findings highlight the potential of ³¹P MRSI–derived metrics as sensitive, contrast-agent–independent markers of disease stage.

Longitudinal ³¹P MRS revealed transient alterations in cerebral energy metabolism during EAE, characterized by a peak increase in PCr/β-ATP at maximum disease severity and normalization during remission. The significant association between metabolic ratios and clinical scores supports the potential of ³¹P MRSI–derived metrics as non-invasive markers of disease activity.
Yinhao CHEN (Berlin, Germany) , Xiang HU , Florentin MARQUARDT , Clemens DIWOKY , Thomas GLADYTZ , Hélène RATINEY , Giorgi ASATIANI , Christina GRAF , Armin RUND , Alexander RAUSCHER , Friedemann PAUL , Thoralf NIENDORF , Jason MILLWARD , Sonia WAICZIES
14:00 - 14:03 #54163 - PG173 Phenotyping Human Mesenchymal Stem Cells using Hydroxyl Proton Transfer-Weighted (HPTw) MRI.
PG173 Phenotyping Human Mesenchymal Stem Cells using Hydroxyl Proton Transfer-Weighted (HPTw) MRI.

Human mesenchymal stem cells (hMSCs) have seen many clinical applications in regenerative medicine [1]. Yet, a critical barrier is the lack of a non-invasive way to track these cells without the use of exogenous labels that require expensive synthesis, safety testing, and regulatory approval [2]. Mannose-weighted (MANw) CEST MRI or hydroxyl proton transfer-weighted (HPTw) MRI has been proposed as a novel way to detect hMSCs [3] and mesenchymal cancer stem cells [4] by virtue of their high mannose content, avoiding the need to label them. We studied the dependence of the HPTw MRI signal on the number of cell passages, cell size, and differentiation into downstream lineages.

hMSCs were expanded from passage 3 to 9 (P3-P9), and their cell size was measured with an automated cell counter. Cell surface mannose content was quantified using flow cytometry with a mannose-specific fluorescent lectin (GNL-FITC). Cell pellets were imaged at 11.7 T using a vertical bore scanner. Undifferentiated hMSCs incubated with or without mannosidase inhibitor (10 µM kifunensine) were compared with their osteogenic and adipogenic progeny, as well as with human glial-restricted progenitors (hGRPs) to assess lineage and glycan specificity of the HPTw MRI signal. For in vivo validation, NOD-SCID mice received bilateral striatal injections of P3 and P5 hMSCs (1×10⁵ cells/site) and were scanned longitudinally at days 1, 4, and 11 using a 11.7T horizontal bore magnet.

Early to late passage (P3-P9) hMSCs (Fig. 1a) and their differentiated cell lineages (Fig. 1b) were characterized. Mannose-containing phantoms revealed an MTRasym peak at 0.8 ppm (Fig. 1c) and a linear dependence of the HPTw signal on concentration (Fig. 1d). Mannose content increased with cell passage number (Fig. 2a-e) and maintained a stable density per cell volume from early (P3) to late (P9) passages. The HPTw MRI contrast correlated strongly with cell volume and lectin-detected glycan levels, confirming that this MRI readout quantitatively reflects surface mannosylation (Fig. 2f,g). Despite an increase in cell size with passage, the cell volume-normalized HPTw signal remained constant.(Fig. 2h). Osteogenic and adipogenic differentiation of hMSCs led to a marked reduction in surface mannose expression and corresponding loss of HPTw signal (Fig. 3a-b, d-e). Treating hMSCs with kifunensine increased the fluorescent intensity (Fig. 3c) and CEST contrast (Fig. 3f). In vivo, both early (P3) and mid-late (P5) hMSCs produced a clear HPTw signal on Day 1. P5 hMSCs showed a higher contrast than P3 which persisted until Day 11.

This study introduces a new molecular MRI approach to detect the phenotype of hMSCs without the need of exogenous imaging agents. HPTw MRI allows label-free imaging of hMSC distribution and differentiation, which may accelerate clinical translation of MRI stem cell tracking. HPTw MRI is minimally affected by passage-related cell aging, yet sensitive to downstream cell differentiation.

HPTw MRI holds promise as a real-time, label-free quality control during hMSC manufacturing and characterization. Moreover, by providing a direct molecular readout of cell-surface glycosylation, this approach may improve the safety and efficacy of regenerative cell therapies by serving as a new non-invasive imaging tool to monitor hMSC engraftment and cell phenotype.
Imman HOSSEINI , Aline THOMAS , Wenshu QIAN , Safiya AFREEN , Guanshu LIU , Jeff BULTE (Baltimore, USA)
14:03 - 14:06 #54527 - PG174 Discrimination of α-synuclein conformational polymorphs using CEST-MRI at 11.7 T.
PG174 Discrimination of α-synuclein conformational polymorphs using CEST-MRI at 11.7 T.

Misfolded proteins that aggregate in the brain are central to the pathogenesis of many neurodegenerative disorders [1]. Synucleinopathies include Parkinson’s disease (PD), multiple system atrophy (MSA) and dementia with Lewy bodies (DLB). In these disorders, α-synuclein (α-syn) assembles into distinct conformational strains that drive divergent clinical phenotypes and propagate in a prion-like manner [1,2]. To date, no in vivo imaging modality has been shown to differentiate α-syn conformational strains. Chemical Exchange Saturation Transfer (CEST) MRI can selectively probe exchangeable amide protons (APT) and aliphatic relayed NOE signals (rNOE), two contrasts sensitive to protein conformation and β-sheet organization [3,4]. Here, we investigated whether ultrahigh-field CEST-MRI can fingerprint the two main α-syn polymorphs, fibrils and ribbons, and be used as a potential biomarker.

Recombinant human α-syn was assembled into fibrils and ribbons as already described [5]. Samples were subsequently resuspended in PBS (pH 7.4) at 3.6 mg/mL. Polymorph identity was confirmed by transmission electron microscopy (TEM, Fig. 1). Phantoms were scanned on a Bruker BioSpec 11.7 T with a pulsed presaturation scheme [6]. Z-spectra were acquired from −5 to +5 ppm with a 0.1 ppm step at the saturation condition that maximized polymorph contrast (B₁ = 1.0 µT, Tₛₐₜ = 10 s). A WASSR B₀ map was acquired in the same session for voxel-wise frequency correction. Polymorph signatures were derived as ΔZ(Δω) = |Zprotein − Zbuffer| to remove potential contribution of the buffer to the CEST signal. Four metrics were calculated to quantify and to compare the CEST signature of each polymorph; APT (ΔZ at +3.5 ppm), rNOE (ΔZ at −3.5 ppm), ∑APT (APT signal integrated over the +3.4 to +3.8 ppm amide area) and ∑rNOE (rNOE signal integrated over the −4.5 to −2.5 ppm aliphatic area). Pairwise comparisons were performed using Mann-Whitney U and Welch t-tests with Bonferroni correction.

CEST signatures clearly differentiated soluble α-syn (monomeric form) from aggregated α-syn assemblies (Fig. 2). Protein aggregation induced a marked reduction of the +3.5 ppm APT peak together with an increase of structured rNOE signals that were absent in the CEST signature of monomeric α-syn. Fibrils and ribbons exhibited distinct strain-specific signatures on both amide and aliphatic sides of the spectrum. On the amide side, both polymorphs exhibited a β-sheet-associated shoulder at +3.8 ppm. Fibrils retained a dominant +3.5 ppm peak with a smaller +3.8 ppm contribution (APT = 0.017 a.u., vs 0.038 in monomeric α-syn), whereas ribbons exhibited comparable amplitudes at +3.5 and +3.8 ppm (APT = 0.011 a.u.). On the aliphatic side, rNOE signals were consistently stronger in fibrils than in ribbons across the entire band (∑rNOE = 0.036 vs 0.024 a.u.). All four metrics significantly differentiated monomer, fibrils and ribbons (p < 0.001, Bonferroni-corrected pairwise comparisons, Fig. 3). Peak assignments supported distinct molecular contributions arising from β-sheet backbone amides and aliphatic side-chain environments (Fig. 4).

To our knowledge, this study provides the first demonstration that CEST MRI can discriminate monomeric and aggregated forms of α-syn and also differentiate several polymorphs of protein assemblies. The clear signature of APT and rNOE signals upon aggregation is consistent with their distinct physical origins. Aggregation reduces the number of solvent-accessible and mobile exchangeable amide protons, explaining the marked decrease in the +3.5 ppm APT signal. In contrast, rNOE transfer becomes efficient in large and slowly tumbling assemblies, accounting for the emergence of structured aliphatic signals in aggregated forms of α-syn. Differences between fibrils and ribbons were driven by both amide and aliphatic contributions. The redistribution between +3.5 and +3.8 ppm signals likely reflects distinct solvent accessibility and hydrogen-bonding states between polymorphs, consistent with their different cross-β architectures. On the aliphatic side, stronger rNOE signals in fibrils suggest strain-specific differences in side-chain organization and dipolar coupling efficiency. All four metrics (APT, rNOE, ∑APT, ∑rNOE) discriminated all preparations. ∑APT and ∑rNOE best separated fibrils from ribbons by capturing the +3.8 ppm β-sheet shoulder and the full aliphatic band, and should be more robust in vivo.

CEST-MRI at 11.7 T is a powerful method to characterize α-syn conformational signatures, especially using ∑APT and ∑rNOE. Fibrils and ribbons were differentiated by complementary changes in amide and aliphatic pools, including strain-specific rNOE signatures. These findings establish a foundation for conformation-sensitive MRI approaches aimed at probing α-syn strain heterogeneity and may improve the differential diagnosis of synucleinopathies.
Pierre LEMOIS (Paris) , Luc BOUSSET , Julien FLAMENT
14:06 - 14:09 #54626 - PG175 Simultaneous CINE T₁ and T₂* relaxometry in Murine Hearts.
PG175 Simultaneous CINE T₁ and T₂* relaxometry in Murine Hearts.

Quantitative T₁ and T₂* mapping provide distinct yet complementary insights into myocardial tissue properties and microstructural composition, enabling the detection of early pathological alterations beyond the capabilities of conventional weighted imaging. Combining T₁ and T₂* mapping within a unified acquisition framework enhances sensitivity to fibrosis, edema, ischemia, microvascular dysfunction, iron imbalance, and disruptions in oxygen metabolism, thereby offering improved potential for early diagnosis and tissue characterization [1-4]. Most studies acquire these parameters only at end diastole, and thus their variability across the cardiac cycle, and their links to cyclic changes in myocardial strain, blood volume, and oxygenation are generally neglected [4]. Implementing simultaneous T₁ and T₂* mapping in small animals is technically demanding due to rapid cardiac motion, small anatomical structures, limitations in cardiac triggering, and physiological motion artifacts. Here we propose a technique for simultaneous T₁ and T₂* mapping using retrospective cardiac phase–resolved reconstruction and demonstrate its feasibility for multi-parametric myocardial characterization in vivo.

The acquisition and reconstruction framework are shown in Figure 1. This was tested in vivo at 9.4 T in a healthy wild type C57BL/6J mouse (male, 27 weeks). A global inversion recovery (IR) preparation was combined with a multi gradient echo (MGE) sequence to introduce joint T₁ and T₂* weighting, for simultaneous assessment of relaxation and susceptibility effects within a single scan. In total 228 inversion pulses were applied to provide sufficient sampling across the temporal domains. Within each IR block, 300 MGE segments were collected (TR=15 ms; TE/ΔTE=2.5/2.1 ms; FOV=30×30 cm²; FA=10°; matrix size=128×128; slice thickness=1 mm; GRAPPA factor=1.68), followed by a 1000 ms recovery period. Data acquisition was performed continuously using sequential phase encoding. Retrospective gating was used to reconstruct images into 10 cardiac phases, 5 echo times and 10 inversion times. Quantitative T₁ and T₂* maps were then derived via pixel-wise fitting of the reconstructed datasets across the cardiac cycle. For validation, a phantom comprising multiple vials with predefined T₁ and T₂* values spanning the physiological myocardial range was imaged. Results from the proposed method were compared with established reference techniques (conventional MGE-based T₂* mapping; Look-Locker T₁ mapping) using linear regression and Bland-Altman plots.

T₁ and T₂* obtained from our approach show agreement with standard MGE and Look-Locker references (R2≈1, R2≈1) (Figure 2). Retrospectively reconstructed images of the heart at the mid-ventricular short-axis level (Figure 3) exhibited clear anatomical definition without noticeable ghosting artifacts. Our approach facilitates efficient sampling across multiple cardiac phases, echo times, and IR points. CINE anatomical images are shown in Figure 3A; Figures 3B and 3C show T₁-weighted IR images and T₂*-weighted images with corresponding parametric maps. Cardiac phase–resolved T₁ and T₂* maps are shown in Figures 4B and 4C. Within the left ventricular myocardium, the mean T₁ value was 968±321 ms, and the T₂* was 6.7±2.9 ms. Spatiotemporal variations of myocardial T₁ and T₂* averaged over the left ventricle are shown in Figure 4C.

Our results demonstrate the feasibility of CINE simultaneous T₁ and T₂* mapping in the healthy murine myocardium, enabling multiparametric tissue characterization. The measured native myocardial T₁ values are in agreement with previously reported findings [5]. The T₂* values fall within expected physiological ranges [6], indicating no evidence of iron deposition or hemorrhagic alterations. Our approach mitigates motion-related artifacts, eliminates slice misregistration associated with sequential mapping techniques, and yields high-resolution parametric maps across the cardiac cycle. Simultaneous estimation of both parameters within a single acquisition reduces variability arising from physiological changes.

Simultaneous CINE T₁ and T₂* mapping provides a foundation for integrated and comprehensive assessment of myocardial tissue properties. Our multi dimensional relaxometry may provide the sensitivity to detect early myocardial changes, to enhance the study of cardiovascular disease mechanisms and treatment effects. While the current implementation assumes motion robust conditions and was validated in healthy mice, the work will be extended to study animal models of cardiometabolic disease. Future work will include further optimization of motion compensation and sequence robustness, harmonizing the protocol with human 3T scanners, to enable validation of T₁–T₂* based CMR biomarkers and clinical translation.
Shahriar SHALIKAR , Xiaomin WANG , Jose Raul VELASQUEZ VIDES , Thomas GLADYTZ (Berlin, Germany) , Mostafa BERANGI , Jason MILLWARD , Thoralf NIENDORF , Frank KOBER , Min-Chi KU
14:09 - 14:12 #54699 - PG176 A Comparison of PAXgene and PFA Fixed Tissues for Ex-Vivo Mouse Liver MRI.
PG176 A Comparison of PAXgene and PFA Fixed Tissues for Ex-Vivo Mouse Liver MRI.

Ex-vivo MRI is a powerful tool for investigating tissue microstructure, offering high-resolution imaging capability without the time constraints inherent to in-vivo scans [1]. Tissues must undergo chemical fixation, prior to ex vivo MRI to attenuate tissue decay over time [2]. Aldehyde fixation, specifically reconstituted from paraformaldehyde (PFA), is widely regarded as the mostly common used method for ex-vivo MRI [2]. PFA effectively preserves tissue morphology through protein cross-linking but degrades DNA and RNA [2,3]. With the growing importance of multi-omics in translational research, providing standalone ex-vivo MRI data without corresponding genetic information is increasingly restrictive. PAXgene fixative has emerged as a novel tissue fixation solution that preserves tissue RNA, and proposed to be a viable option for subsequent pathological analysis [3]. To date, only a single study has demonstrated the feasibility of imaging PAXgene-fixed tissues, involving a single mouse kidney, but did not measure quantitative MRI metrics [4]. This study was the first to compare quantitative MRI metrics obtained from ex-vivo tissue fixed either with PFA or PAXgene in a normal mouse liver model. Furthermore, the effect of rehydration time after chemical fixation on the MRI signal was investigated.

MRI experiments were performed on a Bruker 9.4T MRI scanner. Four mouse livers were scanned following fixation with either PFA (4%, n=2) or the PAXgene Tissue System (Qiagen, n=2). To optimize the imaging workflow, especially for PAXgene-fixed livers, a PAXgene- and a PFA-fixed liver were scanned longitudinally after different rehydration times in phosphate-buffered saline (PBS). Note for the PAXgene fixation system, livers were initially fixed for 24-hour in PAXgene Fix solution and then washed/incubated in PAXgene Stabilizer for 24hours. As MRI was performed at the same time for both livers, those fixed in PFA were rehydrated for a further 24-hours in PBS compared to those fixed using the PAXgene. Thus, MRI was performed after 0, 2, 24 and 36 hours of rehydration for the first PAXgene-fixed liver and at these times but with an additional 24-hours of rehydration for the PFA-fixed control. Based on the initial temporal profile, a 36-hour rehydration window was selected as the optimal time point for the second PAXgene-fixed liver. For scanning, the two livers were placed into separate adjacent histological cassettes and secured inside a 50 mL syringe containing Fomblin. A schematic of the workflow is shown in Figure 1. Anatomical T2-weighted MRI was initially performed to evaluate the extent of tissue rehydration. Subsequently, high-resolution quantitative mapping was conducted, including T1, T2 and T2* mapping, and diffusion imaging with three orthogonal directions and five b-values to estimate mean diffusivity (MD) and mean kurtosis (MK). Pulse sequence parameters are shown in Table 1. For quantitative analysis, regions of interest (ROIs) were manually delineated within whole liver parenchyma using ITK-SNAP. Histograms maps of the quantitative metrics for each liver parenchymal ROI were generated.

Anatomical imaging revealed a complete absence of MR signal in the PAXgene fixed that did not undergo rehydration (Figure 2a). Following 24 hours and 36 hours of PBS rehydration, a viable MR signal was successfully recovered in the PAXgene-fixed liver, although the overall signal intensity remained lower (darker) than that of the corresponding PFA-fixed control, possibly arising from the additional 24-hours of rehydration for the latter fixed liver. However, the MR signal from the PAXgene-fixed livers were similar at both 24-hours and 36-hours rehydration times and suggests that this may be the maximal recoverable signal intensity following rehydration. T1, T2, and T2* values were observed to be significantly lower in the PAXgene-fixed tissues than in the PFA-fixed tissues (Figure 3). Conversely, diffusion metrics showed a higher MD and a lower MK in the PAXgene-fixed livers compared to their PFA-fixed counterparts (Figure 3).

This pilot study demonstrates that PAXgene-fixed tissue samples can be successfully imaged via MRI after an optimized rehydration protocol. However, our findings suggest that relaxometry and tissue microstructure MRI metrics vary when employing the two different fixation methods, consistent with that observed previously [6]. The attenuated relaxation times may be attributed to more tissue compaction or localized collapse in PAXgene-fixed livers. The elevated MD and reduced MK in the PAXgene-fixed livers may be attributed to a lower degree of protein cross-linking compared to the dense networks formed by PFA [2,3].

Our study demonstrates the feasibility of MRI to obtain quantitative measurements from PAXgene-fixed tissues and that this relative new fixative shows promise for integrating high-resolution ex-vivo MRI with downstream molecular biology, particularly for high-throughput biobank tissue studies.
Wenbo SUN (London, United Kingdom) , Timothy ALLEN , Matthew CHERUKARA , Thomas DOWE , James SUN , Jean-Baptiste VANNIER , Van Nhat Minh VO , Katarina ILIC , Eugene KIM , Diana CASH , Po-Wah SO , Foad ROUHANI , Andrada IANUS
14:12 - 14:15 #54168 - PG177 Bimodal MRI/MPI Cytometry for In Vivo Cell Tracking.
PG177 Bimodal MRI/MPI Cytometry for In Vivo Cell Tracking.

Developing non-invasive in vivo cytometry methods to longitudinally track and quantify therapeutic stem cells and immune cells remains an active area of research to successfully translate cell therapies into clinical practice. Cells can be labeled with superparamagnetic iron oxide (SPIO) nanoparticles in order to be detected by MRI and MPI. MRI cell tracking lacks specificity and the ability of cell quantification although it offers excellent spatial resolution near the single-cell level. MPI on the other hand enables whole-body imaging, specificity, and absolute cell quantification [1] but has poor resolution. Here, we used both magnetic imaging techniques side-by-side to perform in vivo cytometry for assessing injection route-, dose-, cell size- and disease-dependent differences in organ biodistribution.

Human mesenchymal stem cells (hMSCs) and neural precursor cells (NPCs) were labeled with ferucarbotran and Synomag-D70, respectively. Cells were injected at different doses into immunodeficient Rag2−/− or mice with experimental autoimmune encephalomyelitis (EA) by either intra-arterial (IA) or intravenous (IV) injection. Dynamic and longitudinal Momentum MPI scans were performed to assess whole-body distribution and organ-level cell quantification, using labeled cell fiducial-based calibration for standardization. Bruker vertical 17.6T MRI and IVIS/Spectrum CT were used for high resolution imaging and anatomical referencing, respectively, with the imaging data validated using histological assessment.

At 30 min post-IV injection cells accumulated within the lungs, with negligible signal in liver and brain, indicating pulmonary entrapment. In contrast, IA injection revealed cell localization in the brain, lungs, and liver. After 1 day, IV-injected cells completely redistributed to the liver, while IA-injected cells persisted in both brain and liver without lung signal. The number of cells at 30 min post-IA injection was calculated to be 99,937±10,392 for the lung/liver and 27,500±2,240 cells for the brain. These total numbers of ~125,000 cells closely equals the amount of 120,000 injected cells. MPI scans of the brain revealed hot spots that overlapped with the MRI hypointensities. Histological Prussian blue staining further confirmed the presence of SPIO-labeled hMSCs. Anti-human nuclear antigen (HuNa) staining revealed that the iron-loaded cells contained human nuclei, confirming they were indeed the hMSCs that were injected, corroborating the MRI/MPI findings. To compare the dependence of the whole body biodistribution on cell size, we performed longitudinal MPI cytometry of 120,000 hMSCs (~25 µm) or 960,000 NPCs (~10 µm), IA-injected using four incremental injections. A total of 22,569±1,805 hMSCs localized in the brain at early time points, with 112,808±10,600 cells in the liver and lung, yielding a (lung+liver)/brain ratio of ~5. In contrast, for hNPCs these numbers were 74,240±6,854 for the brain and 474,580±39,094 for the lung and liver, i.e., a (lung+liver)/brain ratio of ~6.5, i.e. ~30% higher than the corresponding ratio observed for hMSCs. Using EAE as an inflammatory disease model for multiple sclerosis, 500,000 hMSCs were injected IV. Cells were initially retained in the lung and liver but within hours, distinct MPI signal emerged in the spleen (~12% of injected cells), lymphoid tissue where peripheral immunomodulation by therapeutic hMSCs is known to occur.

Our studies establish MPI as a robust in vivo cytometry platform capable of whole-body, dynamic, and organ-specific quantification of SPIO-labeled cells, while MRI adds high resolution soft-tissue contrast for validating localization in the brain and other organs. This bimodal magnetic imaging approach can inform on optimal dosing, timing, and delivery strategies for stem cell therapy, while being able to correlate variabilities in therapeutic outcome to quantitative differences in organ biodistribution. To the best of our knowledge, this study also represents the first in vivo visualization of splenic localization of hMSCs in EAE mice following IV delivery.

Integrating MPI cytometry with cell therapy may aid in further optimization of the route, dose, and frequency of cell administration.  
Ali SHAKERI-ZADEH , Shreyas KUDDANNAYA , Chengyan CHU , Kritika SOOD , Asif ITOO , Cristina ZIVKO , Aline THOMAS , Vasiliki MAHAIRAKI , Piotr WALCZAK , Jeff BULTE (Baltimore, USA)
14:15 - 15:00 Visit posters PG163-PG177.
Sala d’Assaig

"Friday 02 October"

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E23
13:30 - 15:00

MIS-2
Emerging Imaging and Analysis Methods of the Brain’s Angioarchitecture

Moderators: Roy HAAST (PhD) (Moderator, Marseille, France), Dimo IVANOV
13:30 - 13:52 Mapping the Human Venous Angioarchitecture at the Mesoscopic Scale. Omer Faruk GULBAN (Researcher) (Keynote Speaker, Maastricht, The Netherlands)
13:52 - 14:14 Mapping the Human Arterial Angioarchitecture at the Mesoscopic Scale. Hendrik MATTERN (Jun.-Prof.) (Keynote Speaker, Magdeburg, Germany)
14:14 - 14:36 Enhancing fMRI Specificity to Neuronal Activity using VASO and Capillary Blood Volume Imaging. Khazar AHMADI (Keynote Speaker, Germany)
14:36 - 14:58 Assessing the Influence of the Vascular Organization on BOLD Signals. Natalia PETRIDOU (Keynote Speaker, The Netherlands)
Sala 1

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I22
13:30 - 14:15

Poster 6
FT6 Relaxometry

13:30 - 14:15 #54208 - P316 To tilt or not to tilt: Assessing the impact of physical head misalignment on orientation-dependence of MRI parameters.
P316 To tilt or not to tilt: Assessing the impact of physical head misalignment on orientation-dependence of MRI parameters.

The microstructural architecture of brain white matter introduces a pronounced orientation dependence in quantitative MRI parameters [1]. Transverse relaxation rates, specifically R2* and R2′, as well as quantitative susceptibility mapping (χ) exhibit a well-characterized macroscopic angular dependence relative to the main magnetic field (B0​) [2,3]. In clinical settings and multi-center studies, inconsistent patient positioning alters bulk head orientation, potentially confounding the reliable characterization of these orientation-dependent characteristics. Tiltable radiofrequency receive coils enable the physical manipulation of head positioning in vivo to systematically investigate these effects [1]. This study investigates the robustness of orientation-dependent relaxometry and susceptibility parameters under varying degrees of head tilt.

Data were acquired from three healthy volunteers (#1: female aged 36 years, #2: male aged 40 years, #3: male aged 22 years) on a 3 T MRI scanner (MAGNETOM Vida, Siemens Healthineers) using a 20-channel tiltable head coil, allowing for head tilts of 0°, 9°, and 18° relative to B0. The protocol consisted of a multi-shell DWI sequence (b-values: 0, 1000, 2000 s/mm2, 30 directions, TE = 100 ms, TR = 5000 ms, 2 mm isotropic resolution) including reverse phase-encoded images for b= 0 s/mm2, an MP2RAGE sequence (TE = 2.98 ms, TR = 5000 ms, flip angles = 4 and 5°, 1 mm3 isotropic resolution), a turbo spin echo sequence (TE = 10 and 11 ms, TR = 5890 ms, 1x1x2 mm3 resolution) and a gradient echo sequence (9 TEs = 2.6, 6.1, 9.6, 13.1, 16.6, 10.1, 23.6, 27.1 and 30.6 ms, TR = 35 ms, 1 mm3 isotropic resolution). Quantitative relaxometry (R1​, R2, R2*​, R2′) and susceptibility (χ) parameters were calculated for subsets of 2 to 3 subjects per parameter. The angle θ between B0 and the first eigenvector was determined in 5° bins. The analysis was restricted to representative white matter tracts [4]: whole white matter (WM) as a global baseline, splenium of corpus callosum (CC), corticospinal tract (CST) and superior longitudinal fasciculus (SLF) (Figure 1). To quantify orientation dependence, the absolute anisotropy was calculated for each tract as the difference between maximum and minimum values across all orientation bins.

Visual inspection of the orientation dependence (Figures 2 and 3) revealed distinct behaviors between the evaluated parameters that were consistently maintained across all head tilts. R2*, R2 and R2′ exhibited the expected sinusoidal orientation dependence (Figure 2). In contrast, R1 displayed a weaker angular response and a systematic upward shift correlating with head tilt, while χ showed highly tract-dependent complexity (Figure 3). Importantly, while absolute values fluctuated as seen in R1, altering the head tilts up to 18° did not systematically bias or distort the underlying angular shapes of any investigated parameter. Quantitative analysis of the absolute anisotropy confirmed these visual findings (Table 1). R2* and R2’ consistently exhibited a pronounced magnitude of absolute anisotropy across all tracts. While tilting the head caused slight fluctuations in the absolute anisotropy, the characteristic shape of the curves remained intact. Furthermore, the inherent inter-subject microstructural variance mainly matched or exceeded the intra-subject tilt-induced variance.

This study demonstrates that orientation-dependent relaxometry and susceptibility parameters are robust to physical head misalignment. The intra-subject fluctuations and the systematic R1 offsets were likely driven by uncorrected macroscopic B0 gradients from absent shimming at 9° and 18° tilts, position-dependent B1+ transmit field inhomogeneities as well as noise amplification in sparsely populated low-angle bins, rather than major changes to the underlying characteristic angular shapes [1,2,5]. The inter-subject variance may be due to age-related microstructural differences [6]. Ultimately, the orientation-dependent parameters demonstrated strong resilience to both geometric rotation and suboptimal shimming. This was further supported by highly stable global and tract-specific voxel distributions across all metrics, confirming that head tilt does not introduce systematic whole-brain measurement biases.

Provided the local fiber-to-field angle is accounted for, physical head rotation does not fundamentally compromise the characterization of the underlying orientation-dependence. This robustness supports the feasibility of multiparametric MRI mapping in clinical or multi-site trials where strict patient head alignment can not be guaranteed.
Melanie BAUER (Innsbruck, Austria) , Elke R. GIZEWSKI , Christoph BIRKL
13:30 - 14:15 #54226 - P317 Interplay between segmentation and quantification in quantitative magnetic resonance imaging.
P317 Interplay between segmentation and quantification in quantitative magnetic resonance imaging.

Region segmentation is a critical part of MRI data processing. In quantitative MRI (qMRI) and particularly in ultra-high field (UHF) imaging, segmentation plays a crucial role in enabling the characterization of tissue microstructure in small brain regions. A challenge arises as the same quantitative values used in segmentation are subsequently analyzed within segmented regions to quantify microstructural tissue properties [1]. This creates a coupling, where regional quantitative values influence segmentation outcomes, while segmentation can influence the derived quantitative measures. A critical question is then, how large is this interplay between quantification and segmentation?

To provide a measurable estimate of the influence of using qMRI maps for segmentation on the subsequently extracted median quantitative values, we have used two UHF multiparameter mapping (MPM) datasets acquired at GIGA-CRC Human Imaging with a 7T Terra scanner. The two datasets: sTx-MPM (85 participants) and pTx-MPM (50 participants) were acquired using two slightly different protocols, both including three (T1-, PD-, and MT-weighted) whole-brain 3D FLASH-based multi-echo sequences with isotropic resolution of 0.6 mm, six echoes for PDw and T1w and four echoes for MTw. Two major differences between MPM acquisitions comprised: first, using 1Tx/32Rx Nova Medical coil for sTx-MPM, and 8Tx/32Rx Nova Medical coil with k-t points excitation for pTx-MPM, and second, using SE-STE-EPI based B1+ mapping for sTx-MPM, and AFI-based one for pTx-MPM. Full description of acquisition parameters is available elsewhere [2]. The magnitude images were denoised with LCPCA-based algorithm [3]; then quantitative maps (R1, R2*, and PD) were created using hMRI toolbox (0.6.1) [4] and subjected to nonlinear transformation into MNI space (ANTsPy 0.4.2) matching the space of MASSP prior labels. The transformed qMRI maps were used in MASSP segmentation [5] to provide masks of 31 subcortical structures in left and right hemispheres. This intertwined quantitative values with segmentation, as MASSP uses both prior label maps, and quantitative maps to delineate structures. Alternatively (Fig.1), the same transformed maps were used with MASSP prior labels for segmentation in an atlas-based manner, thus disentangling the effects of segmentation and quantification (except for the coupling previously introduced at the MNI coregistration step). Median values of R1 and R2* were calculated for each ROI from the MASSP segmentation and from the MASSP-atlas based segmentation after pooling values from left and right ROIs. Two-way mixed effects single-rater type [6] Intraclass Correlation Coefficients (ICC) were calculated for the two segmentation types to assess the consistency of relaxation rate measurements. The ICC significance and confidence intervals were assessed with a Bonferroni-corrected (for 14 ROIs and 2 metrics tested) p-value threshold of 0.05. Mean relative difference was calculated for each dataset (sTx-MPM and pTx-MPM) and for each ROI similarly to Bland-Altman approach as the averaged ratio of difference between two measurements to the mean of two measurements. The latter was compared to the ratio of difference between protocol-specific means to mean of protocol-specific means.

The median values of R1 and R2* extracted from two types of segmentations were highly consistent. All the calculated ICCs significantly differed from zero with the ICC-related p-value lower than Bonferroni-corrected 0.05 threshold. The estimated ICCs ranged from 0.839 to 0.996 for R1 (Fig.2,A) and from 0.764 to 0.993 for R2* (Fig.2,B). No direct correlations between ICC and structure volume were observed. The average segmentation-related difference in pTx-MPM protocol varied from 0.02% to 9.56% for R1 (Fig.3,A), and from 0.83% to 14.89% for R2* (Fig.3,B). Similar difference in sTx-MPM varied from 0.03% to 15.34% for R1 and from 0.86% to 20.98% for R2* (Fig. 3). At the same time, the difference between sTx-MPM means and pTx-MPM means in atlas-based segmentation varied from 13.79% to 25.62% for R1, and from 1.99% to 11.94% for R2* (Fig.3).

The high ICCs obtained for all the ROIs and metrics indicate the robustness of the selected segmentation method [5] to changes in the quantitative values (Fig.4). For median regional R1 values the impact of protocol-dependent qMRI values is for most ROI much larger than the impact of segmentation, as indicated by the relative protocol- and segmentation-related differences in qMRI values. Conversely, the protocol-dependency of R2* values is generally small and the impact of protocol appears comparable to the impact of segmentation.

Automatic segmentation of subcortical structures making use of the quantitative values has a negligible effect on the resulting median values of quantitative metrics in the selected ROIs. A much higher impact is exerted by the differences in the imaging protocol. Support: EU JPND, FNRS, ULiège, FEDER, Stop-Alzheimer Foundation
Mikhail ZUBKOV (Liege, Belgium) , Kerrin PINE , Bazin PIERRE-LOUIS , Kuegler NIKLAS , Puneet TALWAR , Nasrin MORTAZAVI , Solène DAUBY , Chloé GERON , Elise BECKERS , Laurent LAMALLE , Christophe PHILLIPS , Fabienne COLLETTE , Pierre MAQUET , Emilie LOMMERS , Anneke ALKEMADE , Nikolaus WEISKOPF , Gilles VANDEWALLE , Evgeniya KIRILINA
13:30 - 14:15 #54413 - P318 Simultaneous morphologic imaging and quantitative T2-mapping using MIXTURE: a sequence optimization study using a knee-coil-compatible NIST-calibrated quantitative MRI phantom insert.
P318 Simultaneous morphologic imaging and quantitative T2-mapping using MIXTURE: a sequence optimization study using a knee-coil-compatible NIST-calibrated quantitative MRI phantom insert.

Supplementing routine knee MRI with T2 mapping improved the detection of cartilage lesions and early cartilage degeneration [1]. Recently, Multi-Interleaved X-prepared Turbo Spin-Echo with IntUitive RElaxometry (MIXTURE) sequences have been introduced for simultaneous morphologic and quantitative joint imaging [2,3]. MIXTURE employs a 3D turbo-spin echo (TSE) readout with a variable refocusing angle, which can be combined with different preparation modules. We have previously realized a MIXTURE sequence for knee imaging (hereafter referred to as MIXTURE-Ref sequence) that interleaved fat-saturated (FS) 3D TSE readouts without T2-preparation and T2-prepared, non-FS 3D TSE readouts [4,5], yielding whole-joint proton density (PD)-weighted FS and T2-weighted images. These enabled voxel-wise two-point T2 calculations. While the diagnostic quality of PD-weighted images has been investigated, an optimization study regarding T2-mapping has not yet been performed. Ideally, this requires a calibrated phantom that fits into a knee coil. Hence, we used a commercially available phantom insert for knee imaging and investigated the influence of different sequence parameters on T2 mapping accuracy and the MIXTURE acquisition time (TA).

A knee phantom was obtained by mounting a commercially available phantom insert (Caliber MRI, Essential Prostate Phantom) into an acrylic glass tube (Fig.1(a)). The phantom insert contains a T2 plate comprising seven vials filled with manganese chloride in different concentrations, for which National Institute of Standards and Technology (NIST)-calibrated reference values are available between 16 and 26 °C, and an integrated liquid crystal thermometer (LCT). Prior to measurements, the phantom rested in the MRI room for more than 24 hours. MRI was performed at 3 T (Elition X, Philips) using a T/R knee coil. The MIXTURE-Ref sequence was acquired in the sagittal orientation, using two T2-preparations of 0 and 50ms (i.e., nTE=2, deltaTE=50ms), a TR of 1200ms, a compressed SENSE (CS) factor of 4.5, one signal average (NSA), and the above-mentioned FS-noFS pattern for fat-saturation. Afterwards, one of these scan parameters was systematically varied at a time. For context, a clinically available 2D multi-echo spin-echo (MESE) T2-mapping sequence was performed using matched in-plane geometry. Finally, the MIXTURE-Ref sequence was repeated. All T2 maps were reconstructed on the scanner by mono-exponential fitting. Fig.2 lists all scan parameters. Phantom vials were segmented using the Segment Anything Model 1 (Meta AI [6], Fig.1(b)). Within the central slice of each segmented T2 vial, mean values and standard deviations were calculated. Nominal T2 values at 22 °C were used, as the LCT showed temperatures >21 °C and <23 °C over the measurement series. For each sequence, the mean absolute percentage error (MAPE, Eq.1) was calculated, and TA was noted. We defined an exploratory efficiency factor (EF, Eq.2) to identify which sequence provides the best compromise between T2 accuracy and scan time.

Fig.3 shows the measured T2 values. Nearly all MIXTURE sequences and MESE overestimated the nominal T2 values, with MAPE of 0.1 or higher. Increasing nTE or NSA, or decreasing the CS factor reduced the MAPE, but at the cost of an increased TA (Fig.4a). MESE had the longest TA and a high MAPE of 0.29 (Fig.4b). The MIXTURE sequence with nTE=4 and the one with a noFS-FS fat saturation pattern showed the best EF (Fig.4c), but only the latter had a clinically acceptable scan time below 5 minutes. MESE had the lowest EF; moreover, it covered only 11 sagittal slices as compared to 43 slices for MIXTURE. The repeated MIXTURE-Ref acquisition showed good repeatability, with a mean absolute percentage difference of 3.5% between the measurements (Fig.3c).

The MIXTURE sequences under investigation were subject to variable degrees of T2 overestimation. However, this was similar to or less than that of MESE. In comparison, MIXTURE uses fewer T2-preparation times to encode the exponential decay, which makes it more vulnerable to noise. This is corroborated by the MAPE reduction with increased nTE, increased NSA, or decreased CS. Interestingly, the fat saturation pattern also influenced the T2 values, which may be due to magnetization transfer. Adapting the phantom insert for a knee coil may hold value beyond T2-mapping reference studies.

The adapted NIST-calibrated phantom insert enabled temperature-monitored, knee-coil-compatible assessment of MIXTURE T2 mapping. All investigated MIXTURE variants showed sequence-dependent T2 overestimation, but selected parameter settings reduced this bias while maintaining acquisition times below five minutes and substantially larger slice coverage than the 2D MESE comparator. These results support further optimization and clinical evaluation of MIXTURE as a time-efficient approach for combined morphologic knee MRI and quantitative T2 mapping, provided sequence-specific T2-bias is accounted for.
Teresa LEMAINQUE (Aachen, Germany) , Yannic SOMMER , Shuo ZHANG , Axel HONNÉ , Christiane KUHL , Daniel TRUHN , Sven NEBELUNG
13:30 - 14:15 #54350 - P319 Impact of echo number reduction on magnetic susceptibility source separation and phenotyping in multiple sclerosis lesions.
P319 Impact of echo number reduction on magnetic susceptibility source separation and phenotyping in multiple sclerosis lesions.

Quantitative Susceptibility Mapping (QSM) combined with advanced source susceptibility separation (x-separation) provides a powerful framework for disentangling paramagnetic (e.g. iron) and diamagnetic (e.g. myelin) components [1]. While the recent ISMRM consensus recommends multi-echo GRE sequences to capture robust signal decay curves required for precise susceptibility mapping [2], many retrospective clinical and longitudinal datasets include GRE acquisitions with a lower number of echoes, potentially compromising valuable insights into microstructural composition [3]. We aimed to evaluate the impact of echo reduction in susceptibility maps across Multiple Sclerosis (MS) lesions, and subsequently perform MS lesion phenotyping according to their x-separation values.

Standard 5-echo acquisitions (GRE5: 7.62, 12.78, 17.94, 23.10, 28.26 ms) were obtained from 50 people with MS (PwMS). To guarantee spatial pairing, 2-echo data were generated by extracting the first and last echoes (GRE2). For both pipelines, QSM (derived from phase data via standard unwrapping and background field removal) and R2∗ maps (derived from magnitude data) were combined using x-separation to estimate paramagnetic (x-para) and diamagnetic (x-dia) source distributions. Preprocessing included skull-stripping via SynthStrip and FLAIR-to-T1w co-registration [4]. MS lesions were segmented using LST-AI [5], with lesions under 27 mm³ excluded. To ensure accurate anatomical parcellation, lesion regions were inpainted on the T1w images before processing with “mri_super_synth” for whole-brain parcellation [6, 7], which was also used to extract Normal Appearing White Matter (NAWM) references. Lesion masks were adjusted to the native QSM space using ANTs registration and were eroded using a 2D kernel to approximate the assessment of lesion core and edge regions. Mean QSM, x-para, and x-dia components were extracted from the whole lesion, core, edge and NAWM (Figure 1). Differences and agreement between the GRE5 and GRE2 pipelines were assessed across lesion regions using paired statistical tests and Bland–Altman plots. Unsupervised K-Means clustering was applied to assign lesion phenotypes based on the decomposed x-para and x-dia values [8]. Finally, a Linear Mixed Effects Model (LMM) was employed to assess whether lesion volume significantly differed between the surrogate MS lesion subtypes.

The comparative analysis revealed no statistically significant difference between the GRE5 and GRE2 in QSM values in all lesional regions. Furthermore, there was no significant difference for the separated x-para and x-dia within lesion cores. However, highly significant statistical differences were observed in the separated x-para and x-dia across whole MS lesion and lesion edges, with GRE5 yielding greater absolute values than GRE2 (p < 0.001) (Figures 2 and 3). Importantly, while the GRE5 maintained a clear differentiation between the higher absolute x-para and x-dia values observed in Normal Appearing White Matter (NAWM) and the demyelinated lesions, the GRE2 systematically underestimated these measurements, resulting in a critical loss of contrast between NAWM and lesional tissues (Figure 2). By decomposing x-separation, we successfully identified three distinct phenotypes using GRE5 (Prediction Strength: 0.766): Type 1 lesions (N=346) exhibited the lowest x-para but preserved x-dia signal; Type 2 lesions (N=124) were defined by the highest x-para and lowest x-dia, and Type 3 lesions (N=459) exhibited near-average x-para and x-dia levels (Figure 4). Furthermore, LMM volumetric analysis of 929 lesions across 50 subjects revealed no statistically significant volume differences across these MS lesion profiles.

The analysis demonstrates that while GRE2 adequately captures QSM susceptibility measures, it presents altered x-separation maps compared to the GRE5. The x-para and x-dia demonstrated high sensitivity, as the absolute values in GRE5 are significantly greater than those in GRE2 and appropriately increased compared to the NAWM, demonstrating the superior feasibility of the GRE5 in capturing these susceptibility sources. Furthermore, the GRE5 x-separation data identified distinctive MS lesion phenotypes by aligning with known MS histopathology. It successfully differentiates preserved diamagnetic signals (Type 1) from highly destructive paramagnetic lesions defined by profound diamagnetic alteration and severe paramagnetic activity (Type 2), and near-average inactive lesions (Type 3).

Accelerating QSM protocols to two echoes introduces systematic bias into magnetic susceptibility source separation, compromising the microstructural specification in MS lesions. GRE5 remains essential for accurate MS lesion phenotyping and maintaining fundamental contrast with NAWM, demonstrating strong potential as a sequence-dependent biomarker for precisely capturing x-separation properties.
Martinez-Heras ELOY (Barcelona, Spain) , Alberich MANEL , Shin HYEONG-GEOL , Sampedro Santalo FREDERIC , G-Guzman ELVIRA , Neus MONGAY-OCHOA , Jaume SASTRE-GARRIGA , Rovira ÀLEX , Deborah PARETO
13:30 - 14:15 #54426 - P320 Standardised Follow-up of MS Lesions using Whole Head Enhanced Susceptibility Mapping from Gradient-Echo Scans.
P320 Standardised Follow-up of MS Lesions using Whole Head Enhanced Susceptibility Mapping from Gradient-Echo Scans.

MRI is central for the diagnostic and monitoring of multiple sclerosis (MS) by detecting lesion type, location, and evolution. Since the 2024 McDonald 1 revisions, there is a need for enhanced visualisation and quantification of susceptibility-based imaging biomarkers such as the paramagnetic rim lesion and the central vein sign. Despite qualitative clinical techniques such as SWI 2 and filtered phase imaging 3, quantitative research approaches such as QSM 4, which may bring objectivity, are still suboptimal in terms of image quality and spatial coverage. Here, a new method is shown to fully exploit magnitude and phase data in gradient-echo scans providing clinically robust whole-head susceptibility qualitative and quantitative contrasts.

A retrospective multicenter study (France, Belgium, USA) was conducted using 3D multi-echo GRE sequences (Table 1). Data included 5 healthy controls (female and male, 40–75 years) and 4 female MS patients (40–60 years, stable disease), followed over 6–40 months with 2–6 repeated scans. Imaging was performed across multiple MRI systems (1.5T, 3T, and 7T) and manufacturers (Siemens, Philips, GE), with the optimization phase conducted in healthy controls to refine processing methods. The optimized method was then applied to MS patients, with the addition of FLAIR imaging to provide lesion reference and characterization. Magnitude data were corrected to isolate T2* and anatomical contrasts, while phase data were processed with a dedicated and robust strategy to provide whole-head enhanced susceptibility contrasts. Phase unwrapping and background field removal were performed using a Laplacian-based approach. Magnetic susceptibility was then estimated using a constrained least-squares (maximum likelihood) formulation with zeroth- and second-order priors and will be referred as to Enhanced Susceptibility Mapping (ESM).

The method ensures robustness and reproducibility across MRI manufacturers and field strengths (figure 1), enabling enhanced susceptibility imaging with extended spatial coverage in clinical settings. It is compatible with multi-echo acquisitions and further produces co-localised R2*, T2*-weighted (corrected from T1 and bias field), anatomical with attenuated CSF signals, enhanced susceptibility mapping without anatomical masking (figure 2). It is resilient to air–bone interfaces and improves accuracy and reproducibility. Key MS biomarkers, including paramagnetic rims and central veins sign, are reliably detected, along with venous structures and calcifications. Longitudinal analysis confirms reproducibility and enables detailed visualisation of brain tissues and lesion evolution (figure 3).

This enhanced susceptibility mapping (ESM) approach enables whole-head exploration of susceptibility quantification. ESM supports robust tissue characterisation without anatomic masking, discrimination of para- and diamagnetic sources, and longitudinal assessment of lesion progression in MS. From multi-GRE data, it was further generated multiple quantitative maps and contrasts (R2*, T2* weighted corrected from T1 and bias field, anatomical information with attenuated CSF signals) from a single acquisition, providing co-localised valuable magnitude-based images for radiological review.
Stephane ROCHE , Samira MCHINDA , Mathieu SANTIN , Chloé ANGELINI , Michel BOTTLAENDER , Vincent AUBOIROUX , Jolien VAN OPSTAL , Ronald PEETERS , Thomas TOURDIAS , Alexandre VIGNAUD , Ludovic DE ROCHEFORT (Marseille)
13:30 - 14:15 #54686 - P321 Under one minute NATIve QSM enables robust and reproducible subcortical iron mapping with strong clinical translation potential.
P321 Under one minute NATIve QSM enables robust and reproducible subcortical iron mapping with strong clinical translation potential.

Neurodegenerative disorders are a leading cause of dementia and are rapidly increasing worldwide, particularly in low- and middle-income countries such as Colombia (1); Parkinson’s disease (PD), the second most common disorder, is characterized by iron accumulation in the substantia nigra that parallels dopaminergic neurodegeneration (2). Quantitative Susceptibility Mapping (QSM) enables in vivo assessment of brain iron (3) but remains limited in clinical practice due to long acquisition times and motion sensitivity (4), motivating the development of ultra-fast approaches such as No Additional Time for Imaging or NATIve QSM (<1 min) (5), which aim to provide reliable iron mapping under realistic clinical conditions; here, we replicate and validate NATIve QSM against conventional 3D GRE QSM and evaluate its ability to detect differences between PD patients and healthy controls.

Twelve healthy participants (4F, 32.4 y) underwent both NATIve and 3D-GRE QSM for intra-subject comparison, while ten Parkinson’s disease patients (4F, 68.4 y) were scanned with NATIve only; additionally, five healthy participants were rescanned after one week to assess test–retest reliability. All data were acquired on a 3T Siemens Lumina scanner using a 20-channel head-neck coil. The NATIve protocol consisted of three orthogonal 2D SMS-EPI acquisitions (1×1×2.5 mm³, TR = 5.48 s, TE = 41 ms, GRAPPA R=2), complemented by a low-resolution 3D-GRE field map for distortion correction, while multi-echo 3D-GRE (FLASH) served as the reference standard. QSM reconstruction followed established pipelines (NATIve: FUGUE, Volgenmodel, ROMEO, RESHARP, STAR; GRE-QSM: Laplacian unwrapping, RESHARP, STAR). Map similarity was quantified using Pearson correlation (r) and regression slope; reliability was assessed using intraclass correlation (ICC). Analyses were performed in PD-relevant regions: basal ganglia, thalamus, substantia nigra (SN), limbic system, and cortex (GM: gray matter).

First, we compared our QSM with the original publication's maps. We observed a strong similarity between our and the reference group QSM maps for both sequences in the subcortex (Fig. 1A; Pearson r > 0.65, p<0.0001), but not in the cortex (r < 0.41, p<0.0001). Additionally, NATIve maps showed better agreement between sites than the FLASH for all subcortical structures, as reflected in the slope close to 1 in Fig. 1A (right). Second, we evaluated the similarity between our NATIve and conventional QSM FLASH maps and compared them with the reference publication's similarity values. Our NATIve and conventional QSM maps showed good agreement in the Basal Ganglia and Thalamus (Fig. 1B; r>0.54, slope>0.55, p<0.0001), but weak in the other structures (r<0.41, slope<0.32, p<0.0001). However, our overall similarity between sites was not significantly different, except for the slope of the SN (Fig. 1B, right; p<0.05, FDR-corrected). Third, we assessed test-retest reliability on NATIve scans acquired one week apart in the same participants. We observed moderate reliability in the SN (ICC > 0.5) and lower reliability in the other areas (ICC < 0.5), although the latter falls within the typical range for functional MRI (Fig. 1C). Finally, we evaluate the clinical relevance of the NATIve QSM maps by testing their ability to detect differences between PD and HC. We did not observe significant differences in any of the analyzed brain regions (Fig. 1D). Nevertheless, the SN shows higher QSM values in PD patients than in HC.

We successfully replicated the NATIve QSM protocol and observed a strong agreement with reference data in subcortical structures, achieving performance comparable to conventional GRE-QSM and offering improved consistency across different sites. However, the lower agreement in cortical regions is likely due to QSM's limitations in low-susceptibility tissues and to remaining methodological differences. The moderate test-retest reliability in the subcortex indicates that NATIve is robust in clinically relevant areas. Importantly, NATIve enables quantitative brain iron mapping in under 1 minute, significantly reducing motion sensitivity and patient burden, making it suitable for routine clinical MRI protocols, especially in resource-limited settings. While there were no significant differences between Parkinson’s disease patients and healthy controls, there was a trend towards increased susceptibility in the substantia nigra, consistent with known pathology (2). This lack of significance may stem from a small sample size, patient heterogeneity, and a limited number of age-matched controls, highlighting the need for larger, age-balanced cohorts to fully establish the clinical sensitivity of NATIve QSM.

NATIve QSM provides a fast, reproducible, and clinically feasible approach for quantitative iron mapping, with clear potential to support the assessment of neurodegenerative diseases in routine practice.
Jazmin Ximena SUAREZ REVELO (Medellin, Colombia) , Beata BACHRATA , Daniel Felipe TAMAYO CORTES , Yesika Alexandra AGUDELO LONDOÑO , Jhon Wilmer PINO ROMAN , Jorge Mario VELEZ ARANGO , Simon Daniel ROBINSON , Gabriel CASTRILLON
13:30 - 14:15 #54283 - P322 From Structural MRI to Quantitative Susceptibility Maps: A 3D Patch-Based Conditional GAN for Multiple Sclerosis Biomarker Synthesis.
P322 From Structural MRI to Quantitative Susceptibility Maps: A 3D Patch-Based Conditional GAN for Multiple Sclerosis Biomarker Synthesis.

Quantitative susceptibility mapping (QSM) is a specialised MRI modality enabling in vivo detection and quantification of tissue iron, making it valuable in multiple sclerosis (MS) for characterising paramagnetic rim lesions (PRLs) [1], which are markers of chronic active inflammation linked to disability progression independent of relapse activity [2]. PRLs are more reliably detectable on sequences such as multi-echo gradient-echo, absent from most clinical and retrospective MS datasets due to acquisition complexity and time constraints. To address this, we developed and validated a 3D patch-based conditional generative adversarial network (cGAN) capable of synthesising full QSM volumes directly from routine T1-weighted and T2-FLAIR structural MRI combined with tissue segmentation priors, requiring no phase-derived input, and explored synthetic susceptibility features as inputs to treatment response prediction models.

A 3D Pix2Pix-style cGAN was trained on a longitudinal cohort of 79 participants (148 scans, 101 patient and 47 control visits) acquired at CEMCAT/Vall d'Hebron Hospital on a 3T Siemens MAGNETOM scanner. The generator consisted of a 3D Res-U-Net with five input channels (T1, T2-FLAIR, and one-hot encoded white matter [WM]/grey matter [GM]/cerebrospinal fluid [CSF] tissue segmentation priors) and a single QSM output channel, operating on overlapping 32³ voxel patches with 50% stride. Skip connections preserved anatomical detail across four encoder-decoder scales. The discriminator was a 3D PatchGAN with a 70³ receptive field. Training followed a two-phase schedule: a 10-epoch L1-only warm-up, followed by 20 epochs of combined hinge adversarial and L1 loss with WGAN-GP regularisation. Separate models were trained with and without tissue priors to quantify their contribution. Performance was assessed globally using SSIM, PSNR, NRMSE, and voxel-wise Pearson correlation, and regionally across twelve subcortical ROIs. The trained cGAN with priors was subsequently applied to a Barcelona MS clinical cohort (2009–2025) lacking real QSM, and extracted whole-brain and GM susceptibility features (mean, median, standard deviation, P5, P95) were appended to baseline clinical and MRI predictors in XGBoost classifiers for two-year relapse prediction, evaluated in high-efficacy DMTs [3].

The 3D cGAN produced visually plausible synthetic QSM maps capturing broad tissue contrast and overall susceptibility distributions (Figure 2). Both models achieved comparable global performance (PSNR≈23.8 dB, SSIM≈0.87). Tissue priors conferred the greatest benefit regionally: systematic underestimation in iron-rich deep GM nuclei was substantially reduced, with pallidum bias decreasing by approximately 40% bilaterally and similar improvements across putamen and caudate. The model without priors achieved marginally higher voxel-wise Pearson r in most subcortical regions (e.g. right putamen: 0.83 vs 0.81, Table 1), suggesting better preservation of relative spatial patterns at the cost of greater scaling error. For the treatment response application (N=105, mean age = 43.6, 59% female), synthetic QSM was generated using the prior-conditioned model, as its reduced regional bias makes it preferable for absolute susceptibility quantification. 97% of synthetic maps were rated anatomically plausible and susceptibility statistics followed the expected paramagnetic hierarchy (Figure 3). Susceptibility features were successfully extracted from whole-brain and GM masks, and its addition to the to baseline clinical and MRI biomarkers improved prediction (ΔAUC=0.37).

Tissue priors offer a meaningful trade-off: the prior-conditioned model is preferable for absolute iron quantification, while the unconditioned model may better suit spatial pattern detection tasks such as rim lesion localisation. These findings reflect the inherent difficulty of recovering fine susceptibility contrast from conventional MRI alone. In the treatment response application, gains are biologically plausible: synthetic QSM features may reflect chronic active inflammation sustained by iron-laden microglia that persists despite potent therapy. This could explain improved relapse prediction under high-efficacy DMTs. However, the small matched cohort size (105 patients) limits interpretability, with bootstrap 95% CIs spanning 0.5.

This work demonstrates that QSM can be synthesised from routine T1&T2-FLAIR MRI with plausible quantitative accuracy, and that synthetic susceptibility features show early promise as complements to conventional predictors in treatment response modelling. Limitations include a small single-centre training cohort, absence of systematic hyperparameter optimisation, automated tissue priors without manual correction, and insufficient cohort overlap for robust ML evaluation. Future work should focus on multi-site training, physics-informed loss functions, and prospective validation in larger cohorts.
Ariadna MASOT-LLIMA (Barcelona, Spain) , Juan Pablo BETANCUR-RENGIFO , Emma BIONDETTI , Francesco GRUSSU , Francisco APARICIO-SERRANO , Jordina BELTRÁN , Daniel HERNÁNDEZ , René CARVAJAL , Agustín PAPPOLLA , Baris KANBER , Susana OTERO-ROMERO , Álvaro COBO-CALVO , Manel ALBERICH , Maria Jesús ARÉVALO , Georgina ARRAMBIDE , Cristina AUGER , Joaquín CASTILLO , Manuel COMABELLA , Ingrid GALÁN , Carlos NOS , Jordi RÍO , Breogán RODRÍGUEZ-ACEVEDO , Jaume SASTRE-GARRIGA , Alex ROVIRA , Xavier MONTALBAN , Mar TINTORÉ , Deborah PARETO , Xavier LLADÓ , Carmen TUR
13:30 - 14:15 #54166 - P323 Advancing Susceptibility-Weighted Imaging with Fast Model-based Reconstruction.
P323 Advancing Susceptibility-Weighted Imaging with Fast Model-based Reconstruction.

Susceptibility-weighted imaging (SWI) is a widely-used clinical MRI modality which provides excellent visualization of venous structures, microbleeds, and other structures which produce strong signatures in the reconstructed image phase [1-2]. In addition to local tissue fields, harmonic and non-local magnetic field effects also contribute to the measured phase. High-pass filtering [3] of the phase provides a means of removing the non-local phase contributions, however it can fail in regions where the image phase is densely wrapped, leading to artifactual contrast in SWI. Methods for artifact mitigation are commonly applied as a post-processing step after image reconstruction. It has previously been shown that model-based image reconstruction operators which explicitly account for background off-resonance are capable of producing images with phase depicting only local tissue contributions, however these methods have been limited to 2D acquisitions [4]. Recently, an efficient method for generating arbitrary higher-order image reconstruction operators has been proposed (GHOST, currently under review), enabling computationally tractable model-based reconstruction of high-resolution 3D acquisitions [5]. In this work, we present the application of this operator generation framework to 3D multi-echo gradient echo image reconstruction and demonstrate its impact on susceptibility-weighted image quality.

A multi-echo gradient echo acquisition was acquired in a volunteer on a Philips MR7700 scanner with XP-2250 gradients at 1 mm x 1 mm x 1 mm isotropic resolution using a 32 channel head coil and compressed sensing acceleration factor of 4.5. Echo times were set at [4.5 ms, 9.8 ms, 15.1 ms and 20.4 ms]. Raw data and sensitivity maps were saved and exported at the console using GyroTools, and converted to MRD format using MRecon. An in-house pipeline written in the Julia language was used for iterative image reconstruction. Reconstruction was performed iteratively using ADMM using compressed sensing via L1-regularization of the wavelet basis. Background off-resonance estimation was performed by iterative refinement of an air and tissue mask followed by convolution with the dipole kernel to approximate the harmonic and non-local component of the field map generated from the first two echoes of the multi-echo acquisition [2]. A rank-15 model-based reconstruction operator including off-resonance effects was generated using an efficient turnstile sketching method in Julia, and implemented on the GPU. Image reconstruction without and with model-based reconstruction took approximately 90 and 400 seconds respectively. Susceptibility-weighted images constructed with and without GHOST model-based encoding operators were processed using standard techniques. The phase of each echo was homodyne filtered with a Hanning window of width 0.3, and converted into a phase mask [1]. Then, a susceptibility-weighted image was produced by taking the average of the last three echoes. A 6 slice (6 x 1 mm) sliding-window minimum intensity projection was computed along the foot-head direction, to produce a minimum intensity projection image.

Phase images reconstructed with and without model-based corrections are shown in Figures 1 and 2 for the last echo of the acquisition (TE = 20 ms, left and right) and the SWI (middle). The conventional reconstruction results in the presence of multiple phase wraps due to large background field inhomogeneities. The phase after homodyne filtering still exhibits phase wraps in areas of strong background inhomogeneities. These affect the reconstructed SWI (minimum intensity projection across 6 slices), in particular near the nasal sinus and the auditory canal. Reconstruction with GHOST takes the background field into account, resulting in a phase that exhibits mostly local changes due to tissue susceptibility. Filtering with the same homodyne filter properties results in high pass filtered phase images without residual phase wraps and reduced artifacts in the SWI.

While the present work demonstrates the effectiveness of off-resonance correction, other effects such as trajectory imperfections, higher-order field dynamics, eddy currents and small motion may be incorporated into the model-based reconstruction. Investigation into their effects on SWI and other gradient-echo contrasts is ongoing. It should be noted that the data were acquired as a test dataset for QSM with isotropic resolution, however it is recommended to acquire anisotropic voxels for improved visualization of microbleeds and veins [6].

The use of a model-based image reconstruction framework incorporating off-resonance was shown to mitigate non-local contributions to reconstructed image phase. The resulting reconstructed image phase contained demonstrably fewer phase wraps, and reduced homodyne filtering artifacts in regions of severe off-resonance, leading to reduced artifactual contrast in the susceptibility-weighted images.
Alexander JAFFRAY (Vancouver, Canada) , Julian KLOIBER , Jonathan DOUCETTE , Alexander RAUSCHER
13:30 - 14:15 #54507 - P324 Consensus-Aligned QSM Pipeline for Breast Microcalcification Differentiation: Phantom Validation of Hydroxyapatite & Calcium Oxalate Susceptibility Contrast at 3T.
P324 Consensus-Aligned QSM Pipeline for Breast Microcalcification Differentiation: Phantom Validation of Hydroxyapatite & Calcium Oxalate Susceptibility Contrast at 3T.

Microcalcifications are the primary mammographic indicator in 85–95% of ductal carcinoma in situ (DCIS) cases and are present in approximately 30–46% of invasive breast cancers [1], yet 70–80% of microcalcification-triggered biopsies prove benign [2]. Non-invasive compositional differentiation between calcium oxalate (CaOx, Type I, benign-associated) and hydroxyapatite (HA, Type II, malignancy-associated) could reduce unnecessary procedures. These minerals have distinct magnetic susceptibilities relative to water: approximately −5 to −7 ppm for HA versus 0 to −1 ppm for CaOx [3], a contrast exploitable by quantitative susceptibility mapping (QSM). However, standard QSM pipelines optimised for brain geometry require adaptation for focal diamagnetic sources in breast tissue, and no validated phantoms incorporating both calcification types exist. This study demonstrates QSM-based compositional differentiation of synthetic HA and CaOx microcalcifications at 3T using purpose-built combined phantoms and a consensus-aligned processing pipeline.

Phantom fabrication: Synthetic HA and CaOx particles were fabricated by compression granulation of reagent-grade powders (>99% purity) and sieve-selected to 1.0–2.0 mm size (mean equivalent diameter 1.8 ± 0.4 mm, n=5, optical microscopy). One HA and one CaOx particle were co-embedded in each 50 mL Falcon tube containing 2% alginate gel (BaCl₂-crosslinked; Fig. 1). Three gel environments were prepared: pure alginate (undoped baseline), adipose-mimicking, and FGT-mimicking [4], with n=4 replicate tubes per condition. Acquisition: Data were acquired on a 3T Siemens Prisma using a 64-channel head coil with a monopolar multi-echo GRE sequence (7 echoes, ΔTE = 4.25 ms, TR = 32 ms) at 0.70 mm and 0.86 mm isotropic resolution (TE₁ = 2.89/2.70 ms respectively). Processing: A custom Python pipeline was developed adapting ISMRM QSM consensus recommendations [5] for non-brain geometry (Fig. 2). Phase data were unwrapped using ROMEO [6] with second-echo template and global phase correction. Field maps were estimated via magnitude-weighted linear regression, with background fields removed using V-SHARP (radii 4–10 mm; 2 mm excluded to preserve microcalcification dipole fields). Susceptibility maps were reconstructed using TV-regularised ADMM dipole inversion (λ=0.002, μ=0.02, 150 iterations) with TKD warm-start (threshold 0.2). Magnitude-threshold masking with phase-quality refinement excluded unreliable voxels. Analysis: Susceptibility values (Δχ) were measured using automated spherical ROIs (2-voxel radius, centred on the susceptibility minimum), referenced to surrounding gel. Peak susceptibility (Δχpeak) was defined as the 5th percentile Δχ within the particle core. Detection required both |Δχpeak| exceeding 3× gel noise floor [7] (defined as gel ROI standard deviation) and the presence of a focal susceptibility minimum. Cohen's d quantified HA–CaOx separation [8]. Inter-phantom reproducibility (CV, n=4) was assessed.

HA particles were detected as focal diamagnetic sources in 18/24 tubes (Fig. 3). Detection was most reliable in adipose-mimicking gel (8/8 detected; Δχpeak = −0.41 ± 0.13 ppm at 0.70 mm, −0.39 ± 0.22 ppm at 0.86 mm) and pure alginate (7/8; −0.37 ± 0.07 ppm, −0.23 ± 0.08 ppm), with reduced sensitivity in FGT-mimicking gel (3/8; −0.19 ± 0.22 ppm, −0.12 ± 0.04 ppm). CaOx was undetectable in all tubes, with susceptibility values indistinguishable from surrounding gel (Fig. 4). Cohen's d for HA vs CaOx differentiation at 0.70 mm was large in adipose (d = 3.25) and alginate (d = 3.73) but negligible in FGT (d = 0.45). Inter-phantom reproducibility was highest in alginate (CV = 20%) and adipose (CV = 31%). Gel noise floor was approximately 0.02 ppm.

QSM at 3T provided categorical differentiation between HA and CaOx through selective HA detection rather than ratio-based quantification. CaOx's near-water susceptibility (Δχ ≈ 0 to −1 ppm) produces insufficient phase contrast at 3T for QSM reconstruction. Reduced HA sensitivity in FGT gel is attributed to lower SNR from dopant-induced T2* shortening. Higher resolution (0.70 mm) improved HA detection sensitivity and Δχpeak magnitude compared to 0.86 mm (acquisition times: 7:49 vs 8:21 min), with matched averaging (N=4) partially compensating for reduced per-voxel SNR. Measured Δχ values are systematically lower than literature due to V-SHARP mask erosion (~62% coverage) and partial volume effects (PVE). Particle size irregularity (1.8 ± 0.4 mm, aspect ratio ~1.6) introduces orientation-dependent PVE, contributing to inter-tube variability, though this morphology is representative of biological microcalcifications.

QSM at 3T enables binary differentiation of breast microcalcifications: HA is reliably detected in adipose and alginate environments while CaOx remains indistinguishable from gel baseline, providing a potential non-invasive marker for malignancy-associated calcifications.
Klara MIŠAK (London, United Kingdom) , Enrico DE VITA , Chris A. CLARK , Simon WALKER-SAMUEL , Matthew CASHMORE
13:30 - 14:15 #54516 - P325 Correcting for the transmit bias field in MP2RAGE-based T1 mapping: Double angle method vs. actual flip-angle imaging.
P325 Correcting for the transmit bias field in MP2RAGE-based T1 mapping: Double angle method vs. actual flip-angle imaging.

Magnetization-prepared two rapid acquisition gradient echo (MP2RAGE) is a popular MRI method to quantify the longitudinal T1 relaxation time in the brain and/or spinal cord [1-3], where it is applied, for example, in multiple sclerosis [4-6] and amyotrophic lateral sclerosis [6]. To perform accurate T1 mapping, MP2RAGE-derived parameter maps must be corrected for the transmit bias field B1+ [1], for which a variety of B1+ mapping approaches exist. The simplest and most widely available technique is the double angle method (DAM) [7], which estimates B1+ from the ratio of two 2D spin- (SE) or gradient-echo-based magnitude images acquired with flip angles [α;2α]. SE-based DAM is known to be highly sensitive to small variations in B1+ and mostly robust to T1-induced bias when implemented with an appropriate repetition time (TR ≥ 5T1) [7,8]. The actual flip-angle imaging (AFI) method [9] is another state-of-the-art magnitude-based technique that utilizes a 3D dual-TR pulsed steady-state acquisition. AFI is appreciated for its good anatomical coverage, reduced motion sensitivity, and strong acceleration potential [8,9,11]. This study directly compares B1+ mapping by resolution-matched DAM and AFI for transmit bias field correction in MP2RAGE-based T1 mapping of the brain and cervical spinal cord.

Six healthy subjects (24.7 ± 1.5 years) underwent MRI on a clinical 3T scanner (Ingenia Elition X, Philips, NL) with a 16-channel head/neck coil. The imaging protocol included MP2RAGE (similar to [3]) and B1+ mapping by 2D SE-based DAM and 3D AFI (see Fig. 1 for details and sequence parameters). DAM had an acquisition time of 1:57 min, while AFI required 3:27 min at the same 5 mm isotropic resolution. B1+ maps were automatically generated at the scanner console, coregistered to MP2RAGE data using SPM12 [12], and used to generate B1+-corrected T1 maps using pymp2rage [13]. Masks of cerebral and spinal cord grey and white matter (GM/WM), vertebral levels (C1-C7), and cerebrospinal fluid (CSF) were generated based on MP2RAGE data using SPM12 and SCT [14]. Regional variability in B1+ and corrected T1 was assessed by difference maps (ΔB1+ for DAM vs. AFI and ΔT1 for no vs. DAM-/AFI-based correction), volume-of-interest (VOI), and Bland-Altman analyses. Statistical evaluation used paired t-tests (p < 0.05).

B1+ (Fig. 2B) and ΔB1+ (DAM-AFI; Fig. 3A) maps show an increased regional variability for AFI with noticeably higher values in the center of the brain and upper spinal cord. Comparison of VOI-average B1+ (Fig. 3C/D) reveals DAM to yield systematically lower values than AFI across all VOIs, with the biggest differences in the spinal cord (~18%, p = 0.04). Effects of DAM- vs. AFI-based B1+ correction on T1 quantification are demonstrated in Fig. 4. DAM-based B1+ correction significantly lowers T1 values across all VOIs (-1.7 to -6% difference compared to no correction) and causes reductions in inter-subject and intra-VOI standard deviations in most VOIs, while AFI-based correction has an insignificant effect on mean values (-0.3 to -1.1%) but noticeably increases variability.

Both DAM- and AFI-based B1+ maps show the expected field distribution with higher B1+ in the center of the imaging field (Fig. 2B) [3,10,15-17]. AFI-based B1+ maps generally demonstrate a higher regional variability (Fig. 3A/4B), while maps from DAM appear smoother. The highest variability and the only significant difference in B1+ values can be observed in the spinal cord (Fig. 3C/D). However, this VOI likely suffers from strong partial volume effects due to the low spatial resolution of the B1+ maps. DAM-based B1+ correction has a significant effect on T1 values across all VOIs (Fig. 4D) that is quantitatively comparable to previous reports [10]. DAM-corrected T1 estimates are also closest to literature references employing MP2RAGE-based T1 mapping in the brain and cervical cord [1-3] and show a reduced variability. As a potential limitation for both methods, it is worth noting that our implementations of DAM and AFI use substantially larger flip angles to map B1+ than those employed by the MP2RAGE sequence, which could result in inaccuracies for low flip angle estimations [10,18]. Despite using a high acceleration factor (R = 5), AFI-based B1+ mapping, as originally implemented for the multi-parameter mapping protocol [11,19,20], still requires a substantially longer acquisition time. With respect to this issue, ultra-fast approaches, as suggested by [15,17,20,21], might be reasonable alternatives, especially for covering the larger field of view comprising the brain and cervical spinal cord.

This study demonstrates that the choice of B1+ mapping technique can have significant effects on T1 quantification by MP2RAGE. Based on our work, DAM was faster and more closely aligned with the literature than AFI. Notably, the differences between the techniques appear to be larger than previously reported [10,16], which requires further investigation.
Elisa SAKS (Munich, Germany) , Kilian WEISS , Stephan KACZMARZ , Benedikt WIESTLER , Jan S. KIRSCHKE , Christine PREIBISCH
13:30 - 14:15 #54532 - P326 Eclipse: EPG-coupled learning for inversion of phase-cycled steady-state encoding.
P326 Eclipse: EPG-coupled learning for inversion of phase-cycled steady-state encoding.

Phase-cycled balanced steady state free precession (pc-bSSFP) samples the complex bSSFP steady-state response under multiple RF phase increments. Because this response is sensitive to relaxation, off-resonance and flip-angle conditions, pc-bSSFP is an attractive candidate for rapid multiparametric MRI. Conventional ellipse-based approaches such as PLANET provide an elegant analytical framework for simultaneous T1, T2 and off-resonance estimation from phase-cycled bSSFP data (1). However, these approaches rely on idealized signal assumptions that may be challenged by realistic acquisition conditions, including B1 variations, slice-profile effects, transient steady-state preparation and deviations from the ideal single-pool bSSFP model. Recent work has introduced physics-informed neural estimation for pc-bSSFP relaxometry (2,3), but acquisition-specific forward modeling incorporating these effects remains an open challenge. We propose ECLIPSE, a physics-informed framework coupling Extended Phase Graph signal modeling with learning-based inversion of pc-bSSFP data.

In ECLIPSE, each acquisition was defined by protocol-specific sequence parameters u={TR, TE, α, Npc, Δϕ}. In the representative protocol, N_pc=8 phase-cycling states were acquired with RF increments of Δϕ=45°. Synthetic pc-bSSFP fingerprints were generated using an EPG forward model, in which configuration states are propagated through standard EPG operators (4). For 3D acquisitions, a zero-order single-pool steady-state bSSFP model was used. For 2D acquisitions, the model was extended with RF slice-profile averaging to account for through-slice flip-angle variations. Large acquisition-specific dictionaries were simulated over ranges of T1,T2,∆B0, and B1 scaling. A fully connected neural network (5×256 neurons) was trained on EPG-simulated fingerprints to estimate T1, T2 and flip-angle scaling from the real and imaginary components of the N_pc signals together with off-resonance and B1-related information when available. A physics-informed loss reconstructed the predicted pc-bSSFP signals through the EPG model and penalized discrepancy with the input fingerprint. ECLIPSE was evaluated on six ex vivo liver specimens with thermally ablated regions (3D, with vendor-provided B1-corrected T1 reference) and a 2D abdominal acquisition in a healthy volunteer.

ECLIPSE produced voxel-wise T1, T2, off-resonance and banding-free maps across all evaluated datasets. Across six ex vivo liver specimens, ECLIPSE better reproduced the vendor-reference T1 contrast between intact parenchyma and thermally ablated tissue in 5/6 cases, reducing mean absolute contrast error by 39% compared with PLANET (123 vs 200 ms) (Figure 2). In an illustrative case, central-ROI T1 was 1024 ms with ECLIPSE versus 857 ms with PLANET, against a reference of 1022 ms (Figure 1). The modularity of the EPG forward model was then demonstrated by incorporating RF slice-profile averaging for 2D acquisitions. Without this extension, liver T1 collapsed below 200 ms, a non-physical value reflecting the violation of the hard-pulse assumption inherent to PLANET and the zero-order EPG model. With slice-profile-aware training, ECLIPSE recovered physiologically plausible tissue contrast: mean ROI T1/T2 values were 664/23 ms in liver, 901/44 ms in small bowel and 621/23 ms in skeletal muscle, versus 134/22, 223/36 and 146/19 ms with PLANET, consistent with expected tissue hierarchy at 3T (Figure 3).

ECLIPSE replaces the geometric ellipse fit underlying PLANET with a forward-model-driven inversion, removing the need for closed-form signal assumptions that become unreliable when acquisition conditions deviate from the ideal steady-state model. A key advantage of the EPG-based approach is its modularity: acquisition-specific effects are incorporated directly into the forward simulation used for training, without modifying the inversion architecture. This was demonstrated here by adding RF slice-profile averaging for 2D data, correcting a five-fold T1 underestimation. The same principle extends to effects not addressed in this work, including transient preparation and magnetization transfer via EPG-X (5). Residual T1 underestimation in whole-liver and abdominal data, as well as T2 values below literature expectations, suggest that single-pool modelling does not capture all sources of bias, and further multi-organ, multi-field validation is required. Nonetheless, ECLIPSE provides a modular basis for advancing pc-bSSFP toward robust multiparametric quantification.

ECLIPSE improved T1 contrast preservation in ex vivo liver and recovered plausible tissue contrast in 2D abdominal imaging through acquisition-specific EPG forward modeling, demonstrating the value of a modular physics-informed framework for pc-bSSFP relaxometry.
Antoine KNEIB (Nancy) , Astrée LEMORE , Valérie LAURENT , Freddy ODILLE
13:30 - 14:15 #54529 - P327 Regional T1 and T2 Normative Z-Score Mapping Reveals Cortical and Subcortical Microstructural Abnormalities in Huntington’s Disease.
P327 Regional T1 and T2 Normative Z-Score Mapping Reveals Cortical and Subcortical Microstructural Abnormalities in Huntington’s Disease.

Huntington’s disease (HD) is an autosomal dominant neurodegenerative disorder, caused by expanded Cytosine-Adenine-Guanine (CAG) repeated mutations (>35 CAGs) in the huntingtin gene[1,2]. Although HD classically involves basal ganglia degeneration, growing neuroimaging and neuropathological evidence suggests that the disease extends beyond subcortical structures, affecting widespread cortical regions from early stages. In particular, post-mortem studies[3] have reported a distinct pattern of cortical atrophy, with the occipital cortex emerging as a site of early vulnerability. However, the in vivo microstructural correlates of this occipital involvement[4] remain poorly understood. In this study, we address this gap by applying a novel normative model based on regional T1 and T2 relaxometry to identify personalized microstructural alterations in HD patients. Owing to the low inter-subject variability of quantitative MRI metrics, normative atlases can detect subject-specific deviations while accounting for age and sex effects.

Sixteen patients (8 male, 8 female) with HD underwent quantitative MRI on a 3T PET/MR system (Biograph mMR, Siemens Healthineers, Forchheim, Germany), including: MP2RAGE for T1 mapping and a research application sequence (GRAPPATINI) for T2 mapping. Healthy controls (HC) data acquired as previously described by Piredda and colleagues [5] were used to construct normative atlases. Individual T1 and T2 maps were co-registered to the normative atlas, and linear regression models were used to estimate age- and sex-adjusted normative values. Mean regional T1 and T2 values were extracted from 56 cortical and subcortical regions using a research application software[6]. Subject-specific deviations were quantified using z-scores, calculated as the difference between observed regional mean value and the age-/sex-predicted normative value, divided by the standard deviation of the model residuals. Significant abnormalities were defined in regions with more than 2 standard deviations from the corresponding normative population value (|z|>2). A Python pipeline was used to generate regional heatmaps, displaying the number of patients with significant positive or negative deviations in each region.

Regional z-scores analysis revealed distinct patterns of T1 and T2 relaxation time alterations across the HD cohort. Heatmaps (Figures 1 and 2) showed the number of patients with significant regional deviations. Specifically, T1-based analysis (Figure1) demonstrated predominantly positive z-score abnormalities, particularly involving the insular cortex and occipital areas. In contrast, subcortical nuclei, including the caudate and putamen, showed prevalent negative z-scores, suggesting a distinct pathological signature within deep gray matter (GM) structures. T2-based analysis (Figure2), revealed a more extensive abnormalities, with a markedly higher number of patients exhibiting positive z-score alterations in the right cingulate cortex, left frontal lobe, and widespread occipital and parietal regions, suggesting increased sensitivity of T2 mapping to diffuse neurodegenerative processes. Overall, T1 and T2 relaxometry captured overlapping but complementary patterns of tissue alterations, providing distinct information on cortical GM and subcortical involvement. Figure 3 highlighted a spatial distribution of cortical alterations, whereas Figure 4 focuses on subcortical abnormalities, further supporting a dissociation between cortical and deep GM pathology in HD.

These findings demonstrate that combined T1 and T2 relaxometry, integrated within a normative z-score framework, provides a sensitive and spatially specific approach for characterizing neurodegeneration in HD. Our results reveal a clear dissociation between cortical and subcortical involvement: T1 mapping predominantly identifies focal cortical abnormalities, especially within insular and occipital regions, whereas T2 mapping detects more diffuse alterations involving both GM and white matter. The negative z-score pattern observed in the caudate and putamen is consistent with previous evidence of iron accumulation and metabolic alterations in HD. Importantly, the patient-specific visualization of regional abnormalities through heatmaps may improve the interpretability of quantitative MRI findings and support individualized disease characterization.

T1 and T2 relaxometry enables sensitive detection of subject-specific microstructural abnormalities in HD, revealing complementary cortical and subcortical patterns of degeneration. Our findings support the presence of early and widespread cortical involvement, particularly within occipital regions, and highlight the added value of quantitative MRI combined with normative modeling for personalized assessment of HD-related neurodegeneration. This framework may represent a promising imaging biomarker for disease characterization and future longitudinal monitoring.
Angelina CATRAMBONE (Catanzaro, Italy, Italy) , Ian CHERABIER , Maria Celeste BONACCI , Gian Franco PIREDDA , Domenico ZACÀ , Tom HILBERT , Bénédicte MARÉCHAL , Maria Eugenia CALIGIURI
13:30 - 14:15 #54586 - P328 Feasibility of High-Resolution Enhanced Susceptibility Mapping from Mono-Echo 3D EPI Using a Mask-Free Reconstruction Framework.
P328 Feasibility of High-Resolution Enhanced Susceptibility Mapping from Mono-Echo 3D EPI Using a Mask-Free Reconstruction Framework.

Quantitative susceptibility mapping (QSM) (1) is a powerful MRI tool for probing tissue magnetic susceptibility, with increasing clinical relevance. Current ISMRM consensus recommendations (2) emphasise multi-echo gradient echo (GRE) acquisitions. However, these approaches remain limited by relatively long acquisition times and sensitivity to motion, restricting their use in time-constrained or clinically challenging settings. Mono-Echo 3D EPI acquisitions are also sensitive to susceptibility, such that they can be used for QSM. Recently, deep-learning reconstruction (3) strategies were used to enhance resolution in clinical settings reaching sub-millimeter voxel sizes in a few minutes. In this work, we show the feasibility of a new mask-free processing framework that enables the reconstruction of quantitative susceptibility maps from such mono-echo data, thereby providing high-resolution enhanced susceptibility mapping in a few minutes at clinical field strength.

MR examination was performed on a Multiple Sclerosis (MS) patient on a clinical 3T MR system (Magnetom Prisma, Siemens Healthineers, Forchheim, Germany) equipped with a 64-channel head/neck coil. The MR sequence employed was a prototypal segmented 3D-EPI with Deep-Learning reconstruction, super-resolution and advanced phase processing. Acquisition time was 3min02s with a reconstructed 0.5x0.5x0.65mm (3) spatial resolution, axial orientation, water excitation and a single echo time of 27 ms. 3D FLAIR images were also acquired providing lesion references. 3D-EPI high resolution data were processed with a dedicated and robust strategy to provide whole-head Enhanced Susceptibility Mapping (ESM). Phase unwrapping and background field removal were performed using a Laplacian-based approach (4). Magnetic susceptibility map was then estimated using a constrained optimisation (maximum likelihood) formulation with zeroth- and second-order derivative priors.

The method demonstrates the feasibility of mask-free enhanced susceptibility mapping from mono-echo high-resolution 3D-EPI deep-learning reconstruction without anatomical masking (Figure 1). Qualitative analysis confirms detailed visualization of brain tissues, notably deep gray nuclei. Minimum intensity projection led to enhanced visualization of veinous network. MS lesions appeared to have different ESM features such as paramagnetic rim, central vein sign, or iso-intensity (Figure 2). Calcifications could also be detected in choroid plexuses and in putamen.

The proposed approach enables whole-brain high resolution enhanced susceptibility mapping from mono-echo 3D EPI deep learning magnitude and phase reconstruction, supporting effective discrimination between para- and diamagnetic sources without the need for anatomical masking, with a high potential for robust tissue characterization applied to multiple sclerosis.
Stephane ROCHE , Samira MCHINDA , Aurelien MASSIRE , Ludovic DE ROCHEFORT (Marseille) , Blanche BAPST
13:30 - 14:15 #54591 - P329 Multiparametric quantitative MRI brain atlas in MNI space of quantitative T1, H2O mapping, quantitative susceptibility mapping, and T2* for voxel-wise assessment of brain tissue abnormalities at 3T.
P329 Multiparametric quantitative MRI brain atlas in MNI space of quantitative T1, H2O mapping, quantitative susceptibility mapping, and T2* for voxel-wise assessment of brain tissue abnormalities at 3T.

Multiparametric quantitative MRI (mp-qMRI) enables objective assessment of complementary tissue properties such as quantitative T1, proton density/water content, T2*, and magnetic susceptibility[1]. However, only few normative brain atlases provide multiple quantitative parameters acquired within a single measurement framework and transformed into a common standard space with a vendor neutral sequence. This study aimed to construct a multiparametric 3T qMRI brain atlas in MNI space[2] and to evaluate its applicability for voxel-wise detection of patient-specific brain tissue abnormalities.

Twenty-nine healthy volunteers (29.2 ± 7.1 years) were scanned on a Philips MR7700 3T scanner using a 3D mp-qMRI protocol [Thomas et al. 2024]. Quantitative maps were skull-stripped and nonlinearly registered to MNI space using Advanced Normalization Tools (ANTs), then combined voxel-wise to generate modality-specific mean and standard deviation atlases. Patient-specific Z-score maps were calculated by comparison with the control atlas, and voxel-wise statistical significance was assessed with correction for multiple comparisons[3].

The resulting atlas provided spatially normalized reference maps for quantitative T1, H2O mapping, QSM, and T2*. Voxel-wise patient comparison enabled visualization of modality-specific deviations in MNI space. In representative patient data with multiple sclerosis, Z-score maps showed spatially plausible abnormalities corresponding to lesions visible on anatomical imaging, with distinct patterns across qT1, H2O, T2*, and QSM. Notably, atlas-based deviation maps also demonstrated quantitative abnormalities in normal-appearing white matter, indicating the potential to capture subtle diffuse tissue alterations that may remain occult on conventional anatomical MRI[4].

The present work demonstrates the feasibility of a three-dimensional multiparametric qMRI atlas in MNI space for standardized voxel-wise patient assessment. Combining qT1, H2O mapping, QSM, and T2* provides complementary information on tissue properties and may help characterize lesion-related abnormalities beyond conventional MRI. However, deviations at gray-white matter interfaces and cerebrospinal fluid boundaries require cautious interpretation due to partial-volume effects and residual registration inaccuracies. The relatively young reference cohort may also limit comparisons with older patient populations. Larger, age-diverse and longitudinal datasets are needed for further validation.

We constructed a multiparametric 3T qMRI brain atlas in MNI space based on 29 healthy controls using data acquired with a vendor-based MRI sequence. In representative patient data, we demonstrated the feasibility of atlas-based voxel-wise detection of lesion-related tissue abnormalities across multiple quantitative contrasts, including alterations not fully captured by conventional MRI. This standardized framework may facilitate future multicenter applications of quantitative MRI.
Florian A. STOLZ , Dennis C. THOMAS , Andrei MANZHURTSEV , Fabio O. MARCELA , Christophe ARENDT , Gamze SAKALLI (Frankfurt am Main, Germany) , Elke HATTINGEN
13:30 - 14:15 #54647 - P330 Longitudinal T1 and R1 Mapping of Reading and Classical Language Networks in Developing Adolescents.
P330 Longitudinal T1 and R1 Mapping of Reading and Classical Language Networks in Developing Adolescents.

Quantitative MRI is still underused in developmental language research, where maturation is usually studied with fMRI activation, cortical thickness, or volumetry. MP2RAGE-derived T1/R1 mapping offers microstructure-sensitive measures that may detect subtle cortical maturation. This is important because reading is a culturally acquired skill that recruits older visual, phonological, semantic, attentional, and articulatory systems. Neural reuse and neuronal recycling accounts therefore predict distributed reading-related maturation, rather than change restricted to the VWFA [1,2]. In contrast, sensitive-period accounts emphasize developmental constraints on language learning and maturation [3,4]. Here, longitudinal MP2RAGE-derived T1/R1 maps from the Queensland Twin Adolescent Brain dataset were used to test whether reading-related regions show age-sensitive maturation distinct from classical language and control networks.

Thirty-three participants from the Queensland Twin Adolescent Brain dataset were included in the final qMRI-compatible longitudinal sample. Participants were aged 12.24 ± 0.66 years at session 1 and 14.42 ± 0.61 years at session 2, with a mean interval of 2.18 ± 0.39 years. Age was modeled as a maturational variable, and participants were grouped by session-1 median split into younger, age ≤ 12, n = 21, and older, age > 12, n = 12. The sample included 27 right-handed and 6 left-handed participants, with a right-handed sensitivity analysis. Participants had two-session imaging data and qMRI-compatible MP2RAGE protocols. MRI was acquired on a 3T Siemens Magnetom Prisma with a 64-channel head coil. MP2RAGE images were acquired at 0.8 mm isotropic resolution, TR = 4000 ms, TE = 2.99 ms, TI1/TI2 = 700/2220 ms, and flip angles of 6°/7°. T1 maps were estimated in qMRLab, and R1 was computed as 1/T1. SPM grey-matter segmentation and AAL3/literature-based ROIs defined reading/neural-reuse, classical language, and control networks. ROI voxels were retained after grey-matter and valid-range filtering, and mean/median T1/R1 values were extracted. Linear mixed-effects models tested Session, Network, and Age Group effects, with sex and QC variables as covariates and random effects for subject and ROI.

Across 33 qMRI-compatible longitudinal participants, valid T1/R1 values were extracted from reading/neural-reuse, classical language, and control ROIs after grey-matter and valid-range filtering.T1 decreased significantly from session 1 to session 2, β = −0.0187, SE = 0.0079, t(848) = −2.36, p = .018, consistent with longitudinal qMRI-sensitive maturation. The Session × Network interaction was significant, F(2, 844) = 4.40, p = .013, showing that T1 change differed across networks. Contrary to prediction, reading/neural-reuse ROIs did not show the strongest decrease; control ROIs showed the largest decrease, while reading and classical language ROIs showed comparable changes. The Session × Network × Age Group interaction was also significant, F(2, 844) = 5.05, p = .0066, indicating that network-specific T1 maturation varied by developmental stage. R1 showed the expected inverse pattern, increasing significantly from session 1 to session 2, β = 0.0119, SE = 0.0037, t(844) = 3.25, p = .0012. The Session × Network interaction was significant, F(2, 844) = 3.84, p = .022. Control ROIs showed the largest R1 increase, M = 2.47%, followed by reading/neural-reuse ROIs, M = 1.87%, and classical language ROIs, M = 1.83%. Reading and classical language changes were highly similar, Δ = 0.04%, p = .813. The R1 Session × Network × Age Group interaction was also significant, F(2, 844) = 4.02, p = .018.

These findings show that longitudinal MP2RAGE-derived T1/R1 mapping can detect network-level maturational differences in children. Reading maturation was tested as a distributed visual-language-parietal network, not only as a VWFA effect. Contrary to prediction, reading ROIs did not show stronger change than controls; instead, reading and classical language networks showed highly similar maturation. This supports a neural-reuse interpretation in which reading develops through shared visual, semantic, phonological, and attentional systems. Future work should include larger samples, behavioral reading measures, and improved control ROIs.

Longitudinal T1 and R1 mapping offers a quantitative MR approach for studying language and reading development beyond activation-based neuroimaging. In QTAB, comparing reading, classical language, and control ROIs across two sessions allows a direct test of whether literacy-related systems show distinct microstructural maturation during late childhood and early adolescence. This framework positions qMRI as a promising tool for linking developmental language theory with measurable tissue-sensitive MR markers.
Alireza RAHMANIAN (Istanbul, Turkey) , Pinar Senay ÖZBAY
13:30 - 14:15 #54176 - P331 Calibration of MR relaxometry for liver iron quantification sing human liver explants.
P331 Calibration of MR relaxometry for liver iron quantification sing human liver explants.

Magnetic resonance relaxometry has become an established non-invasive approach for quantifying liver iron content (LIC), providing an alternative to invasive liver biopsy [1]. Iron deposition in the liver shortens transverse relaxation times T2 and T2* through susceptibility-induced magnetic field inhomogeneities, enabling estimation of hepatic iron burden from R2 and R2* relaxation rates. However, calibration of these MR parameters against chemically determined LIC remains necessary for reliable clinical application. The aim of this study was to describe calibration equations for estimating LIC in human liver explants based on R2 and R2* relaxation rates and to compare them with literature models.

The study included 36 human livers, predominantly diseased, explanted from humans. Liver explants were stored in plastic containers containing formalin (Figure 1). LIC in biopsies was determined using atomic absorption spectrometry. MR examinations of the liver were performed at 3T MR system VIDA using a Siemens LiverLab [2] liver imaging protocol: q-Dixon R2* mapping, multi spin-echo R2 mapping, and R2 from HISTO single voxel spectroscopy. Quantitative MR maps were analyzed using 3D Slicer software [3].

Iron concentrations measured in the right and left hepatic lobes demonstrated excellent agreement (r = 0.937, p < 0.0001), therefore, mean concentrations were used for subsequent analyses. Strong correlations were observed between chemically determined LIC and MR relaxometry (Figure 2). Linear regression models are summarized in Table 1 together with previously published equations proposed by d’Assignies [4] and Peng [5]. Root mean square error (RMSE) analysis demonstrated that q-Dixon R2* and multi-echo R2 models provided the best predictive accuracy, whereas HISTO-based approaches showed markedly reduced predictive performance. The derived equations were subsequently applied to previously acquired in vivo datasets comprising healthy controls, patients with primary sclerosing cholangitis (PSC), and subjects with suspected iron overload. PSC patients exhibited significantly lower R2 and R2* values, suggesting reduced hepatic iron content. Subjects with suspected iron overload demonstrated markedly elevated relaxation rates and LIC estimates exceeding the physiological range (Figure 3).

Despite the overall agreement in group stratification of subjects, notable differences were observed between LIC estimates derived from R2 and R2* relaxometry. R2 relaxivities are less sensitive to magnetic susceptibility effects, contrary to R2* relaxometry, which is highly sensitive to susceptibility-induced dephasing caused by ferritin and hemosiderin aggregates. The markedly different relaxivity slopes observed for R2 and R2* likely reflect the additional contribution of susceptibility-mediated relaxation mechanisms to R2* measurements. The ratio between R2* and R2 relaxivity slopes may therefore provide indirect information regarding the relative contribution of iron-induced magnetic field inhomogeneities in hepatic tissue. The complementary behavior of R2 and R2* relaxometry reflects distinct underlying physical mechanisms: R2 is more stable at low iron concentrations, while R2* provides greater sensitivity to iron overload.

Strong associations were observed between MR relaxometry parameters and chemically determined LIC in explanted human livers. q-Dixon R2* and multi-echo R2 mapping demonstrated the best predictive performance, whereas HISTO showed substantially higher prediction errors. The observed differences between R2 and R2* relaxometry reflect distinct underlying susceptibility-related relaxation mechanisms. These findings support the utility of explanted liver relaxometry for development and validation of MR-based hepatic iron quantification methods.
Petr KORDAC , Petr SEDIVY (Prague, Czech Republic) , Dita PAJUELO , Monika DEZORTOVA , Martin KVETON , Ondrej FABIAN , Iva SUBHANOVA , Ferdinand LOS , Milan HAJEK
13:30 - 14:15 #54470 - P332 Verdazyl-based organic radical contrast agents as potential substitute for metal-based contrast agents.
P332 Verdazyl-based organic radical contrast agents as potential substitute for metal-based contrast agents.

Concerns regarding the potential effects of gadolinium deposition have been voiced for many years [1]. This sparked a search for a metal-free alternative, which for one comes in the form of contrast agents based on stable organic radicals, referred to as ORCAs, which inherit their paramagnetic properties from an unpaired electron. However, these compounds also suffer from important limitations, including limited stability and lower relaxivity compared with gadolinium-based contrast agents. A promising approach to address these issues is the stabilization of radical species through the formation of macromolecular conjugates, which may additionally improve their physico-chemical properties. In this study, we investigated novel Verdazyl-based polymeric compounds designed to improve radical stability while preserving suitable imaging performance. The probes were compared with established standards, including 3-Carboxy-Proxyl [2], which is routinely used as a reference compound for this class of contrast agents.

Polymer conjugates were synthesized using RAFT polymerization [3]. Relaxivity, contrast and probe stability were evaluated on a 7T MR system. Primarily using T1-weighted FLASH imaging, as well as saturation recovery and inversion recovery mapping sequences. Data analysis was performed by comparing relaxivity values and changes in relaxation times under reducing conditions. The MR images were evaluated by comparing the parameters of newly prepared conjugates with previously reported unmodified agents including Proxyl [4], Tempo [4] and Verdazyl [5], using a custom Matlab [6] script. All measurements have been performed in vitro in aqueous phantoms [7].

Our preliminary results show that the stability of Verdazyl was improved by polymer conjugation, particularly for the PV3 conjugate, when compared with unmodified Proxyl. In an experiment using 10 mM ascorbic acid to simulate a reducing biological environment, we compared 60 mg/ml PV3 with 0,25 mg/ml Proxyl over a period of 24 hours. Within this timeframe, Proxyl showed a marked increase in T1 relaxation time, from an initial value of 1040 ms to 2140 ms. In contrast, PV3 rapidly shifted from an initial T1 value of approximately 1350 ms to 1750 ms, where it remained stable for the rest of the measurement period. In the case of Proxyl this change resulted in a distinct loss of contrast. On the contrary PV3 retained its MR signal, making it still visible even after 24 h. (see Figure 1) These values have been acquired using Bruker’s saturation recovery T1 mapping sequence at 6 points within the 24 hours.

By combining Verdazyl with a polymer, we managed to retain its contrast properties even under reducing conditions. Based on this observation, we plan to prepare analogous conjugates based on Proxyl in order to determine whether the same stabilizing effect can be achieved with other ORCA systems. Furthermore, we intend to perform cytotoxicity studies. Once a suitable candidate is found, we intend to move forward to in vivo measurements.

Stabilizing ORCAs using a macromolecular polymer structure led to increased stability, supporting further investigation of this class of contrast agents. We successfully prepared a polymer conjugate of Verdazyl with great stability and viable relaxivity in comparison with unmodified ORCAs. We further aim to look for more polymer structures with Verdazyl and also explore conjugates with Proxyl as a base to broaden our library of potential candidates for in vivo applications. Last but not least, we plan to perform biocompatibility and in vivo performance analysis of selected samples.
Filip KRUPA (Praha, Czech Republic) , Martin ORSÁGH , Ondřej SEDLÁČEK , Daniel JIRÁK
13:30 - 14:15 #54567 - P333 Quantitative imaging of the head and neck at 1.5T using STrategically Acquired Gradient Echo (STAGE): Optimization of B1 correction and evaluation of longitudinal T1 stability.
P333 Quantitative imaging of the head and neck at 1.5T using STrategically Acquired Gradient Echo (STAGE): Optimization of B1 correction and evaluation of longitudinal T1 stability.

Quantitative MRI (qMRI) is increasingly being explored as a promising approach for physiological adaptive radiotherapy. Multiparametric mapping has shown potential for assessing and predicting tumor treatment response and patient outcomes [1]. However, current qMRI methodologies are impractical for routine clinical use due to long acquisition times, complex protocols, and extensive post-processing requirements. Strategically Acquired Gradient Echo (STAGE) offers a promising alternative, enabling the derivation of multiple quantitative parameters such as T1, T2*, proton density, and Susceptibility Weighted Imaging from two rapid gradient-echo scans; however, its application has been limited to brain studies [2]. An important step when calculating T1 maps is a robust correction of B1 inhomogeneity [3], which is not available in literature. Additionally, the stability of longitudinal T1 measurements is critical for its clinical implementation [4]. In this study, we implemented a B1 correction approach adapted from brain imaging for use in head and neck tissues. We also evaluated the feasibility and reproducibility of longitudinal T1 mapping with repeated acquisitions in both a phantom and a healthy subject.

A T1 NIST phantom containing 14 vials with different T1 properties was scanned on a 1.5 T Siemens MAGNETOM Sola (Erlangen, Germany) using a head-and-neck coil with 20 channels, with both IR and STAGE protocols across four sessions over one week. A healthy volunteer was scanned twice with the same protocol a week apart. The first scan was treated as baseline. The following parameters were used for STAGE: TR = 41 ms, TE1/TE2 = 10/30 ms, acquisition resolution =1.098 x 1.098 x 4 mm3, matrix size = 112x78, 40 axial slices with 20% oversampling, and bandwidth = 120 Hz/pixel using a dual–gradient-echo sequence with flip angles of 7° and 38°, flow compensation, GRAPPA factor = 2, and a saturation band to reduce flow artifacts (8 min scan time). For IR: TR/TE 6650ms/7.9 ms, acquisition resolution =0.976 x 0.976 x 4 mm3, matrix size = 256 x 241, 8 axial slices, and bandwidth = 279 Hz/pixel (1.5hr scan time). The IR data were analyzed with qMRLab [4] while the STAGE data were analyzed using a custom MATLAB code. For the phantom data, a circular ROI was placed over each vial and the T1 mean and standard deviation were extracted. For the healthy subjects, ROIs were drawn in 7 structures, including the tongue, masseters, parotid glands, and neck muscles. To correct for B1 inhomogeneity in STAGE-derived T1 (T1app), a spatial scaling factor, known as k, was estimated using IR as a reference. For the phantom, the water section of the phantom was segmented to create an initial k map, with T1 = 2682 ms as a reference value. A slice-wise polynomial fitting approach was applied to create a smooth k map over the entire volume. For the head and neck, muscle and fat were segmented, with T1fat = 295 ms and T1muscle=837 ms, and an initial k map was derived from each, combined, then the same approach was used to generate a global correction map, shown in Fig. 1. This correction was then applied to the initial STAGE T1 values using the relationship T1app = T1*k^2. Data from the longitudinal acquisitions were compared for both the phantom and healthy subject.

For the phantom, the water-based k-map provided adequate correction with good agreement between IR and STAGE for all spheres, reducing bias from 11% to 9%. In the head and neck, the k-map generated using T1 values measured with IR for fat and muscle brought the STAGE-derived T1 map closer to the corresponding IR value for acquisitions A and B, reducing bias from 33% and 36% to 13 and 18% respectively. The percent change between the repeated scans was between 5-15% for IR and 0-5% for corrected STAGE values.

qMRI of the head and neck is challenging as the region is prone to motion, flow, and susceptibility artifacts, and standard qMRI such as IR takes a considerable long time to obtain. STAGE offers a fast alternative but lacks a framework for its application in the head and neck, as its initial implementation generates a k-map based on brain’s white and gray matter [2]. Our results show that a fat and muscle-based k-map to account for B1 discrepancies is possible for STAGE T1. This approach provided T1 measurements with low variability across repeated scans, which was comparable or less variable than IR test-retest measurements. While demonstrating temporal stability, further optimization potentially using T1 from more tissues additional to fat and muscle is needed to improve the accuracy of STAGE-derived T1 estimates.

STAGE-derived T1 values in the head and neck show stability across repeated scans, suggesting it as a promising option for quantitative measurement. The fat and muscle tissue based corrective k-map improved T1 successfully reduced the bias in T1 estimation by 19% on average, indicating a viable method for B1 correction but this method requires further optimization.
Andres GONZALEZ (Los Angeles, USA) , Shu-Fu SHIH , Holden WU , Maziero DANILO
13:30 - 14:15 #54680 - P334 Comparison of T2 values estimated from Multi-TE M0 and Arterial Spin Labeling MRI.
P334 Comparison of T2 values estimated from Multi-TE M0 and Arterial Spin Labeling MRI.

Meningiomas are the most common primary intracranial tumors [1]. Multi-TE ASL can be used to assess blood-brain permeability non-invasively [2]. A recent study used tumor-specific T2 times estimated from multi-TE ASL-control images and literature tumor T2 values, and compared the improvements in multi-TE ASL estimates due to different T2 values in gliomas [3]. However, ASL scans often employ background suppression to improve the signal-to-noise (SNR) ratio [4], and estimating T2 values from multi-TE ASL-control images may yield suboptimal T2 estimates. This study investigated the effect of background suppression on T2 estimates, comparing estimates from multi-TE M0 and ASL-control images.

Seven histopathologically proven meningiomas (Six grade 1 and one grade 2 according to WHO-CNS 2021 [5], one fibrous, two transitional, one angiomatous, one secretory, one atypical, one meningothelial, F/M=5/2, mean age=55.3±13.5 years) were scanned on a clinical 3T MRI scanner (MAGNETOM Prisma, Siemens Healthineers, Erlangen, Germany) with a 32-channel head coil. Multi-TE M0 and Hadamard-encoded pseudo-continuous ASL (pCASL) data were acquired using the vendor-neutral MRI framework gammaSTAR [6]. The multi-TE Hadamard-4 pCASL was used with a sub-bolus duration of 1000 ms, PLD of 500 ms, TR of 4500 ms, and eight TEs [13.8:27.6:207 ms], yielding datasets with three TIs [1500:1000:3500 ms] with 3D GRASE readout and two FOCI inversion pulses to suppress background signal with T1 values of 700 ms and 1400 ms. The multi-TE M0 was acquired with TE=[13.2:26.4:198 ms], TR=5000ms, and TI=800ms. The nominal resolution was set to be 5x5x5 mm3. Pre- and post-contrast T1w SPACE (TR=600 ms, TE=12 ms, slice thickness=0.8 mm) were acquired as structural references. T2 maps (T2-M0 and T2-ASL) were fitted using the multi-TE M0 images and multi-TE Hadamard-4 pCASL sequence, according to Eq. 1, where Sᵢ is the multi-TE image, and TEᵢ is the echo times from second to eighth echo, S1 and TE1 are the first image and echo time with k fitting constant. Tumor regions were delineated on post-contrast T1w scans using 3D Slicer [7]. Normal-appearing gray matter (NAGM) and normal-appearing white matter (NAWM) regions were segmented on T1w MRI using CAT12 [8]. First-order histogram values of both T2 maps within the tumor, NAGM, and NAWM regions were calculated using MATLAB 2026a (Mathworks Inc., Natick, MA). A Friedman test was used to compare the T2-M0 and T2-ASL in different regions (NAWM, NAGM, and tumor), and a Wilcoxon test was used to compare medians between T2-M0 and T2-ASL (significance threshold: p<0.0167). Additionally, Bland-Altman analysis was used to assess differences between the T2 maps.

Figure 1 shows both T2 maps estimated from multi-TE M0 and ASL-control images, as well as the fitting plots of one voxel in the tumor regions for one patient. Table 1 shows the median T2 estimations from the multi-TE M0 and ASL-control images at the tumor, NAGM, and NAWM regions, along with the median ratio of T2-M0/T2-ASL. The median T2-M0/T2-ASL ratios for tumor and NAWM regions were 0.98 and 1.04 (p=0.018), respectively. NAGM ratios were 0.77 (p=0.018) and were lower than those in NAWM and tumor. Figure 2 displays the regional comparison of both T2-estimates from multi-TE M0 and ASL control images. T2 estimates from both M0 and ASL-control images follow the pattern reported in the literature, and NAWM had shorter T2 times than NAGM (p=0.0167), and tumors had longer T2 times than NAGM (p=0.0167). Figure 3 presents the Bland-Altman analysis between T2-M0 and T2-ASL estimations. T2-ASL estimates were higher than T2-M0 estimates by 28.47 in NAGM regions. Although the values from all three regions were within the limits of agreement (LoA), the tumor region values showed greater agreement than NAGM and NAWM.

This study investigated the effect of background suppression on T2 estimations using multi-TE M0 and ASL-control images. T2 values were higher in the tumor than in NAGM and NAWM, and NAGM values were higher than NAWM values, as reported in the literature for T2 estimations [9,10]. Although slight differences were observed at the NAGM and NAWM, the Bland-Altman analysis showed good agreement between T2 maps obtained from ASL-control and M0 images, especially in the tumor region. Higher disagreement was observed in the NAGM region than in the NAWM and tumor regions, which may be due to partial-volume effects from CSF.

In conclusion, T2 estimates from ASL-control images were in agreement with those of the M0 images. It is important to note that T2 values may be affected by background suppression and partial-volume effects from CSF.
Ayse Irem CETIN (Istanbul, Turkey) , Melisa OZAKCAKAYA , Gulce TURHAN , Amnah MAHROO , Beatriz E. PADRELA , Simon KONSTANDIN , Daniel Christopher HONKISS , Nora-Josefin BREUTIGAM , Vera C. KEIL , Ayca ERSEN DANYELI , Koray OZDUMAN , Klaus EICKEL , Henk Jmm MUTSAERTS , Matthias GÜNTHER , M. Necmettin PAMIR , Alp DINÇER , Jan PETR , Esin OZTURK-ISIK
13:30 - 14:15 #53329 - P335 Smoothness Constraints Remain Essential in Undersampling-Aware MR Fingerprinting Sequence Optimization.
P335 Smoothness Constraints Remain Essential in Undersampling-Aware MR Fingerprinting Sequence Optimization.

Magnetic Resonance Fingerprinting (MRF) enables quantitative estimation of MR relaxation times from highly undersampled data [1]. Zhao et al. introduced sequence optimization based on the Cramér–Rao lower bound and observed improved performance with respect to undersampling for smoother flip angle patterns [2]. Later approaches explicitly incorporated undersampling-related error terms into the objective functional [3,4]. These methods still retained smoothness constraints and again reported favorable behavior for smoother sequences. This raises a fundamental question: why are smoothness constraints still required in optimization frameworks that are already designed to mitigate undersampling artifacts? From an optimization perspective, removing the smoothness constraint enlarges the feasible parameter space and should therefore yield solutions of at least comparable quality.

Starting from the optimization framework of Heesterbeek et al. [3], based on the linearized undersampling error model of Stolk and Sbrizzi [5], we systematically investigated the effect of varying smoothness constraints by optimizing MRF sequences, consisting of an initial adiabatic inversion pulse followed by 399 excitations between 10° and 60°. The smoothness constraint ΔFAmax, defined as the maximum allowed change between two successive flip angles, was varied from 0.25° to 2° in powers of two, and an unconstrained case was included for comparison. Archimedean spiral arm rotation was based on a rational approximation of the golden angle with a ratio of 21/34 for an undersampling factor R = 34 [6]. The resulting sequences shown in Figure 1 were evaluated in simulations, phantom experiments, and in vivo measurements. Simulations were based on publicly available T1 and T2 reference maps [7]. Phantom and in vivo measurements were performed on a 3T MAGNETOM Prismafit scanner (SIEMENS Healthineers, Forchheim, Germany) using a transverse slice with TR = 15 ms, TE = 7.5 ms, FOV = 224×224 mm², and spatial resolution = 1×1×5 mm³. Phantom experiments were conducted using the ISMRM/NIST system phantom (Essential System Phantom Model 106, CaliberMRI). The in vivo study was approved by the local ethics committee and written informed consent was obtained from the volunteer. Bloch-equation based dictionaries were generated with OpenMRF [8], followed by retrospective spiral undersampling using the NUFFT and dictionary matching. Fully sampled reference acquisitions with identical sequence parameters were used to quantify relative errors due to undersampling.

The linearized model used for optimization predicted decreasing undersampling-related errors with increasing ΔFAmax, suggesting that weaker smoothness constraints should improve performance (Fig. 2). In contrast, full simulations that did not rely on the linearized model showed that reconstruction performance did not improve when the smoothness constraint was relaxed. The unconstrained sequence produced the largest artifacts, whereas intermediate smoothing performed best (Fig. 2). Phantom and in vivo measurements confirmed this behavior (Figs. 3-4), with ΔFAmax = 0.5° achieving the best overall performance. Median absolute relative errors were below 5% for both T1 and T2 in the best-performing measured sequence. The corresponding T1 and T2 maps showed good agreement with the reference data.

These findings show that smoothness constraints are a critical component of optimization approaches that mitigate undersampling artifacts using a linear approximation. The discrepancy between the linearized model and the full simulations can be explained by the linear approximation underlying the objective functional. Its validity deteriorates when T1 and T2 values deviate strongly from the mean values used in the model. As a result, the model does not adequately capture the destructive interference effects and underestimates the undersampling-related errors during optimization, while both, simulations and experiments reveal increased errors for strongly varying flip angle sequences. In contrast, smoother flip angle patterns appear to keep the approximation errors limited. These results suggest that avoiding explicit smoothness constraints would require a different framework for modeling undersampling errors, likely at increased computational cost.

Smoothness constraints remain essential for undersampling-aware MRF sequence optimization based on a linearized error model. In the investigated setting, ΔFAmax = 0.5° provided the best overall compromise, outperforming both weaker constraints and unconstrained optimization. Future optimization approaches should explicitly account for the validity limits of the linear approximation, which is reliable only for limited ranges of T1 and T2 values.
Tim HÖPFNER (Würzburg, Germany) , Jona SIPPEL , Maximilian GRAM , Viktor HARTUNG , Frank WERNER , Herbert KÖSTLER
13:30 - 14:15 #53469 - P336 T2 Mapping from a Single Partially Spoiled Non-Balanced Oscillating Steady State.
P336 T2 Mapping from a Single Partially Spoiled Non-Balanced Oscillating Steady State.

RF spoiling[1] with a small spoiling increment can be used to encode T2[2]. Thus, partially spoiled gradient echoes have been proposed to quantify T2 using two steady states with different spoiling increments in 3D [3,4]. An oscillating steady state can be achieved by periodically varying the flip angle[5], the repetition time[6] or the phase[7] of the applied RF-pulses. The phase of a partially spoiled oscillating steady state created by a periodically oscillating flip angle has a T2 dependency[8], eliminating the need for a second steady state as reference. In this work, we investigate whether the T2-dependent phase behavior of a partially spoiled oscillating steady state can be used to reconstruct T2 maps in 2D from a single steady-state experiment. Thereby acquisition time can be reduced by avoiding the acquisition of a separate reference steady state.

MR images of the ISMRM/NIST phantom (Essential System Phantom Model 106, CaliberMRI[9]) and from the head of a healthy volunteer were acquired at a 3T whole-body system (MAGNETOM Prismafit, SIEMENS Healthineers, Forchheim, Germany). The study was approved by the local ethics board. Written informed consent was obtained from the subject prior to scanning. The partially spoiled oscillating steady state gradient echo sequence adopted Archimedean spiral trajectories. An axial 2D slice of the MnCl2 layer and an axial brain slice were measured with the parameters TE=1.2ms, TR=8.6ms, flip angles=10° and 14° and a phase increment of 1°. The data were transferred onto a Cartesian grid via convolution gridding[11,12] and coil-combined using ESPIRiT coil-sensitivity maps[13,14]. The voxel size was 1x1x5 mm^3 for a FOV of 22.4x22.4cm^2. To reconstruct the T2 map, the complex signal of the small flip angle was normalized by the signal of the large flip angle. The resulting complex ratio was compared to a pre-calculated dictionary. T2 was determined voxelwise from the dictionary entity with the minimum distance to the corresponding complex signal. The dictionary was determined from Bloch isochromat simulations taking the slice profile of the RF pulse into account. The dictionary consists of 200 T2 values ranging from 3ms to 0.85s by applying a step size of approximately 3%. T1 values were set 10.6*T2 as an approximation based on reference T1 and T2 values for the human brain [14] but limited to T1=2s. The dictionary and the sequence were generated using OpenMRF[15]. For the phantom a T2 reference map has been determined using spin echo experiments with 10 TEs ranging from 10ms to 250ms and a resolution of 2x2x6mm3. This reference measurement was compared with the new mapping approach using ROIs in different inserts of the NIST/ISMRM phantom.

The ratio of the measured complex data determined for the phantom as well as the dictionary entries are shown in Fig.1. T2 maps of the phantom and brain are shown in Fig.2a) and Fig.3, respectively. The relaxation parameter maps of the phantom show good agreement with the values of the reference measurement (Fig.2b)). The median magnitude of the deviation observed in the inserts for T2<200ms was 8ms. The deviation from the reference measurement increases for T2 values above 150ms. The quantitative relaxation parameters observed in the brain (Fig.3) match with literature values[14] for white and gray matter.

The measured signal shown in Fig.1 was located around the expected signal given by the dictionary. The broadening results from the SNR and the reconstruction method. The noise might influence the resulting T2 maps. The T1 dependence of the signal was only used implicitly and influences the complex reference values. An additionally determined T1map could be used to extend the dictionary. In the phantom measurement we could demonstrate a good agreement of the quantitative parameters with reference measurements. As the T2 information is calculated from one oscillating steady state the T2-SNR can almost continuously be improved by increasing acquisition time. The observed deviations increasing with T2 might arise due to a reduced sensitivity for large T2 values[3]. Earlier T2 mapping was based on partial spoiling in 3D acquisitions needing at least two different partially spoiled steady states [3, 4]. Taking the slice profile into account allowed to determine T2 maps in 2D using one partially spoiled oscillating steady state. Using only one steady state allows a reduction of the scan time and thus the susceptibility to motion artifacts as only on state needs to be prepared instead of two or more. No large flip angles are necessary allowing low SAR applications.

We showed initial results demonstrating that the proposed 2D sequence based on partially spoiled oscillating steady states was able to quantitatively map T2 in a phantom and in in vivo measurements taking the slice profile into account. T2 was determined from one partially spoiled oscillating steady state allowing a fast measurement with no need of preparing a separate reference state.
Jona SIPPEL (Wuerzburg, Germany) , Clemens MEY , Maximilian GRAM , Viktor HARTUNG , Herbert KÖSTLER
13:30 - 14:15 #53525 - P337 Simultaneous Whole Brain T1 and T2 Mapping Using QuantoRAGE: Study of the Impact of Two Adiabatic T2-Prepared inversions.
P337 Simultaneous Whole Brain T1 and T2 Mapping Using QuantoRAGE: Study of the Impact of Two Adiabatic T2-Prepared inversions.

Quantitative T1 and T2 mapping provides complementary information on brain tissue microstructure and has demonstrated sensitivity to neurological pathologies, potentially offering new imaging biomarkers [1–3]. However, whole brain mapping remains challenging at high fields, where transmit and static field inhomogeneities can degrade accuracy and cause signal voids [4], limiting reproducibility and clinical feasibility. QuantoRAGE enables whole brain simultaneous T1 and T2 mapping with isotropic resolution at 3T and 7T [5–7] using magnetization-prepared segmented FLASH [8] acquisitions and dictionary-based fitting. However, despite accounting for B1+ deviation in the dictionary, the original semi-adiabatic preparation can lead to inhomogeneities in regions affected by B1+ and B0 variations [7]. Here, we propose a modified QuantoRAGE approach based on a fully adiabatic, B1 insensitive rotation (BIR-4) preparation to improve robustness against RF transmit field variations [9], and evaluate its impact on T1 and T2 maps at 3T and 7T.

QuantoRAGE is based on a 3D segmented FLASH sequence derived from MP2RAGE [10] and enables simultaneous T1 and T2 mapping via a modified T2 prepared inversion (T2pi). After each T2pi, two undersampled readout blocks are acquired at different inversion times (TI) using a Cartesian center out trajectory [11]. Two T2pi durations (TEp) combined with two TIs yield four contrasts with complementary T1/T2 sensitivity. To estimate quantitative maps, the signal (i.e., concatenated voxel intensities across the four contrast images) is fitted to a dictionary generated with extended phase graphs (EPG) [12]. The original semi-adiabatic T2pi, consisting of a 400-µs rectangular tip down pulse, two 12-ms hyperbolic secant (HS3) refocusing pulses, and another rectangular tip down pulse [5], was replaced by a fully adiabatic BIR-4 composite pulse consisting of three segments (41 ms total duration) with relative phase shifts of 270° and 90°, yielding a nominal 180° inversion [9] (Fig. 1A). Measurements were performed in a phantom (Model 106 Essential System, CALIBER MRI) at 3T (MAGNETOM Prisma, Siemens Healthineers, Forchheim, Germany), and in healthy volunteers at 3T (n=3, [22-29]y/o) and 7T (MAGNETOM Terra; n=2, [26-27]y/o) under IRB approval. For each dataset, 1-mm isotropic QuantoRAGE data were acquired using both T2pi modules. Example contrasts and relative timings (TEp, TI1, TI2) are shown in Fig. 1C-F. Other relevant parameters include: TR=5000 ms, R=6.5, TA=8:50 min at 3T; TR=6000 ms, R=6.4, TA=8:54 min at 7T. Contrasts were reconstructed using a pretrained deep learning 3D method [13,14] and maps estimated voxel-wise using the sequence-specific dictionary [6]. MP2RAGE was acquired as anatomical reference [10]. Fast B1+ mapping was performed for correction during parameter estimation (3T: saturated turbo-FLASH [14], 7T: SA2RAGE [15]). Median T1 and T2 values between the two preparations were compared in manually-drawn ROIs in vitro and segmented brain regions [16,17] via linear regression.

At 3T, in vitro analysis showed high correlations with nominal values for both T2pi modules (relative B1+=0.62-1.48, r>0.95 for T1 and T2, Fig. 2). In vivo, both sequences produced homogeneous T1 maps (rel. B1+=0.67-1.26). Signal voids were visible in the frontal lobe of the T2 maps, with a slight bias in the superior part for semi-adiabatic T2pi (Fig. 3A). Quantitative analysis (Fig. 4A) showed minor T1 differences between preparations (r=0.99), whereas T2 values exhibited a systematic offset of approximately 10 ms (r=0.90). At 7T (rel. B1+=0.32-1.42), the fully adiabatic T2pi allowed for more homogeneous cerebellar, frontal, and deep brain regions (Fig. 3B). Fig. 4B shows a larger global bias (T1=100 ms, T2=30 ms) between T2pi modules compared to 3T, albeit high correlations (r=0.99/0.82 for T1/T2). Reduced T2 correlation was driven by frontal, parietal and occipital regions, where strongest inhomogeneities are seen.

In vitro 3T tests showed high agreement with nominal values for both preparations. 7T phantom tests were compromised by low B1+ at the level of the vials and were not reported (rel. B1+=0.01-1.49). In vivo, agreement between preparations was observed at 3T, with minor T2 offsets and localized signal voids. At 7T, the semi-adiabatic preparation showed increased B1+ sensitivity in T2 maps due to the rectangular pulses, whereas the fully adiabatic inversion showed residual B0 effects. The observed global T2 bias may reflect effects not captured by the simplified EPG signal model of the BIR-4 preparation, potentially including B0 effects and relaxation during the pulse. Future work will focus on improved modelling of the preparations and BIR-4 pulse optimization to reduce residual B0 sensitivity.

The fully adiabatic T2 prepared inversion shows potential to improve the spatial homogeneity of QuantoRAGE, particularly at ultra-high field, and warrants further investigation for multi-parametric mapping.
Natalia PATO MONTEMAYOR (Lausanne, Switzerland) , Tâm Johan NGUYÊN , José P. MARQUES , Bern Can AÇIKGÖZ , Jessica Am BASTIAANSEN , Roland KREIS , Piotr RADOJEWSKI , Jonathan STELTER , Dimitrios C. KARAMPINOS , Jocelyn PHILIPPE , Lina BACHA , Tommaso DI NOTO , Bénédicte MARÉCHAL , Patrick A. LIEBIG , Robin M. HEIDEMANN , Tobias KOBER , Jean-Philippe THIRAN , Tom HILBERT , Thomas YU , Gian Franco PIREDDA , Gabriele BONANNO
13:30 - 14:15 #54077 - P338 Accelerated direct mapping of myelin T1 using short-T2 VFA imaging with dual-TE subtraction.
P338 Accelerated direct mapping of myelin T1 using short-T2 VFA imaging with dual-TE subtraction.

The longitudinal relaxation time T1 is an established parameter in quantitative MR due to its excellent contrast between white matter (WM) and grey matter and its sensitivity to pathologies [1]. T1 of the aqueous signal probed in conventional MRI is affected by the size and relaxation of the myelin proton pool. Magnetization transfer (MT) between the semi-solid myelin and the aqueous pool results in a decrease of apparent aqueous T1.[2-7] Using dedicated short-T2 MRI methodology allows us to directly access the properties of the semi-solid proton pool. We previously presented myelin T1 mapping in brain samples with a short-T2 multi-TE variable flip angle (VFA) approach [8,9]. To obtain component-wise T1 maps, a three-component model (3-CM) was fitted to multi-TE data to separate MR signal contributions attributed to myelin, non-myelin macromolecules (MM) and water [10-12]. This approach provides robust characterization of signal components, but scan times of multiple hours pose limitations even for ex vivo measurements. Therefore, we explore the feasibility of myelin T1 mapping with dual-TE subtraction and compare it to the 3-CM fit. The dual-TE approach is based on the observation that signal at early TE^s contains short- and long-T2 components while later TE^l are dominated by long-T2 signal. This approach reduces the number of TE by a factor 6, significantly shortening scan time.

Subtraction of images acquired at different TE is a common approach for the separation of short- and long-T2 signal components [13]. Ideally, TE^s is kept short as possible, while TE^l is chosen such that the short-T2 signal has fully decayed. The difference between the signal at TE^l and TE^s is then dominated by short-T2 components. When fitting the 3-CM , the contribution of non-myelin MM at the first TE^s=32μs was found to be small compared to that of myelin and the T1 of the two MM components were found to be very similar. We therefore expect the short-T2 component from image subtraction to preserve the T1 characteristics of myelin, while the signal at late TE^l reflects the behavior of water. Two samples of frozen porcine brain tissue were thawed. One sample underwent almost complete exchange of H2O with D2O to minimize long-T2 signals. Single-point imaging was performed on a 3T Philips Achieva system with dedicated short-T2 hardware, including a high-performance gradient (220mT/m, 100% duty cycle) [10,14]. 14 TE between 33 and 2067us were acquired at flip angles (FA) between 2 and 22° each. A 3-CM fit was performed for each multi-TE series to separate the myelin, non-myelin MM and long water signal components. For the dual-TE subtraction method, the signal S(TE^l=827μs) was selected for the long-T2 component, while the short-T2 signal was given by the difference to the first TE S(TE^s=33μs)-S(TE^l=827μs). The steady-state signal equation was fitted to the signal component amplitudes as a function of FA to estimate T1. VFA fits were performed voxel-wise and for signal averages across WM ROIs. FA maps were obtained from a coil-specific B1-efficiency map scaled by sample B1-efficiency.

Figure 1 shows signal component amplitudes obtained at a representative FA in both samples. The contrast of the subtraction image is in very good agreement with the ultra-short-T2 component obtained by the 3-CM fit which is attributed to myelin. Similarly, there is good agreement in contrast of the late TE^l signal with the water component of the 3-CM fit. The results of the T1 mapping are shown in Figure 2. Again, we observe very good agreement of T1 maps obtained with dual-TE subtraction with the 3-CM fit for all samples and components. Figure 3 shows the results of the VFA fits for the signal averages over the WM ROIs which are summarized in Table 1. The ROI-averaged fits further demonstrate the good agreement between the two approaches.

The contrast observed for the signal components and corresponding T1 maps show very good agreement of the dual-TE derived components with the myelin and water component of the 3-CM. T1 values obtained for a WM ROI are also in excellent agreement. Note that the steady-state signal model fails to account for MT, resulting in systematic deviations in the long-T2 component in D2O and the short-T2 component in H2O. In the presence of pathologies, further investigation into the equivalence between the subtraction-based short-T2 and the myelin component of the 3-CM is needed.

Direct VFA-based mapping of myelin T1 was performed using subtraction of magnitude images acquired at two TE to separate short- and long-T2 signal components. The resulting T1 estimates are in excellent agreement with values for myelin and water from a full 3-CM fit of the signal decay. The dual-TE method translates into a scan time reduction by a factor 6 without noticeable loss in T1 specificity. Component-wise T1 maps can now be obtained in <1h making ex vivo measurements less susceptible to tissue changes and other sources of signal drift.
Lara Maria BARTELS (Zurich, Switzerland) , Markus WEIGER , Emily Louise BAADSVIK , Benjamin Victor INEICHEN , Klaas Paul PRUESSMANN
13:30 - 14:15 #54192 - P339 Development and Validation of a Tissue-Equivalent Relaxometry Phantom for Quantitative MRI Quality Control.
P339 Development and Validation of a Tissue-Equivalent Relaxometry Phantom for Quantitative MRI Quality Control.

Quantitative MRI enables tissue characterisation based on the measurement of relaxation parameters. However, its clinical application remains limited by the lack of standardised, validated quality control phantoms and procedures. Yet, the need for such procedures is critical given that scanner performance, sequence selection, post-processing methodology, and temperature variation can all influence measured relaxation values, hence affecting the accuracy and reliability of patient diagnosis and monitoring [1]. This study aimed to establish a quality control framework for T1 and T2 measurement through the development and validation of a tissue-equivalent relaxometry phantom and standard operating procedure (SOP) for routine quantitative MRI quality control.

Four NiCl₂-doped agarose gel solutions were formulated to cover a clinically relevant range of T1 and T2 values, with solution concentrations set using empirically derived linear relaxation rate models [2]. The tubes containing the solutions were housed in a custom 3D-printed insert within a spherical plastic container, positioned centrally within the magnet bore. Imaging was conducted over three sessions on a 3T Siemens MAGNETOM Vida MRI system using established sequences including inversion recovery spin echo (IR-SE), inversion recovery turbo spin echo (IR-TSE), and multi-echo spin echo sequences (MESE) [3]. Relaxometry values for each solution and sequence were compared to established benchmark values. Longitudinal stability was assessed over a three-month period. The impact of ambient temperature on relaxation times was studied, and an SOP was developed which included allowance for temperature variation.

The phantom demonstrated adequate structural and temporal stability throughout the study period. Measured T1 values remained within ±9% of starting values for both IR-SE and IR-TSE acquisitions, while T2 measurements remained within ±18%. Reproducibility remained high across repeated monthly measurements, with coefficients of variation below 3% for both T1 and T2 measurements. Furthermore, T1 values obtained using the accelerated IR-TSE protocol demonstrated strong agreement with those acquired using the longer IR-SE protocol. Both T1 and T2 decreased with cooling, with T2 showing greater higher variation.

The findings indicate that the proposed NiCl₂-doped agarose phantom is suitable for quantitative relaxometry calibration and validation, with the four-vial design covering a clinically relevant range of T1 and T2 values. The agreement between IR-SE and the accelerated IR-TSE protocol suggests that time-efficient T1 QC may be feasible without substantially compromising measurement accuracy, reliability or computational efficiency, which is important for clinical implementation when scanner availability is limited. Furthermore, the temperature findings highlight an important source of uncertainty in quantitative relaxometry. T1 increased with temperature, particularly in samples with longer T1 values and lower Ni²⁺ concentrations, where the intrinsic temperature sensitivity of water becomes more dominant. In contrast, T2 showed a stronger reduction with cooling, likely reflecting restricted water mobility and enhanced spin–spin dephasing within the agarose gel structure. These observations mandate that temperature be documented and possibly kept constant during longitudinal phantom based constancy testing. They also point to a broader limitation of qMRI interpretation in temperature-variable settings, such as hypothermia, fever, or cadaveric imaging.

This study establishes an initial framework for phantom-based quality control of quantitative T1 and T2 relaxometry on a clinical 3T MRI system. The proposed approach provides tissue-equivalent phantom materials, baseline relaxometry values, validated acquisition and post-processing methods, and a standard operating procedure for routine implementation. This framework would support local standardisation of qMRI measurements and provide a reference for future validation of qMRI techniques.
Valentina CAMILLERI (St Pauls Bay, Malta) , Nolan VELLA , Kristian GALEA
13:30 - 14:15 #54382 - P340 Comparative Quantitative T1 Mapping of 3d-Printed Phantoms and Numerical Simulations for Complex Geometries.
P340 Comparative Quantitative T1 Mapping of 3d-Printed Phantoms and Numerical Simulations for Complex Geometries.

In conventional 2d MRI, a cross-sectional slice through the tissue is imaged where contrast variations occur depending on tissue properties and the chosen pulse sequence and its parametrization. With the capacity to perform simulations of arbitrary shapes in k-space on one hand, and 3d-printing on the other, it is possible to further close the gap between simulations and actual measurements [7]. Here, we represent complex 3d tissue shapes of the brain by segmentation masks of WM, GM and CSF in the stl-fileformat which are based on real measurements [1]. The intersection of each tissue mask with an arbitrarily located 2d imaging slice leads to line segments which describe the boundaries between tissues within the slice and are the basis for k-space simulations and 3d-printed phantoms. In the past, the BART [2] simulation framework has been extended to include continuous Fourier transform methods eq. (1) of complex tissue shapes [1],[7] by representing the boundaries of the shapes by line segments eq. (3),(4), [9]. The BART forward moba-model tool [8] solves numerically the Bloch equations eq. (5) given the actual fields and their parametrizations which are played out during the sequence. We create a brain-tissue phantom by 3d-printing the shapes within the selected slice (fig 2) and different CA-concentrations for each tissue type and perform a measurement with our open source in-house IR-FLASH sequence [4] on radial RAGA [3] trajectories and compare the results with the k-space simulations.

Our method computes the intersection of an imaging plane with each tissue compartment of our 3d segmented brain-model based on data from a healthy volunteer with written informed consent [1]. The resulting 2d lineshapes describe tissue boundaries which are extruded in z-direction, 3d-printed and filled with Gadovist-injected destilled water with 0 Mmol/ml for CSF, 6.66e-7 Mmol/ml for GM, and 1e-6 Mmol/ml for WM compartments. The BART [2] sequence framework is used to create the IR-Flash sequence with TR=3.4ms,TE=2.04ms,FA=8 and radial RAGA trajectory [3] with 377 spokes per full frame and 5 full frames and is used for measuring the phantom [4]. For reconstruction of measurement and simulation data, sensitivity maps are estimated with NLINV [5] and a model-based fit estimates the 4 coefficients of the subspace basis for computation of Look-Locker T1 parameter [6] against coil-compressed k-space with 8 virtual channels on the gradient-delay corrected trajectory. The 2d lineshapes are used for creation of multi-coil k-space phantoms with BART and eq. (3),(4) for each tissue compartment by using the continuous Fourier transform eq. (1) on the trajectory and the forward moba-model based on the IR-FLASH sequence generated from the BART sequence framework eq. 3 [8]. For comparison, a pixel-based phantom is created eq. (2) and mapped on the RAGA trajectory with an nudft and weighted with the forward moba-model.

We found that our k-space moba-simulation of the NIST phantom compartments could be successfully validated against the reference NIST phantom by comparing their T1 mappings in figure 1. The red arrows in figure 1 show simulation errors at the boundaries. We successfully extended the phantom geometry to arbitrary complexity by 3d-printing a phantom which represents real brain tissue shapes in figure 2. While the k-space moba-model simulation T1 map deviates at the tissue boundary from the measured phantom T1 map, the pixel moba-model simulation T1 map shows larger variations on the boundary at the red arrows than the k-space simulation T1 maps.

We successfully implemented the imaging-plane-object intersection algorithm and obtained the tissue boundary line segments of the object shape which we used for realistic k-space simlulation in figures 1 and 3. We combined the k-space simulation with forward moba-model simulations of the Bloch Equations based on the integrated sequence framework in BART to simulate the magnetization evolution of the IR-FLASH sequence on radial RAGA trajectories and successfully validated the resulting subspace moba T1 mappings against real measurements. The red arrows in figure 1 show boundary artifacts which could not be created with the NIST phantom simulation since the stl files of the NIST phantom were not available to us. The 3d-printed phantom and corresponding k-space moba-model simulation however showed similar artifacts at boundaries between tissues in figure 3. The T1 map of the pixel simulation in figure 3 at the red arrows showed larger deviation from the real measurement which shows improved performance of the k-space simulation over pixel simulation.

We extended the BART simulation framework by including imaging-plane and object intersection algorithm and forward moba-model simulation based on the BART sequence framework which enabled us to obtain realistic k-space signals of complex tissue shapes based on our open source in-house IR-FLASH sequence.
Martin HEIDE (Graz, Austria) , Daniel MACKNER , Markus HUEMER , Buchegger VIKTORIA , Moritz BLUMENTHAL , Martin UECKER
13:30 - 14:15 #54681 - P341 Combined estimation of T2 and T2* using a GESSE sequence and EPG signal modelling.
P341 Combined estimation of T2 and T2* using a GESSE sequence and EPG signal modelling.

Decay of the MRI signal due to transverse relaxation follows an exponential form with time constants T2 and T2*. In the brain, estimates of T2 and T2* are driven by histological properties of the tissue and quantitative maps of T2 and T2* allow the monitoring of microscopic change in neurodegenerative diseases.[1] T2 signal decay arises from dipole-dipole interactions of water molecules with their surrounding and primarily reflect tissue myelination and water compartmentalization.[2] Additionally, T2* signal decay captures the effect magnetic material such as iron-rich cells, distributed at the microscopic scale within brain tissue.[3,4] Measures of T2 and T2* provide complementary information for the study of brain diseases.[5–7] Conventionally, T2 and T2* maps are computed from separate data, acquired using spin-echo (SE) and gradient echo (GRE) pulse sequences respectively.[8] However, the gradient-echo spin-echo (GESSE) sequence allows the simultaneous acquisition of SE and GRE data, that are used for the combined estimation of T2 and T2* using dedicated analytical signal models.[5,9–11] The GESSE sequence requires dedicated crusher gradient schemes and the maximum number of achievable SE is limited.[12,13] In this work, we use Extended Phase Graphs (EPG)[14] to jointly model SE and GRE data acquired with the GESSE sequence, allowing for a higher number of SE data than the conventional approach. The resulting maps of T2 and T2* are compared with reference estimates obtained from separate GRE and SE acquisitions.

A pulse diagram of the GESSE sequence is shown in Figure 1A. This sequence allows the acquisition, using bipolar readouts, of nSE SE images (echo times 1xTESE to nSExTESE) and of nGRE GRE images after the radiofrequency (RF) excitation pulse and on both sides of the SE. The signal equations – distinct for the GE data on either side of the SE – allow the combined estimation of T2* and T2. A dictionary of SE signals (echo times 1xTESE to nSExTESE) was obtained using EPG, for a range of T2 and B1 values of 30-200ms and 100-140%. respectively. The value of T1 in the EPG simulations had negligible effects on the fitting results and was set to infinity. Assuming negligible defocussing from the image encoding gradients compared to that from the crusher gradients, the GRE signal intensities adjacent to the SEs were added to the dictionary using the GESSE signal equations,[12] for T2* values ranging from 10 to 150ms. Estimation of T2 and T2* was conducted by matching the dictionary columns with the GRE/SE data at each voxel. MRI data were acquired on a homogeneous gel phantom and a healthy participant (male, 32years), using the GESSE sequence (nSE=4 spin echoes, nGRE=6 gradient echoes), a reference multi-GRE sequence for T2* mapping (nSE=0, nGRE=20), and a reference single-SE sequence for T2 mapping (nSE=1, nGRE=0). The reference single-SE data was acquired with echo time 50, 100, 150 and 200ms, consistent with the echo times of the GESSE data (TESE=50ms). The echo spacing of the bipolar readout of the GESSE and reference GRE sequences was 2.4ms. In-plane image resolution was 1.5mm and slice thickness was 2mm. Data was acquired from 10 neighbouring slices, acquired in an interleaved order and with a slice gap of 0.4mm. The slice thickness of the refocusing pulse was set to 200%.[15] The slice-to-slice TR was 250ms. The scan time was 4:03mins for the GESSE and reference GRE sequences, and 16:12mins for the reference single-SE sequence.

In the phantom data, no systematic bias of the T2 estimates is apparent between the GESSE and reference single-SE data (R2=0.01, Figure 2A). The distribution of T2 values is more narrow (standard deviation (SD): 0.82ms) than the single-SE data (SD: 2.74ms) (Figure 2B). A systematic bias is present between the T2* estimates from the GESSE and reference GRE data (R2=0.58). The SD of the distribution of T2* values was 2.81ms and 2.23ms for the GESSE and GRE sequences respectively (Figure 2B). In vivo, the T2 and T2* estimates from the GESSE are globally consistent with the reference values (Figure 3A). In white matter, a 5% bias between the T2 estimates from the GESSE and single-SE data is present (R2=0.46, Figure 3B).

Here we use Extended Phase Graphs for the combined estimation of T2 and T2* from GESSE data. In the gel phantom, the narrow distribution of T2 values may be the result of the increased number of sample points available for T2 estimation. In the in vivo data, the bias of the T2 in white matter may be the result of magnetization transfer (MT) effects.[16] The bias of the T2* estimates may arise from the number and echo time range of the gradient-echo data.

These preliminary results show estimates of T2 and T2* computed from GESSE data using Extended Phase Graphs. Future work will focus on optimizing sequence timing,[17] improving the EPG simulations to account for MT-effect and imperfect slice profile.[16]
Quentin RAYNAUD (Lausanne, Switzerland, Switzerland) , Quentin ROGLIARDO , Sylvain MORTGAT , Ludovica VERDE , Stanislas RAPACCHI , Jerome YERLY , Antoine LUTTI
Palau Sira
14:15

"Friday 02 October"

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I23
14:15 - 15:00

Poster 7
FT7 Body Applications

14:15 - 15:00 #54420 - P342 Beyond uniform corrections: sequence-dependent harmonisation in prostate mri radiomics.
P342 Beyond uniform corrections: sequence-dependent harmonisation in prostate mri radiomics.

Radiomics extracts quantitative data from medical images that can be used to build prediction models to assist clinical decision-making [1, 2]. However, varying institutional imaging methodologies and scanner hardware directly alter radiomic characteristics, mandating standardisation for clinical translation [2]. The impact of harmonisation on reproducibility remains a critical, yet undervalued, component of the analytical framework. Normalisation standards must mitigate both within-scan biological bias and between-scanner batch effects like the technical variations introduced by differing scanner vendors, acquisition protocols, and magnetic field strengths. Consequently, a critical gap exists for robust radiomics data harmonisation. This study aimed to validate a novel "sequential harmonisation" approach synergistically combining anatomical normalisation with statistical corrections. We systematically evaluated this approach against isolated anatomical and pure statistical pipelines across multi-institutional cohorts of T2-weighted (T2WI), Diffusion-Weighted Imaging (DWI), and Apparent Diffusion Coefficient (ADC) data to determine the optimal, sequence-dependent preprocessing strategy for prostate cancer (PCa) classification.

Biparametric MRI data (T2WI, DWI, and ADC maps) for a multi-centre retrospective cohort of 262 patients with PCa were aggregated from four institutional sources: public collections (TCIA Prostate-MRI [3, 4], SPIE-AAPM PROSTATEx [5]) and NHS cohorts (NHS Wales, NHS England [6]). DWI sequences comprised heterogeneous b-values (750, 800, 1000, 1400, and 2000 s/mm²). Radiomic features were extracted using the SPAARC (Spaarc Pipeline for Automated Analysis and Radiomics Computing) pipeline [7–9], which is compliant with both Image Biomarker Standardisation Initiative (IBSI) 1 and 2 standards, as implemented in the Hero image analysis software (v 2005.2.0, Hero Imaging AB, Umeå, Sweden) [10]. Six preprocessing pipelines were evaluated (Figure 1): 1) baseline, 2) anatomical normalisation via bladder intensity averaging (BIA), 3) anatomical normalisation via internal obturator muscle (IOM) averaging, 4) pure ComBat harmonisation [11], and two "sequential harmonisation" approaches: 5) synergistic BIA+ComBat, and 6) synergistic IOM+ComBat. Predictive modelling utilised a threshold-tuned, 25-iteration Monte Carlo cross-validation architecture with SMOTE and two-stage feature reduction (LASSO, mRMR) [12]. Random Forest (RF) and Support Vector Machine (SVM) algorithms were evaluated. Harmonisation methods were ranked using a Friedman Omnibus test and post-hoc pairwise analyses (FDR correction) [13].

Optimal harmonisation proved highly sequence dependent (Figure 2). For T2WI, sequential BIA+ComBat achieved the highest performance (RF Mean AUC: 0.8328). In the DWI cohort, pure ComBat emerged as the superior overall strategy (RF Mean AUC: 0.9456). However, subgroup analysis revealed distinct b-value dependency: in high b-value (b ≥ 1000 s/mm²) acquisitions, sequential BIA+ComBat outperformed pure ComBat (RF AUC: 0.8631), whereas pure ComBat remained superior for low b-value (b ≤ 800 s/mm²) scans (RF AUC: 0.9689). For ADC maps, pure ComBat remained dominant (RF AUC: 0.8421).

The optimal strategy is governed by the underlying tissue biophysics probed by each sequence. For T2WI, the fluid-filled bladder acts as a stable, hyperintense baseline, allowing BIA to standardise relative contrast before ComBat mitigates residual variance. For DWI, signal attenuation follows Stejskal-Tanner exponential decay [14]. At low b-values, T2 shine-through dominates; normalising against a highly variable fluid reference compresses the tumour's dynamic range and introduces noise, making pure ComBat the standard. Conversely, at elevated b-values (2000 s/mm²), free-flowing urine (D ≈ 3.0 × 10⁻³ mm²/s) undergoes near-complete signal decay (~0.2% retained), while restricted tumour tissue (D ≈ 0.8 × 10⁻³ mm²/s) retains significant signal (~20.1%) [15, 16] (Figure 3,4). Normalising against this suppressed reference creates mathematical instability, allowing BIA+ComBat to act as a non-linear contrast amplifier that stretches the dynamic range of retained features to yield optimal predictive accuracy. Finally, for the ADC maps (calculated directly from DWI), anatomical scaling errors automatically propagate, making pure ComBat the most reliable standard. Based on these findings, we establish clear preprocessing guidelines: sequential BIA+ComBat is recommended for T2WI and high-b DWI (b ≥ 1000 s/mm²), whereas pure ComBat alone should be applied to low-b DWI (b ≤ 800 s/mm²) and ADC maps.

Tissue biophysics fundamentally dictates the optimal radiomic harmonisation strategy. Sequential anatomical-statistical pipelines successfully standardise qualitative T2WI and high-b DWI contrast, whereas pure statistical harmonisation (ComBat) ensures robust predictive stability across low-b DWI acquisitions and quantitative ADC maps.
Solanki MITRA (CARDIFF, United Kingdom) , Marco PALOMBO , Kieran FOLEY , Emiliano SPEZI
14:15 - 15:00 #54399 - P343 Development and Internal Validation of a Multimodal AI Model for Pre-Biopsy Risk Stratification of Clinically Significant Prostate Cancer Using mpMRI Deep Features and Clinical Data.
P343 Development and Internal Validation of a Multimodal AI Model for Pre-Biopsy Risk Stratification of Clinically Significant Prostate Cancer Using mpMRI Deep Features and Clinical Data.

Multiparametric MRI (mpMRI) plays a central role in prostate cancer diagnostics and biopsy decision-making; however, equivocal lesions, particularly PI-RADS 3 lesions, remain diagnostically challenging and may contribute to unnecessary biopsies. This study evaluated whether deep bottleneck features extracted from nnU-Net models provide complementary information for pre-biopsy risk stratification of clinically significant prostate cancer (csPCa).[1-3]

This retrospective single-center study included 100 patients who underwent pre-biopsy mpMRI and histopathological evaluation, including 15 patients with clinically significant prostate cancer (csPCa). Deep bottleneck features were extracted from nnU-Net models trained on T2w, T2w + DWI/ADC, and T2w + DWI/ADC + DCE MRI sequences. Logistic Regression and XGBoost models using imaging features, clinical variables, or combined multimodal inputs were evaluated using repeated nested 5-fold cross-validation. Performance metrics included ROC-AUC, PR-AUC, Brier score, sensitivity, specificity, and decision curve analysis. Combined models were compared with clinical-only and PI-RADS-based approaches using DeLong testing.[4-11]

The best-performing model was a combined Logistic Regression model integrating selected T2w + DWI/ADC deep features with clinical variables, achieving an ROC-AUC of 0.765 ± 0.142, PR-AUC of 0.458 ± 0.214, and Brier score of 0.115 ± 0.028. Clinical-only models remained strong comparators, achieving a best ROC-AUC of 0.745 ± 0.141, whereas MRI-only models demonstrated lower and less consistent performance. Incremental performance improvements of combined models over clinical-only and PI-RADS comparators were not statistically significant. PSA-derived variables remained the most stable predictors, while selected deep MRI features provided complementary predictive information.

Deep MRI bottleneck features demonstrated modest but potentially complementary value for csPCa risk stratification when integrated with clinical variables. The strongest performance was achieved by low-dimensional multimodal models rather than MRI-only approaches, supporting a parsimonious modeling strategy in small datasets. Although combined models numerically outperformed clinical-only and PI-RADS comparators, differences were not statistically significant, likely reflecting limited statistical power. These findings suggest that deep bottleneck representations may capture complementary anatomical and diffusion-related information, but larger multicenter studies with external validation are required before clinical translation.

Clinical variables, particularly PSA-derived parameters, remained the strongest predictors for csPCa risk stratification. Deep bottleneck features demonstrated complementary predictive potential when integrated into low-dimensional multimodal models. Further multicenter validation is required to evaluate robustness and generalizability.
Bader SOBAHI (Frankfurt am Main, Germany) , Daniel GROENER , Thomas VOGL
14:15 - 15:00 #54142 - P344 Comparison of Diagnostic Performance of Malignant from Benign Prostatic Areas on Prostatic DWIs with Different b-Values between Complexed Signal Average and Conventional Reconstruction Methods.
P344 Comparison of Diagnostic Performance of Malignant from Benign Prostatic Areas on Prostatic DWIs with Different b-Values between Complexed Signal Average and Conventional Reconstruction Methods.

Diffusion-weighted imaging (DWI) has been suggested as more useful for differentiation between malignant and benign prostatic areas, when applied ultra-high b value as compared with standard b value (1-6). However, image qualities of DWI with higher b-values were relatively lower than that with standard b-value. Recently, complexed signal average (CSA) method has been developed and is tested to improve ADC measurement and normal structure visualization on DWI, especially applying higher b value. However, no one reported the capability of CSA for improving image quality, apparent diffusion coefficient (ADC) measurement accuracy and diagnostic performance of malignant from benign prostatic areas on DWI with higher b values. We hypothesize that CSA method has potentials for improving image quality, ADC measurement and diagnostic capability of malignant prostatic area on DWI with standard and ultra-high b-values. The purpose of this study was to directly compare quantitative and qualitative image qualities and differentiation capability of malignant from benign prostatic areas among prostatic DWIs obtained with and without CSA, when applied standard and ultra-high b values.

54 suspected prostatic cancer patients prospectively underwent DWIs with and without CSA method at standard (b= 1500 s/mm2: cDWI) and ultra-high (b=3000 s/mm2: UH-DWI) b values. Each DWI data was reconstructed by deep learning reconstruction (DLR). According to pathological results, 93 malignant areas and 93 computationally selected benign areas were determined. For quantitative image quality assessments, signal-to-noise ratios (SNRs) of malignant area and benign areas at transitional and peripheral zones (TZ and PZ) and contrast-to-noise ratio (CNRs) between malignant and benign areas at each zone were assessed by ROI measurements on all DWIs. Overall image quality, artifact and malignant area conspicuity were also evaluated by 5-point scales on each DWI. Then, all quantitative indexes were compared each other by Tukey’s HSD test. Each qualitative index was compared by Wilcoxon’s signed-rank test. Finally, ROC analysis was performed to compare diagnostic performance among all DWIs. Then, sensitivity, specificity and accuracy were compared among all DWIs by McNemar’s test.

Representative case is shown in Figure 1. Results of compared SNRs and CNRs among both DWIs with and without CSA are shown in Figure 2. At each b value, SNRs and CNRs on DWI with CSA were significantly higher than those without CSA at transitional zone (TZ) and peripheral zone (PZ) (p<0.05). Moreover, SNRs and CNRs of cDWI with CSA were significantly higher than those of UH-DWI with and without CSA at TZ and PZ (p<0.05). Figure 3 shows results of overall image quality artifact and lesion conspicuity comparisons. Overall image quality and artifact of cDWI with and without CSA showed significant difference with those of each UH-DWI (p<0.05). Results of ROC analysis and compared diagnostic performance among all DWIs are shown in Figure 4. Area under the curves (AUC) of cDWI with CSA (AUC=0.93) and UH-DWI with CSA (AUC=0.95) were significantly larger than that of cDWI without CSA (AUC=0.88, p<0.05). Moreover, AUC of UH-DWI with CSA was significantly higher than that of UH-DWI without CSA (AUC=0.92, p<0.05). Sensitivities (SEs) and accuracies (Acs) of each DWI with CSA (cDWI with CSA: SE=89.2%, AC=90.9%; UH-DWI with CSA: SE=90.3%, AC=93.0%) were significantly higher than those of cDWI without CSA (SE=82.8%, p<0.05; AC=86.6%, p<0.05).

CSA mainly improves image quality and differentiation capability of malignant from benign prostatic areas on DWI with standard and ultra-high b values.
Yoshiharu OHNO (Toyoake, Japan) , Natsuka YAZAWA , Kaori YAMAMOTO , Yuichiro SANO , Masato IKEDO , Masanori OZAKI , Takahiro UEDA , Masahiko NOMURA , Takeshi YOSHIKAWA , Daisuke TAKENAKA , Masahiro ENDO , Yoshiyuki OZAWA
14:15 - 15:00 #54488 - P345 Longitudinal Q-space trajectory imaging in patients with prostate cancer receiving definitive radiotherapy.
P345 Longitudinal Q-space trajectory imaging in patients with prostate cancer receiving definitive radiotherapy.

The apparent diffusion coefficient (ADC) from diffusion MRI is known to be unspecific for monitoring biological processes during and after radiotherapy [1], and may therefore be a suboptimal imaging biomarker for probing early treatment response. At b-values above 1000 s/mm2, diffusion kurtosis modelling can provide additional information on tissue microstructure [2]. Q-space trajectory imaging (QTI) extends diffusion tensor imaging and diffusion kurtosis imaging by separating the kurtosis into isotropic heterogeneity (MKI) and microscopic anisotropy (MKA), while also providing fractional anisotropy (FA) and microscopic fractional anisotropy (µFA) [3]. This separation of various contributions to diffusion MRI parameters allows for more specific characterization of tissue microstructure [4]. In an ongoing prospective clinical trial (NCT06220435), very high-risk prostate cancer patients receive androgen deprivation therapy (ADT) along with ultra-hypofractionated radiotherapy to the prostate, including a focal boost to the intraprostatic lesion. The purpose of this study was to perform an initial evaluation of longitudinal QTI of the intraprostatic lesion at three time points over the course of treatment in five patients.

Five patients diagnosed with very high-risk PI-RADS 4-5 lesions underwent three MRI examinations on a 3T Signa Architect (GE Healthcare, Milwaukee, WI, USA) using a 30 channel AIR anterior array coil and 40 channel posterior array coil. The first MRI session was used for treatment planning prior to the start of ADT. The second MRI was scheduled two weeks after start of ADT, in conjunction with start of radiotherapy. The third MRI was scheduled within 48 hours after fraction 4 of 7 of ultra-hypofractionated radiotherapy (prostate 42.7 Gy, intraprostatic lesion 49.0 Gy, pelvic lymph nodes 29.4 Gy and seminal vesicles 31.2 Gy). Diffusion MRI was performed with a SE-EPI pulse sequence allowing for arbitrary diffusion encoding waveforms with b-values (number of directions) 100 (12), 800 (30), and 1600 (40) s/mm2 with a mix of linear and planar b-tensor encoding. In-plane resolution was 2 × 2 mm2, slice thickness 4 mm, with field-of-view 320 × 320 mm2. TE/TR 124/4500 ms. Chemical-shift selective fat saturation, parallel imaging factor 2. Moreover, a clinical protocol was acquired in accordance with the PIRADS v2.1 guidelines [5]. The diffusion-weighted images were reconstructed from raw data using an in-house modification of the vendor-based reconstruction to allow for output of both magnitude and phase images. The phase was unwrapped using EDDEN (https://github.com/SPMIC-UoN/EDDEN) [6], denoised with MPPCA [7, 8] (https://github.com/Neurophysics-CFIN/MP-PCA-Denoising/), and motion corrected with Elastix [9]. Finally, QTI parameters were estimated using dVIEWR (Random Walk Imaging AB, Lund, Sweden). Regions of interest (ROIs) representing the intraprostatic lesion were contoured based on the clinical ADC and clinical high b-value DWI of each imaging session for quantitative analysis.

Longitudinal changes in QTI parameters were observed, as a visually distinct increase in the mean diffusivity (MD) and decrease in µFA and MKA (Figure 1). Quantitatively in the whole tumor ROI, there was a relative increase (smallest to largest between first and last session) in MD (19% to 60%) and decreases in µFA (2% to 19%), MKI (9% to 23%), and MKA (15% to 52%) of at least 4 of the 5 subjects (Figure 2).

QTI revealed longitudinal changes in MD, µFA, MKI, and MKA in the tumor over the course of the treatment. The decrease in µFA and MKA implies a change in microstructure from microscopic anisotropy to isotropic heterogeneity, an interpretation which cannot be drawn from the MD (or clinical ADC) alone. While QTI shows promise for providing additional microstructure parameters in the prostate, the model does not account for time dependent diffusion and the differences in diffusion time between the linear and planar tensor encoding [10]. This could result in confounding effects in the prostate, where there can be a large variability in the restriction of diffusion [11]. Our initial evaluation is limited by the low number of subjects. The trial is set to include 76 patients from two centers, providing more data for interpretation and evaluation against additional clinical variables and outcomes. Inclusion and analysis are ongoing.

QTI revealed longitudinal changes in prostate cancer, providing additional microstructure parameters that may complement ADC for radiotherapy response monitoring. To the best of our knowledge, this is the first study to report trends in longitudinal QTI parameters in prostate cancer during ADT and radiotherapy.
Ivan A. RASHID (Lund, Sweden) , Sacha AF WETTERSTEDT , Erik THIMANSSON , Filip SZCZEPANKIEWICZ , Camilla THELLENBERG KARLSSON , Karin SÖDERKVIST , Tufve NYHOLM , Patrik BRYNOLFSSON , Adalsteinn GUNNLAUGSSON , Lars E. OLSSON
14:15 - 15:00 #54724 - P346 Experimental and simulation-based thermal analysis of microwave ablation using tissue-mimicking phantom and ex-vivo liver models.
P346 Experimental and simulation-based thermal analysis of microwave ablation using tissue-mimicking phantom and ex-vivo liver models.

Microwave ablation (MWA) is a minimally invasive thermal therapy increasingly used for the treatment of primary and secondary liver tumors, especially when conventional therapies are not feasible. Understanding the thermal distribution generated during the ablation process is essential for improving treatment efficiency and predicting ablation zones. The aim of this work was to investigate and compare the temperature propagation during microwave ablation using experimental measurements and numerical simulations under controlled and biologically realistic conditions[1].

Experimental investigations were performed using both a self-developed tissue-mimicking agar phantom and ex-vivo liver tissue models. Temperature measurements were acquired during microwave ablation using multiple temperature sensors positioned at defined distances from the microwave antenna. In parallel, numerical simulation models reproducing the experimental setup were developed using COMSOL Multiphysics®. The geometry of the microwave antenna, the positions of the measurement points, and the distances between antenna and sensors were modeled according to the practical setup. Realistic thermal and electromagnetic material parameters of both the phantom and liver tissue, including thermal conductivity, permittivity, and dielectric properties, were implemented in the simulation models. Furthermore, identical boundary conditions such as microwave frequency, output power, ablation duration, and initial temperature were used in both simulation and experiment in order to achieve reliable comparability.

The experimental and simulated results demonstrated similar temperature evolution and comparable thermal propagation patterns during microwave ablation in both phantom and ex-vivo liver models. The morphology and extent of the ablation zones showed good agreement between simulation and experiment, with only minor deviations between measured and simulated temperatures. With increasing ablation duration, larger ablation zones and broader temperature distributions were observed in both experiment and simulation. Furthermore, the temperature profiles showed an exponential temperature increase during the ablation process. The comparison confirmed that the developed simulation models were able to reproduce the experimentally observed thermal behavior with satisfactory accuracy.

The similarity between the experimental and simulated thermal distributions demonstrates the reliability of the developed simulation models for the investigation of microwave ablation processes. The use of a tissue-mimicking phantom enabled controlled and reproducible thermal investigations, while the ex-vivo liver experiments allowed a more realistic analysis of thermal propagation under biological conditions. Minor deviations between simulation and experiment may be associated with temperature-dependent changes in tissue properties during heating, measurement uncertainties, and differences between the modeled and experimental antenna structures.

This project demonstrates the potential of simulation-assisted microwave ablation modeling for the investigation and optimization of thermal therapies. The combination of tissue-mimicking phantom studies, ex-vivo liver experiments, and numerical simulations represents a promising approach to improve the understanding of thermal behavior during ablation procedures and to support future treatment planning strategies. As a next step, the focus will be on integrating image-guided and MRI-guided microwave ablation approaches to enable improved monitoring and treatment of complex liver tumors.
Amira ALOUANE (Hagen, Germany)
14:15 - 15:00 #53524 - P347 Validation of MRI for quantification of biliary microlithiasis and sludge.
P347 Validation of MRI for quantification of biliary microlithiasis and sludge.

Biliary microlithiasis is defined by the presence of small stones (≤5 mm) in the biliary tree or gallbladder [1] and can cause pain, inflammation and acute pancreatitis [2]. This condition is typically imaged by endoscopic ultrasound, a relatively invasive procedure that involves passing a small camera and ultrasonic transducer down the throat and visualising the gallbladder from the stomach or duodenum [3]. Magnetic resonance imaging (MRI) has been proposed as a non-invasive alternative to endoscopic ultrasound [4] that not only provides excellent soft tissue contrast but also offers the potential for quantification of microlith burden. This research focuses on the validation of MRI for use in the diagnosis and monitoring of biliary microlithiasis and sludge. Model gallbladders representing different disease states have been prepared, vigorously shaken and imaged on a 3 T MRI scanner. Temporal changes in signal intensity were analysed as the particulate matter settled, replicating the dynamics of microlithiasis. The long-term objective is to develop a clinically applicable quantitative metric enabling clinicians to utilise spatial intensity profiles observed within the gallbladder for accurate diagnosis and potentially even staging of biliary microlithiasis.

40 mL model gallbladders were prepared using varying ratios of water and glycerol to create a range of viscosities from 1.06 mPa.s to 45 mPa.s. Additionally, glass beads ranging in size from 75 µm to 3 mm were added in varying quantities (up to 9 g) to represent a range of disease states, including some exaggerated cases. The models were shaken and imaged on a 3 T MRI scanner (MAGNETOM Lumina, Siemens Healthineers) using T1 vibe and T2 haste sequences at 30-second intervals, to visualise the glass beads settling over time. The intensity and heights of the three phases observed in the gallbladder models (liquid, suspension and solid) were extracted using MicroDicom DICOM Viewer 2023.1.1.

Three distinct phases (liquid, suspension and solid) were observed in the 45 mPa.s gallbladder models containing 2-9 g of either 75 µm or 300 µm beads (Figure 1). As time progressed, the liquid and solid phases increased in height linearly and the suspension phase decreased in height linearly. The rate of change in phase height was slowest for the smallest particles (Figure 2). The intensity of the suspension phase decreased linearly with total bead mass (Figure 3), suggesting that this value could be used to quantify solid mass within the gallbladder.

Settling of glass beads between 75 µm and 3 mm in size was observed by phantom MRI of a range of gallbladder models. Settling occurred at the slowest rate for the smallest bead size (75 µm), suggesting that rate of change of phase height could be a useful value in non-invasively determining microlith size. The intensity of the suspension phase was found to be inversely proportional to the total bead mass in the model, suggesting that intensity measurements across the gallbladder could be used to non-invasively determine total solid mass in the gallbladder and hence stage microlithiasis. Importantly, the intensity of the phases remained constant over time, suggesting that a time element would not be required in the clinical application of this staging metric, significantly simplifying the practicality of its implementation.

This work contributes to existing efforts to validate MRI for use in the diagnosis, monitoring and staging of biliary microlithiasis. The phantom images acquired in this project have demonstrated the potential for intensity profiles to be used to determine the total solid mass in the gallbladder. If applied to patient scans, this quantification of microlith burden could support clinicians in making better-informed decisions on the best course of action for patients with biliary microlithiasis. Future work will focus on applying this novel staging metric to patient images.
Hannah RICKMAN , Sarah UPSON (Bournemouth, United Kingdom)
14:15 - 15:00 #54441 - P348 Identification of MRI biomarkers for the non-invasive diagnosis of MASH and their correlations with associated histological lesions: Preliminary results.
P348 Identification of MRI biomarkers for the non-invasive diagnosis of MASH and their correlations with associated histological lesions: Preliminary results.

MASLD has become a major public health concern worldwide with a steadily rising incidence [1]. Its progression to MASH is of clinical importance, histologically characterized by hepatic steatosis associated with lobular inflammation and hepatocyte ballooning. As MASH is associated with an increased risk of cirrhosis and liver-related complications as hepatocellular carcinoma, its accurate identification is essential. Despite its invasive nature and limitations, liver biopsy remains the reference standard for MASH [2] diagnosis because it is currently the only method allowing assessment of inflammation and ballooning. While reliable non-invasive methods are available for quantifying steatosis and fibrosis [3,4], no validated non-invasive method currently allows accurate assessment of inflammation and ballooning. The aim of our study is to identify new MRI biomarkers for the non-invasive diagnosis of MASH and evaluate their correlation with histology.

The study was approved by the local ethics committee, and written informed consent was obtained from all participants . The study included 13 patients with MASLD and suspicion for MASH at Angers University Hospital between October 2025 and April 2026. MRI examinations were performed on a 1.5T clinical MRI scanner (Magnetom Sola, Siemens Healthineers, Erlangen, Germany). The clinical protocol includes the following sequences on the liver: - A 3D MRE sequence performed at a mechanical vibration frequency of 60 Hz, providing 4 biomarkers: liver stiffness (LS), storage modulus (SM), loss modulus (LM), and damping ratio (DR). - Two 2D MRE sequences with EPI-SE and GRE readouts providing two Liver Stiffness values. - A 3D VIBE Dixon sequence for a two-compartment (water-fat) quantification of T1 and T2* in the liver, thereby providing 5 biomarkers: PDFF, T1w, T1f, T2*w, T2*f. - A B1 mapping sequence for implementing T1 correction using the B1MM method [5]. - A multi-slice, multi-echo spin echo sequence for calculating the T2; - A magnetization transfer sequence providing the magnetization transfer ratio (MTR). Table 1 summarizes the parameters of the protocol sequences. Box plots comparing the 16 previous MRI biomarkers were made for the two groups of patients (MASH and non-MASH). Differences between groups were assessed using the nonparametric Mann-Whitney test, with the following significance levels: (*): 0.01 < p-value < 0.05; (**): 0.001 < p-value < 0.01; (***): p-value < 0.001. Pearson linear correlation analysis was then performed for each MRI biomarker with the scores of the various histological parameters of MASH (steatosis, inflammation, ballooning, and NASH-CRN the 2 histological score; NAS and SAF score, to assess the relationship between each MRI biomarker and the score.

Of the 16 biomarkers evaluated, 4 demonstrated statistically significant differences between the MASH and non-MASH groups: the T2* of the water compartment (T2*w), DR, LS measured with 3D MRE, and SM (Fig.1). Correlation analysis (see Fig.2) shows a very strong correlation of T2*w and the 3D MRE biomarkers (DR and LS) with the NASH-CRN fibrosis score,. These 4 biomarkers exhibit a strong correlation with the degree of ballooning. T2*w and DR show the strongest correlation with ballooning, with a negative correlation for DR. The correlations with steatosis and inflammation remain weak to moderate. In addition, DR shows a strong correlation with the NAS score and the SAF score.

This study correlates MRI MASH biomarkers to different histological parameters of MASH. T2*w, DR, LS, and SM are useful MRI biomarkers for the non-invasive diagnosis of MASH, correlated with a specific grade of MASLD and disease activity. Interestingly, a previous study reported that DR, measured with 3D MRE at 60 Hz, combined with other biomarker into a score, could be usefull for the diagnosis of MASH [6]. We demonstrated here also its utility as a standalone biomarker, strongly correlated with hepatocyte ballooning. As expected, [7], 3D MRE also correlated with fibrosis. T2*w also appears to be a potentially diagnostic biomarker for MASH as it is strongly correlated with ballooning. T2* values are usually used for the quantification of iron overload in the liver [8,9]. A slight increase of iron could occur in MASH, but our study is the first to highlight also correlation of T2*w with ballooning. This correlation could be explained by increased local homogeneity of liver tissue due to the large size of the ballooned cells, leading to slower T2* relaxation. Of course, the main limitation of this study is the small number of patients included, as a preliminary study. But we would like to share these preliminaries data to encourage MR biomarkers assessment in the non-invasive diagnosis of MASH.

These preliminary results showed that liver T2*w and 3DMRE biomarkers, especially DR, are correlated to histological parameters of MASH and therefore could be used as non-invasive tools for the diagnosis of MASH.
Kouame Ferdinand KOUAKOU (Angers) , Hervé SAINT-JALMES , Christophe AUBE , Anita PAISANT
14:15 - 15:00 #54430 - P349 Multifrequency MR elastography for ex Vivo bowel mechanical characterization.
P349 Multifrequency MR elastography for ex Vivo bowel mechanical characterization.

Magnetic Resonance Elastography (MRE) is an MRI-based technique used to estimate tissue mechanical properties through the analysis of shear-wave propagation: the microscopic displacements in tissue, due to wave propagation, are encoded using motion encoding gradients (MEG) [1]. Although widely applied in the liver and brain [2], its use in bowel imaging remains limited [3,4]. Gastrointestinal diseases such as inflammatory bowel disease (IBD) are associated with alterations in tissue biomechanics due to chronic inflammation and fibrosis of the intestinal wall. In Crohn’s disease (CD), progressive fibrosis may lead to bowel strictures requiring surgical resection, making accurate lesion characterization essential for therapeutic decision-making [5,6]. The aim of this study was to develop and validate an ex vivo MRE protocol on porcine bowel samples prior to future investigations on pathological human bowel specimens resected during surgical procedures. Mechanical properties were reconstructed using the kMDEV inversion algorithm[7] and differences between colon and intestine were analyzed.

Ten non-pathological bowel samples obtained from five different pigs, including both colon and small intestine, were provided by the Nancy School of Surgery. Samples were refrigerated for a few days prior to image acquisition. They were scanned at room temperature. Specimens were approximately 10–20 cm in length, 2–3 cm in width, and were approximately 1 cm thick. Experiments were performed on a 1.5 T MR scanner (MAGNETOM Avantofit, Siemens Healthcare, Erlangen, Germany) using the Resoundant acoustic wave delivery system (Resoundant Inc., Rochester, MN, USA). Coronal acquisitions included standard MR enterography sequences for anatomical visualization, and an SE-EPI based MRE sequence using multifrequency acquisitions performed at 80, 90, 100, 110, and 120 Hz with eight temporal phase offsets. A head matrix coil was used for signal reception. Motion-encoding gradients were applied in the through-slice direction. Echo time was 38 ms, repetition time, and number of slices were set to 2000ms, and 20. The number of cycles was adjusted according to vibration frequency (8–12 cycles for 80–120 Hz). Main MRE acquisition parameters included a 250 × 250 mm² field of view, a 256 × 256 acquisition matrix, and 2 mm slice thickness. Wave propagation quality was assessed using motion signal-to-noise ratio (SNRmotion > 3) [8]. SWS maps were reconstructed using the Bioqic tomoelastography processing pipeline [9].

Using the k-MDEV reconstruction method, quantitative maps of shear-wave speed (SWS, m/s), reflecting tissue stiffness, were successfully obtained for all samples. Mean SWS values were 2.19 ± 1.31 m/s for colon and 1.29 ± 0.55 m/s for small intestine. Data normality was confirmed using the Shapiro–Wilk test. A statistically significant difference in stiffness between colon and small intestine samples was observed (paired t-test, p = 0.003) (Figure 1). These findings support the feasibility of using porcine bowel tissue for MRE protocol optimization.

Porcine tissue is considered a relevant translational model for MRI protocol development [10,11]. In contrast to bowel segments affected by IBD, which typically exhibit thickening due to fibrosis and inflammation, healthy porcine bowel walls remain relatively thin, making these MRE acquisitions more challenging. Despite these limitations, tomoelastography (k-MDEV reconstruction) enabled stable wave visualization and quantitative stiffness mapping across all samples. Biomechanical differences are observed between colon and small intestine specimens, suggesting the colon has a higher stiffness. Tensile tests carried on the colon and intestine seem to support our results [12]. These differences may be explained by their distinct physiological functions which expose the colon to greater mechanical stress [13]. Differences in collagen content and extracellular matrix organization may also contribute to these mechanical variations [14].

This study demonstrates the feasibility of multifrequency MRE for ex vivo bowel stiffness assessment under clinically relevant acquisition conditions (80–120 Hz). Ex vivo porcine bowel represents a suitable model for the optimization of future MRE protocols dedicated to diseased, resected bowel samples. Quantitative mechanical characterization of bowel tissue may ultimately enable correlations with preoperative MRI biomarkers, histopathological findings, and clinical disease severity.
Sarah MAGUIABOU FETSE (Vandoeuvre-lès-Nancy) , Freddy ODILLE , Jacques FELBLINGER , Valérie LAURENT , Pauline LEFEBVRE
14:15 - 15:00 #54594 - P350 AI combined with MRI delta-radiomics model for predicting pathological complete response in locally advanced rectal cancer patients after neoadjuvant therapy.
P350 AI combined with MRI delta-radiomics model for predicting pathological complete response in locally advanced rectal cancer patients after neoadjuvant therapy.

Magnetic resonance imaging (MRI) plays a key role in the evaluation of locally advanced rectal cancer (LARC) before and after neoadjuvant therapy (NAC). Automated segmentation and radiomics may improve reproducibility and support response assessment. This study evaluates the agreement between expert and deep learning–based segmentations and investigates the predictive value of stable delta radiomic features for post-treatment tumor stage.

Pre- and post-NAC MRI scans from 20 LARC patients were analyzed. Tumor segmentations were performed by an expert radiologist and automatically generated using nnU-Net [1]. Automatic masks were processed through a dedicated repository [2] to combine segmentations and reconstruct RTSTRUCT DICOM objects, enabling standardized comparison (Figure 1 in supplementary materials). Segmentation agreement was assessed using the Dice similarity coefficient (DSC). Lesion size was estimated from automatically segmented volumes. Radiomic features were extracted using SPAARC [3], and feature stability between manual and automatic segmentations was evaluated using the intraclass correlation coefficient (ICC), considering ICC > 0.80 as stable. Delta radiomic features were computed between pre- and post-NAC scans. A univariate logistic regression model [4] was used to evaluate the predictive value of stable delta features for post-treatment tumor invasion (TN), available in 16/20 patients and dichotomized (T ≥ T3c vs lower stages).

Pre-treatment segmentation agreement showed a median DSC of 0.71 (IQR: 0.57–0.76), while post-treatment agreement decreased to 0.44 (IQR: 0.33–0.61). Automatically segmented lesion diameters were consistent across timepoints (pre: median 85.20 mm, IQR: 79.04–89.25 mm; post: median 83.56 mm, IQR: 77.41–91.38 mm). Radiomic analysis identified 37/183 stable features pre-NAC, 66/183 post-NAC, and 19/183 delta features. Among these, the delta feature stat_range showed significant predictive performance for TN stage (p = 0.03, b=-0.01), with AUC = 0.77 (Figure 2 in supplementary materials).

In this pilot cohort, segmentation variability between expert and deep learning–based contours was moderate before treatment and decreased substantially after neoadjuvant therapy, likely reflecting therapy-induced fibrosis, edema, and tumor fragmentation that make post-NAC tumor boundaries less conspicuous on MRI. Despite this variability, a subset of radiomic features demonstrated high stability (ICC > 0.80), supporting the robustness of selected quantitative descriptors across segmentation methods. Notably, delta radiomics—capturing longitudinal changes rather than static tumor characteristics—retained discriminatory capability, suggesting that treatment-induced biological modifications may be more informative than absolute feature values. The significant association of the delta feature stat_range with advanced residual tumor stage (T ≥ T3c) indicates that variations in intratumoral intensity distribution over time may reflect persistent aggressive components. These findings highlight the potential of stable delta radiomic features to mitigate the impact of segmentation inconsistencies and reinforce the value of longitudinal quantitative imaging biomarkers in response prediction. Nonetheless, the limited sample size and univariate modeling approach warrant cautious interpretation and call for validation in larger, multicenter datasets with multivariable analyses.

Despite moderate inter-method segmentation agreement—particularly after neoadjuvant therapy—MRI-derived delta radiomic features demonstrated stability and predictive potential for post-treatment tumor stage. Notably, the delta feature stat_range showed significant discrimination of advanced residual invasion. These findings suggest that robust delta radiomics may retain prognostic value even in the presence of segmentation variability, supporting their potential role in MRI-based response assessment workflows. Larger studies are warranted to validate these preliminary results and confirm their clinical applicability.
Salvatore LAVALLE (Enna, Italy) , Alfonso BELARDO , Serena PEPE , Carla ROMANO , Luca CRIMI , Edoardo SCIBILIA , Moreno LAQUATRA , Edoardo MASIELLO , Ernico Maria DI MAGGIO
14:15 - 15:00 #54140 - P351 How To Improve Prediction Capability for Patient’s Outcome in Postoperative Stage I NSCLC Patients with Different Molecular Information on MRI with PET/CT.
P351 How To Improve Prediction Capability for Patient’s Outcome in Postoperative Stage I NSCLC Patients with Different Molecular Information on MRI with PET/CT.

Lung cancer has emerged as the major cause of cancer- related mortality across the globe (1). For patients with non-small-cell lung cancer (NSCLC) diagnosed in an early stage and selected patients with locally advanced stage disease, surgical resection is the treatment of choice. Depending on the stage, neoadjuvant or adjuvant chemotherapy is part of a multimodal treatment concept and leads to an improved prognosis. Therefore, different imaging techniques have been used for postoperative recurrence evaluation such as quantitatively or qualitatively assessed computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET) and PET fused with CT or MRI by means of 2-[fluorine-18]-fluoro-2-deoxy-D-glucose (FDG-PET, FDG-PET/CT or FDG-PET/MRI),and MRI. Since 2016, chemical exchange saturation transfer (CEST) has been introduced as a new technique for providing more detailed physiological and functional information than conventional MR imaging and has become prominent in the field of molecular imaging for not only tissue characterization, but also therapeutic effect prediction in thoracic oncology including NSCLC (2-4). However, no one reported the capability of amid proton transfer (APT) weighted imaging from CEST (APTw/CEST) imaging for postoperative recurrence prediction in NSCLC patients. We hypothesized that APTw/CEST imaging may have potential for predicting postoperative recurrence on NSCLC as well as DWI and FDG-PET/CT and that combining the recurrence predictors can enhance their performance capability. The purpose of this study was to directly and prospectively compare the capability of single and combined information from APTw/CEST imaging, diffusion-weighted imaging (DWI) and FDG-PET/CT for predicting postoperative recurrence in NSCLC patients.

79 pathologically diagnosed and surgically treated NSCLC patients underwent CEST imaging, DWI and FDG-PET/CT as preoperative examinations, follow-up and pathological examinations. According to the follow-up and pathological examination results, all patients were divided as recurrence (n=13) and non-recurrence (n=66) cases. In each lesion, magnetization transfer ratio asymmetry (MTRasym) at 3.5ppm, apparent diffusion coefficient (ADC) and maximum value of standard uptake value (SUVmax) of each nodule were assessed. Then, multiple logistic regression analysis to determine significant predictors was performed. Then, ROC analysis was performed to compare among all indexes and combining predictors. Cox proportional hazards regression analyses for recurrence free survival (RFS) and overall survival (OS) were performed.

Representative case is shown in Figure 1. Results of multiple regression analysis for distinguishing recurrence from non-recurrence cases are shown in Figure 2. MTRasym at 3.5ppm, ADC and SUVmax were determined as significant predictors (p<0.05). Figure 3 shows differentiation capability of recurrence from non-recurrence cases among each index and combined descriptor method. Area under the curve (AUC) of combined predictor method (AUC=0.98, p<0.05) was significantly larger than that of others (MTRasym at 3.5ppm: AUC=0.88, ADC: AUC=0.9, SUVmax: AUC=0.78). Figure4 demonstrates results of Cox proportional hazards regression analysis with multivariate analysis for recurrence-free survival and overall survival. On multivariate analyses, RFS and OS determined MTRasym at 3.5ppm and SUVmax as significant predictors (p<0.05), although T-category (p=0.03) was also identified as predictor for OS.

APTw/CEST imaging showed similar performance to DWI and FDG-PET/CT for predicting postoperative recurrence in stage I NSCLC patients.
Masahiro ENDO , Yoshiharu OHNO (Toyoake, Japan) , Natsuka YAZAWA , Kaori YAMAMOTO , Yuichiro SANO , Masato IKEDO , Masanori OZAKI , Masao YUI , Takahiro UEDA , Masahiko NOMURA , Takeshi YOSHIKAWA , Daisuke TAKENAKA , Yoshiyuki OZAWA
14:15 - 15:00 #54512 - P352 Impact of regularized parallel imaging reconstruction on cardiac diffusion tensor imaging parameter maps.
P352 Impact of regularized parallel imaging reconstruction on cardiac diffusion tensor imaging parameter maps.

Diffusion MRI of the heart was first described over 30 years ago [1]. Continuous progress has been made to overcome the imposed technical challenges such as deformation and displacement of the myocardium during the cardiac cycle and due to respiration, signal inhomogeneity within the thorax, and overall low SNR [2,3]. With the goal to assess and quantify myocardial mesostructure and mesofunction [4], precise cardiac diffusion tensor imaging (cDTI) parameter maps have become essential. Here, we demonstrate how advanced reconstruction of free-breathing cardiac diffusion weighted imaging (cDWI) affects resulting cDTI parameter maps.

After obtaining informed consent, we recorded free-breathing cDWI data using a real-time slice-following SE-EPI navigator-based sequence [5] of 10 apparently healthy volunteers on a 3T scanner (Siemens Healthineers, MAGNETOM Skyra, Erlangen, Germany). Short-axis cardiac diffusion weighted images were acquired using the following parameters: slice thickness = 6 mm, matrix size = 128x128, FoV = 300x300 mm$^2$, TE = 73 ms, parallel imaging acceleration (GRAPPA factor 2, 24 reference lines), partial Fourier factor = 6/8, and 5 signal averages to improve SNR. The diffusion scheme comprises 1 non-diffusion weighted image (b = 0 s/mm$^2$) and a minimum of 6 diffusion-encoding directions at b = 350 s/mm$^2$, closely following the consensus statement from the Society for Cardiovascular Magnetic Resonance [3]. The obtained k-space data was reconstructed offline using the Berkeley Advanced Reconstruction Toolbox (BART) [6]. Coil sensitivities were estimated from the reference scan data using ESPIRiT [7]. Image reconstruction was performed with parallel imaging compressed sensing [8] using $\ell_1$-wavelet regularization [9]. Both offline (ESPIRiT) and online (GRAPPA) reconstructed cDWI data was denoised (Marcenko-Pastur PCA)[10] and motion-corrected (Symmetric Diffeomorphic Registration) [11] on the low b-value acquisition before averaging. Diffusion tensor was calculated from 2x interpolated averaged images using DIPY [12,13]. Cardiac diffusion tensor imaging parameter maps where then calculated from tensor maps based on ESPIRiT and GRAPPA reconstructions, respectively.

The resulting cDWI using ESPIRiT are of similar image quality compared to the reconstructed images using GRAPPA, albeit with less noise, in particular in the myocardium (see Fig. 1). The calculated cDTI parameter maps from GRAPPA and ESPIRiT reconstruction are presented in Fig. 2. In the fractional anisotropy (FA) and mean diffusivity (MD) maps, we see less signal contributions from the lumen of the left and right ventricle for the ESPIRiT reconstructed maps, indicating, that noise contributions from blood were suppressed successfully using $\ell_1$-wavelet regularization. In addition, the helix angle (HA) and absolute sheetlet angle (E2A) parameter maps are overall smoother and more homogeneous for the ESPIRiT versions.

While noise contributions seem to be suppressed more effectively in the ESPIRiT reconstructed versions, the impact of regularization on HA and E2A parameter maps is less pronounced. For offline reconstruction, regularization strength needs to be chosen carefully to not loose important (anatomical) details or introduce a bias while achieving a sufficient level of noise suppression. Although the results presented here demonstrate the sensitivity of cDTI parameter maps to the choice of reconstruction method, the scope of this analysis remains limited and no definitive conclusions can be drawn at this point. A systematic study on a phantom mimicking myocardial diffusion properties and fiber and sheetlet orientations will provide more extensive and detailed insights. Simultaneously, a proof-of principal clinical trial will provide insight into the added value of cardiac diffusion MRI for the assessment of structural changes of the myocardium.

We demonstrate how advanced reconstruction of cardiac diffusion weighted imaging k-space data can affect resulting cDTI parameter maps. This example here focuses on coil estimation using ESPIRiT and parallel imaging compressed sensing using $\ell_1$-wavelet regularization. Using BART, other regularization approaches like spatio-temporal total variation across diffusion directions, total generalized variation or low-rank approaches, could be applied in the future.
Vitali TELEZKI (Göttingen, Germany) , Eyck RODENWALDT , Daniel MACKNER , Kevin MOULIN , Martin UECKER , Joachim LOTZ
14:15 - 15:00 #54296 - P353 Molecular MRI signatures of fibrosis to detect heart failure and response to treatment.
P353 Molecular MRI signatures of fibrosis to detect heart failure and response to treatment.

Cardiac fibrosis, characterised by deposition of collagen types I (COL1) and III (COL3), drives heart failure after myocardial infarction (MI)[1-3]. Cardiac magnetic resonance (CMR) is the clinical standard for non-invasive assessment of fibrosis, but it provides only indirect measures and does not differentiate collagen composition. Molecular MRI probes targeting COL1 or COL3 have been validated individually[4,5]; however, they have not been combined to enable assessment of both collagen subtypes within the same animal subjects. This limits our understanding of spatial and subtype-specific collagen remodelling after MI and in response to therapy. Chordin-like 1 (Chrdl1) is a cardioprotective factor that attenuates fibrosis and improves cardiac function post-MI when delivered using adeno associated vectors 9 (AAV9)[6]. Here, we explore a dual molecular MRI approach targeting COL1 and COL3 to characterise collagen subtype distribution after MI and to evaluate fibrotic remodelling following systemic AAV8-mediated Chrdl1 delivery. Unlike AAV9, AAV8 target the liver and result in prolonged systemic expression of Chrdl1.

To assess liver-directed transgene expression, naïve mice received AAV8-Chrdl1 or AAV8-empty control intravenously (n=3/group; 1x1012 viral genomes/animal). Livers were harvested 10 days post-injection for RT-PCR analysis. In another cohort, MI was induced by permanent coronary artery ligation followed by intravenous injection of AAV8-Chrdl1 or AAV8-Control (dose: 1x1012 viral genomes/animal). Four weeks post-MI, functional and molecular CMR was performed using a 3T clinical MRI scanner (n=4/group). Left ventricular function and geometry were assessed from 2D short-axis cine images. Molecular imaging comprised T1-weighted 3D inversion recovery late gadolinium enhancement after administration of a COL3-targeted probe (0.2 mmol/kg), and after injection of COL1-targated probe 24 hours later (20 μmol/kg). Hearts were collected for histological assessment of fibrosis and livers were analysed for transgene expression by RT-PCR.

AAV8-mediated delivery resulted in robust hepatic expression of Chrdl1, which increased over time, reaching a 3.8-fold higher level at 26 days compared with 10 days post-injection, Fig. 1A. Functional CMR demonstrated a modest improvement in ejection fraction in Chrdl1-treated mice, with no significant differences in end-diastolic or end-systolic volumes between groups, Fig. 1B. Dual molecular MRI successfully detected both collagen subtypes within the same animals. While overall COL1 and COL3 signal extent at four weeks post-MI was comparable between the groups, differences in the spatial distribution were observed: COL3 signal predominated in the apex, whereas COL1 signal was more prominent at the base, Fig. 1C. Deposition of collagens was confirmed by histology, Fig. 1D.

This study demonstrates the feasibility of molecular MRI of COL1 and COL3 in the same animal, enabling non-invasive mapping of collagen subtype distribution after MI. Despite sustained hepatic expression of Chrdl1, AAV8-mediated delivery did not reduce cardiac fibrosis at four weeks post-MI, suggesting that either later time points, higher expression levels, or alternative delivery strategies may be required to elicit antifibrotic effects. The observed spatial distribution of COL1 and COL3 highlights the added value of collagen subtype imaging beyond total fibrosis.

Dual molecular MRI of collagen subtypes enables non-invasive characterisation of scar composition after MI. This strategy reveals spatial heterogeneity in collagen remodelling that is not captured by conventional imaging and offers a valuable tool for mechanistic and therapeutic studies of cardiac fibrosi
Nadia CHAHER , Nadia CHAHER (London, United Kingdom) , Joana Cartaxo SERRALHA , Giuseppe DIGILIO , Francesca BORTOLOTTI , Lorena ZENTILIN , Izabela KRASZEWSKA , Ling GAO , Mauro GIACCA , Alkystis PHINIKARIDOU
14:15 - 15:00 #54275 - P354 Sodium MRI of patellar tendinopathy at 3T: Preliminary Results.
P354 Sodium MRI of patellar tendinopathy at 3T: Preliminary Results.

Patellar tendinopathy is a common sports injury [1] with many patients experiencing long-term implications [2]. Often, diagnosis occurs at a later stage, after the injury progression is already advanced [3]. Sodium MRI is a functional imaging technique that can provide physiological information. In clinical research sodium MRI is used in musculoskeletal imaging for tissues such as cartilage and muscles [4]. It has the potential for early diagnosis, because it is sensitive to the biochemical changes that precede the structural alterations of tendinopathy visible in clinical standard imaging [5]. Previous studies have applied sodium MRI to the Achilles tendon, demonstrating its ability to differentiate between patients and healthy controls [6], [7]. The aim of our study was to adapt sodium MRI for use with the patellar tendon, and to determine the differences between patients with patellar tendinopathy and healthy controls.

Seven patients with patellar tendon tendinopathy and twenty healthy controls underwent imaging on a 3T MRI (Siemens MAGNETOM Prisma, Siemens Healthineers, Erlangen, Germany). A dual-tuned 23Na/1H surface coil (RAPID Biomedical GmbH, Rimpar, Germany) was used to acquire sodium and proton images for segmentation, using a density adapted 3D radial sequence (DA-3D-RAD) [8]. Sodium images were acquired at a resolution of 2 x 2 x 2 mm3 with a TE/TR of 0.1 ms/20 ms. Proton images were acquired at a resolution of 1 x 1 x 1 mm3 and four TEs [0.1/3.0/6.0/9.0] ms to facilitate additional 1H T2* measurements. The images were reconstructed using a Hamming Filter [8]. The sodium images were zerofilled to the proton resolution before reconstruction. A voxelwise partial volume correction (PVC) called the estimated single target correction (eSTC) [9] was applied to the sodium images. This method corrects spill-over artifacts by estimating the actual signal distribution of the target tissue and its surroundings. Then the spilled-over contributions into adjacent structures are determined by convolving the signal with the simulated point spread function (PSF) and removed by voxelwise subtraction [9], [10]. Additionally, the inhomogeneous coil sensitivity was corrected by dividing with a normalized sodium image of a homogeneous NaCl solution. Sodium signal-to-noise-ratios (SNR) were determined, where the noise was defined as the signal standard deviation in free space. Differences between patients and healthy controls were evaluated using a two-sided Mann-Whitney U test and results were considered significant if p < 0.05.

SNR values were successfully determined, with mean values of 15.3 ± 3.2 for patients with patellar tendinopathy and 9.9 ± 1.5 for healthy controls. The signal intensity was relatively evenly distributed along the tendon in healthy controls (Figure 1), whereas the patients distribution varied depending on the location of the pathology. Most patients showed signs of tendinopathy only in the proximal part of the tendon (Figure 2). However, some had structural differences along the entire tendon. In those cases, the sodium signal was also elevated throughout the entire tendon. The differences in SNR between patients and healthy controls were significant (Figure 3). The 1H T2* times were 5.4 ± 1.9 in patients and 2.8 ± 0.3 in controls, which was also significant (Figure 4).

Sodium SNR values were successfully determined in the patellar tendon and significant differences were found between patients and healthy controls. Previously, Marik et al. applied sodium MRI to the middle part of the patellar tendon in healthy controls and patients with type 1 diabetes [11]. They presented the sodium signal in the tendon normalized to a phantom intensity and found an increase in signal of about 25 % in patients, which is lower than in our case (55 %). However, the diabetic patients did not yet show signs of structural alterations in the tendon [11], which were present in our tendinopathy patients. Their results suggest that sodium MRI could be a useful tool for monitoring patients at risk for developing tendinopathy. Sodium SNR values were also determined in the Achilles tendon at 7T, with values of 4.9 ± 2.1 in healthy controls and 9.3 ± 2.3 in patients with Achilles tendinopathy [6]. Although the exact values are difficult to compare between different sites, the signal increase in patients is comparable to ours. The 1H T2* results are in line with literature values, where for example 1.8 ms were reported for healthy controls [12] and 6.43 ms for patellar tendinopathy patients [13].

Sodium SNR and 1H T2* values of the patellar tendon were successfully determined and significant differences were found between patients with patellar tendinopathy and healthy controls. The feasibility of sodium MRI could be validated with the established method of 1H T2*determination and has potential as a valuable tool for the early diagnosis of patellar tendinopathy in the future.
Rika MÖLLER (Düsseldorf, Germany) , Julia JURISIC , Lukas DREWES , Hans-Jörg WITTSACK , Lena Marie WILMS , Anna-Katharina JURIC , Anja MÜLLER-LUTZ , Armin NAGEL , Benedikt KAMP
14:15 - 15:00 #54653 - P355 Applications of Zero Echo Time (ZTE) MRI sequence (pseudo-CT) in musculoskeletal pathology.
P355 Applications of Zero Echo Time (ZTE) MRI sequence (pseudo-CT) in musculoskeletal pathology.

To evaluate the diagnostic utility of Zero Echo Time (ZTE) sequence in musculoskeletal magnetic resonance imaging (MRI). To capture the weak signal from structures with an ultra-short T2 relaxation time. To analyse the ability to generate pseudo-CT-like images without ionising radiation and to compare diagnostic performance and image quality with those of conventional sequences.

A retrospective study conducted using a 3-Tesla MRI scanner. The study included patients with suspected musculoskeletal conditions, for whom ZTE sequences and standard sequences (spin-echo and gradient-echo) were acquired in the same anatomical regions. The visualisation of the cortical bone, calcifications and ossified structures, as well as anatomical definition and the presence of artefacts, were analysed qualitatively. The assessment was carried out independently by a radiologist and an MRI-specialised technician. The ZTE sequence is acquired almost immediately after the RF pulse (TE~0) and has a 3D radial trajectory in K-space. It captures very weak signals from tissues with a low water content (bone). The sequence type is Ultrashort echo-time 3D isotropic. It has a TE of 0.02µsec, a 1º Flip angle, 50kHz Bandwith, and a 1mm isometric slice thickness. The acquisition time is relatively short, at around 3 minutes and 30 seconds.

The ZTE sequence demonstrated a significant improvement in the detection of signals from ultra-short T2 tissues, enabling better characterisation of cortical bone and calcified structures compared with conventional sequences. The images obtained demonstrated a high spatial resolution and an appearance similar to that of computed tomography, which facilitated musculoskeletal anatomical assessment without the need for irradiation. Among the limitations observed were susceptibility artefacts and a high degree of dependence on the adjustment of technical acquisition parameters.

The ZTE sequence is a promising tool in musculoskeletal imaging, as it enables the acquisition of pseudo-CT-like images with good anatomical correlation to conventional CT and without exposure to ionising radiation. Its incorporation into MRI protocols could reduce the need for additional X-ray or CT scans in certain clinical contexts, particularly in the assessment of cortical bone, calcifications and ossifications to improve diagnostic assessment in musculoskeletal pathology. Nevertheless, the technical parameters need to be optimised and further research is required into its limitations relating to artefacts and magnetic susceptibility.
Albert PARALS COMPAÑA (Girona, Spain) , Mara RODRIGO GIL , Sònia SALA LOPEZ , Joan Carles VILANOVA BUSQUETS , Joaquim BARCELO OBREGÓN , Iona PUJOL-SALA
14:15 - 15:00 #54261 - P356 Low-field knee MRI in the clinical setting: a comparative study of a 72 mT prototype and a clinical 3T scanner.
P356 Low-field knee MRI in the clinical setting: a comparative study of a 72 mT prototype and a clinical 3T scanner.

Low-field magnetic resonance imaging (LF-MRI) systems stand out for their portability and cost-effectiveness, albeit at the expense of reduced signal-to-noise ratio (SNR) and resolution, when compared to high-field systems. Despite growing interest in LF-MRI development, its diagnostic utility remains largely unexplored under 0.1 T. In this study, we present an investigation of the clinical potential of LF-MRI for musculoskeletal imaging of patients with suspected knee joint lesions. Following a full radiological review, this paired LF–HF database will serve to benchmark the performance of LF scanners as a Point of Care (PoC) medical diagnostic tool and contribute to the development of DL-based image enhancement methods for LF. 

Following ethics and regulatory approval, a cohort of 87 patients with suspected knee joint injuries underwent paired scans using a 72 mT portable scanner based on a Halbach array (Physio I, MRILab - i3M) [1] and a 3T Philips ACHIEVA (La Fe University and Polytechnic Hospital, Valencia, Spain). The LF protocol included four sequences: Sagittal T1W FSE, T2W FSE and STIR, and a coronal STIR [2] (see Figure 1). This protocol was adapted to resemble the established 3 T ACHIEVA knee protocol at La Fe Hospital and had a total scan duration of 40 minutes. To ensure patient comfort, positioning rails were installed to facilitate stretcher movement, and entertainment options (e.g. music, podcasts) were offered during scans. Post-processing includes noise reduction performed in the k-space using Microsoft’s SNRAware, a neural network trained on HF acquisitions [3]. Image distortions resulting from B₀ inhomogeneities were partially corrected using Single-Point Double-Shot (SPDS) for the B₀ mapping and conjugate phase for the reconstruction [4]. A 10th order ellipsoidal harmonic fitting of the ΔB₀ field was applied during reconstruction, which was performed using Tyger remote signal processing [5,6]. DICOM format was incorporated into the pipeline with standard clinical metadata to facilitate radiological review. A first cohort of 8 patient examinations was reviewed by radiologists at La Fe Hospital, to identify visible lesions according to standard criteria, and three were cross evaluated with the corresponding LF scans.  

To date, all patient acquisitions have been successfully acquired, and preliminary observations suggest that the LF-MRI images provide sufficient anatomical detail and contrast to visualize and identify certain knee joint lesions, such as Baker's cysts, bone fractures, joint effusions, and soft-tissue inflammation, although a complete formal radiological case-by-case analysis is currently under way. Figures 3-4 show the first cases reviewed by radiologists so far:   ⠀ Case 1: Complex tear of the lateral meniscus with displaced fragment and moderate joint effusion (Figure 3).   ⠀ Case 2: Advanced degenerative changes in the external femorotibial compartment with severe chondral damage and subchondral bone alterations (Figure 4).  

The most prevalent knee joint injuries - meniscus, and anterior cruciate ligament (ACL) lesions [7]- were identifiable in the low-field scans of the initial three patients. Arthritis, micro-bone fractures, and tissue degradation compared to tears, show up in finer grain detail in 3 T and might be more difficult to identify in our LF acquisitions. The SPDS correction yielded visible improvement of image distortions, particularly in the straightening of the femur (Figure 2).  ⠀  With regards to patient comfort, overall feedback was positive. However, longer acquisition times posed difficulties for older patients and for those who experienced significant discomfort during prolonged scanning. ⠀  This dataset will enable quantitative diagnostic evaluation of LF acquisitions for musculoskeletal lesion identification and will provide a tool for the development of DL-based super-resolution and denoising methods specific for LF with real clinical data. 

We have presented a comparative clinical study of LF and HF MRI for knee imaging in patients with joint lesions. Preliminary results demonstrate diagnostic concordance for selected pathologies while pointing to current technical limitations.  ⠀ SPDS-based B₀ distortion correction led to improvements but may have not yet reached its full potential. Pending avenues to explore include spherical harmonics for B₀ map fitting and elastix-based co-registration [8] between LF and HF images. A systematic review of all acquisitions, including a blind assessment of LF images, is yet to be performed. The resulting paired LF–HF dataset will enable rigorous validation and the development of DL-driven enhancement techniques, supporting broader clinical translation of LF-MRI for point-of-care and resource-limited settings. 
Eli G. CASTANON , Marina FERNÁNDEZ-GARCÍA (Valencia, Spain) , Teresa GUALLART NAVAL , Amadeo TEN ESTEVE , Sonia GINÉS-CÁRDENAS , Jose BORREGUERO , David CASTRO-VIDAL , Luiz GUILHERME C SANTOS , Jesús CONEJERO , Cristina FERRANDO-JUAN , Basilio MATEO-QUIÑONERO , Pilar MORCILLO-TOLEDO , Eduardo PALLÁS , Nerea SANTÁGUEDA-ALMANSILLA , Verónica SAPIÑA-RUIZ , Lucas SWISTUNOW , Nelida TORDERA-CORTELL , Lorena VEGA CID , José M ALGARÍN , Fernando GALVE , Luis MARTÍ-BONMATÍ , Joseba ALONSO
Palau Sira
15:00 TIME FOR A BREAK - Coffee and refreshments will be available at the cash bar.
15:30

"Friday 02 October"

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A24
15:30 - 17:00

FT2-5 - From Innovation to Implementation
MRI Research to Clinical Practice

FT Clinical
15:30 - 15:45 The Clinical Perspective: What do Radiologists Need from the MRI Research World? Rianne VAN DER HEIJDEN (Keynote Speaker, The Netherlands)
15:45 - 16:00 The Vendor’s Perspective: How to Bring New Methods into Products;. Michal POVAZAN (Clinical Scientist) (Keynote Speaker, Best, The Netherlands)
16:00 - 16:15 The Medical Physicist's Perspective: The Pathway to Implementing qMRI in Clinical Practice;. Alan STONE (Keynote Speaker, Ireland)
16:15 - 16:30 The Industry Perspective: MR in Drug Development. Didier LAURENT (Keynote Speaker, Switzerland)
16:30 - 17:00 Panel Discussion.
Sala Simfònica

"Friday 02 October"

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B24
15:30 - 17:00

OB2-1 Scientific session
Advances in Microstructural MRI

15:30 - 15:42 #54492 - PG026 Simulating how tissue microstructure affects multimodal MRI.
PG026 Simulating how tissue microstructure affects multimodal MRI.

MRI has many different contrast mechanisms that are sensitive to tissue microstructure, including diffusion-weighted MRI, susceptibility-weighted MRI, magnetisation transfer, and quantitative relaxometry. Many of these MRI modalities are sensitive to different aspects of the same microstructural components (e.g., myelin). Thus, combining information across modalities may provide a more comprehensive view of tissue microstructure. However, different modalities are usually analysed in isolation with each one coming with its own set of models and assumptions. Here we present a new Monte Carlo MR (MCMR) simulator[1] that aims to capture different ways in which tissue microstructure can affect the MRI signal evolution for a wide range of MRI sequences (Figure 1).

MCMR simulator was implemented in the Julia programming language[2]. It has both a Julia and command line interface, with comprehensive documentation and tutorials available for both. An overview of the simulator methodology is shown in Figure 2. Briefly, the user synthesises a tissue geometry (consisting of any combination of infinite walls, infinite cylinders, spheres, and arbitrary meshes), and defines one or more MR sequences for which the MR signal will be computed in parallel. These sequences can include finite or instantaneous radiofrequency (RF) pulses and gradients and can be flexibly defined by the user or directly read from pulseq files[3]. For each sequence the simulator predicts the MRI signal for a single voxel. The simulator uses a Monte Carlo approach, where for each simulated isochromat we consider (see “Tissue Properties” in Figure 1): 1. The isochromat random walk hindered by tissue membranes (which might be permeable). 2. Longitudinal (T1) and transverse (T2) relaxation times, which can vary in individual cells/compartments. 3. The tissue magnetic susceptibility affecting the local magnetic field strength. 4. Surface relaxation and/or magnetisation transfer at the tissue boundary. All of these features are supported for simplified geometries of cylinders or spheres as well as full meshes. Parameters controlling these effects can be set per cell type, per individual cell, or even for a patch of membrane within a cell.

Figure 3 illustrates the simulator result for a diffusion MRI sequence and a magnetisation transfer sequence in a substrate made of randomly distributed parallel cylinders. While analytical approximations such as the Gaussian phase approximation[4] for diffusion MRI and the spin-bath model[5] for MT give accurate results in certain regimes, they cannot capture all effects, such as the attenuation at high b-values (Figure 3A) or at long mixing times within the free water compartment (red line in Figure 3B).

By combining the effects of diffusion, permeability (exchange), magnetic susceptibility, and magnetisation transfer in the MCMR simulator, we allow for a more coherent analysis of how the tissue microstructure affects the MRI signal across different modalities. For example, the simulator could be used to: • Identify how the various simulated features affect the estimates of modalities where they are not usually considered, such as the effect of permeability and magnetisation transfer on diffusion MRI measurements[6]. • Optimise acquisition protocols for specific aspects of the tissue microstructure[7]. • Model fitting for MR modalities for which no accurate analytical approximations exist, such as MR fingerprinting[8,9]. • Investigate how tissue microstructural changes affect the MRI signal across multiple modalities (Figure 4). This could be used to help interpret changes seen in multi-modal MRI acquisitions.

By supporting arbitrary sequences and multiple signal formation mechanisms, the new MCMR simulator[10] enables MR signal prediction across multiple MR modalities and the development of new MR sequences.
Michiel COTTAAR (Oxford, United Kingdom) , Zhiyu ZHENG , Benjamin C. TENDLER , Karla MILLER , Saad JBABDI
15:42 - 15:54 #54547 - PG027 Impact of Magnetization Transfer on Diffusion Microstructure Estimates in Rodent Gray Matter.
PG027 Impact of Magnetization Transfer on Diffusion Microstructure Estimates in Rodent Gray Matter.

Diffusion MRI–based estimates of water exchange in gray matter are typically interpreted in terms of membrane permeability [1]. However, magnetization transfer (MT) effects, which occur on comparable time scales [2] may confound these estimates. The extent of this potential bias in gray matter remains unexplored. In this work, we introduce a controlled MT perturbation using a dedicated preparation module prior to the diffusion encoding [3], [4], [5] to probe the sensitivity of diffusion-derived microstructural estimates obtained from power-law analyses [6] and the NEXI biophysical model for gray matter [1] to MT effects in the rodent brain.

Data acquisition: Data were acquired on a 7T Bruker scanner equipped with 760 mT/m gradients. The sequence combined an MT preparation module with diffusion-weighting (2D-PGSE-EPI) (Figure 1A). An ex vivo mouse brain fixed in 4% paraformaldehyde and rinsed in PBS was immersed in hydrogen-free perfluoropolyether medium. Scans were performed at room temperature using a multi-shell (b), multi–diffusion-time (Δ) protocol (5 shells and 5 Δ values; 30 directions per shell; 8 b₀ images). Additionally, 8 reversed EPI phase-encode b₀ images were acquired for susceptibility distortion correction. The same protocol was run twice: without (MTOFF) and with (MTON) MT preparation. The MT module relied on sine-modulated pulses to cancel dipolar order effects [7]. Detailed acquisition parameters are provided in Figure 1B. Processing: For each MT condition, diffusion-weighted images were concatenated for denoising [8], Gibbs unringing [9], topup [10], [11] and eddy current correction [12]. High SNR images (b0 and b=1ms/µm²) were extracted and denoised separately to generate unbiased noise maps for Rician mean correction [13]. A brain mask was generated by intensity thresholding of the average b0 image. Rigid co-registration [14] between the two MT conditions was performed to compensate for B0 drift, prior to diffusion and kurtosis tensors [15] and NEXI maps [1] estimation. Quantifications: Four regions-of-interest (ROIs) were manually segmented on the average b0 map of MTOFF and then propagated to the MTON volumes, including: cortex (Ctx), hippocampus (Hip), thalamus (Tha) and striatum (CPu).

Figure 2A shows MT-induced signal variations across the brain in averaged b₀ and diffusion-weighted images of each shell (Δ=40ms). Figure 2B-K illustrates MD(Δ) and MK(Δ) curves, along with representative MD and MK maps (Δ=40ms) for MTON and MTOFF. Time dependence was observed in all ROIs for MD and MK, except for MD in the Hip (based on slopes of linear regression fits; not shown). The relative difference between MTON and MTOFF increased with Δ, peaking in the CPu (32% at Δ=40ms). In contrast, MD remained more stable across Δ, with a much smaller maximum variation between MT conditions in the CPu (5% at Δ=40ms). Structural disorder power-law analysis [6] of MK(Δ) is shown in Figure 3A-C for the Hip. The 2D–3D structural disorder model fit the MTOFF data best, whereas for MTON, all power-laws provided comparable fit quality. The Kärger model [16] with three free parameters provided a better overall fit to both MTON and MTOFF data but yielded opposite trends in exchange time (tex) compared to the two-parameter model (Figure 3D-E). Globally, all parameters estimated from the power-laws showed sensitivity to MT preparation across all investigated ROIs. The average value and standard deviation of NEXI parameters in each ROI for MTOFF and MTON are displayed in Figure 4. Under MTON, tex was consistently longer and the intra-neurite diffusivity (Di) shorter across all ROIs, while the cell-process fraction (f) and the extra-neurite diffusivity (De) exhibited varying trends.

Our results demonstrate that MT can systematically influence diffusion-derived microstructural estimates in gray matter when introduced through controlled perturbations. Consistent variations are observed in both power-law analyses and microstructural modeling using the NEXI framework. In particular, the presence of MT leads to increased apparent exchange times derived from NEXI, suggesting that diffusion-based estimates of exchange in gray matter may reflect a combination of membrane permeability and MT-driven signal modulation. Future work will focus on characterizing the impact of intrinsic MT effects on diffusion measurements and on disentangling these contributions through joint diffusion–MT modeling. Additionally, different MT preparation schemes [17] will be investigated to assess the potential of MT as a filtering mechanism of the diffusion signal, with the aim of improving compartmental specificity in biophysical modeling.

Our findings emphasize the impact of MT effects on diffusion MRI microstructural measurements and motivate further systematic investigations, including more comprehensive modeling and experimental validation, to better disentangle these contributions.
Andreea HERTANU (Marseille) , Lucas SOUSTELLE , Olivier M. GIRARD , Guillaume DUHAMEL
15:54 - 16:06 #54364 - PG028 Detection Transformer for Direction-Aware Diffusion-Diffusion Correlation Imaging.
PG028 Detection Transformer for Direction-Aware Diffusion-Diffusion Correlation Imaging.

MRI is the gold standard for many biomedical imaging tasks. However, microscopic structures that are relevant in many, i.e. neurodegenerative diseases cannot be resolved. Multidimensional correlation imaging is a promising tool for the quantification of cellular microstructure compartments [1-4] and shows promising results when combined with deep learning [5-7]. However, the assessment of directional information in white matter fiber tracts, especially crossing fibers, previously required additional scans or tensor-valued diffusion encoding and Monte-Carlo inversion [8-11]. Following up on our registered report from 2025, we propose to combine the information about fibers and other microstructure in 3D diffusion-diffusion correlation data [12]. We use object detection principles to avoid the reconstruction of full 3D spectra, but predict a list of compartmental diffusion metrics, i.e. MD, FA, and main direction, together with the weight of each compartment. This allows us to quantify tissue microstructure including fibers with standard multi-shell acquisitions.

We simulate a synthetic multi-compartment dataset. Starting from random tensor eigenvalues for each of nc=1−5 sub-compartments in a voxel, diffusion tensors are calculated. Compartmental signals are simulated following a 331-contrast multi-shell diffusion protocol ([13] up to b=2000s/mm²)[14] with 1% Gaussian noise. The weighted signal sum is paired with a list of each sub-compartment’s MD, FA, main direction, and signal fraction to form a paired dataset for supervised learning (see fig. 1) [12]. 250′000 samples are split into training, validation, and test data in a ratio of 80−10−10. A Detection Transformer (DETR) [15] is trained to predict sub-compartments using object detection principles. Instead of bounding boxes and class labels, we use adapted embeddings based on MD, FA, main direction, and signal fraction. The architecture formulates the task as a set prediction problem. The number of queries was set to n=10, representing possible possible sub-compartments. An existence score states how likely a sub-compartment is actually present in the voxel. As there is no particular order of compartments, Hungarian matching is used to pair predictions and targets such that loss is minimized [16]. Our custom loss function combines three elements: • Squared errors for each MD, FA, and signal fraction • Inverse cosine similarity for the direction • Binary cross entropy of the existence score [17]. The diffusion metrics losses are weighted with the compartment’s signal fraction.

Results for random voxels from our test data with 1-5 compartments are shown in Fig. 3. The dominating compartments of each voxel and generally compartments with high signal fraction are predicted quite reliably. Accuracy decreases with decreasing compartmental signal fraction. R² is 0.87 for MD, and 0.76 for FA. For the main direction we observe a median angular error of 15.6°.

The presented detection transformer turns out as a promising tool for the reconstruction of 3D diffusion-diffusion spectra from standard multi-shell acquisitions, while avoiding to solve an unstable Laplace transform. Predictions are very reliable for nc=1. For samples with multiple compartments, compartments with high signal fractions are mostly predicted correctly. With nc of 4-5, predictions of very small compartments become challenging, as they contribute little to the overall signal evolution. Our next steps include further post-processing of the results by merging clusters of very similar compartments and leveraging spatial context, and further work on our loss functions. As a step toward the transition to in vivo application, experiments with fewer contrasts and tests on in vivo data in comparison with other methods are planned.

We presented a Detection Transformer for direction-aware diffusion-diffusion correlation imaging that predicts compartmental MD, FA, main fiber direction, and signal fraction directly from standard multi-shell MRI signals. We interpret microstructure quantification as an object detection problem and bypass the need for a full 3D spectrum reconstruction. Results on synthetic data demonstrate reliable recovery of dominant compartments across voxel configurations with up to five sub-compartments and build a promising baseline for future development.
Sebastian ENDT (Ingolstadt, Germany) , Johannes R. SCHLUND , Marcus WIRTH , Marion I. MENZEL
16:06 - 16:18 #54540 - PG029 In vivo detection of extracellular microscopic tortuosity in the human corpus callosum using oscillating-gradient diffusion filters at 3T.
PG029 In vivo detection of extracellular microscopic tortuosity in the human corpus callosum using oscillating-gradient diffusion filters at 3T.

Diffusion MRI provides a non-invasive window into tissue microstructure, but relating the measured signal to specific microscopic diffusion dynamics and tissue properties remains a major challenge in clinical acquisitions [1-4]. Conventional diffusion measurements probe the long-time regime, in which microscopic information is averaged into macroscopic diffusivity. Oscillating-gradient approaches, such as OGSE and NOGSE (non-oscillating gradient spin echo), can probe shorter diffusion-time and diffusion-length scales [5-8]. In particular, NOGSE-like contrast (Fig. 1a-b), obtained by subtracting two OGSE diffusion encodings, selectively filters translational diffusion dynamics, highlighting diffusion-length scales linked to microstructure [8-11]. Previous studies in white-matter-like fiber phantoms showed that NOGSE-like contrast exhibits diffusion-time-dependent behavior that is inconsistent with free diffusion, or purely restricted diffusion, or conventional macroscopic tortuosity models. This suggests a microscopic tortuosity regime [10]. More recently, the feasibility of measuring this contrast in the human corpus callosum at 3T was demonstrated [11]. Here, we extend these observations through an in vivo study in healthy white matter and fiber phantoms acquired on the same clinical platform. We investigate whether diffusion-time evolution of filtered diffusion lengths reveals transition toward the macroscopic tortuosity regime (Fig. 1c).

Three healthy volunteers and white-matter-like fiber phantoms mimicking extra-axonal spaces with different packing densities [10] were scanned on a 3T clinical MRI system (MAGNETOM Prisma, Siemens Healthineers AG) using matched PGSE (pulse gradient spin echo) and OGSE research application diffusion protocols (Fig. 1a). OGSE acquisitions used two oscillating-gradient frequencies (cosine-modulated trapezoids) (Fig. 1b). Diffusion measurements were projected along longitudinal and transverse directions relative to local fiber orientation and averaged within Freesurfer-segmented corpus callosum (CC) regions. PGSE measurements were used to estimate the effective diffusion αD₀ where α is the macroscopic tortuosity coefficient and D₀ the free diffusion coefficient. For the human brains, we measured D₀=3.2.10⁻¹² m²/ms in lateral ventricles. For the free-water phantoms, we measured D₀=2.3.10⁻¹² m²/ms, consistent with its expected value at room temperature. NOGSE-like contrast was analyzed as a function of diffusion time and filtered diffusion length to characterize transitions between microscopic and macroscopic diffusion regimes (Fig. 1b-d).

Fiber phantoms showed a systematic dependence on diffusion time (Fig. 2). The contrast maximum shifted toward larger filtered diffusion lengths with increasing diffusion time, indicating expansion of the effective diffusion length over the measured temporal range. The contrast maximum was attenuated relative to free diffusion, consistent with restricted diffusion, particularly in transverse directions. The same qualitative behavior was observed in the human corpus callosum, supporting a dominant extra-axonal origin of the in vivo contrast. This behavior cannot be explained by free diffusion, purely restricted diffusion, or conventional macroscopic tortuosity models, which predict constant scaling without attenuation of the contrast maximum [10]. Instead, the results are consistent with a microscopic tortuosity regime, where transient restrictions evolve before reaching the macroscopic limit. Directional analyses further showed earlier transitions toward the macroscopic regime in transverse measurements and in anterior/posterior CC regions, associated with smaller microstructural dimensions (Fig. 3). PGSE-derived α values captured the long-time tortuosity regime, while NOGSE-like contrast remained sensitive to preceding microscopic diffusion dynamics (Fig. 4).

PGSE and NOGSE-like contrasts probe complementary diffusion regimes. PGSE measurements characterize the long-time macroscopic tortuosity limit, where microscopic information is averaged into an effective diffusion coefficient. In contrast, NOGSE-like contrast selectively probes transient diffusion dynamics before this homogenized regime is reached by filtering specific diffusion-length scales. Consistency between phantom and in vivo observations further supports an extra-axonal origin of the measured contrast.

We report in vivo evidence of a microscopic tortuosity regime in the human corpus callosum using NOGSE-like contrast at 3T. This supports oscillating-gradient diffusion filters as a clinically feasible approach to probe transient extra-axonal diffusion beyond the long-time regime of standard diffusion MRI, enabling microstructure-sensitive characterization of brain tissue. Future work will optimize the NOGSE protocol for clinically feasible scan times and validate these findings in additional brain regions and larger cohorts.
Ignacio LEMBO FERRARI (Trento, Italy) , Analia ZWICK , Martin KUFFER , Manuela MORETTO , Lisa NOVELLO , Stefano TAMBALO , Thorsten FEIWEIER , Jorge JOVICICH , Gonzalo A. ALVAREZ
16:18 - 16:30 #54597 - PG030 Towards diffusion-weighted microstructure characterization of lymph nodes using simulation-based dictionary matching.
PG030 Towards diffusion-weighted microstructure characterization of lymph nodes using simulation-based dictionary matching.

Lymph nodes are essential immune organs, often reached by metastases in cancer patients. Suspicious nodes often require invasive biopsy after conventional imaging for a definitive diagnosis [1]. Patient management could improve with more accurate imaging diagnosis [2,3]. In this work, we used diffusion-weighted magnetic resonance imaging (DWI) to assess the feasibility of non-invasive microstructure characterization of cervical lymph nodes in-vivo. We computed conventional diffusion metrics and investigated a simulation-based method to quantitatively estimate the mean cell radius and intracellular volume fraction (ICVF).

We performed in-vivo acquisitions on a 3T system (MAGNETOM Cima.X, Siemens Healthineers, Forchheim, Germany) using a 64-channel head/neck coil in one volunteer. Axial multi-shell DWI was obtained in the neck using a pulsed-gradient spin echo [4] research sequence with a single-shot echo-planar imaging readout with b-values 500, 1000, 2000 and 3000 s/mm² (30 directions per shell, δ/Δ=10/25 ms, 1.5 mm isotropic). DWI preprocessing included denoising and correction for Gibbs ringing, susceptibility, eddy-current, and motion distortions [5-7]. We manually segmented the nodes and used spherical mean signals for analysis. Our framework estimates the mean cell radius and intra-cellular volume fraction by matching in-vivo DWI signals to a dictionary of Monte-Carlo-simulated signals generated from packed-spheres substrates [8,9]. Estimates are derived from the weighted contribution of the 5 nearest dictionary signals. Simulations reproduced the DWI protocol and modeled intra- and extra-cellular compartments with exchange. The dictionary contained 121 atoms (11 radii × 11 ICVF) plus an independent test set of 36 atoms for evaluation (Figure 1). We first evaluated the matching accuracy of our method on the test set using the relative absolute error. We also included a reliability score reflecting match confidence, based on similarity and agreement between solutions. Low scores indicate ambiguous or poorly-represented signals in the dictionary, while high scores show stable estimates. Noise robustness was assessed by adding Rician noise to the dictionary at SNR of 400, 100, 25. We then applied our method to in-vivo cervical lymph-node DWI. We also computed apparent diffusion coefficient (ADC) at b = 1000 s/mm², fractional anisotropy (FA) and mean kurtosis (MK) for qualitative diffusion characterization.

Our matching method applied to the test set under noiseless conditions achieved a reliability score of 0.88 ± 0.13 and errors of 15 ± 14 % for radius and 5 ± 3 % for ICVF. When noise was added up to SNR = 25, errors remained similar (14 ± 14 % for radius and 6 ± 4 % for ICVF) and the reliability slightly decreased to 0.86 ± 0.13 (Figure 2). In-vivo DWI showed sufficient signal quality with 74% signal decay at b = 3000 s/mm² and identifiable nodes (Figure 3a-c). ADC, FA, and MK maps revealed qualitatively consistent intra- and inter-nodes patterns (Figure 3d-f) with values of ADC = 0.70 ± 0.12 x10-3 mm²/s, FA = 0.15 ± 0.07, MK=1.02 ± 0.38. A distinct internal structure in the largest node corresponded to locally increased ADC (Figure 3a,b,d). We applied the matching method voxel-wise to the biggest node to minimize partial volume effects in five consecutive slices (250 voxels). The reliability score was 0.78±0.16, with 44% of the voxels above 0.8 and 87% above 0.6. Eight voxels reached the maximum radius and five the maximum ICVF. The estimated radius was 4.72±1.27 μm (Figure 4a) and ICVF was 43.92±10.87 % (Figure 4b). The observed structure had reduced reliability scores, radius and ICVF (Figure 4c).

The dictionary matching remained stable across SNR levels, supporting its applicability to in-vivo cervical lymph node DWI. Radius estimation was consistently less accurate than ICVF, suggesting lower protocol sensitivity within the explored parameter range. In-vivo acquisitions maintained sufficient signal quality up to b=3000 s/mm² while preserving nodal anatomy. ADC, FA, and MK maps showed coherent diffusion patterns. In the largest node, our method achieved a relatively high reliability score (10% less than on synthetic test data), despite potential partial volume effects and in-vivo DWI complexity. Mean cell radius and ICVF estimations were within physiologically plausible ranges [10,11]. The radius estimate of 4.72 μm is larger than the typical value for naïve lymphocytes, 3 μm [12], potentially reflecting biological variability, inflammation, or model limitations.

The presented preliminary results support the feasibility of simulation-based DWI signal matching for in-vivo non-invasive cervical lymph node microstructure characterization. Our approach demonstrated noise robustness and moderate-to-high reliability scores in-vivo. Estimated parameters were physiologically plausible, but protocol optimization is needed for better parameter identifiability. These results motivate further validation on a larger cohort.
Salomé BAUP (Lausanne, Switzerland) , Ludovica ROMANIN , Juan Luis VILLARREAL HARO , Frederic GROUILLER , Thorsten FEIWEIER , Gian Franco PIREDDA , Dimitrios KARAMPINOS , Clarisse DROMAIN , Jonathan Rafael PATINO LOPEZ , Jean-Philippe THIRAN
16:30 - 16:42 #54339 - PG031 μNN: a physics-informed histology-MR neural network for microstructural diffusion imaging in cancer.
PG031 μNN: a physics-informed histology-MR neural network for microstructural diffusion imaging in cancer.

Diffusion MRI (dMRI) can serve as a non-invasive tool for accessing information about the tissue microstructure, but obtaining meaningful biological parameters remains an open problem. In place of concrete biophysical/phenomenological models, numerical approaches have been applied, using machine learning (ML) models such as random forests [1,2] and neural networks (NN) [3,4] to estimate the microstructural parameters. However, most cases have relied on simulated data as ground truth for ML training, with usage of co-registered histology-MR data limited [5]. Here, we introduce a microstructural NN (μNN) for solid tumor imaging, a NN trained on derived histological (hematoxylin-eosin) measurements co-registered to ex vivo dMRI of human liver, targeting parameters of direct relevance to cancer characterization.

Data acquisition:Ex vivo dMRI data were acquired from 10 liver cancer samples from 5 patients on a 7T Bruker BioSpec scanner using a PGSE protocol (Table 1). Data were denoised (MPPCA [6]) and Gibbs ringing mitigated [7], direction-averaged, and normalized to the mean b=0 image. Histological processing: Following MRI, samples were H&E-stained and digitized. Cells were segmented in QuPath [8] with cell population-specific detection parameters (hepatocytes, cancer cells, necrotic areas). Per-voxel maps of intracellular fraction (fin), mean and variance of cell size, and cellularity were generated and co-registered to MR space via ITK-SNAP. μNN training: A multilayer perceptron (MLP) was trained on paired dMRI signal and histology-derived parameter maps (~6500 voxels), targeting fin, mean and variance of cell size (denoted as mCS, varCS), and cellularity. Inputs consisted of direction-averaged normalized signals from the training data. A hyperparameter search over 2880 configurations was evaluated using leave-one-patient-out (LOPO) internal cross-validation, with model selection prioritizing cell size parameters. Performance was assessed via Pearson's correlation coefficient and bias index. The bias index was defined as BI = median(E), where E = 100×(measurement-reference)/reference. Results were compared against Histo-μSim [9,10], a simulation-informed inference framework also based on histology. External validation: The trained NN was applied to an ex vivo MMTV [11] mouse breast tumor data set acquired with a different PGSE protocol and freely available in Zenodo [12], which served for independent, external validation (see Table 1). At inference time, dMRI signals from the external validation set were harmonized to the reference acquisition space using a physics-informed RBF regressor interpolator, which was trained on the freely available Monte Carlo (MC) simulated signals distributed through Histo-μSim, enabling direct application of μNN without retraining.

The final MLP NN configuration consisted of three hidden layers (32, 16, 8), tanh activation, SGD solver, learning rate 0.0001, batch size 32, and L2 regularization α=0.05. LOPO validation showed strong correlation for fin (r=0.946) with moderate correlations for mean cell size, cellularity and cell size variance (r=0.584, 0.561, 0.406), and near-zero bias across all parameters (0.01% to -2.97%). Histo-μSim showed strong correlation for fin and cellularity but negative correlations for cell size parameters, with substantially higher bias (up to 108% for varCS). On the ex vivo mouse data (Figures 2 and 3), μNN generalized well across protocols and species, achieving strong statistically significant correlations for fin (r=0.922) and cellularity (r=0.821), and moderate correlation for mCS (r=0.649). Histo-μSim reached comparable correlations but again with consistently higher bias across all parameters.

μNN showed strong correlation with fin in both validations, with mCS and cellularity improving and reaching statistical significance in the external setting, indicating generalization beyond training tissue and species. Histo-μSim did not perform well on some samples containing coagulative necrosis which preserves cell structure and produces a confounding signal while μNN, trained on paired data including such tissue, handled these cases better. μNN also requires neither MC simulations nor manual segmentations, relying on QuPath-derived ground truth alone, substantially reducing processing time and complexity. Bias was consistently lower than Histo-μSim in both experiments, though it increased in the external validation set.

μNN is a promising, ready-to-run NN for microstructural imaging of solid tumors. Its performances match or exceed simulation-based inference in correlation while achieving substantially lower bias, without requiring simulations or manual segmentations. Generalization across protocols and species via simulation-informed harmonization demonstrates its potential as a practical tool for histology-guided microstructure mapping in cancer characterization. Further work is warranted to characterize its performance on in vivo human data.
Athanasios GRIGORIOU (Lausanne, Switzerland) , Carlos MACARRO , Teresa MOLINÉ , Maria Teresa SALCEDO ALLENDE , Javier HERNANDEZ LOSA , Santiago RAMON Y CAJAL AGUERAS , Elda FISCHI-GOMEZ , Roser SALA-LLONCH , Raquel PEREZ-LOPEZ , Francesco GRUSSU
16:42 - 16:54 #53688 - PG032 An open-source tool creating realistic digital twins of cells for diffusion MRI modeling.
PG032 An open-source tool creating realistic digital twins of cells for diffusion MRI modeling.

Diffusion MR imaging and spectroscopy (dMRI/S) probe tissue microstructure by sensing water molecules and metabolites, whose diffusion is restricted by cell membranes[1]. Monte Carlo simulations (MCS) in realistic numerical substrates are a powerful tool to characterize the dMRI/S signal’s sensitivity to complex cellular features. While previous studies have developed generators of brain cells, they were either not released as open-source[2], or limited to axons and astrocytes, as a realistic white matter substrate[3], [4]. We present OCTOPUS, an open-source C++ framework that generates digital twins of brain cells for MCS, with a focus on gray matter and with detailed morphological features such as tapering, undulation, beading, and spines (Fig. 1A).

Processes are represented as chains of overlapping spheres[3], [4], and are grown from a spherical soma or previously grown processes. Two types of cell growth are available: skeleton-based or generative growth (Fig. 1B). In skeleton-based growth, the branch structure, lengths, and angles are extracted from an input 3D cell reconstruction, while they are sampled from histology-informed morphological parameter distributions in generative growth. The remaining morphological features are sampled from input distributions for both types of growth. Tapering is the transition between soma and processes, modeled as an exponential decay in radius. Undulation and beading are modeled as Ornstein-Uhlenbeck models of the process direction and radius, respectively. To validate our beading and undulation model against theory, we first investigate the time dependence of diffusivity (D) and kurtosis (K). We grew 1.5mm long neurites (straight, undulated, or beaded), with a mean radius of 1μm. The undulation had a correlation length of 10μm, whereas the beading had a radius coefficient of variation (CV) of 0.3 with 5μm correlation length, mimicking histological data[5]. MCS parameters were: t=500ms, free water diffusion coefficient (Dfw)=2μm2 s-1, 1 million walkers. D and K were calculated from walkers’ trajectories, for diffusion times from 1-500ms, in steps of 1ms. We fitted the power-law describing 1-D short-range disorder (y=a+bt-0.5)[6] to D(t) and K(t), and calculated the variance explained r2. We report input morphological parameters and visually compare histological cell reconstructions (from Neuromorpho.org[7], [8]) to OCTOPUS-generated cells. We compare the intracellular dMRI signals between the two growth types using MCS of a PGSE sequence: δ=4.5ms, Δ=16ms, b=0-10ms μm-2, 128 isotropic directions, simulation time (t) of 21ms, Dfw=2μm2 s-1 (step size=0.2μm), 1 million walkers.

As expected, there was no D time-dependence and K=0 in the straight neurite (Fig. 2). In contrast, D decayed as t-0.5 in undulated and beaded neurites for t>100ms. K initially increased with time, before decreasing again following the same t-0.5 decay. These power law fits accounted for nearly all signal variance. We generated a wide variety of cell types using OCTOPUS (Fig. 4). The morphological input parameters are shown in Fig. 3. For all cells except pyramidal neurons, both skeleton-based and generative approaches created cells visually comparable to their histological reference. Anisotropic apical dendrites of pyramidal cells could not yet be replicated using generative growth and therefore required a skeleton-based growth for a more faithful reconstruction. This difference is reflected in the resulting diffusion signal at the chosen diffusion time.

dMRI simulations in OCTOPUS-generated cells reproduced physiologically plausible diffusion and kurtosis time dependencies. This suggests that the generated undulation and beading did not introduce spurious long range structural correlation, underscoring the biological plausibility of OCTOPUS. We demonstrated the ability of OCTOPUS to generate isotropic brain cells with controlled morphology, while further development is needed to generate polarized cells, such as pyramidal neurons. We will explore the geometric correspondence of cells generated using skeleton-based or generative growth on multiple length scales by comparing dMRI signals across a range of diffusion times. Since intracellular MCS is primarily applicable to dMRS, a key next step is to pack cells to a realistic density to obtain full gray matter substrates with adequate extracellular space for simulating dMRI signals.

Based on high-quality histological data, OCTOPUS allows the generation of a wide database of cells with control of intricate cellular features, thus enabling a systematic investigation of their impact on dMRI/S signals. Future work will focus on the signature of branching and spines on dMRI/S signals. Combined with frameworks that enable dense packing[9], we anticipate that OCTOPUS will contribute to generating realistic gray matter substrates, allowing a realistic, full representation of the intra- and extracellular space for dMRI.
Inès DE RIEDMATTEN , Malte BRAMMERLOH (Lausanne, Switzerland) , Juliette BEAUBIS , Jasmine NGUYEN-DUC , Ileana JELESCU
Sala de Cambra

"Friday 02 October"

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C24
15:30 - 17:00

ET2-1 - MRI in Women's Health

ET Clinical
15:30 - 15:52 The Gender Data Gap and the Importance of Studying Women. Goretti ESPAÑA IRLA (Speaker, Germany)
15:52 - 16:14 Breast MRI in Oncology. Edmund REITAN (Speaker, Norway)
16:14 - 16:36 Imaging the Female Athlete’s Heart: Differences, Disease and the Role of MRI. Kentaro YAMAGATA (Speaker, United Kingdom)
16:36 - 16:58 Maternal Brain MRI Changes during Pregnancy. Milou STRAATHOF (Postdoctoral Researcher) (Speaker, Amsterdam, The Netherlands)
Sala Petita

"Friday 02 October"

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D24
15:30 - 17:00

LTD2-3 Scientific session
Data-Driven MRI: Machine Learning and Automation

15:30 - 15:33 #54442 - PG178 ReSiDe-A: Attention-Enhanced and Memory-Efficient Self-Calibrated Denoisers for MRI Reconstruction without Fully Sampled Data.
PG178 ReSiDe-A: Attention-Enhanced and Memory-Efficient Self-Calibrated Denoisers for MRI Reconstruction without Fully Sampled Data.

Accelerated MRI reconstruction remains an important research challenge due to long acquisition times. Parallel MRI (pMRI), compressed sensing (CS), and deep learning (DL) methods have significantly improved reconstruction speed and quality [1-6]. However, most DL-based approaches require fully sampled datasets, which are often unavailable in clinical MRI [7]. This limitation has led to growing interest in self-supervised deep learning (SSDL) methods that learn directly from undersampled measurements [8-10]. Recent SSDL approaches include DIP, RAKI, SSDU, and ReSiDe [11-15]. While effective, scan-specific methods are computationally expensive, and the original ReSiDe [13] framework suffers from high memory usage due to iterative denoiser storage and reliance on DnCNN [16]. In this work, we propose ReSiDe-A, an improved self-supervised MRI reconstruction framework integrating an attention-guided U-Net denoiser and a memory-efficient storage strategy to enhance reconstruction quality and practical usability.

MRI reconstruction was formulated as a plug-and-play (PnP) inverse problem where a learned denoiser acts as an implicit image prior. The proposed ReSiDe-A introduces two key improvements over ReSiDe [13]. First, the DnCNN denoiser is replaced with an attention-guided U-Net (A-UNet), illustrated in Figure 1. The encoder–decoder structure with skip connections enables multi-scale feature learning, while attention gates suppress irrelevant structures and enhance anatomically important regions, improving structural fidelity under high undersampling [17]. The denoiser is trained using a self-supervised noisy-as-clean strategy by adding synthetic Gaussian noise to intermediate reconstructions. Second, a memory-efficient denoiser storage strategy is introduced, where denoisers are saved only after every five iterations instead of at each iteration, significantly reducing memory consumption with negligible performance loss. Two variants are proposed: ReSiDe-A-S (scan-specific), in which reconstruction and denoiser training are jointly performed after every fifth iteration for a single-patient dataset; and ReSiDe-A-M (multi-measurement), in which denoisers are pre-trained on datasets from multiple patients, and the denoiser models obtained after every fifth iteration are stored for later use in reconstructing data from any patient dataset. Experiments were conducted on T1- and T2-weighted fastMRI brain datasets [18] using two Cartesian undersampling masks, M1 and M2, with an acceleration factor of R=4 and 32 auto-calibration signal (ACS) lines. The proposed methods were compared with CS [2], PnP-BM3D [19], ConvDecoder [20], SSDU [14], ReSiDe-S, and ReSiDe-M [13].

ReSiDe-A-S and ReSiDe-A-M consistently suppress aliasing artifacts while improving the preservation of fine anatomical structures compared with competing methods. Representative reconstructions, corresponding zoomed-in regions, and error maps are presented in Figures 2 and 3. The first row shows the ground truth alongside the reconstructed results of each method, the second row highlights the corresponding zoomed regions for detailed visual comparison, and the third row illustrates the sampling masks and associated error maps. These results demonstrate superior edge preservation and reduced reconstruction distortion. Quantitative results in terms of PSNR and SSIM (summarized in Figure 4), averaged over five test images and reported as mean ± standard deviation, show that ReSiDe-A-M achieves the best performance across both sampling masks and modalities. The proposed methods consistently outperform CS, PnP-BM3D, ConvDecoder, SSDU, and other ReSiDe variants, demonstrating strong robustness across different undersampling patterns.

The performance gain of ReSiDe-A is mainly attributed to the attention-guided U-Net, which improves multi-scale feature representation and enables better focus on anatomically relevant structures. Compared to DnCNN in ReSiDe, the proposed architecture provides stronger contextual modeling and better structural preservation. Additionally, the proposed storage strategy reduces memory requirements without degrading reconstruction quality. ReSiDe-A-M further improves practicality by avoiding scan-specific retraining during inference, making it more suitable for real-world clinical deployment.

We propose ReSiDe-A-S and ReSiDe-A-M, enhanced self-supervised MRI reconstruction frameworks that combine attention-guided U-Net denoisers with a memory-efficient plug-and-play optimization strategy. Experiments on fastMRI datasets demonstrate that both variants consistently outperform CS, SSDU, ConvDecoder, and existing ReSiDe approaches in terms of qualitative and quantitative performance. In addition, the proposed frameworks significantly improve memory efficiency while maintaining strong computational practicality.
Muhammad SHAFIQUE , Moona TAHIR (Rawalakot, Pakistan) , Aneeqa SALEEM , Irfan JAMSHED , Muhammad Kashif ASLAM , Hammad OMER
15:33 - 15:36 #54187 - PG179 Zero-Shot Contrast-Agnostic Segmentation of the Optic Nerve and Globe Trained Exclusively on Constrained Synthetic MRI.
PG179 Zero-Shot Contrast-Agnostic Segmentation of the Optic Nerve and Globe Trained Exclusively on Constrained Synthetic MRI.

Accurate segmentation of the optic nerve (ON) from MRI is crucial for neuro-ophthalmological assessments and monitoring inflammatory and neurodegenerative diseases [1]. However, deep learning models typically suffer from severe domain shift when applied to unseen MRI contrasts (e.g., across varying clinical acquisitions) and require vast amounts of manually annotated data for each specific modality. To overcome data scarcity and advance robust contrast-agnostic analysis, we propose training a 3D segmentation architecture exclusively on synthetically generated data. We aimed to evaluate its zero-shot performance on both a multi-contrast synthetic validation set and real MRI images, benchmarking our approach against the established contrast-agnostic tool, SuperSynth [2,3]. To assess performance across distinct morphological scales, the evaluation focused on both a delicate structure (the ON) and a massive structure (the globe) to ensure a comprehensive assessment of the topological robustness of our proposed method.

A unified anatomical label map from a single reference subject (N=1) was utilized as the spatial template. Using a customized Lab2Im/SynthSeg pipeline [4], 1,000 synthetic training MRIs were generated from this subject. Crucially, to prevent unrealistic distortions of thin, linear structures like the ON, non-linear spatial deformations were heavily constrained (nonlin_std=0.5), preserving anatomical topology while randomizing intensities, bias fields, and resolutions. A 3D full-resolution nnU-Net was trained from scratch [5] solely on this synthetic dataset. For quantitative validation, 100 synthetic MRIs were generated from two unseen reference subjects. Intensity priors were constrained to simulate diverse multi-contrast environments. The proposed model, ORION (Optic Robust Invariant segmentatiON), and the SuperSynth were evaluated using a comprehensive suite of spatial and structural metrics: Dice Similarity Coefficient (DSC), Positive Predictive Value (PPV), True Positive Rate (TPR), Normalised DSC (nDSC), Normalized Surface Distance (NSD), Conformity Coefficient (CC), Intersection over Union (IoU), 95th percentile Hausdorff Distance (HD95), and Average Symmetric Surface Distance (ASSD). Additionally, a Bland-Altman analysis was performed to assess volumetric agreement.

The proposed zero-shot model (ORION) successfully segmented both structures across diverse synthetic contrasts. For the globe, both models performed adequately, with ORION achieving a mean DSC of 0.937 (volumetric bias: -609 mm³) compared to SuperSynth’s 0.914 (bias: -932 mm³). However, on the ON, performance diverged drastically. ORION maintained robust accuracy (DSC: 0.715, PPV: 0.793, TPR: 0.651) with a minimal volumetric bias of -359 mm³. Conversely, SuperSynth exhibited severe degradation on the ON, yielding a mean DSC of 0.283, driven by substantial anatomical under-segmentation (TPR: 0.180) and a severe volumetric underestimation bias (-1474 mm³) (Figure 1 and 2). Visual inspection demonstrated that ORION accurately delineates the ON without any target-domain retraining or modality-specific tuning (Figure 3).

Training solely on synthetically generated images with customized spatial priors allows a standard nnU-Net to generalize to diverse MRI contrasts. The quantitative results reveal a critical limitation of generalized contrast-agnostic models like SuperSynth: while they perform adequately on massive structures (globe), they struggle significantly to delineate delicate targets (ON). Constraining the non-linear deformations during generation was paramount to prevent the ON from breaking or distorting unrealistically during training. ORION learns robust topological priors independent of intensity profiles, vastly outperforming the baseline in preserving delicate anatomies.

Constrained synthetic data generation enables effective, zero-shot multi-contrast segmentation of both massive and delicate anatomical structures. By successfully preserving the topology of the ON, ORION drastically outperforms standard contrast-agnostic baselines and reduces reliance on expensive, modality-specific manual annotations, demonstrating strong potential for sequence-independent clinical deployment.
Carla XENA BOSCH (Barcelona, Spain) , Srikirti KODALI , Sara LLUFRIU , Ahmed T TOOSY , Eloy MARTINEZ-HERAS , Ferran PRADOS
15:36 - 15:39 #54472 - PG180 Benchmarking unsupervised anomaly detection in brain MRI: a systematic comparison across training regimes and preprocessing pipelines.
PG180 Benchmarking unsupervised anomaly detection in brain MRI: a systematic comparison across training regimes and preprocessing pipelines.

Unsupervised anomaly detection (UAD) in brain MRI learns from healthy data and flags lesions as deviations, avoiding pixel-level annotations [1]. Diffusion-based methods report substantial improvements over earlier approaches, yet inconsistent training corpora, contrasts, field strengths, and preprocessing make it difficult to judge whether these improvements reflect architecture or pipeline choices [2]. It remains unclear how much contrast matching, multi-site data pooling, and tissue-segmentation preprocessing matter relative to model design, and whether any current method can reliably detect small lesions. StRegA [3] introduced FSL FAST tissue-segmentation as preprocessing; here we apply it systematically to four non-StRegA architectures alongside ten matched training configurations on healthy data (IXI, MOOD), evaluated on BraTS.

We compare five UAD methods: StRegA [3], a compact context-encoding VAE with native FSL FAST preprocessing; SCRD4AD [4], scale-aware contrastive reverse distillation; MAD-AD [5], a masked diffusion model; cDDPM [6], guided conditional denoising-diffusion; and UCCD [7], unsupervised contrastive analysis on a conditional-diffusion backbone (Figure 1). Training data. Healthy-only training on IXI (3T/1.5T, T1/T2) and MOOD (T1) in ten matched configurations per method covering single-site, mixed-field-strength, and joint T1+T2 regimes. Evaluation on BraTS (T1, T2). Preprocessing. Each non-StRegA method was tested with and without StRegA’s FSL FAST tissue-segmented input, using three representative configurations. FAST is native to StRegA. Metrics. Following [2], we report Slice DICE, Volume DICE, and Slice AUROC stratified by tumour size (small/medium/large) with bootstrapped 95% CIs.

Contrast matching was the strongest single factor (Figure 2). T2-trained models on BraTS T2 outperformed T1 counterparts across all methods (mean Slice AUROC T1/T2: StRegA 0.73/0.84; cDDPM 0.81/0.85; UCCD 0.81/0.88). The two conditional-diffusion methods led overall: UCCD reached AUROC 0.883 and Large DICE 0.706 (IXI 1.5T → BraTS T2); cDDPM reached AUROC 0.865 and Large DICE 0.768 (IXI 3T+1.5T → BraTS T2), both well above StRegA, SCRD4AD, and MAD-AD under the same conditions. Multi-site data pooling did not uniformly help. cDDPM improved when combining IXI 3T+1.5T (Large DICE 0.768), but MAD-AD degraded with added heterogeneity (AUROC 0.794 → 0.728 → 0.668 on T1), and SCRD4AD dropped from 0.721 to 0.590. Conditional-diffusion methods tolerated diversity; the others did not. Applying StRegA’s FAST preprocessing to the four other architectures showed a clear architecture-dependent effect (Figure 3). For SCRD4AD, FAST produced the largest gain in the entire benchmark: Slice DICE rose from 0.348 to 0.754 and Small DICE from near-zero to 0.265 (IXI 3T+1.5T T2), the only configuration in which any method achieved non-trivial small-lesion detection. The diffusion-based methods did not benefit: cDDPM fell from 0.531 to 0.184; MAD-AD stayed at or below baseline; UCCD dropped to 0.000 on its strongest configuration. FAST sharpened SCRD4AD anomaly maps but diffusion methods lost discriminative signal once input was reduced to tissue-class maps. Size stratification (Figures 2, 4) confirmed the large > medium > small ordering, with small-tumour DICE near zero in all raw experiments [2]. FAST+SCRD4AD was the sole exception.

Contrast matching between training and evaluation data proved the strongest performance determinant, outweighing architecture in most configurations. Conditional-diffusion methods (cDDPM, UCCD) led consistently under matched conditions. Multi-site pooling improved conditional-diffusion but degraded reverse-distillation and masked-diffusion methods. StRegA’s FAST preprocessing, when transferred, exposed a clear interaction with model inductive bias: SCRD4AD benefited dramatically and achieved the only non-trivial small-lesion segmentation in the benchmark, whilst diffusion methods lost signal; FAST is thus informative as a probe of model behaviour, beyond its original role in StRegA. Small-lesion detection remains a near-universal failure in raw-input experiments. Validation is limited to BraTS; multi-site testing is under way.

Across 70+ configurations of five UAD families, upstream choices (contrast matching, training-set composition, preprocessing) shifted model rankings more than architecture. Conditional-diffusion methods gave the strongest raw performance, but the FAST-SCRD4AD interaction yielded the best small-lesion segmentation, an otherwise universal failure. These results argue for reporting UAD performance across a matrix of conditions rather than single-configuration comparisons.
Negin KAFEE HERNASHKI (Milan, Italy) , Soumick CHATTERJEE
15:39 - 15:42 #54678 - PG181 Fine-Tuning a Multimodal Large Language Model for Non-Invasive IDH Mutation Status Prediction in Glioma.
PG181 Fine-Tuning a Multimodal Large Language Model for Non-Invasive IDH Mutation Status Prediction in Glioma.

Isocitrate dehydrogenase (IDH) mutation status anchors the WHO CNS5 glioma classification and carries direct prognostic and therapeutic weight [1,4], particularly since the 2024 FDA approval of vorasidenib for IDH-mutant tumors following the INDIGO trial [5]. Since tissue sampling is constrained by tumor heterogeneity and surgical risk, noninvasive preoperative prediction of IDH status from MRI has become clinically valuable, and deep learning on multi-contrast anatomical MRI has reached internal accuracies of above 80% using deep learning architectures [6-8]. More recently, Vision-Language Models (VLMs) have started entering the neuro-oncological imaging field by jointly encoding MRI and clinical or radiology report text, enabling context-aware representations and zero- or few-shot reasoning, with clear potential for molecular-subtype prediction. This study investigates whether a parameter-efficient, fine-tuned VLM can directly predict IDH status from preoperative multi-parametric MRI.

Dataset: The UCSF Pre-operative Diffuse Glioma MRI dataset (UCSF-PDGM) [9], comprising 501 patients (299M/202F; age 56.9 ± 15.0 years, range 17–94) with WHO CNS grade 2–4 gliomas (grade 2: n=56, grade 3: n=43, grade 4: n=402) was used in this study. Thirteen oligodendrogliomas were excluded because their defining 1p/19q codeletion makes them a molecularly distinct IDH-mutant entity that would confound binary IDH classification, and 24 IDH-wildtype astrocytomas were excluded due to their prognostic heterogeneity under WHO CNS5 reclassification criteria. The final patient cohort consisted of 464 patients (374 IDH-wildtype (80.6%) and 90 IDH-mutant (19.4%)). The exclusion schema is shown in Figure 1(a). The details of the dataset subgroups are shown in Table 1. Image Preparation: The middle axial tumor slice was extracted from three co-registered NIfTI volumes (FLAIR, T1-contrast-enhanced, T2) and stacked as a pseudo-RGB image (R=FLAIR, G=T1C, B=T2) with 224×224 pixels. We used a soft filtering technique to attenuate the surrounding tissue, with the attenuation decreasing with distance. Sample images of IDH-mutant and IDH-wildtype patients are shown in Figure 1(b). Model Architecture: We fine-tuned Qwen3.5-4B, a 4-billion-parameter natively multimodal model integrating a Qwen3-VL vision encoder with a Gated DeltaNet/full-attention hybrid text decoder. Parameter-efficient training used QLoRA [10], 4-bit NF4 quantization with double quantization, and low-rank adapters (rank r=8, α=16, dropout=0.05) applied to all attention and FFN projection matrices (q/k/v/o/gate/up/down_proj). Training ran for 10 epochs with balanced device mapping, an effective batch size of 16, a learning rate of 2×10⁻⁴, and per-sample class-weighted cross-entropy (positive weight ≈ 6.2×) to address the 6:1 training-set imbalance.

Fine-tuning substantially improved IDH classification over zero-shot inference. On the held-out test set, the fine-tuned model achieved an accuracy of 0.847, a balanced accuracy of 0.846, and a macro-F1 of 0.846, compared with 0.542, 0.535, and 0.409, respectively, under zero-shot inference (Table 2). The zero-shot baseline was strongly biased toward the IDH-mutant class, predicting almost every case as IDH-mutant and yielding near-zero IDH-wildtype recall (0.069) despite perfect IDH-mutant recall (1.000). Fine-tuning corrected this imbalance, raising IDH-wildtype recall to 0.759 and IDH-wildtype F1 from 0.129 to 0.830 (+0.701), while retaining high IDH-mutant recall (0.933) and improving IDH-mutant F1 score to 0.862. Validation performance was consistent with the test set, indicating that the gains generalized rather than reflecting overfitting to the validation split.

Vision Language Models rival specialized deep learning pipelines for MRI-based IDH classification (AUC 0.85), with the key advantage of flexible multimodal inputs (clinical variables, reports) and structured outputs beyond a single label. External multi-site validation remains needed.

Parameter-efficient fine-tuning of the natively multimodal Qwen3.5-4B achieves an AUC of 0.85 and balanced accuracy of 0.85 on the held-out test set, with high recall for IDH-mutant tumors (0.93) and high precision for IDH-wildtype (0.92). These results demonstrate that prompt-guided VLMs operating on pseudo-RGB multi-parametric MRI composites can serve as accessible, GPU-constrained tools for molecular biomarker prediction without requiring bespoke vision architectures. A key practical advantage of this framework is that heterogeneous clinical data, such as demographics, KPS, prior therapies, additional molecular markers (MGMT, 1p/19q, TERT, ATRX), and even free-text radiology reports, can be appended directly to the prompt without architectural changes, enabling future extensions towards richer multimodal reasoning and the generation of structured radiology-style reports alongside the predicted label. This study has been supported by USA Department of Defense grant number HT94252310510
Abdullah BAS (Istanbul, Turkey) , Esin OZTURK-ISIK
15:42 - 15:45 #54387 - PG182 Machine Learning Prediction of Intracranial Atherosclerotic Stroke in Acute Anterior Circulation Ischemic Stroke Using Clinical and MRI Features.
PG182 Machine Learning Prediction of Intracranial Atherosclerotic Stroke in Acute Anterior Circulation Ischemic Stroke Using Clinical and MRI Features.

Intracranial atherosclerotic stenosis (ICAS) accounts for 10–30% of ischemic stroke worldwide, with higher prevalence in Asian populations [1,2]. Distinguishing ICAS from cardioembolic stroke is critical because optimal secondary prevention differs fundamentally: antiplatelet therapy and aggressive lipid management versus anticoagulation [3]. Existing classification (e.g., TOAST) requires extensive workup [4], and recently proposed ICAS scores are largely restricted to endovascular candidates. Machine learning (ML) approaches have shown promise, but their additive value over conventional logistic regression in tabular clinical datasets remains uncertain [5]. We aimed to compare five ML algorithms for predicting ICAS in acute anterior circulation ischemic stroke and to identify the dominant predictors using model-agnostic attribution methods.

We retrospectively analyzed 257 consecutive patients with acute anterior circulation ischemic stroke who underwent MRI including susceptibility-weighted imaging (SWI) and conventional cerebral angiography (ICAS, n=132; non-ICAS, n=125). Classification was by consensus of two experienced neuroradiologists using standardized angiographic criteria. Thirteen predictors were extracted: age, sex, hypertension, diabetes, dyslipidemia, smoking, atrial fibrillation (AF), prior coronary artery disease, admission glucose, NIHSS at emergency-department admission, NIHSS prior to angiography, DWI-ASPECTS, and the susceptibility vessel sign (SVS) on SWI [6] (Figure 1). Five classifiers were trained: logistic regression (LR) with L2 regularization, random forest (300 trees), XGBoost (200 rounds, depth 4), support vector machine (SVM) with radial-basis-function kernel, and k-nearest neighbors (k=5). Each model was evaluated by 5-fold stratified cross-validation. To address model-selection bias, three additional validation strategies were compared: train/validation/test split, nested cross-validation, and hold-out test with cross-validation on the training set. Feature importance was assessed using SHapley Additive exPlanations (SHAP) values, Gini importance, and standardized logistic regression coefficients [7]. The study was approved by the institutional review board with a waiver of informed consent.

ICAS patients were younger (median 64.5 vs 75.0 years, p<0.001), more frequently male (62.9% vs 46.4%, p=0.012), and more frequently smokers (32.6% vs 10.4%, p<0.001). AF was markedly less common in ICAS (10.6% vs 62.4%, p<0.001), and SVS positivity on SWI was rare in ICAS (12.1% vs 80.8%, p<0.001). All five ML models achieved high and similar discrimination on 5-fold cross-validation, with AUC ranging from 0.888 (k-NN) to 0.920 (LR). LR also led in sensitivity (0.864), specificity (0.840), and F1 score (0.860). Random forest and SVM tied for the second highest AUC (0.915), and XGBoost performed slightly lower (0.901), consistent with overfitting in modest tabular datasets (Figure 2). Feature attribution from logistic regression coefficients, random forest Gini importance, XGBoost gain, and SHAP analysis converged in identifying absence of SVS and absence of AF as the dominant predictors at both population and individual patient levels (Figure 3). Among validation strategies (Figure 4), nested cross-validation yielded an unbiased AUC of 0.914 ± 0.018 and selected LR as optimal in 3 of 5 outer folds. The train/validation/test split selected XGBoost based on validation AUC (0.932) despite its test AUC being the lowest (0.873), illustrating model-selection bias in small datasets.

Multiple ML algorithms achieved similar high discrimination for ICAS prediction, with LR performing best, challenging the assumption that complex algorithms are inherently superior in clinical tabular settings [5]. Equivalent performance across algorithm families likely reflects modest cohort size, near-linear relationships between the dominant binary predictors (SVS, AF) and ICAS, and effective a priori feature curation by domain knowledge. Validation-strategy choice materially affected which model appeared optimal, supporting nested cross-validation for studies of this size. Across all attribution methods, absence of SVS on SWI and absence of AF consistently emerged as the dominant predictors of ICAS, reinforcing the diagnostic role of these two routinely available variables. Limitations include the retrospective single-center design, modest sample size, and absence of external validation.

Five ML algorithms achieved high and comparable discrimination (AUC 0.888–0.920) for predicting intracranial atherosclerotic stroke in acute anterior circulation ischemic stroke, with logistic regression performing best. Absence of SVS on SWI and absence of AF consistently emerged as the dominant predictors across algorithms and attribution methods. External validation in independent cohorts is warranted before clinical implementation.
Ilwoo PARK (Gwangju, Republic of Korea) , Thanh Quang LE , Thong Ngoc Huy VO , Byung Hyun BAEK
15:45 - 15:48 #54461 - PG183 Automated classification of glioma treatment response: benchmarking via modality selection and coarse tumor detection.
PG183 Automated classification of glioma treatment response: benchmarking via modality selection and coarse tumor detection.

With a 5-year survival rate of 6.9% [1], glioblastomas are the most aggressive type of glioma. Surgery is usually the first step in treatment, followed by chemoradiotherapy. Afterwards, regular MRI scans are performed to track patients' treatment response. Using the Response Assessment in Neuro-Oncology (RANO) criteria [2], radiologists classify this response into one of four categories based on their analysis of multiple MRI scans. Due to the need to compare many imaging modalities obtained during successive follow-ups, this evaluation is very complex and time-consuming. Therefore, having a more efficient protocol by reducing the required modalities without compromising prognostic accuracy could lower expenses while also improving patient comfort. Moreover, it would help deal with missing modalities due to time limits or contrast contraindications.

Figure 1 presents the overall pipeline of this work. Experiments were conducted using the publicly available LUMIERE dataset [3], comprising 638 timepoints across 91 patients. A DenseNet264 architecture from the MONAI Python library [4] was trained to predict the four RANO categories using different combinations of the four available MRI modalities: T1, T2, FLAIR, and Contrast-enhanced T1 (CT1). Model generalization was assessed through 5-fold cross-validation with a stratified 80/20 train/test split. Performance was quantified using balanced accuracy (BA), F1-score, recall, and precision. Additionally, aiming to assess whether constraining the model's focus to the tumor region would improve classification, an automated tumor masking strategy was explored. A YOLOv11 detection model [5,6] fine-tuned on the BraTS2021 and BraTS2024 datasets was used to create a bounding box around the tumor. This model was externally tested in the UCSD-PTGBM dataset. Finally, Grad-CAM (Gradient-weighted Class Activation Mapping) [6] was applied to the top-performing model to identify the regions most influential to its predictions.

The tumor detection model yielded a good performance (recall: median>0.99, mean=0.96, std=0.13, 11 out of the 59 subjects were outliers). In Figure 2, the boxplot distributions of the performance metrics are presented for each fold. The highest performance was achieved when all modalities were used unmasked (CT1+T1+T2+FLAIR) reaching the maximum value of each metric (BA=62%, F1-Score=47%, precision=79%, recall=33%). Nevertheless, this result was not significantly different from the unmasked T1+T2+FLAIR and CT1+T2 combinations (Table 1), which presented higher median BA and recall and thus a higher robustness. Concerning the use of the masked images, all but the T1+T2+FLAIR combination achieved better results than their unmasked version, with improved median BA, F1-score, precision, and recall. Yet, the only significant difference was found in the recall when using the T1+T2+FLAIR combination. The explainability results of four examples for each class are presented in Figure 3. Using the masked version of the images as input allows the steering of the model’s activations towards the tumor region, as expected.

In this work, the use of different MRI modalities and an automated glioma detection model is studied. As expected, using all modalities available (CT1+T1+T2+FLAIR) yielded the highest peak performance; however, no statistically significant difference was observed relative to the T1+T2+FLAIR combination, which demonstrated greater cross-fold robustness while eliminating the need for contrast agent administration. Additionally, adding the T2 image seems to be of benefit, which is consistent with prior evidence linking T2 signal characteristics to molecular biomarkers associated with treatment response [8,9]. Masking the tumor region to force the model to only consider that region generally improved classification robustness across modality combinations (except in the T1+T2+FLAIR case). This detection is key but never perfect, as the used model, despite its good performance, had 11 outliers (recall below 0.972) of which 6 had recall<0.9 (in UCSD-PTGBM). The model was applied to the LUMIERE dataset (previously unseen) and, from a visual inspection, provided a good detection recall (Figure 3), which is supported by the improved classification performance using the masked images. Future work should study the importance of more advanced modalities such as diffusion and perfusion MRI, due to their prognostic potential [9,10]. By presenting the first fully automated RANO classification across all four response categories, our study constitutes a benchmark for future research in this field.

These findings highlight the challenges of RANO classification, which is likely influenced by the heterogeneity of factors that play a role in treatment response. Although the best performance is achieved with the complete MRI protocol, using a shorter protocol coupled with a detection model might improve robustness.
Ana MATOSO (Lisbon, Portugal) , Catarina PASSARINHO , Marta P. LOUREIRO , José Maria MOREIRA , Pedro VILELA , Patrícia FIGUEIREDO , Rita G. NUNES
15:48 - 15:51 #54462 - PG184 Multispectral 7 Tesla MRI as a Potential Predictor of Dopamine Transporter Deficiency in Parkinsons Disease.
PG184 Multispectral 7 Tesla MRI as a Potential Predictor of Dopamine Transporter Deficiency in Parkinsons Disease.

Parkinson's disease (PD) is characterized by progressive degeneration of dopaminergic neurons, resulting in reduced striatal dopamine transporter (DaT) availability. Molecular imaging techniques can detect this degeneration early but are limited by ionizing radiation and radiotracer requirements. This study investigates whether multispectral 7T MRI can approximate a normative DaT distribution and thereby provide a non-invasive proxy for dopaminergic integrity.

Multispectral 7T MRI data were acquired in healthy controls and PD patients. Each voxel was represented by a high-dimensional feature vector combining multiple MRI contrasts, including QTI, CEST, QSM, and structural imaging. A voxel-wise learning framework was employed in two stages: first, a contrastive encoder was trained to learn tissue-relevant representations under realistic intensity and feature augmentations; second, a supervised regressor predicted voxel-wise DaT values from a normative atlas. To mitigate bias from spatial location, subject identity, and 7T-specific field inhomogeneities, coordinate and subject information were explicitly suppressed using adversarial learning and polynomial detrending.

The model recovered biologically plausible striatal DaT patterns and reproduced the characteristic high-uptake distribution in the putamen and caudate. Predicted DaT values were significantly reduced in the putamen in PD patients compared to healthy controls, while effects in the caudate were weaker and did not reach significance, consistent with known patterns of dopaminergic degeneration. Diagnostic performance based on putaminal predictions showed moderate discriminative ability.

The proposed framework demonstrates that multispectral 7T MRI contains information associated with the known spatial organization of dopaminergic terminals in the striatum. Predicted reductions were strongest in the putamen, consistent with the characteristic pattern of dopaminergic degeneration in PD. Explicit suppression of coordinate and subject information was essential to reduce shortcut learning and mitigate spatial confounds arising from anatomical structure and 7T field inhomogeneities. These findings should be interpreted as proof-of-concept rather than direct molecular imaging replacement, since the model was trained using a normative DaT atlas rather than paired subject-specific PET/SPECT data. The limited cohort size and moderate diagnostic performance further restrict clinical interpretation. Nevertheless, the results suggest that high-dimensional multispectral MRI may provide a non-invasive surrogate marker of molecular imaging, motivating future validation in larger cohorts with paired MRI–PET imaging.

These findings provide proof-of-concept that high-dimensional multispectral 7T MRI contains information related to dopaminergic terminal organization. Explicit bias suppression is critical for preventing shortcut learning in voxel-wise models, particularly in data-limited high-field settings. The proposed framework may enable non-invasive approximation of molecular imaging signals, but validation with larger cohorts and paired MRI–PET data is required.
Mert ÖZER (Erlangen, Germany) , Bernhard EGGER , Angelika MENNECKE , Armin NAGEL , Moritz ZAISS , Frederik LAUN , Arnd DÖRFLER , Jürgen WINKLER , Alexander GERMAN
15:51 - 15:54 #54477 - PG185 Feasibility of Tumor-Masked Structural Connectomics and Explainable Machine Learning for Assessing White Matter Disruption in Gliomas: A Pilot Study.
PG185 Feasibility of Tumor-Masked Structural Connectomics and Explainable Machine Learning for Assessing White Matter Disruption in Gliomas: A Pilot Study.

Gliomas are the most common and aggressive primary tumors of the Central Nervous System, with infiltrative growth that disrupts structural brain architecture beyond what conventional Magnetic Resonance Imaging (MRI) captures, as tumor infiltration frequently extends past visible T2-FLAIR abnormalities into white matter (WM) pathways [1-5]. Diffusion Tensor Imaging (DTI) enables non-invasive microstructural assessment of occult infiltration, though traditional voxel-wise analyses remain limited by registration artifacts [6-10]. Structural connectomics offers patient-specific characterization of brain network topology and fiber integrity [11-14]. Conventional Machine Learning (ML) approaches applied to connectomic data often lack clinical interpretability [15,16]. This pilot study proposes an explainable ML framework using personalized tumor-masked structural connectivity networks to classify Low-Grade Gliomas (LGG) vs. High-Grade Gliomas (HGG), identify tract-specific WM disruption, and support presurgical planning [17].

Preoperative T1-weighted MRI and DTI data (25 directions, b = 1000 s/mm²) from 35 glioma patients (20 LGG, 15 HGG) were retrospectively analyzed. Preprocessing included motion and eddy current correction using Gaussian Process outlier replacement [18,19]. Personalized tumor masks were manually segmented [20], and overlapping regions from the Johns Hopkins University (JHU) ICBM-DTI-81 atlas were excluded to reduce confounding effects of direct tumor invasion [21,22]. Preserved regions were used as network nodes for individualized structural connectome construction using probabilistic diffusion modeling and tractography [23,24]. We extracted 307 connectomic descriptors, including raw matrix metrics, global graph measures, and regional topological features such as node strength and clustering coefficients across 50 WM tracts [25,26]. Feature selection combined ANOVA F-test and Sequential Feature Selection (SFS) with an optimized Random Forest (RF) classifier to address high-dimensional multicollinearity [27-29]. Model performance was validated using Repeated Nested 5-Fold Stratified Cross-Validation [30,31], while SHAP analysis was used to improve interpretability and identify tract-specific WM disruptions [32,33]. Post-hoc data leakage and hierarchical clustering analysis were performed.

The cohort showed a median age of 43 years with no significant demographic differences between groups, though glioma grade was significantly associated with hemispheric lateralization, with LGG predominating in the left hemisphere and HGG in the right (p = 0.038) (Table 1). Personalized tumor-masked connectograms revealed asymmetric, localized WM degradation in remote pathways, confirming that network topology alterations are driven by peritumoral infiltration rather than uniform global disruption (Figure 1). Hierarchical clustering identified three highly collinear feature modules from the 307-variable space (Figure 2), and sequential feature selection converged on an optimal 3-feature subset at peak cross-validated accuracy of 96.00 ± 8.00% (Figure 3a): node strength of the right retrolenticular internal capsule, clustering coefficient of the right fornix/stria terminalis, and clustering coefficient of the middle cerebellar peduncle (Figure 3b). Nested cross-validation was mathematically validated by a post-hoc leakage analysis, which revealed that non-nested validation overestimated model performance by an F1-score of 0.1144. SHAP analysis confirmed stable, interpretable alignment between WM integrity metrics led by the right fornix/stria terminalis and the model's grade predictions (Figure 4).

The findings demonstrate that glioma-induced structural degradation does not spread uniformly across the global WM architecture [34]. The selection of microstructural tract alterations in localized WM regions, specifically the right internal capsule, fornix, and middle cerebellar peduncle, as the critical topological drivers underscores the localized impact of peritumoral infiltrative zones [35]. These WM pathways are associated with structural connectivity, limbic integration, and cerebello-cortical communication. Their involvement suggests that HGG produces widespread network disruption beyond the tumor site itself. The findings support the use of connectomic graph metrics as potential non-invasive biomarkers for distinguishing LGG vs. HGG [36].

This pilot study demonstrates the feasibility of an explainable ML framework using tumor-masked structural connectomics for glioma grading. A compact three-feature signature achieved high classification performance while preserving model stability and interpretability. The approach translated complex network alterations into localized insights of white matter vulnerability, supporting its potential utility for presurgical planning, neuroanatomical assessment, and personalized monitoring in neuro-oncology.
Montalba CRISTIAN (Santiago, Chile) , Ignacio ESPINOZA , M Daniela CORNEJO , Carlos BENNETT , Steren CHABERT , Rodrigo SALAS , Pamela FRANCO
15:54 - 15:57 #54526 - PG186 A Continuous Learning Strategy for Automated Glioblastoma Segmentation: Knowledge Transfer between Pre-Operative and Post-Operative MRI Data.
PG186 A Continuous Learning Strategy for Automated Glioblastoma Segmentation: Knowledge Transfer between Pre-Operative and Post-Operative MRI Data.

Accurate segmentation of glioma subregions is crucial for precise therapy planning and follow-up.[1] Although manual delineation by experts remains the reference standard, automated methods can significantly improve efficiency, reproducibility, and scalability. Deep Learning approaches have achieved strong performance in pre-operative segmentation, particularly in distinguishing the necrotic tumor core, contrast-enhanced tumor (ET), and peritumoral edema.[2] Prior to the BraTS 2024 challenge [3], most studies focused on pre-operative images, with little emphasis on post-operative imaging, which is essential in follow-up clinical decisions.[3,4] Post-operative segmentation is inherently more challenging due to treatment-related changes caused by surgery and radiotherapy, leading to lower inter-rater agreement [5] and highlighting the need for robust automated solutions. A major limitation is the scarcity of public annotated post-treatment glioma datasets. Transfer learning (TL) strategies offer a promising solution. In this work, we investigate TL, unregularized and regularized using Elastic Weight Consolidation (EWC) [6], to combine knowledge from both pre- and post-operative datasets into a single tumor segmentation model.

We used two datasets: BraTS2021 [7] (N=1251, pre-operative) and BraTS2024 [8] (N=1350, post-operative). Both include T1, T2, FLAIR, and contrast-enhanced T1 (T1CE) MRI scans of glioma patients and expert labels for three nested subregions: ET, tumor core (TC), and whole tumor (WT), including edema. The resection cavity label from BraTS2024 was excluded for consistency. We used a Swin UNEt TRansfomers (Swin UNETR) architecture, combining a U-shaped decoder with a Swin transformer encoder.[9] This model was initially trained separately on each dataset (models 1 and 2, respectively). Subsequently, the BraTS2021-trained model was fine-tuned on BraTS2024 using: 1.1) no regularization and 1.2) EWC to mitigate “catastrophic forgetting” [10] and improve generalization (Figure 1). For EWC, we computed the Fisher Information Matrix after pre-training, identified the top 20% most important parameters, and applied a regularization strength of λ=1x10^2 to penalize deviations from those weights. Both TL approaches were optimized using a combined Dice+Cross-Entropy loss to address class imbalance, as post-operative TC and ET are more irregular.[11-13] Performance was assessed using Dice Similarity Coefficients (DSC), providing insights into model performance across pre- and post-operative contexts and fine-tuning approaches. The top 20% most important parameters of both single-domain models were compared to assess domain-driven shifts in feature importance.

Figure 2 and Table 1 summarize our results. Models trained on a single domain showed limited generalizability – the BraTS2021-trained model performance drops dramatically when tested on BraTS2024 (WT:0.806→0.560, TC:0.713→0.312, ET:0.735→0.338); effects of the BraTS2024-trained model tested on BraTS2021 are more subtle, mainly worsening performance in comparison with the BraTS2021-trained model on TC (0.713→0.648) and ET (0.735→0.701). Unregularized TL improved post-operative segmentation, while EWC only improved performance for WT (trained on BraTS2024→unregularized→EWC - WT:0.688→0.755→0.695, TC:0.436→0.480→0.400, ET:0.455→0.496→0.421). The top 20% most important parameters are largely shared across domains (Figure 3), with decoder-related parameters being more relevant to post-operative segmentation and thus being allowed to adapt freely to BraTS2024 (e.g. decoder2.conv_block). When tested on BraTS2024, EWC underperformed unregularized TL across all regions. However, EWC improved WT retention on BraTS2021, demonstrating that regularization successfully mitigated catastrophic forgetting.

Our results reveal that BraTS2024 contains features that are more transferable across pre- and post-operative domains than BraTS2021. TC and ET scores severely drop for every model tested on BraTS2024, as expected since these regions are the most affected by surgical resection. WT is more stable due to its spatial dominance. The overall improvement with TL suggests that features learned from pre-operative data remain valuable for post-operative analysis, namely regarding the edema region. Regularization had an adverse effect on adaptation to the post-operative TC and ET regions.

TL boosted post-operative performance without causing catastrophic forgetting of pre-operative knowledge. EWC regularization on the most important parameters for the pre-operative domain preserved or improved performance within pre-operative testing while still adapting to the post-operative domain, although with lower DSC. The improvement in pre-operative WT when including BraTS2024 highlights the complementary value of post-operative data. Future work should further explore EWC regularization for balancing adaptation with catastrophic forgetting across tumor regions and segmentation domains.
Catarina PASSARINHO (Lisbon, Portugal) , Ana MATOSO , Marta P. LOUREIRO , Patrícia FIGUEIREDO , Rita G. NUNES
15:57 - 16:00 #54065 - PG187 IDENTIFYING COGNITIVE SUBTYPES IN MULTIPLE SCLEROSIS USING SUBTYPE AND STAGE INFERENCE.
PG187 IDENTIFYING COGNITIVE SUBTYPES IN MULTIPLE SCLEROSIS USING SUBTYPE AND STAGE INFERENCE.

Cognitive impairment is highly prevalent in MS, yet its phenotypic heterogeneity remains incompletely understood [1]. Aims of this study were to identify distinct cognitive subtypes in MS by applying the Subtype and Stage Inference (SuStaIn) algorithm [2], and to examine their structural MRI correlates.

A total of 705 MS patients and 548 healthy controls were included. MS patients completed neurological and neuropsychological examinations. All subjects underwent 3T brain MRI to quantify T2-hyperintense white matter lesion volume, global and regional normalized brain volumes, and white matter microstructural metrics derived from diffusion tensor imaging. The SuStaIn algorithm was applied to neuropsychological scores to identify distinct cognitive subtypes. Least Absolute Shrinkage and Selection Operator (LASSO) regression was used to identify the most informative MRI features associated with these cognitive impairment subtypes. The selected features were then used to train a multivariable model to discriminate between cognitive subtypes, and its performance was assessed using the area under the receiver operating characteristic curve (AUC). An independent cohort of 369 MS patients was included for validation of SuStaIn results.

Four cognitive subtypes emerged: preserved cognition (n=252, 36%), executive-attention impairment (n=249, 35%), verbal memory impairment (n=177, 25%), and visuospatial memory impairment (n=27, 4%). Compared with the preserved cognition subtype, the other cognitive subtypes were older, had lower education, a longer disease duration, a higher prevalence of progressive MS, and more severe physical disability (p≤0.049). The verbal memory deficit subtype had a higher proportion of males than the executive-attention deficit subtype (p=0.027). LASSO regression identified 16 structural MRI variables, including normalized brain and cerebellar volumes, and mean diffusivity of the superior longitudinal fasciculus, middle cerebellar peduncle, and fornix (Figure 1). The multivariable model, based on the selected MRI features, showed moderate ability to discriminate executive-attention and verbal memory deficit subtypes (AUC≈0.70–0.71) and strong discriminative performance for the visuospatial memory deficit subtype (AUC=0.83), with an overall AUC of 0.75. The SuStaIn results were replicated in the independent validation cohort.

These findings support the presence of distinct and reproducible cognitive subtypes in MS, reflecting underlying heterogeneity in disease expression. The association between specific cognitive profiles and structural MRI patterns suggests partially divergent neuroanatomical substrates, particularly involving fronto-parietal and limbic pathways. Although the discriminative performance of MRI features was overall moderate, the stronger accuracy for the visuospatial subtype highlights potential subtype-specific biomarkers. These results may have implications for more personalized monitoring and targeted interventions in MS-related cognitive impairment.

This data-driven approach identified reproducible cognitive subtypes in MS, each associated with distinct structural MRI abnormalities.
Loredana STORELLI (Milan, Italy) , Damiano MISTRI , Paolo PREZIOSA , Elisabetta PAGANI , Federica ESPOSITO , Massimo FILIPPI , Mara ROCCA
16:00 - 16:03 #54327 - PG188 Automatic segmentation of globus pallidus internus in paediatric dystonia from conventional MRI.
PG188 Automatic segmentation of globus pallidus internus in paediatric dystonia from conventional MRI.

Accurate segmentation of the globus pallidus internus (GPi) is critical for deep brain stimulation (DBS) planning in paediatric dystonia, as target identification strongly influences clinical outcomes[1]. However, GPi delineation in children remains challenging due to the limited contrast of conventional MRI[2], high anatomical variability, and the presence of lesions affecting the basal ganglia structures[3]. Atlas-based approaches are commonly used but often fail to capture patient-specific anatomy[1]. Recently, deep learning methods have shown strong performance in medical image segmentation tasks[4], although their application to GPi segmentation in paediatric populations remains limited. This study aims to develop and evaluate a pipeline for automatic GPi segmentation from conventional MRI in paediatric dystonia. Specifically, it compares atlas-based and deep learning approaches, assesses the impact of multimodal MRI inputs, and evaluates their suitability for heterogeneous MRI data.

A retrospective cohort of 36 paediatric dystonia patients (aged 6–20 years) was analysed. Ground-truth GPi masks were manually delineated using fused T1-weighted and susceptibility-weighted imaging (SWI) to improve anatomical boundary definition. Two segmentation strategies were evaluated: (1) atlas-based registration using adult (MA_ICBM) and paediatric (P_ATAG) atlases; and (2) a deep learning approach based on nnU-Net, trained using different input configurations (T1 and T1+SWI). Performance was assessed using quantitative metrics, including Dice score and 95th percentile Hausdorff distance (HD95), complemented by qualitative visual assessment to evaluate anatomical plausibility, spatial alignment, and robustness in challenging cases.

Atlas-based methods achieved moderate performance (mean Dice ≈ 0.5, mean HD95 ≈ 4.2 mm). Visual assessment indicated that paediatric atlases provided better anatomical adaptation than adult templates, although results remained highly variable, particularly in patients with lesions or marked asymmetry. Frequent GPi overestimation and spatial misalignment -especially along the cranio-caudal axis- were also observed. The nnU-Net approach outperformed both single-atlas configurations in terms of overlap metrics, particularly when using multimodal input (T1+SWI), reaching Dice scores of up to 0.71 ± 0.08. This configuration yielded significantly higher Dice values compared to the MA_ICBM atlas (0.555 ± 0.116, p < 0.001) and the P_ATAG atlas (0.51 ± 0.11, p = 0.002). Surface distance metrics were also lower, with an HD95 of 2.65 ± 0.96 mm, although this improvement did not reach statistical significance. isual inspection further supported these findings, showing improved anatomical conformity and shape preservation over atlas-based methods (see Fig. 1). However, performance decreased in cases with pronounced structural abnormalities. Relative to the nnU-Net model with T1-only input (Dice = 0.58 ± 0.10; HD95 = 3.21 ± 1.53 mm), the multimodal model achieved an approximate 13% gain in overlap performance, and a slight decrease in surface metrics.

Atlas-based segmentation provides a simple and interpretable baseline but remains limited by inter-subject variability and its dependence on template anatomy, particularly in paediatric populations. In contrast, deep learning approaches such as nnU-Net better capture patient-specific anatomical variability and demonstrate improved segmentation accuracy, consistent with previous studies in subcortical structures[1]. The integration of SWI with T1-weighted MRI significantly enhances segmentation performance by improving contrast within the basal ganglia. However, the model still struggles with atypical anatomies, highlighting the need for larger and more diverse training datasets, particularly including patients with lesions.

Automatic GPi segmentation from conventional MRI in paediatric dystonia is feasible, with deep learning approaches outperforming atlas-based methods. Multimodal MRI inputs (T1+SWI) provide the best performance and improve anatomical accuracy. Future work should focus on expanding dataset size, increasing representation of pathological cases, and refining training strategies to enhance robustness and clinical applicability in DBS planning.
Mahmood-Ayesha LAIBA , Villa-María ANA (Barcelona, Spain) , Manel ALBERICH , Marcé-Grau ANNA , Rovira ÀLEX , Vázquez ÉLIDA , Delgado IGNACIO , Piella GEMMA , Pérez-Dueñas BELÉN , Deborah PARETO
16:03 - 16:06 #54393 - PG189 Cost-efficient batch prompting for converting free-text lumbar spine MRI reports into structured labels using large language models.
PG189 Cost-efficient batch prompting for converting free-text lumbar spine MRI reports into structured labels using large language models.

Lumbar spine degeneration is a leading cause of disability and reduced quality of life worldwide [1], and magnetic resonance imaging (MRI) plays a central role in its diagnosis and follow-up. Reporting lumbar spine MRI studies is, however, a repetitive and time-consuming task because multiple anatomical structures and pathological findings must be consistently assessed. Generating an automated reporting draft could reduce reporting burden and allow radiologists to focus on higher-value clinical tasks. Several artificial-intelligence (AI) strategies have been proposed for this purpose, but both model training and downstream validation require reliable ground-truth labels, typically obtained from structured reports. In clinical practice, however, most historical radiology reports remain in free-text format [2]. Large language models (LLMs) have recently shown promising performance for post hoc transformation of free-text radiology reports into structured outputs [2-4]. We propose and implement a scalable LLM-based methodology for converting free-text lumbar spine MRI reports into structured labels while guaranteeing context isolation and minimising computational and economic costs associated with repetitive prompt fragments.

A pipeline was designed to generate structured lumbar spine reports from free-text reports. Three aspects were considered critical: (1) the definition of an unambiguous structured template, (2) an inference strategy optimised for cost, and (3) guaranteeing complete isolation between reports. The structured template consisted of three parts: (1) instructions describing the organisation of the output structure; (2) a JSON output example; and (3) a comprehensive list of imaging findings, including possible classification labels, definitions, and anatomical locations when applicable. To maximise efficiency, token consumption was minimised by caching the common prompt prefix. By restoring the LLM state from this shared prefix, each report could be processed in complete isolation, preventing cross-sample interference, in accordance with current LLM deployment recommendations [4]. The pipeline consisted of four steps (Figure 1): 1. Construction of the prompt by concatenating the invariant template with the free-text report. 2. Grouping prompts into batches. 3. Submission of each batch to the LLM server, enabling reuse of common prompt prefixes via token caching. 4. Retrieval of structured JSON outputs. To quantify resource savings, an experiment was performed using 300 free-text lumbar spine MRI reports. Token usage, cache utilisation and economic cost were analysed as a function of batch size.

The proposed pipeline successfully generated structured JSON outputs for all 300 reports (Figure 2). Figure 3 shows the mean number of input tokens (distinguishing cached and non-cached), output tokens, and cache hit ratio for different batch sizes. For small batches, caching benefits remained limited. However, from batch size 6 onwards, benefits remained stable. The invariant input task consists of 4509 tokens, and free-text reports average 524 tokens, leading to a maximum cache hit ratio of 89.6%. Experimentally, ~80% of input tokens were retrieved from cache for clinically practical batch sizes. Using the GPT-5.1 pricing model as a reference, the mean processing cost per report was $0.0087 with batching and cache reuse. Costs increase to $0.0107 without cache and up to $0.0215 without batching. In our case, this corresponds to cost reductions of 19% versus non-cached inference and 60% versus single-request non-cached inference.

Prompt engineering was critical to eliminate ambiguity and ensure consistent structured outputs. Prompt ordering also proved essential: placing the invariant template first enabled prefix recognition and cached tokens. A key finding is that prompt-prefix caching changes the traditional cost constraints of LLM prompting. Once a sufficient batch size is reached, detailed instructions, richer examples, and more exhaustive classification rules can be added with only marginal additional cost. Rather than minimising prompt length, developers can prioritise prompt completeness and robustness. The economic analysis presented here reflects a commercial API and therefore a conservative worst-case scenario. In local LLM deployments, tighter state restoration could achieve the theoretical maximum cache hit ratio, further reducing the cost.

Batch- and cache-based prompt engineering enables cost-efficient conversion of free-text lumbar spine MRI reports into structured JSON labels using LLMs while preserving complete contextual isolation between studies. By reusing up to 80% of input tokens, the proposed approach substantially reduces inference cost while enabling large, instruction-rich prompts at negligible marginal cost. Because the present analysis reflects a commercial API, even greater efficiency gains are expected in local LLM deployments, supporting scalable ground-truth generation for radiology AI.
Pau XIBERTA I ARMENGOL , Adrià JULIÀ I JUANOLA (Girona (Catalonia), Spain) , Marc RUIZ ALTISENT , Víctor PINEDA SÁNCHEZ , Imma BOADA OLIVERAS
16:06 - 16:09 #54228 - PG190 Towards MRI-Only Clinical Workflows Using Hybrid Dense Transformer-Based GAN for MRI to CT Synthesis.
PG190 Towards MRI-Only Clinical Workflows Using Hybrid Dense Transformer-Based GAN for MRI to CT Synthesis.

To facilitate MRI-only clinical workflows and reduce unnecessary patient exposure to ionizing radiation associated with CT imaging, there is an increasing demand for accurate MRI to CT translation. In context of image-to-image translation the most important deep learning framework in literature is Pix2Pix [1], that leverages the supervised conditional GAN framework to learn the mapping from one visual representation into another using paired training data. Recent studies have strengthened the potential of deep learning techniques for MRI to CT synthesis. For instance, a unified deep learning framework has been presented in literature for synthetic CT generation from MRI and Cone-beam Computed Tomography (CBCT) based on a 2.5D U-Net++ architecture with a ResNet-34 encoder [2] using the SynthRAD2025 dataset [3]. In another comprehensive study [4], ten supervised and unsupervised GAN models across different anatomical regions are systematically compared for MRI to CT translation using the SynthRAD2025 dataset. In this study, we propose a hybrid dense transformer-based GAN architecture for MRI to CT synthesis using only a limited number of randomly selected paired MRI and CT images. In our experiments, we used human head images from the publicly available SynthRAD2025 Grand Challenge training dataset.

In this study, we designed a specialized generative adversarial network (GAN) that employs a hybrid DenseNet [5] and transformer [6] based generator for MRI to CT image synthesis as shown in Figure 1. The encoder comprising four dense blocks, each containing four dense layers, is employed to enhance feature reuse and strengthen gradient propagation. The DenseNet feature propagation mechanism is described in Eq. 1. Where xl represents the output feature map of the lth dense layer, and [x0,x1,...,xl-1] denote concatenation of feature maps from all the preceding layers. Hl(.)represents the composite transformation function consisting of convolution and ReLU activation. The transformer block in Figure 1 utilizes the multi-head self-attention mechanism described in Eq. 2 to capture long range contextual dependencies. Where Q, K, and V denote the query, key, and value matrices generated from the input feature embeddings. The term QK^T computes similarity scores between the feature tokens, while the scaling 'sqrt(dk)' stabilizes training for high dimensional embeddings. The softmax operation converts these similarity scores into normalized attention weights. The weighted value matrix V produces refined contextual feature representations. After the transformer processing, progressive upsampling stages using bilinear interpolation and dense decoder refinement blocks are incorporated to enhance feature propagation and reduce patch-like artifacts. Finally, a reconstruction head composed of successive convolutional layers with ReLU activation generates the synthesized CT image. The overall generator loss Ltotal is defined in Eq. 3. Where Ltotal is a combination of: (i) adversarial loss (Ladv) to synthesize realistic CT images, (ii) L1 loss (L1) to enforce pixel-wise intensity fidelity, (iii) gradient consistency loss (Lgrad) to preserve edge information and (iv) structural similarity loss (LSSIM) to enhance structural and perceptual consistency to achieve accurate and realistic MRI to CT translation. Where λ1, λ2 and λ3 are the hyperparameters, chosen empirically for optimum performance. The discriminator in Figure 1 is implemented as a PatchGAN [1] classifier operating on paired MR and CT images. The training was done using NVIDIA GeForce RTX 4070 GPU for 200 epochs using RMSprop optimizer and a learning rate of 0.00001.

The proposed model performance was evaluated using PSNR, SSIM and LPIPS metrics, in comparison with the baseline Pix2Pix [1] model as shown in Table 1. The Qualitative comparisons between Pix2Pix and the proposed method are illustrated in Figure 2, demonstrating improved structural fidelity and visual reconstruction quality achieved by the proposed approach.

In this study we explored the potential of hybrid transformer-based GAN architecture for MRI to CT synthesis with a limited dataset. The results show that proposed model effectively learns the complex mapping between MRI and CT images using a relatively smaller dataset, thus providing a synthetic CT generation mechanism suitable for MRI-only clinical workflows.

The proposed GAN with a special hybrid dense transformer-based generator provides an effective solution for synthesizing MR images into CT images. The results clearly indicate that the proposed architecture can achieve optimum performance in reconstructing perceptually consistent CT images. This highlights the potential of transformer-based architectures for advancing accurate and high-quality cross-modality medical image synthesis.
Muhammad Adnan NASIM (Islamabad, Pakistan) , Hammad OMER
16:09 - 16:12 #54535 - PG191 A Comparison of Automated Myocardial Segmentation Methods for Iron Overload Assessment in Dark-Blood T2* CMR.
PG191 A Comparison of Automated Myocardial Segmentation Methods for Iron Overload Assessment in Dark-Blood T2* CMR.

Cardiac Magnetic Resonance (CMR) T2* mapping is the gold-standard non-invasive technique for monitoring myocardial iron overload [1-3], where reduced T2* values reflect iron accumulation and an increased risk of cardiac dysfunction [4]. However, clinical T2* assessment still relies on manual myocardium segmentation, limiting both efficiency and reproducibility. This study compares convolutional neural networks (CNN)-based methods [5] for automatic myocardial segmentation in multi-echo gradient echo (MEGRE) dark-blood MR images and evaluates their clinical utility in detecting myocardial iron-overload.

Three parallel short-axis slices of the left ventricle (basal, mid-ventricular and distal) were acquired with MEGRE sequences at 1.5 T using a Siemens Avanto Scanner. Two segmentation tasks (Fig.1) were performed: global (whole myocardium) and segmental segmentation according to the American Heart Association (AHA) 16-segment model [6]. The dataset included 127 MRI volumes (50 healthy, 77 with iron-related pathologies) split into a training (N=50, 40%), and a test (N=77, 60%) sets. Three CNN segmentation frameworks were employed: nnU-Net 3D [7], U-mamba_bot 3D [8] (trained end-to-end), and TotalSegmentator [9] (pre-trained on task total_mr and fine-tuned) in a five-fold cross validation procedure. Only the first echo volume was used in training and inference. For segmental segmentation, a CNN-based landmark detection framework [10] was also explored to identify the interventricular septal junctions. The detected landmarks were used to drive the subdivision of the globally segmented myocardium (from TotalSegmentator) into AHA segments. The Dice Similarity Coefficient (DSC) and the 95th percentile Hausdorff Distance (HD95) were used to compare the predicted segmentations with ground-truth delineations manually performed by an expert radiologist. For each subject, a mono-exponential model [11,12] was fitted across echo times to estimate T2* at the voxel level, and the resulting maps were averaged within each segment to obtain mean T2* values and generate the corresponding Bull’s Eye [6]. Within each segment, a correction factor, derived from T2* estimated in a reference healthy population and normalized to the mid-ventricular septum [12,13], was applied to obtain the final T2* values. Subjects were classified as pathological if at least one segment showed a T2* value below 20 ms [14], and as healthy otherwise (Fig.1).

Evaluation on the test set demonstrated satisfactory agreement between manual and automated segmentations across all frameworks and both tasks (Table 1 and Fig.2). TotalSegmentator achieved the highest performance in both global (DSC=0.837±0.071) and segmental segmentation (DSC=0.757±0.113) with consistently superior results across basal, mid-ventricular, and distal slices. Comparable performances were achieved by nnU-Net and U-Mamba_bot. The Landmark Detection Tool showed lower results because inaccurate landmark localization occasionally prevented the correct subdivision of the myocardium into AHA-compliant segments. For iron overload classification (Fig.3), TotalSegmentator-based segmentations yielded the highest sensitivity (0.950) and the highest accuracy (0.961) in distinguishing healthy subjects from those with iron overload.

Automated segmentations showed good overall agreement with manual annotations and TotalSegmentator achieved the highest performance in both global and segmental tasks. Its strong performance, despite the limited training dataset, highlights the benefit of transfer learning through pretraining which enables more robust feature representations and improved segmentation accuracy. Global myocardium segmentation outperformed segmental subdivision, as accurate identification of the interventricular septal junctions remains challenging. The distal slice showed lower performance due to greater susceptibility artifacts and partial volume effect [15]. In segmental analysis, the mid-inferoseptal segment (seg 9) showed the highest accuracy, which is consistent with its lower susceptibility to field inhomogeneity and motion artifacts [12]. In clinical context, segmental T2* values derived from automated segmentations were highly consistent with manual measurements, confirming the reliability of the evaluated frameworks, particularly TotalSegmentator, for quantitative assessment of myocardial iron overload. Most misclassifications occurred in borderline cases with T2* values near the diagnostic threshold, suggesting that segmentation errors are unlikely to drive misclassification in clear-cut clinical cases.

This study shows that automated myocardial segmentation in CMR T2* imaging can achieve a clinically relevant accuracy for iron overload detection. Among the tested frameworks, fine-tuned TotalSegmentator achieved the best performance, supporting the use of a fast and fully automated pipeline to improve efficiency and reduce operator variability in clinical cardiac iron assessment.
Ambra CHECCHETTO (Padova, Italy) , Amalia LUPI , Giada BUSINARO , Simone PERRA , Alessandro GIUPPONI , Valentina VISANI , Alessia PEPE , Marco CASTELLARO
16:12 - 16:15 #54225 - PG192 Can AI safely reduce prostate biopsies? Real-world performance of a CAD system for clinically significant cancer detection on MRI.
PG192 Can AI safely reduce prostate biopsies? Real-world performance of a CAD system for clinically significant cancer detection on MRI.

Artificial intelligence (AI) tools for prostate MRI have demonstrated high sensitivity for detecting clinically significant prostate cancer (csPCa) [1-3], but real-world validation is needed to determine their impact on biopsy decision-making. This study aimed to evaluate the diagnostic performance and clinical impact of a commercially available AI-based computer-aided detection (CAD) system in a challenging cohort.

In this retrospective single-center study, 113 men with clinical suspicion of csPCa undergoing 3T MRI- in-bore targeted robotic biopsy were included. A single MRI-visible index lesion (PI-RADS ≥3) per patient was analyzed, consistent with routine clinical practice. MRI datasets were analyzed using a commercially available AI-CAD system. Lesion-level diagnostic performance was assessed for csPCa (Gleason score ≥7) and overall prostate cancer (Gleason ≥6) using two positivity thresholds (Moderate + High suspicion vs High suspicion only). Subgroup analyses were performed according to prostate zone and PI-RADS category. Additional analyses evaluated the potential reduction in unnecessary biopsies.

Mean age was 70.1 ± 7.9 years; csPCa prevalence was 58.4%, and 15.9% of lesions were PI-RADS 3. For csPCa detection, sensitivity/specificity were 0.92/0.32 (Moderate + High threshold) and 0.79/0.42 (High-only), respectively, with higher performance in the peripheral zone (PZ). For overall prostate cancer, values were 0.90/0.43 and 0.61/0.80, respectively. In PI-RADS 3 lesions, sensitivity was 0.33 across thresholds, while specificity improved from 0.60 (Moderate + High) to 0.67 (High-only). AI-CAD-guided strategies enabled substantial biopsy reduction, with up to 43% avoided (High-only) and 32% (Moderate + High), corresponding to ~1.4 and 3 avoided biopsies per missed csPCa, respectively. In PI-RADS 3 lesions, this trade-off was more favorable, reaching up to 4–5 avoided biopsies per missed csPCa.

In a challenging clinical setting (PI-RADS ≥3), AI-based CAD maintains high sensitivity for csPCa detection, while enabling biopsy reduction without compromising oncologic safety. Despite reduced sensitivity in PI-RADS 3 lesions, this subgroup exhibits the most favorable biopsy reduction–to–missed csPCa trade-off.

AI-CAD may enhance radiological decision-making by improving diagnostic confidence and standardizing MRI interpretation. Its integration into clinical workflows could reduce unnecessary biopsies and associated morbidity, supporting more personalized prostate cancer care, particularly in PI-RADS 3 lesions.
Joan C. VILANOVA (Girona, Spain) , Rubén MARTÍNEZ-GRANADOS , David BAZAGA , Encarna BERNABÉ SÁNCHEZ , Fuster-Matanzo ALMUDENA , Claudia LLINARES-MONLLOR , Andrea LORENZO POLO , Ana JIMENEZ PASTOR
16:15 - 17:00 Visit posters PG178-PG192.
Sala d’Assaig

"Friday 02 October"

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ET1-4- Building and Failing Together: Trials & Errors

ET Research
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"Friday 02 October"

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Poster 8
FT8 Sequence Development

15:30 - 16:15 #54489 - P357 DecSeq: declarative sequence programming using non-linear optimisation.
P357 DecSeq: declarative sequence programming using non-linear optimisation.

Defining MRI sequences requires setting the values for the timings and other properties of all the RF pulses, gradients, and ADC events within the sequence. Most sequence programming frameworks (i.e., all major vendors as well as open-source solutions like pulseq[1] or pypulseq[2]) rely on a procedural programming framework to set these parameters. In essence, it consists of a function, which takes as input target summary metrics from the user (e.g., echo time) and produces as output the exact timings and other parameters for all of the sequence components (left in Figure 1). This approach typically requires a large number of if-statements to resolve any edge cases. As an alternative, we propose that sequence programming can also be thought of as a constrained optimisation problem. In such an approach, the timings and other parameters of the sequence components are considered free variables. The sequence properties, scanner hardware limits, SAR limitations, etc. can be modelled as constraints on these variables. We then use a constrained, non-linear optimiser to estimate the sequence component parameters (right in Figure 1).

We present DecSeq as a prototype for the proposed sequence programming framework. Decseq is implemented in python. It can export to pypulseq[2], which allows for plotting and exporting the sequence to the Pulseq file format[1], which allows the output sequences to be run on MRI scanners across multiple vendors. Figure 2 illustrates how to define a new sequence in DecSeq. The sequence is defined by the order in which the sequence components will be played out. At this stage we do not set any of the component timings or other parameters. Instead, we define any number of constraints or summary metrics as equations. This sequence definition is a hierarchical process. Each of the sequence components used in step 2 in Figure 2 is already defined at an earlier stage with its own constraints and summary measures. For example, the excitation pulse would have a constraint that the total integral of the slice-select gradient between the excitation pulse itself and the end of the block should be zero. These sequence components can be reused across many different sequences. The sequence defined in Figure 2 in turn, could be embedded within a larger block that repeats this sequence for different slices or gradient orientations. When the user provides values for the summary metrics, these will be added as additional constraints. Optionally, the user can also provide a target for the optimiser (e.g., maximise the b-value). Otherwise, the default target of minimising the sequence duration is used. As far as possible, the constraints are solved symbolically using sympy[3]. Where that is not possible, the cost function and all of the constraints are passed on as analytic equations to the IPOPT library[4], which is a non-linear optimiser allowing for non-linear constraints. We find that IPOPT can produce optimal sequences even under a large number of constraints (as long as there is a valid solution). We interface with IPOPT through pyomo[5].

Figure 3 illustrates how the user would interact with the diffusion-weighted spin echo sequence defined in Figure 2. Even though the developer only provided a few forward equations for the echo time, b-value, diffusion time, and gradient duration, the user has a lot of flexibility. They can set the b-value (implicitly minimising sequence duration; Figure 3A), maximise the b-value given an echo time (Figure 3B), minimise the diffusion time (Figure 3C) or fix the gradient duration (Figure 3D). In traditional sequence programming each of these examples would require their own piece of code determining how the gradients should be placed given a particular set of user constraints.

DecSeq provides a new paradigm for sequence programming, where the exact parameters of details like the placing of diffusion-weighted gradients or the optimal gradient profile during an EPI readout (Figure 3) are left to a non-linear optimiser. This gives flexibility to the user, who can arbitrarily add any constraints or cost function targets and have the resulting sequence adapt. This comes at the price of using a non-linear optimiser, which means that the result is not fully deterministic, like in traditional sequence programming.

By defining an MRI sequence as a set of analytical equations, we can estimate the timings and properties of the MRI sequence components using a constrained optimisation.
Michiel COTTAAR (Oxford, United Kingdom) , Zhiyu ZHENG , Karla MILLER , Saad JBABDI
15:30 - 16:15 #54637 - P358 MR Autoresearch: Autonomous Agents Iteratively Discover Improved MRI Acquisition and Reconstruction Strategies.
P358 MR Autoresearch: Autonomous Agents Iteratively Discover Improved MRI Acquisition and Reconstruction Strategies.

MRI method development follows a slow manual cycle of hypothesis, implementation, experiment, and iteration that scales poorly across the combinatorial space of acquisition and reconstruction choices. Inspired by Karpathy's autoresearch concept [1], we propose MR autoresearch: autonomous AI agents that iteratively generate, execute, evaluate, and refine entire MRI pipelines, building on each other's successes and failures. Unlike conventional optimizers searching a fixed parameter space, these agents dynamically restructure the sequence, introduce new reconstruction modules, or invoke specialized optimizers - searching over programs rather than parameters.

The framework (Fig. 1) treats MR research as a closed loop. Each agent is equipped with MR-physics context, PyPulseq code generation, automated execution, physics-based validation, and Bloch simulation via MR-zero [2]. Agents share a task definition, evaluation metric, access to prior submissions, and a ranked leaderboard. We tested MR autoresearch on a FLAIR spin-echo EPI challenge (96×96, scan time <10 s). Performance was evaluated with the MAE between the reconstructed image and an ideal signal-equation target. Simulation included inhomogeneous B0, B1⁺, T2' and diffusion. We ran 25 experiments per model across three Gemini generations (2.5 Flash, 3.0 Flash, 3.1 Pro), each with leaderboard access to all prior scripts. A human MR physicist designed a competing solution under identical constraints. Total API cost are €75 for 75 experiments.

Over 28 experiments (Gemini 3.0), agents reduced baseline MAE from ~0.266 to ~0.167, roughly a 37% improvement (Fig. 2). Discovered strategies included (i) reduced readout bandwidth to shorten echo spacing, (ii) multi-shot segmented acquisition, (iii) differentiable optimization (MR-zero) of TI, TE, flip angles, (iv) and adaptive reconstruction with per-shot scaling and phase correction. The winner combined two-shot EPI sequence, MR-zero-optimized timing, and NUFFT reconstruction. Performance scaled with model generation (Fig. 3). Best MAE goes from 0.239 (Gemini 2.5) to 0.167 (Gemini 3.0), to finally 0.159 (Gemini 3.1). Gemini 3.1 uniquely discovered B0-field correction via polynomial unwarping. The human expert achieved MAE was 0.167 with a multi-spin-echo EPI sequence (ETL 7, 5 segments), matching Gemini 3.0 but surpassed by Gemini 3.1.

MR autoresearch demonstrates that autonomous discovery loops can accelerate MRI method development. The leaderboard-with-memory acts as selection: weak ideas are pruned, strong components propagate, and hybrid solutions emerge - resembling a compressed research community at machine timescales. Running MR autoresearch on a real scanner is feasible and currently being performed in our lab, with the goal of presenting scanner-validated results at the conference. Agents generate Pulseq sequences, transmit them to the scanner, acquire data, and reconstruct images in the same autonomous loop. All results here are simulation-based; some runs performed worse than baseline, confirming that exploration needs selection pressure.

MR autoresearch points toward a paradigm where protocol innovation is driven by the clarity of the clinical question rather than specialist availability.
Moritz ZAISS (Erlangen, Germany) , Amr ALY , Jonathan ENDRES , Tobias DORNSTETTER , Simon WEINMÜLLER , Arnd DOERFLER , Andreas MAIER
15:30 - 16:15 #54687 - P359 Any-Field Scanner: A Virtual MRI Scanner for Rapid and Realistic Pulseq Sequence Validation in the Browser.
P359 Any-Field Scanner: A Virtual MRI Scanner for Rapid and Realistic Pulseq Sequence Validation in the Browser.

Pulse sequence development has become considerably simpler, faster and more flexible with the open-source framework Pulseq [1], which provides a hardware-independent, vendor-agnostic description of MRI sequences. Pulseq has become a standard for sequence definition. To validate a newly designed sequence requires direct scanner access and measurement time. An alternative is the use of an MR simulation [2,3], which mimics the signal generation of an MR scan. This reduces costs and accelerates iteration cycles for sequence development, and allows for deeper insight with ground truth tissue properties available. We present the Any-Field Scanner, a flexible, virtual MRI scanner that integrates FOV positioning, pulse sequence design, MRI simulation, and image reconstruction in a single browser tab without further installation. A Pulseq sequence together with a standardized phantom definition [4] leads to reproducible simulation results that can be shared via link.

The Any-Field Scanner is implemented as a single-page application and hosted via GitHub Pages (https://mrx-org.github.io/anyfield/). Python-based sequence programming is executed through Pyodide, enabling pulse sequence design without an individual Python installation. Sequence plotting is rendered using WebGPU-accelerated visualization. MRI simulation is performed via API calls to a PDG [2] simulation backend. Image reconstruction (FFT and NUFFT with density compensation) runs in-browser, yielding 3D NIfTI outputs (magnitude and phase). Reconstructed images are rendered in a Niivue-based viewer with full 3D capabilities. FOV planning with rotation and translation is supported using a new standardized NIfTI-based phantom description [4] obtained from BrainWeb [5] data. Deep-link URLs encode full sequence configurations or links to seq-files for reproducibility and sharing of simulation results. The complete source code is available on GitHub (https://github.com/mrx-org/anyfield). Sequences can be simulated using three different options: (i) build-in sequences, (ii) seq-file upload, or (iii) sequence files via modules as PyPulseq [6] or MRSeq [7]. For each of these possibilities one example is demonstrated: 1. Violating the CPMG condition in a built-in TSE sequence for fat suppression. Method is proposed by Hennig et al. [8]. 2. Single-shot spiral TSE sequence [9] uploaded as a seq-file from a Matlab implementation. 3. Spiral FLASH sequence from MRseq [7].

Figure 1 demonstrates the Any-Field Scanner web interface. It has similar features as a real MR scanner. Interactive FOV positioning can be done, sequence type and sequence parameter can be adapted. Simulated MR images are displayed after simulation on the right. Shared histogram controls beneath both viewers enable intuitive window adjustment. By default, sequences from the PyPulseq [6] and MRseq [7] library are preloaded alongside a set of built-in sequences. These sequence are interactive to code and parameters can be changed directly in the browser window, making it very similar to the real scanner experience. Furthermore, seq-files can be loaded directly. Both the simulated images and the underlying phantom are available for download as NIfTI files, the sequence can be downloaded as seq-file. A direct comparison of the CMPG violation of the TSE sequence is visible. Beyond the typical scanner features, the phantom can be adapted, for example fat can be switched off (delete fat in .json file). A comparison between the simulation without fat and the CMPG violation is shown in Figure 2A-B. Artifacts can be very easily studied as demonstrated for the spiral TSE sequence once simulated with fat (C) and once without fat (D). Further sequence diagrams (seq.plot and k-space trajectory) can be plotted, as shown for a spiral FLASH sequence of the MRseq module in Figure 3.

The Any-Field Scanner is designed as an open, modular framework, inviting researchers to adapt according to their own preferences. Anyone can extend the framework with custom pulse sequences, NIfTI phantoms, or alternative simulation backends beyond PDG simulation. Using API calls, simulations can be executed without requiring local hardware to perform the simulations. Deep-link sharing of protocol configurations enables reproducible, one-click access to simulated images in publication without dedicated data infrastructure. Image artifacts can be easily investigated by phantom or sequence parameter changes. More features like pTx and multi-receive-coils will be added in the following versions.

The Any-Field Scanner provides an zero-install virtual MRI scanner, available for tests, artifact search and understanding, and educational use.
Simon WEINMÜLLER (Erlangen, Germany) , Jonathan ENDRES , Deepak Charles CHELLAPANDIAN , Magda DUARTE , Felix DIETZ , Arnd DOERFLER , Moritz ZAISS
15:30 - 16:15 #54553 - P360 Towards end-to-end differentiable in-silico MRI: from literature-curated tissue parameters to multi-objective sequence optimization.
P360 Towards end-to-end differentiable in-silico MRI: from literature-curated tissue parameters to multi-objective sequence optimization.

In-silico MRI design - sequence prototyping, reconstruction validation, dictionary tuning runs a chain from literature-sourced tissue parameters through anatomy and B₀/B₁⁺ physics to a per-task objective. Mature tools exist for each link, but the joins are broken: parameter values are hard-coded without provenance, forward simulators are black-boxed behind file IO, and optimization sees only a scalar loss. Thus neither a literature update nor a per-objective gradient can traverse the chain. Inner-ear imaging makes the cost concrete: fluid-space and temporal-bone protocols demand high resolution under severe local ΔB₀ from complex fluid–air–bone interfaces, while BrainWeb [1] omits the inner ear and MIDA [2] is a single whole-head instance at this resolution. We collapse the chain into one JIT-compiled, reverse-mode-differentiable JAX graph - citation-grounded LLM-curated parameters, an inner-ear-augmented MIDA-like phantom, B₀/B₁⁺ and Bloch/EPG physics, all the way to the objective - so gradients and provenance flow end-to-end. This differentiability then lets analytical multi-task combination (MGDA [3], conFIG [4]) replace weighted-sum scalarization for multi-objective MRI sequence and dictionary design.

Donor inner-ear anatomy (anonymized cadaveric specimens under institutional approval; cochlea, vestibule, semicircular canals) is delineated on flat-panel volume CT (99 µm) and photon-counting CT (200 µm), then registered into BrainWeb [1] hosts via 6-DOF transforms streamed from a hand-held device through `greifer` [6] (OpenIGTLink [5] → 3D Slicer [7]); rasterization commits the pose to the voxel grid. Tissue parameters (T₁, T₂, T₂*, M₀, χ) are drawn from `spectraits`, a consensus database curated by three sequential LLM agents (extraction, audit, correction) with cite-keyed provenance and field-strength scaling [8]. Source documents enter via automated DOI resolution returning JATS, publisher-native XML, or `docling` [16]-extracted XML for PDF-only sources, normalized to a unified document model; the database currently spans ~70 measurements across ~25 tissue species. The forward physics layer composes ΔB₀ via Fourier-domain dipole convolution [9] with zero-padding [10], an order 0-3 spherical-harmonic shim, a synthetic B₁⁺ generator, and Bloch/EPG simulators yielding magnetization trajectories for arbitrary flip-angle, TR and RF-phase prescriptions. All stages share a single JAX [11] code path - JIT-compiled, GPU-accelerated and reverse-mode differentiable (Fig. 1). A solver composes per-objective gradients via MGDA [3] or conFIG [4], replacing weighted-sum scalarization to enable acess to Pareto-optimal solutions.

Each voxel carries multiple parameters (T₁, T₂, T₂*, M₀, χ, ΔB₀, B₁⁺; Fig. 2A–F); empirical T₁(B₀) scaling propagates the prescription across 1.5, 3 and 7 T. NumPy and JAX ΔB₀ outputs agree to numerical precision and the synthetic shim substantially suppresses peak-to-peak ΔB₀ (Fig. 2D vs. 2E). Simulated MRF trajectories separate white matter, grey matter, endolymph and perilymph (Fig. 3A). Per-iteration wall-time is overhead-floored (~85–110 ms) at low species counts and linear at ≳1000, with slopes ~0.25 ms/species (`blochjax`) vs. ~0.38 ms/species (`epgjax`) - a ~1.5× forward advantage to Bloch for 250 isochromats, offset by a larger reverse-mode memory footprint that exhausts GPU memory beyond ~1250 species, while `epgjax` reaches ≥5500 (~2.2 s/iter) (Fig. 3B). On joint flip-angle/TR-pattern design under identical box constraints, MGDA, conFIG and weighted-sum scalarization converge to qualitatively distinct operating points: scalarization saturates the FA upper bound at the schedule edges, MGDA stays close to the seed, and conFIG balances signal/smoothness/orthogonality gradients differently again (Fig. 4); broader sweeps are ongoing.

Unlike pipelines split across disconnected stages, our single autodifferentiable backend propagates per-task gradients through the entire forward chain, so MGDA and conFIG enable conflict-aware joint design across sequence and dictionary objectives previously requiring scalar-loss reduction downstream of black-box simulators. Limitations include the preliminary B₁⁺ model and the still-growing `spectraits` database; the Bloch/EPG choice tracks whether the problem is throughput- or memory-bound. Ongoing work moves towards folding JAX-native NUFFT operators, low-rank [12] and deep-image-prior [13] reconstruction into the backend for end-to-end image-domain optimization, with Pulseq [14]-driven validation via `OpenMRF` [15].

We deliver an end-to-end differentiable JAX MRI forward model - anatomy, tissue parameters, B₀, B₁⁺ and spin physics - composed with MGDA/conFIG multi-task gradient combination on an inner-ear-augmented MIDA-like phantom, with autodifferentiation reaching from literature values to simulated signal.
Jannik STEBANI (Würzburg, Germany) , Maximilian GRAM , Petra ALBERT , Martin BLAIMER , Peter JAKOB , Kristen RAK
15:30 - 16:15 #54145 - P361 A neural network approach for efficient magnetic resonance vascular fingerprinting using spin- and gradient-echo dynamic susceptibility contrast MRI.
P361 A neural network approach for efficient magnetic resonance vascular fingerprinting using spin- and gradient-echo dynamic susceptibility contrast MRI.

MR vascular fingerprinting (MRVF) is a technique that allows for the quantification of vascular parameters such as cerebral blood volume (CBV), vessel radius and permeability [1, 2]. First, a dictionary of fingerprints is generated, consisting of MRI signals at different combinations of these parameters. Traditionally, dictionary-based matching (DBM) is then performed, in which the measured signals are matched to the fingerprints [3], e.g. by minimizing the squared Euclidean distance. However, this approach is time-consuming, introduces discretization errors [4, 5] and may not easily adapt to patient-specific conditions such as the arterial input function (AIF) in dynamic susceptibility contrast (DSC) MRI. Therefore, we investigate the use of a fully-connected neural network (FCNN) for MRVF in order to obtain accurate vascular parameter estimates in changing patient-specific conditions while reducing storage and computational cost.

A dictionary of spin- and gradient-echo (SAGE) DSC signals was generated following Van Dorth et al. [6], by varying the following parameters: CBV (10 values, logarithmically-spaced between 0.5% and 8%), vessel radius (14 values, logarithmically-spaced between 4 and 140 µm) and permeability (11 values, between 0 and 0.006 s-1). Additionally, the arterial input function (AIF) was varied by changing the coefficients of Parker’s AIF (see Figure 1) [7]. Gaussian noise was added to each fingerprint to obtain 5 noisy realizations of that signal at 5 different signal-to-noise ratios (SNR): 30, 35, 40, 45 and 50 dB. Then, a dictionary generated with four AIFs (1-4) was used for training and validation (80/20 split), while a dictionary generated with 3 AIFs (5-7) was used for testing. A fully-connected neural network (FCNN) was trained using the Optuna framework [8]. In 1000 trials the following hyper-parameters were varied: single- versus multi-head configuration [9], number of (shared) layers, (shared) layer size, use of dropout, (output) activation function, learning rate (scheduler), weight decay, loss function and the number of singular values in compression of the SAGE signals. Each trial involved training for at most 500 epochs and unpromising trials were pruned early. Then, the model of the trial with the lowest mean square error on the validation set was selected. Performance of the FCNN was compared to DBM based on the root-mean-square-error (RMSE) between the estimated and ground truth parameter values averaged over different signal-to-noise ratios (SNR).

The architecture of the best-performing model is shown in Figure 2, which had a validation loss of 0.008. The complete model requires 2.3 MB of storage, compared to 61 MB of the dictionary. A comparison of the performance of this model to DBM is shown in Table 1. The FCNN outperforms DBM in CBV estimation while the opposite is true for permeability. The techniques perform similarly in case of the vessel radius. The SNR level had little influence on the RMSE, as illustrated by the small standard deviations. Running inference of the NN took 0.52 seconds on an Intel Core i7-1370P CPU (14 cores, 32 GB RAM) whereas DBM took 50.47 seconds.

Compared to DBM, the storage requirements of the FCNN were already 20 times smaller while computation time was almost 100 times faster. These benefits will only increase as resolution or dimensions are added to the dictionary, as the size of the FCNN remains the same. Overall performance of the FCNN and DBM was similar, showing that a FCNN can serve as an efficient replacement of the DBM technique.

A fully-connected neural network can be used to estimate vascular parameters with similar accuracy as dictionary-based matching techniques at a reduced storage and computational cost. Future work includes the generation of a larger dictionary with more variation in AIF and varying bolus arrival times. Furthermore, performance of the FCNN will be investigated in vivo.
Karen VAN DER WERFF (Rotterdam, The Netherlands) , Marion SMITS , Stefan KLEIN , Frans VOS , Dirk POOT
15:30 - 16:15 #54147 - P362 A Generalized RF Preparation Framework: Application to 3D FLAIR.
P362 A Generalized RF Preparation Framework: Application to 3D FLAIR.

Preparation pulses are a core element of inversion recovery (IR) sequences and prepare the magnetization before signal acquisition to achieve a desired tissue contrast. A prominent application is the suppression of cerebrospinal fluid (CSF) in fluid attenuated inversion recovery (FLAIR) [1,2]. In standard FLAIR, CSF suppression is achieved by preparing the magnetization with a 180° inversion pulse (Fig. 1A), almost always realized with an adiabatic full passage, which provides good robustness to inhomogeneities in the radiofrequency (RF) field. While IR sequences typically employ a flip angle of 180° in the preparation to achieve complete magnetization inversion, in theory other flip angles could be used, which may offer potential advantages in sequence design such as timing flexibility. However, adiabatic pulses with flip angles between, but excluding, 90° and 180° have rarely been reported in literature. The purpose of this work was to develop and evaluate a generalized robust preparation pulse with a flip angle of 140° for use in FLAIR (Fig. 1B). The pulse was designed using optimal control with five main objectives: (1) achieve a target flip angle of 140°; (2) ensure strong dephasing of transverse magnetization to avoid residual transverse components; (3) provide robustness to imperfections in and B0 and B1; (4) short pulse duration; and (5) remain fully compliant with scanner hardware constraints. The pulse was implemented as preparation pulse within a FLAIR sequence and evaluated in a healthy volunteer, with performance compared to standard FLAIR using 180° preparation.

The preparation RF pulse was designed using time optimal control [3]. The target flip angle was 140°. Robustness to and B0 and B1 imperfections was incorporated directly into the cost functional via ensemble formulation. Robustness was targeted for ±2 ppm off-resonance at a field strength of 3T, and for a range of the RF amplitudes from 80% to 120% of the nominal RF amplitude 13.5 µT. The dwell time of the RF pulse was ∆t = 0.01 ms. Compliance with all other hardware related constraints was imposed. The optimized preparation pulse was first evaluated in extensive numerical simulations. The full Bloch equations [4] were solved to characterize flip angle and phase performance across a broad range of B0 and B1 variations. Performance metrics included the minimum, maximum, and mean flip angle and phase, as well as the interval containing 90% of the simulated values. The optimized 140° preparation RF pulse replaced the adiabatic inversion pulse used for preparation in a 3D product FLAIR sequence. Experimental data were acquired on a 3T Philips 7700 MRI scanner using a 32 channel SENSE head coil (Philips, Best, The Netherlands) in a healthy volunteer (female, 30 years old) who gave written informed consent. The 140° preparation resulted in an inversion time (TI) of 1600 ms. Other scan parameters were: 1 mm isotropic resolution, repetition time (TR) = 6000 ms, effective echo time (TE) = 300 ms, and total scan duration of 3 minutes 48 seconds. For comparison, data were also acquired using the conventional 180° inversion pulse with identical spatial resolution, TE, and scan duration. Taking the full FLAIR signal equation [1] into account, this resulted in a TI of 2000 ms at TR = 6000 ms.

The optimization yielded a complex-valued RF pulse with a duration of 4.02 ms. Key numerical parameters are summarized in Fig. 2. Fig. 3 visualizes the simulated flip angle across a broad range of off-resonances and RF amplitude scales. Inside the target robustness region (red box), flip angles are spatially homogeneous and closely match the 140° target. It is worth noting that a 140° adiabatic pulse does not exist; therefore no direct comparison is shown. In vivo scans of a healthy volunteer are shown in Fig. 4. Image contrast between gray and white matter was similar for the two versions of FLAIR. However, the 140° preparation provided improved CSF suppression, particularly in the fourth ventricle (blue arrows). The improved suppression of CSF may be attributed to more efficient inversion in regions further from isocentre.

The 140° preparation pulse achieved stable flip angle performance across the targeted B0 and B1 robustness range. In vivo, gray/white matter contrast was preserved while CSF suppression improved, particularly in the fourth ventricle, likely due to more efficient inversion away from isocentre. The shorter required TI directly illustrates the timing flexibility enabled by non-180° preparation designs.

The proposed pulse integrates directly into clinical workflow without additional user training or subject-specific optimization. Future work will explore alternative flip angles, evaluate performance in patients with neurological disorders, and extend the framework to other IR-based sequences such as double inversion recovery.
Christina GRAF (Vancouver, Canada) , Alexander JAFFRAY , Armin RUND , Alexander RAUSCHER
15:30 - 16:15 #53725 - P363 Novel Tuning of TSE slice profiles by gradient-induced CPMG-violations.
P363 Novel Tuning of TSE slice profiles by gradient-induced CPMG-violations.

Phase Distribution Graph (PDG) simulations [1] enable fast and end-to-end differentiable MRI sequence simulation. However, conventional approaches are limited to on-resonant instantaneous RF pulses, restricting realistic RF pulse modeling and preventing the simulation of slice-selective excitation. In this work, we extend the PDG framework to model shaped RF pulses while preserving differentiability, enabeling the simulation and optimization of slice profile characteristics. We investigate controlled violations of the CPMG condition in single-shot TSE [2] sequences for slice profile manipulation. The idea of employing CPMG violation to suppress signal originated from recent attempts of Hennig et al. using this effect for effective fat suppression [3].

Outgoing from a conventional single-shot TSE sequence ETL=64, we add 6 dummy refocusing pulses. After that either the imaging train starts in xy, or a single line is acquired to measure the slice profile. The slice profile is now altered not by changing the RF pulses or their respective gradients, but by introducing additional gradients in between the RF pulses to induce a position-dependent violation of the CPMG condition. These gradients are then optimized with respect to a target slice profile, which requires a simulation framework that can handle slice selection and gradient-moment-incoherent sequences. In previous work, we extended the phase graph-based MRI simulation framework MR-zero [4] to incorporate off-resonant pulse response using a hard-pulse approximation [5]. We now further extend the framework, representing a shaped pulse by a sequence of block pulses. This discretization allows continuous RF shapes to be represented within the existing formalism. For slice-selective excitation, RF segments are interleaved with gradient events. The combined action of RF pulses and gradients allows for simulation of the spatially dependent excitation profile. Preserving differentiability of the PDG framework enables gradient-based optimization of sequence parameters with respect to slice profile characteristics. Simulated slice profiles are validated against Bloch equation simulations and compared to phantom measurements acquired on a Magnetom Cima.X system (Siemens Healthineers, Erlangen, Germany).

Simulated slice profiles converge toward Bloch equation solutions with increasing RF discretization. Computational cost scales linearly with RF sample number while remaining faster than full isochromat-based Bloch simulations. More complex pulse shapes (e.g. higher time–bandwidth products) require finer discretization to achieve convergence. Fig. 1 shows simulated slice profiles for sinc-pulses and assesses slice profile convergence as well as simulation runtime. Introducing additional gradients between refocusing pulses in a RARE sequence induces a position-dependent violation of the CPMG condition, enabling spatial manipulation of the signal evolution and resulting slice profile. Fig. 2 shows such a CPMG-violated RARE pulse train. Exploiting the differentiability of the presented PDG framework, the CPMG-violating gradient strengths were optimized to tailor the slice profile. Optimization of the CPMG-violating gradients reduced effective slice thickness by a factor of two while maintaining controlled profile shape. Fig. 3 compares the initial and optimized slice profiles in silico and on phantom data. The resulting effective slice thickness is dependant on the strength of the CPMG-violating gradients.

The proposed PDG extension enables accurate simulation of slice-selective excitation while preserving differentiability. Although herein demonstrated for sinc-pulses, the method generalizes to arbitrary pulse shapes. Related methods for modeling slice profile effects have been proposed in the context of EPG [6] simulations [7,8]. These approaches inherit limitations of EPG, such as the requirement for periodic and coherent sequences. The proposed PDG-based formulation natively overcomes these constraints. The presented TSE slice profile manipulation exploits controlled violations of the CPMG condition, resulting in an intentionally incoherent sequence. The potential of CPMG violation as a mechanism for slice profile design is demonstrated. This can be used to create sharper slices when gradient or RF performance is limited (SAR, amplifiers, very thin slices). Optimization of the slice profile towards a customized shape demonstrates the capability of the extended PDG framework for targeted and flexible sequence design.

Controlled CPMG violation is demonstrated as a mechanism for slice profile design in single-shot TSE imaging. Using CPMG-violation slice-profile sharpness was increased without modification of RF pulse shapes or slice-selection gradients. Allowing for increased sharpness under hardware- or SAR-limited conditions. The proposed extended PDG framework enables optimization of such non-coherent sequences and opens new possibilities for flexible sequence design.
Felix DIETZ (Erlangen, Germany) , Simon WEINMÜLLER , Jonathan ENDRES , Moritz ZAISS
15:30 - 16:15 #54483 - P364 Pseudo-lesion suppression in fluid-attenuated 3D TSE using end-to-end optimization.
P364 Pseudo-lesion suppression in fluid-attenuated 3D TSE using end-to-end optimization.

Fluid-attenuated 3D TSE sequences (e.g. 3D FLAIR SPACE) can suffer from unexpected artifacts that impair image interpretation. Pseudo-lesions (PL) may appear in healthy anatomical regions as hyperintense structures whereas no abnormality is visible on corresponding MPRAGE sequences. PL are observed along a preferred direction, which indicates an acquisition-related origin. In this work, we investigate the origin of PL and extend an end-to-end variable flip angle (VFA) optimization including two dedicated loss terms targeting point-spread-function (PSF) asymmetry and PL intensity. The results are validated using simulations and in vivo experiments.

Measurements were performed using standard SPACE and HyperSPACE with optimized VFAs on a 7T clinical scanner. The acquisition uses an elliptical k-space sampling with 43 shots, echo train length of 220, under-sampled outer k-space region and fully sampled k-space center (Fig.1A). Two new loss terms were added to the existing VFA optimization framework [1]: A directional PSF loss penalizing PSF energy along sampling-related preferred directions. Unlike a generic PSF-sharpness term, this loss is anisotropic and directly tied to the geometric direction of the artifact. A PL loss obtained by simulating a left–right symmetric anatomical brain structure [3]. The loss is defined as the absolute difference between the left and the mirrored right hemisphere of the reconstructed image. Because the underlying phantom is symmetric by construction, any residual hemispheric difference is, by definition, an acquisition-induced artifact and is dominated by PL behaviour. Minimizing this loss therefore directly minimizes the PL signature without requiring any pathological ground truth. The resulting VFA train was tested in vivo in healthy volunteers. To prove that the observed PL originate from the acquisition and not from anatomy, additional in vivo scans were acquired with the field of view (FOV) rotated by -45°. For further validation, both volumes of the SPACE and HyperSPACE sequence of the same healthy subject were processed by the mdbrain lesion-segmentation model [2].

The sampling table (Fig.1A) shows an overweighting and sharp edges at the top right part. The echo trains start and store the highest signal in this section. The in vivo comparison (Fig.1B) shows that PL clearly visible along the TL–BR diagonal in standard SPACE sequences and are markedly reduced for the HyperSPACE sequence. The MPRAGE image confirms the absence of true lesions. Structural sharpness and contrast are preserved. Simulation-based PSF analysis confirms the directional preference (Fig.2). The 2D PSF magnitude maps and the difference image show that PSF energy is reduced predominantly along the diagonal direction. The 1D TL–BR diagonal profile of HyperSPACE shows lower side lobes than SPACE sequence. By rotating the FOV by -45°, the observed PL pattern changes accordingly: in the standard orientation (Fig.3A) PL appear along the preferred diagonal, while with the rotated FOV (Fig.3B) they switch to the now by -45° rotated diagonal. The scanner planning view (for Fig.3B) is shown in Fig.3C. This confirms that the diagonal PL pattern is encoded by the k-space trajectory. Numerical simulations (Fig.3D) confirm that PL occur only in the preferred diagonal. For objective validation (Fig.4), the automated mdbrain segmentation model marked two PL in the standard SPACE volume of a healthy volunteer as phathologies on two different slices. On the corresponding HyperSPACE slices no lesions were marked. MPRAGE images of the same subject show no abnormalities, confirming the detections of the SPACE volumes as false positives.

The directional PSF loss and the symmetric-phantom PL loss directly target the dominant source of PL artifacts in 3D FLAIR SPACE. The FOV-rotation experiment is, to our knowledge, the first direct evidence that the diagonal PL pattern is acquisition-encoded rather than of anatomical origin or insufficient CSF suppression. The disappearance of false positives in the mdbrain model is the most clinically relevant outcome: the optimized sequence reduces incorrect AI flags on healthy subjects, which is critical for downstream automated reading.

End-to-end optimization of the VFA train in 3D FLAIR SPACE, augmented by a diagonal PSF loss and a symmetric-phantom PL loss, can reduce PL artifacts without compromising sharpness or contrast. The improvement is confirmed by an independent commercial lesion-detection model. The approach is promising for improving the reliability of brain FLAIR SPACE imaging.
Florian GRITSCH (Erlangen, Germany) , Patrick LIEBIG , Mennecke ANGELIKA , Doerfler ARND , Moritz ZAISS , Blaimer MARTIN
15:30 - 16:15 #54495 - P365 A quantitative framework for the optimization of spiral phyllotaxes for 3D radial sampling trajectories.
P365 A quantitative framework for the optimization of spiral phyllotaxes for 3D radial sampling trajectories.

Spiral phyllotaxes (SP) patterns define the arrangement of 3D radial trajectories in k-space and are used for a wide range of MRI applications such as coronary angiography [1], free-running cardiac imaging [2] and lung UTE [3]. SPs are commonly described by the number of spirals S, the number of spokes per spiral N, and the rotation angle between successive spirals α. Common ordering strategies include golden-angle rotation, tiny golden-angle [4], or linear ordering [5]; each affecting angular evolution, temporal spoke ordering, k-space coverage and eddy-current sensitivity [6]. Currently, SPs are designed empirically using only Fibonacci numbers as basis and iterating over combinations of S and N until the resulting trajectory meets the desired requirements. This makes it difficult to predict trajectory properties and to ensure consistency across designs. Here, we introduce new metrics to characterize and optimize SP arrangements of 3D radial trajectories and to enable predictable trade-offs between k-space coverage and gradient smoothness.

Our proposed framework relies on two newly introduced metrics: 1. the azimuthal angular step ΔΦ = mod(S × α, 2π), describing spoke-to-spoke endpoint angular jumps, and 2. the number of oscillations of the spirals around the polar axis ω = (N − 1) × ΔΦ / 2π. From these metrics, three candidate SP designs were selected: a Fibonacci-based design with small inter-spoke jumps but non-uniform k-space coverage (Design A: N=44, S=233, ΔΦ =−0.69°, ω=0.08; Fig. 1A), a design with uniform k-space coverage but larger jumps (Design B: N=44, S=234, ΔΦ =136.82°, ω=16.72; Fig. 1B), and an optimized design balancing both (Design C: N=22, S=458, ΔΦ =−21.44°, ω=1.31; Fig. 1C). Phantom 3D GRE MRI data were acquired with the proposed SP designs on a Siemens Healthineers Magnetom Prisma 3T scanner. Eight gradient-echo images were acquired with a bipolar multi-echo readout (TE = 3.65 ms to 18.6 ms). The matrix size and FOV were 164 and 256 mm respectively. Other acquisition parameters were: TR = 24 ms, flip angle=6°, RF phase spoiling=50°, BW=508 Hz/px. Image reconstruction was conducted retrospectively using Pipe-Menon density compensation [7] and NUFFT, with acceleration factors R ranging from 2.5 to 20. Maps of the transverse relaxation rate R2* were computed from the decay of the MRI signal with increasing echo times. The errors on the R2* fits (Normalized Root Mean Squared Error, NRMSE), and PSNR/SSIM of the first gradient-echo images were used to quantify image quality, using R=2.5 as a reference.

In individual gradient-echo images, background streaking artifacts increase with the acceleration factor and differ between designs at R=10 and R=20 (Fig. 2). R2* maps exhibit streaking artifacts at R=20, particularly prominent for designs A and B (Fig. 3). R2* NRMSE, PSNR and SSIM show degradation of image quality with higher acceleration, across all SP designs (Fig. 4). However, design C consistently shows reduced image degradation scores for all acceleration factors.

Here, we introduce new metrics (ΔΦ, ω) to characterize and optimize SP arrangements of 3D radial trajectories in k-space. We propose three candidate SP designs and investigate their effect of image quality. Design A (ΔΦ =−0.69°, ω=0.08) concentrates spokes in a narrow azimuthal band, leaving large regions of k-space region unsampled. Design B (ΔΦ =136.82°, ω=16.72) induces strong gradient switching between consecutive spokes. Design C (ΔΦ =−21.44°, ω=1.31) balances angular jump size and coverage uniformity, limiting eddy-current effects and maintaining sufficient k-space coverage. Design C yields the most robust performance across all acceleration factors. This was predictable from its unique set of (ΔΦ, ω) values but not from the values of the parameters (S, N) used commonly for SP design. Designs A and B cause similar streaking artefacts - pronounced even at moderate acceleration – although the origin of these artefacts differ (eddy-current sensitivity and k-space coverage). These effects may be further amplified at higher bandwidths or in single-hemisphere acquisitions, for which phase inconsistencies between opposite readout directions are not compensated [8]. Our framework enables optimal design depending on the application. Dynamic imaging requires uniform k-space coverage under short time scales (design B), although eddy-current constraints may make design C a favorable compromise. For static imaging applications, the smooth gradient evolution of design A may be favorable.

The newly introduced metrics ΔΦ and ω capture the k-space coverage and gradient jumps of SPs for 3D radial trajectories and facilitate their optimization. These metrics help the optimization of 3D radial MRI by enabling predictable performance across a wide range of MRI applications.
Quentin ROGLIARDO (Lausanne, Switzerland) , Ludovica VERDE , Quentin RAYNAUD , Stanislas RAPACCHI , Jérôme YERLY , Antoine LUTTI
15:30 - 16:15 #54692 - P366 Development of a 3D Spiral-encoded MPRAGE sequence in the Pulseq language for accelerated T1-weighted neuro-imaging.
P366 Development of a 3D Spiral-encoded MPRAGE sequence in the Pulseq language for accelerated T1-weighted neuro-imaging.

High-resolution anatomical T1-weighted MR scans are performed in neuroimaging studies to obtain images with high contrast between white matter and gray matter, and thus to improve the reliability of the corresponding segment the sub-structures of the brain. The MPRAGE sequence is thus commonly performed, as it provides 3D images of the whole brain in reasonable scan time. Parallel imaging is a common method to accelerate scan time, but the SNR gets impacted when high acceleration factors are used. Spiral encoding has been used to replace the Cartesian encoding within the MPRAGE sequence, due to its high time-efficient filling of the k-space [1]. Now, there is a need to disseminate this specific sequence to many imaging sites and vendors. The goal of this study was thus to develop a Spiral-encoded MPRAGE sequence using the Pulseq language [2], and then to optimize it to outperform the common Cartesian-encoded MPRAGE sequence.

The Spiral-encoded MPRAGE sequence was coded thanks to the Matlab Pulseq Toolbox (version 1.5.1): it begins by a non-selective adiabatic inversion pulse, and a delay followed by a train of gradient echoes (ETL) with spiral-out readouts. The encoding strategy consisted in a stack of stars method where spiral sampling is used in the partition direction (kx-ky) and cartesian sampling along the slice direction (kz). During one ETL, one spiral arm was acquired for each partition. This was repeated until the numbers of interleaves (Nint) reached 30, 50 or 70 per stack, using the same number of samples per interleave (3900 for ), leading to TR of 6.5 ms and acquisition times of 63.9s, 106s and 148.4s, respectively (Fig 1). The influence of longer readout time (ADCtime) was also investigated by varying the number of samples per interleave from 3900 to 1600 (Fig 2). A Cartesian-encoded MPRAGE sequence was also acquired, with the same following parameters chosen to enhance the contrast between white and grey matter [1] : flip angle of 9°, TI of 1070 ms, MPRAGE_TR of 2120ms and ETL of 144, FOV of 192×192×144 and an isotropic resolution of 1mm. The Cartesian MPRAGE had a TR of 8.7 ms and a TE of 2.35 ms and was accelerated by a GRAPPA factor of 2 or 6 (phase encoding) leading to acquisition times of 4 min 22s and 2 min 2s. The 6 different spiral-encoded MPRAGE were exported to the Pulseq file format. The protocol was applied to image the full brain of two volunteers at 3T (Prisma, Siemens). The Signal-to-Noise Ratio (SNR) and Contrast-to-Noise Ratio (CNR) were calculated in the white and grey matter.

Spiral-encoded MPRAGE images of the brain were obtained with high spatial resolution and high contrast between white and grey matter (Fig 1). Even though no image processing like deblurring or trajectory correction was performed, the images were of good quality. Some artefacts remain in the background noise, without affecting the image. The SNR tends to increase with the number of interleaves (Fig 1). In parallel, artefact at the surface of the skull can be observed independently of the number of interleaves (yellow arrow). Nevertheless, shortening the readout times by increasing the number of interleaves suppress these artefacts (Fig 2), although the acquisition time lengthens. In parallel, the CNR increased by of factor of approximately 3 as the number of interleaves increases to 70 (Fig 2). The spiral MPRAGE (Fig 3) enables to obtain images of the full brain in shorter acquisition time than the Cartesian one. Nevertheless, the SNR and CNR remained lower on the spiral images compared to the Cartesian images. While attempting to accelerate the Cartesian-encoded MPRAGE sequence through a parallel imaging factor of 6 (to reach similar scan time than the Spiral-encoded MPRAGE), a drop in SNR and CNR by a factor of 3 and 2, respectively was measured.

We successfully implemented a Pulseq spiral-encoded MPRAGE sequence with the same 1mm isotropic resolution as a cartesian-encoded MPRAGE. Images were acquired with shorter acquisition times, while maintaining good image quality. After optimization, the number of interleaves should be high while the readout time should be short to increase CNR at the expense of acquisition time. Lengthening the readout time leads to higher sensitivity to T2* decay. Also, the artefact located at the surface of the brain might be due to the presence of fat. A joint water–fat separation algorithm [4] will be put in place in future work. The sequence parameters used in this study were retrieved from [3]. Nevertheless, sequence parameters such as the flip angle, readout time and ETL, must be optimized to further improve SNR and CNR [1].

The Pulseq spiral-MPRAGE provides high-quality 3D T1-weighted images in short scan time. Some improvements are still needed to reach similar contrast between the white and grey matter than the Cartesian-encoded MPRAGE sequence. Transfer to different imaging sites and application to patients should further demonstrate its interest in neuroimaging studies.
Juliette PUEL (Bordeaux) , Nadège CORBIN , Emeline RIBOT
15:30 - 16:15 #54510 - P367 Signal-to-noise ratio optimization for radial acquisition in 23-sodium magnetic resonance imaging.
P367 Signal-to-noise ratio optimization for radial acquisition in 23-sodium magnetic resonance imaging.

Sodium MRI is characterized by lower signal-to-noise ratio (SNR) compared to conventional 1H MRI due to the relatively low abundance of sodium nuclei. Therefore, optimizing sequence parameters is vital. Repetition time (TR) and flip angle (FA) strongly influence the acquired signal amplitude, leading to a trade-off between SNR, specific absorption rate (SAR), and total acquisition time (TA). Conventionally, such optimum is achieved for a particular value of T1 and TR via choosing the Ernst angle as the excitation FA. Such approach disregards SAR considerations and practical considerations of TA. The objective of this study is to determine the optimal set of parameters that maximizes SNR while keeping SAR and TA within acceptable limits.

The signal intensity (S) for a spoiled gradient echo acquisition, expressed in Eq.1 in Fig.1, describes the dependence of the signal on TR, FA, and T1 relaxation time [1]. If radial acquisition is employed, the image SNR is proportional to S and to the square root of the number of projections in k-space (Np) (Eq.2 in Fig.1). This signal model involves multiple interdependent parameters, making direct optimization difficult. To address this, constraints can be introduced via TA and SAR. TA can be expressed as the product of Np and TR (Eq.3 in Fig.1), The relationship between SAR, FA, and TR is given by Eq.4 in Fig.1. FA and Np can thus be expressed as functions of TR. This reduces the SNR model to a function of TR only (Eq.5 in Fig.1). The SNR can then be optimized with respect to TR using numerical optimization. To experimentally verify the possibility of this optimization, scans with density-adapted 3D radial sequence [2] were performed on a homogeneous phantom with T1 of 50 ms in a 7T Siemens Terra scanner using Rapid Biomedical 1H-23Na head-only birdcage coil. To verify the relationship between SAR, FA, and TR experimentally, phantom images were acquired with varying TR (Fig.2a) and FA (Fig.2b). Finally, acquisitions were made with different Np, keeping the other sequence parameters constant (Fig.2c). Then the optimal TR was determined by maximizing the SNR. For the TA value of 6:13 min and SAR value fixed at the IEC limit of 3.2 W/kg head SAR [3], the corresponding optimal FA and Np were derived from the imposed constraints. These optimized parameters were then used in the acquisition, alongside four non-optimal acquisitions acquired with the same TA and SAR.

Phantom scans confirmed the relationships between SAR, Np, FA, TR, and SNR. SAR was confirmed to vary inversely with TR (Fig.2a) and quadratically with flip angle (Fig.2b). SNR followed the expected dependence on the square root of Np (Fig.2c). Numerical optimization found the TR maximizing SNR under the two constraints, from which the optimal FA and Np were derived. TR, FA and Np were 25ms, 38° and 14698 projections, respectively. The resulting theoretical and experimental SNR values are illustrated in Fig.2d with optimal theoretical constrained SNR reaching 93.8% of the SNR expected at the same TR and TA with Ernst angle (53°) acquisition.

Conventional SNR optimization methods in MRI are commonly based on the spoiled steady-state signal equation [4] where the optimum is provided by the Ernst angle. However, these approaches are not always practically applicable. In this work, introducing constraints on SAR and TA enabled a practical optimization of the sequence parameters while maintaining realistic acquisition conditions. The proposed work showed that SNR optimization can be reduced to the optimization of a single parameter, TR, from which the corresponding optimal FA and Np can be derived. The experimental results demonstrated a good fit between the theoretical model and phantom measurements. The optimal parameters provided significant SNR improvement compared with suboptimal acquisitions. The results also showed that the optimization is particularly effective for short TR values (5–100ms). For longer TR values, the reduction in the Np required to maintain a fixed TA leads to a rapid decrease in SNR, making these acquisitions less efficient. Additionally, for longer TR, SAR restrictions are alleviated and Ernst angle acquisitions become more favorable. Although the present study was performed on phantoms, the proposed method could be applied in vivo and may help improve the quality of sodium imaging acquisitions in clinical and research applications.

The practical framework presents a sequence parameter optimization in 23Na MRI under SAR and acquisition time constraints. By modeling the relationships between SAR, TR, FA, Np, and SNR, the optimization problem was reduced to a single-variable numerical optimization. These results demonstrate the potential of the proposed method to improve sodium MRI acquisition efficiency and image quality.
Romane MINNE , Christophe PHILLIPS , Laurent LAMALLE , Mikhail ZUBKOV (Liege, Belgium)
15:30 - 16:15 #54067 - P368 Systematic Evaluation of Non-Cartesian k-Space Sampling Schemes for Potassium-39 MRI.
P368 Systematic Evaluation of Non-Cartesian k-Space Sampling Schemes for Potassium-39 MRI.

Potassium (³⁹K) MRI is an emerging technique for non-invasive assessment of intracellular potassium, an important electrolyte involved in cellular homeostasis, muscle function, and numerous physiological processes. However, ³⁹K MRI is inherently challenging due to the low gyromagnetic ratio of ³⁹K (γK = 1.99 MHz/T, ~21× lower than ¹H), low physiological concentrations, and extremely short transverse relaxation times (T₂* ≈ 1.2–8.1 ms)[1]. These constraints necessitate ultrashort echo time (UTE) sequences with non-Cartesian k-space sampling to capture sufficient signal before rapid decay. While several non-Cartesian trajectories have been proposed for X-nuclei imaging, a systematic head-to-head comparison under matched conditions in vivo has been lacking.

We implemented six center-out UTE trajectories in MATLAB using the Pulseq framework (v1.5.1): three radial[2] (3D-Radial Spherical [3D-Rad-S], 3D-Radial Cuboid [3D-Rad-C], Stack-of-Stars [SoSt][3]) and three spiral-type (3D-Cones[4], Floret[5][6], Spiral Disks [SpiDi]). All trajectories were first evaluated in a 100 mM K₂PO₄ agar phantom using a dual-tuned ³⁹K/¹H surface coil at 7T at 8 mm isotropic resolution. Prior to in vivo measurements, the sequences were additionally tested on a phantom using a dual-tuned ²³Na/³⁹K volume birdcage coil (Rapid Biomedical, Rimpar, Germany) at 7T. In vivo ³⁹K MRI of the human calf muscle was subsequently acquired in a single healthy volunteer using the same volume birdcage coil. Five trajectories (3D-Rad-S, 3D-Rad-C, 3D-Cones, Floret, SpiDi) were evaluated in vivo under matched acquisition parameters; SoSt could not be executed in vivo due to SAR constraints.

All six trajectories were successfully implemented and produced ³⁹K images across both phantom configurations. With the surface coil at 8 mm isotropic resolution, 3D-Rad-S achieved the highest mean SNR (12.48) and Floret the best SNR efficiency (0.448 /√s). With the volume birdcage coil at 15 mm isotropic resolution, 3D-Rad-S again achieved the highest mean SNR (21.08) and SNR efficiency (0.745 /√s). All five trajectories tested in vivo at 10 mm isotropic resolution successfully produced ³⁹K images of the human calf muscle, with 3D-Rad-S again yielding the highest SNR. As SNR scales with voxel volume, the absolute SNR values across the three datasets are not directly comparable, however, the consistent ranking of 3D-Rad-S across all three measurements suggests a trajectory-dependent performance advantage under these acquisition conditions. Repeated in vivo measurements in a larger volunteer cohort are needed for definitive conclusions.

Our initial in vivo results demonstrate the feasibility of ³⁹K MRI of the human calf muscle at 7T using Pulseq-based non-Cartesian UTE sequences with a volume birdcage coil. While 3D-Rad-S yielded the highest SNR in this single measurement, it remains unclear whether this advantage is intrinsic to the trajectory or driven by other experimental factors. A complete in vivo comparison including SoSt, which could not be acquired due to SAR constraints, also remains an important objective. Future work will focus on resolving these SAR limitations, performing repeated measurements to assess reproducibility, and expanding the volunteer cohort to establish robust trajectory performance rankings under in vivo conditions.

We successfully implemented and systematically compared six Pulseq-based non-Cartesian UTE sequences for ³⁹K MRI at 7T, demonstrating their feasibility from phantom validation through to initial in vivo calf muscle imaging. Across both phantom coil configurations and the initial in vivo measurement, 3D-Rad-S consistently emerged as the top-performing trajectory in terms of SNR, while Floret showed improved SNR efficiency. Future work will focus on resolving SAR constraints for SoSt, performing repeated measurements to assess reproducibility, and expanding the volunteer cohort to establish robust trajectory performance rankings under in vivo conditions.
Niklas NAEF (Bern, Switzerland) , Jordan HÖHN
15:30 - 16:15 #54363 - P369 Morphological lung MRI using an undersampled 3D UTE radial trajectory with anisotropic field of view.
P369 Morphological lung MRI using an undersampled 3D UTE radial trajectory with anisotropic field of view.

Compared to other UTE strategies, 3D radial center-out trajectories offer unparalleled visualization of short-T2* lung tissue. However, the vast number of spokes required to satisfy the Nyquist criterion demands long acquisition times, exemplified in this work by a clinically inacceptable breath-hold of 89 seconds for fully sampled in-vivo data at a spatial resolution of 2.0 mm using an anisotropic FOV. While 3D FLORET[1] theoretically offers a more uniform k-space coverage, its typical implementation features an inefficient isotropic FOV and longer readouts can lead to blurring of short T2*-tissues. This study demonstrates that a 3D UTE radial trajectory using variable anisotropic FOV and spiral phyllotaxis (abbr. as RadialVASP)[2] maintains excellent image fidelity and structural integrity even at significant acceleration factors. To validate this, we systematically compared the undersampling performance of RadialVASP across a structural phantom, a custom-built lung phantom, and an in-vivo measurement with breath-hold of 89 s. In-vivo data were compared with 3D UTE FLORET trajectories.

Sequences were optimized on the lung phantom (Figure 1) which was constructed from two different types of sponges featuring distinct pore sizes and absorbencies. To mimic properties of parenchymal lung tissue, the sponges were treated with a solution of NaCl (conductivity), CuSO4·5 H2O (fungicide), and MnCl2·5 H2O (T2*), and distinct proton densities were adjusted (0.18 g·mL 1 und 0.09 g·mL 1). Mean T2* times of 0.91 ms and 1.04 ms (3T) were obtained for the respective sponges. The phantom was flanked by customized agar phantoms (0.9% NaCl, 5% agar, 0.1% CuSO4·5 H2O) with a mean T2* time of 57 ms to replicate a typical shape and extension of a patient. SNR for FLORET is maximized for ADC≈0.97·T2* while a further common approach is to use ADC≈2·T2* readout FLORET to reduce scan time [3,4]. Thus, two FLORET trajectories were implemented accordingly. Trajectories were implemented in Pulseq[5] with an isotropic resolution of 2.0 mm, α=3° and TE=0.04 ms. RadialVASP was used with an anisotropic FOV of 350x250x350 mm, FLORET with isotropic FOV of (350 mm)3. Other sequence parameters were: RadialVASP (TR=1.17 ms, ADC=0.35 ms, 76355 spokes, ~89 s) FLORET (TR=1.55 ms, ADC=0.70 ms, 22620 spirals, ~35 s) FLORET (TR=2.35 ms, ADC=1.46 ms, 7917 spirals, ~19 s) For RadialVASP, fast spoiling[4,6] and a Fibonacci reordering scheme[2] using Fibonacci number 34 was applied. For FLORET, fast spoiling[4,6] and a Fibonacci reordering scheme[6] using Fibonacci number 377 was applied. Data were acquired on a 3T MAGNETOM Prisma Fit scanner (Siemens Healthineers, Erlangen, Germany). As a fully sampled k-space for RadialVASP takes 89 s, a healthy volunteer (f/165 cm/57 kg) underwent special training using the Wim-Hof-method[7,8] for two weeks to perform the breath-hold in-vivo measurement. Data were retrospectively undersampled up to a factor of R=16 for both phantoms and in-vivo measurements and reconstructed using an iterative non-Cartesian SENSE reconstruction (Figure 2).

Implementing an anisotropic FOV in RadialVASP reduced the required number of spokes and overall scan time by 20% compared to an isotropic FOV. High image quality was maintained across both phantoms and in-vivo scans up to an acceleration factor of R=16 (Figure 2). Counterintuitively, in-vivo image sharpness progressively improved from R=1 to R=4. The R=4 reconstruction yielded the optimal image by excluding late-scan diaphragmatic motion during the 89-s breath-hold, evidenced by shifting diaphragm positions across undersampling factors. While blurring emerged at higher acceleration factors (R=8 to R=16), overall structural integrity and good image quality were robustly preserved. To evaluate performance at comparable acquisition times, undersampled RadialVASP (R=3, 30 s; R=4, 22 s) was compared to fully sampled FLORET scans of 35 s and 19 s (Figure 3). While the 35 s FLORET acquisition yielded image sharpness comparable to RadialVASP at R=3, performance diverged significantly at shorter scan times. The 19 s FLORET scan exhibited substantial blurring and the lowest overall sharpness, rendering it visually inferior to the comparable 22 s RadialVASP at R=4.

Despite substantial undersampling and faster scan times for R=4, RadialVASP provides comparable performance as fully sampled FLORET and maintains excellent image fidelity. Consequently, these high-quality, undersampled RadialVASP datasets can reliably yield morphological image quality.

These preliminary results suggest, that undersampled RadialVASP represents a promising alternative to fully-sampled FLORET for obtaining high-quality morphological images. The use of an anisotropic FOV increases the efficiency of RadialVASP compared to an isotropic radial FOV. Further evaluation in larger cohorts, including patients with obstructive lung disease, is warranted.
Sebastian SCHEIDEL (Würzburg, Germany) , Viktor HARTUNG , Simon VELDHOEN , Tobias WECH
15:30 - 16:15 #53653 - P370 Spin-Lock based sensing of oscillating magnetic fields in inhomogeneous RF transmit fields.
P370 Spin-Lock based sensing of oscillating magnetic fields in inhomogeneous RF transmit fields.

The development of novel spin-lock (SL) based methods for direct detection of neural activity via concomitant biomagnetic fields is an active area of research [1-3]. A major limitation of applicability is the sensitivity to B0 and B1+ field inhomogeneities, which is well known from spin-locking [4-6]. The present work introduces a compensation approach for B1+ field inhomogeneities based on an omnidirectional rotary excitation (OREX) preparation, enabling statistically reliable detection that remains robust in the presence of RF transmission field inhomogeneities.

The OREX sequence (see Fig. 1) is a method for detecting oscillating (bio)magnetic fields based on the REX effect: magnetization aligned with a SL pulse can be tilted away from its axis by a resonantly tuned magnetic stimulus field. Subsequent pulses provide slice selection and ensure that the REX-induced magnetization components are rotated into the transverse plane before spiral data acquisition. In the phantom experiment, a stimulus frequency of 120Hz, which is the frequency range relevant in epileptic brain activity, was applied according to the tREX concept [2]. Detection experiments were performed using 600 resonant (fSL=fStim) and off-resonant (fSL=140Hz) measurements. Given a TR of 1s, the data acquisition took 20 minutes. The according detection and p-value maps are compared to an experiment with swept SL frequency (fSLnominal=90…190Hz, 3Hz step size). These experiments with 10 repetitions per frequency were also performed in 20 minutes using a shortened TR of 0.35s. Shortening of TR was feasible since the OREX sequence retains the magnetization previously aligned with the SL pulse direction. The experiments were performed on a clinical 3T whole-body system (MAGNETOM Prisma) with a 64-channel Head/Neck receive coil using a spherical calibration phantom (demineralized water doped with 1.25g/L NiSO4, T1=280.7ms, T2=204.9ms, T1ρ=234.1ms, T2ρ=261.3ms). All sequences were implemented in the Pulseq framework [7] using the OpenMRF toolbox [8]. B0 and B1+ maps were measured using the WASABI technique [9].

Fig. 2 depicts the phantom, the t-test results for detection of the 10 nT stimulus, and the corresponding field conditions. The most prominent hyperintense ring corresponds to the region where B1+ deviation is minimal (0.95
The effect of field inhomogeneities on detection performance is evident in Fig. 3. Near the phantom edges, the nominal amplitude of RF pulses is not reached (B1+<1), shifting the resonant interaction to higher SL frequencies. In contrast, in central regions where B1+ is elevated, resonance occurs at lower nominal SL frequencies. If the range of B1+ values is known, OREX allows correction via accelerated sampling of the relevant frequency range. While fitting simulated spectra to determine the detection amplitude is possible, it is computationally demanding. A more efficient alternative is to estimate the amplitude from the data point closest to resonance, with smaller frequency steps reducing the approximation error. This simple correction preserves the spin-lock resonance condition; however, as all RF pulses are also affected by B1+ inhomogeneity, a residual degradation persists, which, however, does not significantly impair detection performance (see Fig. 4C).

By acquiring a SL spectrum, frequency-selective magnetic field detection remains robust and statistically reliable even under substantial B1+ inhomogeneity. Using an accelerated OREX sequence, this can be achieved within in vivo-compatible acquisition times and could therefore represent a substantial step toward reliable detection of neuronal activity.
Petra ALBERT (Würzburg, Germany) , Maximilian GRAM , Samuel ANTL , Luna TORRES , Tom GRIESLER , Charlotte Luisa SCHÄFER GÓMEZ , Thomas KAMPF , Magnus SCHINDEHÜTTE , Jannik STEBANI , Martin BLAIMER , Jakob PETER MICHAEL , Peter NORDBECK
15:30 - 16:15 #53402 - P371 HYFI-ZTE imaging with MTF smoothing: Efficient PSF optimization in solid-state MRI.
P371 HYFI-ZTE imaging with MTF smoothing: Efficient PSF optimization in solid-state MRI.

Short-T2 MRI targets rapidly decaying signals and is commonly applied for T2s of 100s of microseconds, such as in collagen-bound water[1-5]. Beyond that, custom hardware and gap-filling zero-TE sequences (PETRA[6], HYFI[7]) have recently enabled imaging T2s as low as 10µs, such as in macromolecular (MM) collagen[8]. However, MRI at such timescales remains challenging: PETRA’s image fidelity suffers from a temporal disruption at the gap-to-readout transition, causing a modulation transfer function (MTF) discontinuity and thus, pronounced point spread function (PSF) sidelobes[9]. To address this, PETRA with MTF smoothing was introduced, where k-space is acquired smoothly in time, ultimately suppressing the PSF sidelobes[9]. This approach, however, requires a larger gap size, reducing scan efficiency and feasibility in vivo. Here, we extend MTF smoothing to the more efficient HYFI acquisition. Using simulations, we demonstrate that HYFI benefits from MTF smoothing, but introduces additional timing disturbances affecting the MTF and PSF. We then show that introducing incoherence can be used to account for this. Finally, we validate our approach through imaging experiments.

K-space timing combined with MR signal dynamics form the MTF which affects resulting images[10-12]. The MTF and PSF are a Fourier pair, representable in 1D by Eqs. 1-2, where PD is the proton density, and t(k) is the k-space timing. For MTF smoothing, t(k) is altered only in the gap according to Eq. 3, where B and C are coefficients determined by bandwidth bw and dead time DT[9]. E and σ are tuning parameters that affect MM PSF behavior. PETRA acquires the gap strictly on the curve t(k), hence each k requires another shot. HYFI relaxes this condition: consecutive k-space points are assigned to a common shot, provided that they fall within a range [t(k) t(k)+tacq], where tacq is defined by Eq. 4 with T2 and A representing the decay of a target tissue and its permitted fraction of decay, respectively. Figure 1 presents 1D simulations comparing HYFI with and without MTF smoothing on a solid-like decaying signal (Gaussian, T2=15µs). A=0, corresponds to PETRA. Without MTF-smoothing, k-space timing shows a disruption at the gap-to-readout transition, which translates to an MTF discontinuity that produces PSF sidelobes. With MTF smoothing, the discontinuity is eliminated and PSF sidelobes are suppressed. For A=0.15, MTF smoothing continues to suppress the most prominent PSF sidelobe, supporting its use for HYFI. However, temporal disruptions occur in k-space at the HYFI transitions, reintroducing sidelobes. To further suppress PSF sidelobes, we introduce incoherence by varying gap-filling parameters, E, σ, and A, across multiple signal averages, smoothing temporal disturbances at HYFI transitions. For 5 candidates, independent parameters are optimized to minimize the average PSF error vs. target PSF (Eq. 5), with tunable α balancing scan efficiency. Figure 2 shows optimized candidates vs. the target. Each candidate has distinct MTF discontinuities that produce PSF sidelobes. However, averaging cancels out discontinuities, with the average PSF approaching the target. Imaging experiments were performed on 3D-printed resin spheres using a 3T Philips Achieva system with a custom gradient[13], fast transmit-receive switches[14], and a 100-mm-diameter MR-invisible quadrature birdcage coil[15]. Acquisition parameters correspond to simulations in Figure 1. An FID was acquired with a 2µs block pulse (FA 9.5°) and images were acquired with a 2µs frequency-swept pulse (FA 2.7°).

Figure 3 presents MR experiments on the resin spheres. The FID decays with a T2 ~10µs, like MM collagen. For standard HYFI imaging with A=0, spheres have non-uniform intensity variations with brightened edges. With MTF smoothing, the spheres become more uniform, and the bright rim is absent. For A=0.15, artifacts due to HYFI transitions become apparent. However, the improvements of MTF smoothing are comparable to A=0. Figure 4 presents MFT-smoothed HYFI using optimized incoherent averaging. Each candidate image has non-zero A, with shorter scan time compared to the target, and presents distinct HYFI artifacts. By taking the average, the HYFI artifacts cancel out, approaching the quality of the target image.

MTF smoothing was applied to HYFI to address abrupt k-space timing variations at improved scan efficiency. MTF smoothing achieved the desired suppression of sidelobes, but the HYFI transitions introduced new sidelobes for MM signals. These were accounted for by introducing incoherence into the scan through varying acquisition parameters. Instead of multiple signal averages, also interleaves could be exploited similarly.

HYFI with MTF smoothing provides optimized PSFs for solid-state signals at high scan efficiency with the potential for improved, larger-FOV, in vivo assessment of MM collagen.
Jason Daniel VAN SCHOOR (Zurich, Switzerland) , Markus WEIGER , Klaas Paul PRÜSSMANN
15:30 - 16:15 #54231 - P372 Application of Sinusoidal Gradient Waveforms for Ultrashort Echo Time (UTE) Imaging.
P372 Application of Sinusoidal Gradient Waveforms for Ultrashort Echo Time (UTE) Imaging.

The ultrashort echo time (UTE) technique is often the method of choice when tissues with very short transverse relaxation times (T2/T2* < 100 µs), such as cartilage, ligaments, tendons, and bone, are of interest. Despite its proven efficiency in detecting fast T2* relaxation signals, one major obstacle to routine clinical application remains its sensitivity to eddy current–related artifacts (1). The purpose of this study was to address these limitations and design a UTE-type experiment with improved robustness to gradient system imperfections.

It has been shown that physical gradient channels can be reasonably modeled as linear time invariant systems (2) , which can be characterized in the frequency domain by the gradient system transfer function (GSTF) (3, 4). The impact of the GSTF on UTE experiments arises from its alteration of the spectral characteristics of the readout gradient waveform, leading to its shape deformation and deviations from the prescribed sampling trajectory. Consequently, various calibration and correction approaches have been proposed to mitigate image quality degradation. Here, we investigate an alternative approach based on: 1. the use of readout gradients with a monochromatic frequency spectrum, such as sinusoidally shaped gradient waveforms, which may be less sensitive to spectral system distortions, 2. the application of a simple calibration procedure to determine gradient delays. A custom time-interleaved 2D-UTE multi-echo pulse sequence using sinusoidally shaped gradients was implemented, as shown in Fig. 1. The measurement begins with rapid trajectory calibration scans to acquire information about gradient readout delays in all three physical gradient channels, followed by interleaved multi-echo acquisition. The gradient delays from the calibration data were determined using cross-correlation similarly to a previously reported method (5) and were used to calculate the actual sampling trajectories during image reconstruction. All experiments were performed on a clinical whole-body 3T scanner (Siemens Healthineers Magnetom Cima) using a whole-body RF coil for transmission with a flexible 4-channel phased-array receive coil for phantom measurements or an 18-channel transmit/receive coil for in vivo measurements. Image reconstruction and data processing were conducted offline using custom MATLAB routines (The MathWorks, Natick, MA, USA). Knee imaging was performed using a multi-echo 2D-UTE time-interleaved pulse sequence with four-time interleaves, yielding a total of 60 echo images. Only monopolar echoes were selected for reconstruction, providing echo times of TE = 0.07, 0.4, 0.8, 1.2, and 1.68 ms, followed by equidistant echo spacing up to 23.74 ms. The remaining parameters were: repetition time (TR) = 60 ms, flip angle (FA) = 25°, sampling bandwidth (BW) = 980 Hz/pixel, FOV = 170 mm, reconstruction matrix = 256 × 256, slice thickness = 5 mm, and 399 half-projections acquired. In addition, chemical shift selective (CHESS) fat suppression was used. The total measurement time was about 3 minutes and 20 seconds, including two HP-VERSE excitations for slice selection and trajectory calibration performed at the beginning of the measurements.

A typical example of a dataset obtained from the gradient calibration measurement and the estimation of the gradient delay is shown in Fig. 2. The following delays were obtained for this case: 3.72 µs, 4.48 µs, and 4.35 µs for the x, y, and z gradient channels, respectively. The effectiveness of the trajectory correction was further evaluated by comparing UTE images of a phantom acquired with trapezoidal and sinusoidal readout waveforms, as shown in Fig. 3. The trapezoidal readout images were reconstructed using a separate calibration measurement for sampling trajectory correction. For improved comparison, intensity profiles from both datasets were also plotted, as shown in Fig. 3C. The performance of sinusoidal readouts under in vivo conditions was evaluated in knee imaging (see Fig. 4). No visual differences were observed between images reconstructed using automatically calibrated sinusoidal trajectories obtained directly from the measured subject (Fig. 4A) and trapezoidal trajectories requiring a separate calibration measurement (Fig. 4E).

The proposed sinusoidal readout strategy simplifies trajectory calibration by enabling direct subject-specific calibration during the examination while maintaining image quality comparable to calibrated trapezoidal trajectories.

Both phantom and in vivo experiments suggest that the use of a sinusoidally shaped readout gradient waveform simplifies trajectory calibration and minimizes eddy current–related image artifacts, which may facilitate the future routine integration of UTE-type measurements into the clinical environment. Acknowledgements This work was funded by Czech Science Foundation grant no. GF25-19984L. Also, this research was funded in whole or in part by the Austrian Science Fund (FWF) 10.55776/PIN5555423.
Peter LATTA (Brno, Czech Republic) , Veronika JANACOVA , Martin KOJAN , Lubomír VOJTÍŠEK , Vladimir JURAS
15:30 - 16:15 #54255 - P373 Maintaining the point spread function in multi-dead-time direct collagen MRI.
P373 Maintaining the point spread function in multi-dead-time direct collagen MRI.

Macromolecules such as collagen exhibit signal decays with ultrashort T2s on the order of microseconds [1-3], which prohibits their detectability with conventional MRI [1,4-6]. Only recently, gap-filled zero-echo-time (ZTE) sequences such as PETRA [7] have enabled their direct observation [8]. In these sequences, the effective signal decay depends on both the intrinsic transverse relaxation and the particular acquisition strategy [7,9], rendering the point spread function (PSF) highly sensitive to imaging parameters [10]. In multi-dead-time (DT) acquisitions, DT is varied to study ultrarapid signal decays over time. However, the corresponding adjustment of parameters associated with DT remains poorly defined. Preliminary 1D simulations using gap-filling with modulation transfer function (MTF) smoothing [11] demonstrated DT-dependent PSF variations that lead to an inconsistent image geometry and potential bias in quantitative mapping. Here, a framework is proposed for selecting sets of the entangled imaging parameters in multi-DT PETRA acquisitions that preserve the PSF and thus provide a consistent effective resolution.

For MTF smoothing, the transition between single point imaging (SPI) in the DT-gap and ZTE readouts is described by an exponential function [11] with exponent E and smoothing width sigma. For each DT, these parameters were determined jointly with the imaging bandwidth bw using particle swarm optimization, such that the 1D PSF was matched to that of the shortest DT. The cost function additionally penalized the gap size (DT*bw), which determines the number of SPI acquisitions and thus scan time. The optimal parameter set is defined as P* in Eq. 1, with Omega denoting the feasible parameter space. The cost function is given by Eq. 2, where PSFtarg is the target PSF, PSF(P) the PSF obtained with parameter set P, and alpha a tunable weighting factor controlling the trade-off between PSF consistency and gap size. The fixed and optimized parameters were then compared in 1D simulations and 3D simulations of a sphere using collagen-like signal characteristics [8], as well as in MR experiments on a resin sphere with T2 ~10 µs.

Figure 1: 1D simulations of multi-DT imaging with otherwise fixed parameters show considerable variations in normalized PSFs for collagen, in particular different widths of the main lobe. The resolution improves for later DTs as the relative signal decay between adjacent k-space points within the gap is reduced. Figure 2: With optimized parameters, virtually identical normalized PSFs are achieved. Bound water signals remain unaffected from parameter alterations due to their negligible decay on this timescale. Regarding the parameters, bw decreases with increasing DT, reducing the gap size and hence the scan time, whereas the constant bw in Figure 1 leads to prolonged acquisitions. E and sigma show no obvious trend, which indicates that multiple combinations yield comparable PSFs. Figure 3: In 3D simulations, the collagen-like sphere exhibits blurred edges due to rapid signal decay. Intensity profiles demonstrate DT-dependent signal loss and improved spatial consistency following optimization. This is corroborated by variance maps, computed as the normalized, voxel-wise intensity variance across DTs. A homogeneous object with perfect geometric consistency would have zero variance. Figure 4: Experimental results confirm these findings, showing a consistent resolution of the resin sphere in intensity profiles and smaller variances when using the optimized parameters.

Varying DT alone leads to DT-dependent PSFs due to the interplay between signal decay and acquisition timing: the latter exhibits a stronger curvature near k0 for shorter DTs, resulting in narrower MTF peaks and broader PSF main lobes. In contrast, longer DTs produce more uniform temporal sampling of central k-space, reducing T2 blurring and yielding narrower PSFs. The proposed parameter optimization selects E, sigma and bw to compensate for this effect by permitting increased T2 blurring at longer DTs to match the PSF to that of the earliest DT. Notably, the overall resolution could be improved by increasing the minimum DT and maintaining the bw, e.g. DT = 14.4 µs in Figure 1. However, this would reduce the signal magnitude and thus sensitivity to collagen content. The expected improved geometric consistency was confirmed in both 3D simulations and experiments across all DTs. If necessary, further improvements may be achieved by relaxing the penalization on gap size, at the probable expense of increased scan time.

Imaging parameter selection critically affects the collagen PSF in multi-DT PETRA acquisitions. Enforcing a target PSF through parameter optimization enables consistent spatial resolution across DTs, supporting unbiased voxel-wise comparison and quantitative mapping of ultrashort T2 signals such as from protons in collagen macromolecules.
Jason VAN SCHOOR , Darlina VON SALIS (Zürich, Switzerland) , Markus WEIGER , Klaas PRÜSSMANN
15:30 - 16:15 #54335 - P374 Comparison of Fat Saturation Techniques Near Metallic Implants.
P374 Comparison of Fat Saturation Techniques Near Metallic Implants.

Magnetic Resonance Imaging near metallic implants is challenging due to strong B0 field inhomogeneities. These inhomogeneities cause artifacts in the vicinity of the implant, which can be reduced using the SEMAC (slice encoding for metal artifact correction) sequence [1]. Furthermore, fat saturation methods such as chemical shift selective imaging or the DIXON method are susceptible to these field inhomogeneities. Dynamic fat saturation (dFx) may compensate for these effects [2]. In this work, two different fat saturation techniques will be compared in combination with the SEMAC sequence on different phantoms to evaluate the effect of B0 inhomogeneities.

Data were acquired using two phantoms. The first phantom consisted of a bottle filled equally with fat and water, with the fat layer setting above the water. The second phantom consisted of two tubes with fat and a titanium spine implant embedded in agarose. All measurements were performed on a whole-body 3T system with a 2-channel transmit system (MAGNETOM Vida, Siemens Healthineers, Forchheim, Germany). Data were acquired using a SEMAC sequence with 12 SEMAC steps, a TE = 10 ms and a TR = 3190 ms. The sequence was measured once without a fat saturation pulse and twice using different fat saturation techniques: a chemical shift selective (CHESS) pre-saturation pulse [3] and an optimized dynamic fat saturation pulse (dFx) [2]. Selective fat suppression at -3.4 ppm is achieved by targeting a flip angle of 110° for fat and 0° for water at this frequency offset [4]. The CHESS pre-saturation pulse is a standard Gaussian pulse (5 ms, 200 Hz) provided by the vendor. The dFx pulse calculation is based on acquired B0 and B1 maps, following an optimization approach similar to that described in [2]. During the optimization, both the complex RF pulse and the gradient trajectory in all spatial dimensions are optimized. The duration of the dFx pulse is 10 ms. There is one single pulse calculated from all slices. An example for an optimized dFx pulse can be seen in Figure 1. To compare both techniques, following measurements were performed. First, a homogeneous fat phantom was measured after performing a B0-shim. Second, the same phantom was measured with an additional B0 gradient applied in y-direction. Both setups were measured in the transverse plane. The first setup was then repeated with a spine implant phantom in the coronal plane. The dFx pulse was calculated separately for each setup, assuming no dependency on the selected plane.

Figure 2 shows the results on the fat-water phantom without any B0 gradient. As reference one measurement is done without any fat saturation (see Figure 2b). Here, both techniques (see Figure 2c and d) suppress the fat signal complete. In the next setup, an additional B0 gradient is applied. Figure 3c demonstrates that the CHESS pre-saturation pulse does not suppress the fat signal at the top of the bottle. In contrast, the fat signal is strongly suppressed by the dFx pulse (Figure 3d). Figure 4 shows the results on the second phantom with the spine implant and fat tubes. Both techniques achieve only partial suppression in the tubes. The fat signal near the head screws of the implant is not suppressed. Additionally, the dFx method shows more artifacts near the screw heads than the CHESS pre-saturation pulse.

The first setup without an additional B0 gradient shows that both fat saturation techniques perform generally well in the fat-water phantom. However, the second setup reveals the limitations of the CHESS method. This technique is prone to B0 inhomogeneities and cannot suppress the complete fat signal in the presence of larger B0 field variations [2]. In contrast, the optimized dFx pulse remains effective despite the additional inhomogeneity, since the pulse optimization is based on the measured B0 and B1 maps. In the final measurement, the aim was to saturate the fat signal in the tubes near the spine implant. Based on the first two measurements, one might assume that the dFx pulse performs better, since the B0 inhomogeneities near a metal implant are much larger than those of the applied B0 gradient [1, 5]. Depending on the main magnetic field B0, these inhomogeneities can reach the kHz range [5, 6]. In this case, both methods reach their limits near the head of the screws of the implant. Here, the off-resonances are much larger. Additionally, the measurements show increased artifact levels compared to acquisitions without fat saturation. A possible explanation could be that the B0 map is inaccurate near the implant.

This work presents a SEMAC sequence combined with dFx saturation pulses and compares it to CHESS pre-saturation. Both methods achieve good results in setups without additional B0 inhomogeneities. While CHESS reaches its limits in the second setup, the dFx pulse remains effective. However, in the presence of metal, limitations are found with the current implementations. This is subject of ongoing investigations and improvements.
Felix TYRACH (Erlangen, Germany) , Nicolas GROß-WEEGE , Christian EISEN , Nico EGGER , Haiting HUANG , Michael UDER , Florian KNOLL , Rafael HEISS , David GRODZKI , Armin Michael NAGEL
15:30 - 16:15 #54663 - P375 Spatial-Spectral Fat Selective Excitation Sequences for Quantification of Intramyocellular Lipids in Skeletal Muscle at 3T: Preliminary Results of a Comparison to Established Methods.
P375 Spatial-Spectral Fat Selective Excitation Sequences for Quantification of Intramyocellular Lipids in Skeletal Muscle at 3T: Preliminary Results of a Comparison to Established Methods.

Obesity and insulin resistance correlate positively with intramyocellular lipids (IMCL) in skeletal muscle which is difficult to measure due to the low concentration and superposition of signals from extramyocellular lipids (EMCL) [1,2]. Proton magnetic resonance spectroscopy (1H-MRS) and Dixon-based MR sequences are established fat quantification methods; however, the latter technique is limited by the high receiver bandwidth required for multi-echo sampling resulting in increased noise acquisition. Fat selective spatial-spectral excitation sequences are able to measure the lipid content in low concentrations in the range of 0,1% as shown for 1.5T MR systems [3]. This technique uses six equidistant RF pulses, a nearly binomial amplitude ratio and an optimized low receiver bandwidth to maximize the SNR of the methylene and methyl groups of the fatty acids (0.8–1.6ppm) [4]. The aim of this work is to validate fat selective MRI using spatial-spectral excitation sequences at 3T, and the corresponding post-processing implemented in an open-source environment, and to compare them to established methods in five volunteers.

Sequence development: Spoiled gradient-echo (GRE) and spin-echo (SE) sequences were implemented using six equidistant RF pulses with an interpulse interval of 1.19ms assuming a chemical shift between water and methylene signal of 3.4ppm (420Hz) at 3T and a 0.8mm2 in-plane resolution. Both sequences were written in PyPulseq (v1.5.0) [5]. As shown in Table 1, the key GRE sequence parameters are the nearly binomial amplitude ratios of the RF-Pulses: 2°-(–8°)-15.06°-(–15.06°)-8°-(–2°) with TE=17ms, TR=165ms, a slice thickness of 8.5mm and a receiver bandwidth of 39Hz/px. The SE sequence was designed with 3.61°-(–14.66°)-26.73°-(–26.73°)-14.66°-(–3.61°) with TE=29ms, TR=2s, a slice thickness of 9.5mm and a receiver bandwidth of 48Hz/px. The sequences were validated with a custom-made phantom, containing tubes of known concentrations of peanut-oil (5%, 1%, 0.7%, 0.4%, 0.1%), emulsified with soy-lecithin in water [6] and Bloch-simulated using KomaMRI.jl (v0.9) [7]. All measurements took place on a 3T MR system (MAGNETOM Prismafit, Siemens Healthineers AG, Forchheim, Germany) where axial images were acquired using a 15ch. Tx/Rx coil. Five healthy subjects (age: 26–59 years, BMI: 18–33kg/m²) were examined on the following muscles: tibialis anterior (TA), soleus (SOL) and gastrocnemius medialis (GM) of the right lower leg. 1H-MRS: For reference, a single voxel STEAM technique was used. The voxels (10x10x20mm³) were recorded with 12 acquisitions in the three muscle regions. A Gaussian filter function (FWHM=150ms), Fourier transform and zero-order phase correction were applied as post processing using custom-built tools in MATLAB (The MathWorks, Natick, MA, USA). The integrated IMCL signal was referred to the integrated water signal to calculate the percentage fat content. Dixon: A two-point VIBE-Dixon sequence with the same in-plane resolution was used as second comparison. The fat-fraction image was then evaluated using the same evaluation protocol as for the GRE and SE sequences. Evaluation: To analyse the GRE, SE and Dixon images, the region of interest (ROI) was segmented manually. The lower 25% percentile of fat septa signal intensities defined the threshold separating IMCL and EMCL. Below this threshold, the mean signal intensity and the standard deviation of the ROI were calculated. The determined mean signal intensity was referred to the mean signal of nearby subcutaneous fat. Noise was considered and subtracted from the sample and the reference intensity following [8]. All measurements were analysed using Python (v3.13). Results are presented in [%].

The results of the evaluation, regarding the fat-measurement-accuracy are depicted in Figure 1. The Dixon sequence overestimates the peanut-oil concentration in all measurements by a median factor of 3.7, as does the GRE sequence by a median factor of 1.9. The 5% sample is underestimated by the other methods; the SE sequence and the MRS determine the exact concentration of the other samples within the standard error. In Table 2, the measured in-vivo lipid content [%] are given. The results show a high internal consistency, with mean deviation of 0.1%, putting them close to the expected literature values [2], except of the measurements performed using the Dixon sequence.

In comparison to Dixon and MRS, the spatial-spectral fat selective sequences indicate values with overall agreement to those reported in the literature. Furthermore, an improved analysis of entire muscles is achieved by high spatial coverage and high spatial resolution. The image quality suggests proceeding with the SE sequence with further optimization.

The SE sequence offers the potential to reliably determine the lipid content in healthy volunteers. Regarding prediabetes this method enables a non-invasive, straightforward analysis of subjects at risk of type 2 diabetes in future studies.
Elisa SCHWAAK (Tübingen, Germany) , Jürgen MACHANN , Petros MARTIROSIAN , Victor FRITZ , Fritz SCHICK , Martin SCHWARTZ
15:30 - 16:15 #54197 - P376 Making fast-MRI Quieter: A Timing-Optimized EPI for Acoustic Noise Reduction.
P376 Making fast-MRI Quieter: A Timing-Optimized EPI for Acoustic Noise Reduction.

Echo-Planar Imaging (EPI) is the workhorse of functional MRI. Its strength lies in the ability to rapidly acquire an entire volume of interest. To achieve this, EPI traverses k-space in a serpent-like pattern, implemented through a “train” of alternating positive and negative readout gradient pulses, where a gradient-echo occurs at the center of each such gradient pulse. The time from echo to echo is called the Echo Spacing (ESP) and is typically of the order of 1 ms or less. The current in the gradient coil has to alternate rapidly to produce this echo train, and the coils are thus subject to strong Lorenz forces, due to the presence of the static B_0 field. Consequentially, the gradient coils vibrate, giving rise to loud acoustic noise and in extreme cases mechanical damage. Common noise-reduction approaches involve modifications to the shape of the gradient waveforms, making them longer or smoother (1). However, such modifications typically prolong the acquisition time and require specialized image reconstruction. Our group recently demonstrated that introducing small timing delays (on the order of 1 ESP) between slices, or between echo times (TEs) in multi-echo acquisitions, can substantially reduce acoustic noise levels (2), while maintaining image quality and without requiring modifications in the reconstruction pipeline. To facilitate this approach, we developed a vendor-agnostic implementation of a multi-echo multi-slice EPI sequence using Pulseq (3) with flexible timing delays. We further designed a novel genetic-algorithm-based pipeline to minimize acoustic noise for a given sequence, experimentally validated on a 7T MRI scanner.

Pulse sequence programming: A configurable Matlab (Pulseq) program for 2D-EPI acquisition was developed, supporting ramp-sampling, GRAPPA, partial Fourier, and Siemens on-scanner reconstruction. This implementation enables flexible control of timing-related parameters (see in “Genetic algorithm”). Acoustic recordings: Acoustic noise was recorded using an OptiSLM 100 sound level meter (OptoAcoustics, Mazor). Frequency Response Function (FRF): Model prediction requires the system’s frequency response function (FRF) as an input. The FRF was measured before each session using a dedicated Pulseq sequence (4). Acoustic power model and optimization: A theoretical framework for predicting acoustic spectra and power was introduced (see Fig.1). A novel genetic-algorithm framework optimized EPI timing parameters using the acoustic model and FRF to identify minimum-noise configurations. Optimized parameters included T_slice (slice duration), ΔT_echo (time between echoes), navigator-to-echo-train delay, and the number of navigator lobes (see Fig.1). The inherent constraints on these parameters were formulated as a matrix-vector inequality, enabling efficient sampling of possible configurations. Phantom scanning: Predicted and measured acoustic-noise reductions were evaluated across different parameter sets (Fig. 1C) on a 7T MRI (Terra, Siemens Healthcare, Erlangen).

Three dual-echo EPI protocols (Fig. 1C) were scanned with varying T_slice and ΔT_echo while keeping TR fixed. Figure 2 shows predicted and measured acoustic power heatmaps for each case. Acoustic power varied by factors of ~3 (5 dB), ~5 (7dB), and ~24 (14 dB) for ESP values of 0.74 ms, 0.53 ms, and 0.4 ms, respectively, with good agreement between predictions and measurements. For ESP=0.53 ms, the predicted pattern showed an offset in the maxima, likely due to FRF measurement inaccuracies. To enable prediction of sound levels in dB(A), predicted and measured acoustic power were correlated with the measured sound levels in dB(A) for different scan configurations (Fig.3). Finally, acoustic-noise optimization was performed starting from an ESP of 0.53 ms and 12 tightly spaced slices (each with two echoes). Figure 4 shows optimization results for the minimal and maximal acoustic power across ESPs, comparing measured and predicted values under different TR constraints. Allowing TR increases of 2% and 20% produced acoustic-noise differences of up to ×10 (10 dB) and ×40 (16 dB), respectively.

The results show that small timing adjustments (<1 ms per slice) can substantially reduce EPI acoustic noise with minimal scan-time increase. Importantly, acoustic noise depends not only on echo spacing, but also strongly on the timing of the gradient trains. For a given application, relevant constraints can be defined to identify the optimal low-noise configuration and corresponding sequence parameters. The findings further demonstrate that the acoustic power and sound levels can be predicted using our model, although improved FRF measurements are needed for higher accuracy. The proposed Pulseq implementation enables deployment across different MRI systems, while the optimization framework provides an automated approach for reducing EPI acoustic noise and protecting gradient hardware.
Shahar GOREN (Rehovot, Israel) , Amir SEGINER , Schmidt RITA
15:30 - 16:15 #54564 - P377 Maximising Image Quality While Minimising Acoustic Noise in Looping-Star.
P377 Maximising Image Quality While Minimising Acoustic Noise in Looping-Star.

Acoustic noise in fast-slewing sequences such as EPI remains a contributor to participant discomfort during MR scans. In addition, it is a significant confound for fMRI studies, particularly those studying the auditory system. Looping-Star is a near-silent gradient-echo sequence suitable for MR studies of the auditory system [1]. However, existing implementations with straight spokes place heavy constraints on the k-space coverage achievable while keeping acoustic noise low. Here we show a preliminary implementation of Looping-Star with a continuously slewed trajectory, which reduces acoustic noise to the absolute minimum and permits greater flexibility in trajectory design.

Looping-Star is a naturally segmented sequence, each segment consisting of a set of Free-Induction-Decays (FIDs) followed by multiple sets of echoes, as shown in the pulse sequence diagram in figure 1. The cumulative trajectory during the FIDs must form a closed-loop for each spoke, which is then repeated for each set of echoes. Each subsequent segment is then rotated by a 2D Golden Angle scheme [2]. Each FID is excited in the center of its trajectory segment, so that coherences do not significantly overlap in the echoes [3]. The classic Looping-Star cumulative trajectory forms a polygon on the kx-ky plane for one entire segment. We define the gradient raster time τ, M gradient samples per spoke, N spokes per segment, and voxel-size L. The simplest form of continuously slewed trajectory forms a circle on the kx-ky plane: kx(t) = A*cos(2 * π * t / TE) ky(t) = A*sin(2 * π * t / TE) kz(t) = 0 where A denotes the amplitude, chosen such that all FIDs are crushed to at least 2 cycles of phase across voxel size L between successive excitations, and TE = MNτ denotes the echo time. However, because this trajectory is constrained to the kx-ky plane, it produces large sampling gaps in 3D k-space when the segments are rotated. We hence implemented two further trajectories to provide kz coverage, one inspired by the "Slinky" children's toy, given by: kx(t) = A * sin(2 * π * t / TE) * (1 + s/4 * cos(8 * N * π * t / TE)) ky(t) = A * cos(2 * π * t / TE) * (1 + s/4 * cos(8 * N * π * t / TE)) kz(t) = A * (1 + s/4 * sin(8 * N * π * t / TE)) and a "Saddle" trajectory: kx(t) = A * ((2/3) * sin(6 π t / TE) + sin(2 π t / TE)) ky(t) = A * ((2/3) * cos(6 π t / TE) - cos(2 π t / TE)) kz(t) = A * (-1/2) * cos(4 π t / TE) Plots of the resulting trajectories are given in figure 2. These trajectories were implemented on a 3T scanner (GE Premier, ESE 30.1). A phantom and a healthy volunteer were scanned using the above trajectories using a 48 channel head coil (GE Healthcare), with a 24cm isotropic Field-of-View, 80 isotropic matrix size (for 3mm isotropic voxels), bandwidth +/-31.25kHz, two times oversampled, 16 spokes per segment, two echoes, echo spacing 20.48 ms, resulting in a volume repetition time of approximately 3 seconds. During the phantom scan the A-weighted equivalent continuous sound level (LAeq) was measured using an MR compatible microphone (Casella CEL-495) mounted inside the bore. Images were reconstructed using the riesling toolbox [4] integrated into the scanner's on-line reconstruction (GE Orchestra 3.0.3), specifically solving an inverse NUFFT using 4 iterations of the diagonally preconditioned LSMR algorithm followed by a root-sum-squares channel combination [5, 6].

The background noise level when not scanning was measured at 63.9 dB, and then at 80.9, 65.8, 76.6, and 69.5 dB for the polygonal, circular, slinky, and saddle trajectories respectively. Figure 3 shows three-plane views of the first echo image from the healthy volunteer acquired with each of the trajectories. The polygonal trajectory (straight spokes) exhibits the worst image quality, with obvious blurring and dropout artefacts. These artefacts improve when using any of the curved trajectories, with subjectively best image quality from the saddle trajectory.

Curved trajectories with continuous slew demonstrated a reduction in acoustic noise of up to 15 dB over straight spokes while improving image quality. We will now investigate further improvements in image quality by optimizing the number of spokes per segment and rotation angles between segments.

Utilizing continuously slewed gradients enabled the implementation of new, flexible trajectories for Looping-Star with improved image quality through more uniformly distributed k-space sampling while reducing acoustic noise.
Diana CATARGIU , Jimmy BALL , Henric RYDEN , David FREY , Tobias WOOD (London, United Kingdom)
15:30 - 16:15 #54578 - P378 Initial results from concurrent human in vivo EEG and DWI MRI at 3T.
P378 Initial results from concurrent human in vivo EEG and DWI MRI at 3T.

The most widely used technique to combine the temporal resolution of EEG (ms) and spatial resolution of MRI (mm) is probably BOLD-fMRI, i.e. [1-4]. Still, this approach lacks information on tissue microstructure, which can dynamically change with neuronal activation and homeostatic regulation [5-8]. To bridge this gap, we recently proposed and demonstrated the technical feasibility of concurrent EEG and DWI MRI [22] in model solutions and present the first human in vivo data in this work. These data serve as a first step towards the investigation of dynamics in tissue microstructure in relation to brain state-dependent changes [9,10] as defined by EEG.

Data were acquired using a commercially available EEG [11] and 3T MR system [12], approved by the local ethics committee and with written informed consent obtained. The EEG operated at the highest possible sampling rate (5 kHz) and intermediate gain (0.5 uV/bin, 250Hz low-pass filter) both in- and outside the MR scanner. This ensures sufficient dynamic range of the ADC to record artifacts induced by the MR gradients and takes into account that these are switched at kHz range. For MRI, vendor provided sequences were used for anatomical images and field maps. DWI MR data were acquired using an established SE SMS EPI sequence [13] (acquisition parameters can be found at [14]). Except for adjusted shims and transmitter voltage, the same MR sequences were applied both with and without the EEG cap. To characterize the effect of concurrent DWI MRI on EEG, subjects performed simple tasks (eye-blinking, eyes open vs. closed) in- and outside the MR scanner with instructions presented on a screen and subjects indicating beginning and end of the task’s execution by button presses. EEG data were processed using vendor-provided software [15] including DC detrending, averaging of MR-related signals [16], corrections for heartbeat [17] (data based on [18]) and corrections for cardioballistic artifacts using carbon wire loops [19]. EEG data acquired outside the MR scanner were only corrected for DC variations. The MR data were processed with custom scripts implemented in MATLAB [20] for the field maps (including [23]) and based on data from online reconstruction in case of DWI evaluated in fsl (TOPUP, eddy incl. motion correction, dtifit)[21].

EEG Fig. 1 shows time-domain EEG data of a subject blinking with the eyes (top) and with closed vs. open eyes (bottom) both in- and outside the scanner. Blinking with the eyes yields larger amplitudes than so-called alpha waves (compare Fig. 1A/C) thus the latter are more challenging to resolve. Fig. 2 shows the power spectra for the data shown in Fig. 1 C/D contrasting open and closed eyes. As can be seen in Fig. 3, the amplitudes for all but the alpha band (across channels +39%) decrease when eyes are closed outside the scanner. During DWI-MRI alpha stayed unaltered for closed eyes (+1%) but all other bands showed reduced amplitudes (delta=-48%, theta=-35%, gamma=-36%). MRI The EEG cap causes reduced B1+ especially in upper areas of the brain (data not shown) with (45+/-7)% increased reference voltage (avg. x5 subjects). As shown in Fig. 4, mean diffusivity (MD, median across brain) differs by less than 3% for EEG vs. no EEG which is around 2.5 times higher than for repeated scans with EEG but also includes re-positioning of the subject inside the MR scanner.

All acquisitions indicate that the EEG system is operated with the ideal settings as changes in low-pass filter or gain resulted in corrupted data. Modifications of the MR acquisition would likely have to focus on the altered B1+ as i.e. dB0 did not change significantly in the presence of the EEG [22] while the increased reference voltage in the presence of the EEG might additionally become an issue regarding SAR at some point. Speculatively the largest room for improvement might be due to the fact that both EEG and MR data were processed largely identical irrespective of whether the data had been acquired individually or in a concurrent manner, thus likely resulting in a suboptimal choice of parameters. Also, the effect of different corrections applied to EEG data acquired in- vs. outside the MR scanner needs to be reviewed again, i.e. w.r.t. the observed differences in power in the alpha band (Fig. 3).

First in vivo data of concurrent DWI MRI and EEG were successfully acquired and allow to reliably estimate MD (<3% variation in median) in most of the brain and at the same time to detect alpha waves in the EEG data. Still, both EEG and DWI data are altered significantly when acquired in combination and future, systematic investigations on acquisition parameters for MRI and post-processing of both EEG and MRI are required to draw more quantitative conclusions.
Sebastian MUELLER (Tuebingen, Germany) , Manfredi ALBERTI , Svenja BRODT
Palau Sira
16:15

"Friday 02 October"

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I25
16:15 - 17:00

Poster 9
FT9 Neuro: Methods and Aplications

16:15 - 17:00 #54360 - P379 Time-series diffusion MRI-based mapping of regional and temporal glymphatic activity during sleep.
P379 Time-series diffusion MRI-based mapping of regional and temporal glymphatic activity during sleep.

The glymphatic system is an important mechanism for brain waste clearance, as it facilitates the removal of waste products during sleep [1]. Glymphatic dysfunction impairs waste clearance and contributes to the pathophysiology of neurodegenerative diseases [2], promoting growing interest in investigating glymphatic function in the human brain. Dynamic changes in the glymphatic system during sleep have been observed using intrathecal contrast agents [3]. However, intrathecal administration involves procedural discomfort and a potential risk of neurotoxicity [4]. Thus, diffusion magnetic resonance imaging (dMRI) has emerged as a non-invasive alternative, enabling the assessment of microstructural water movement without exogenous tracers and the detection of state-dependent changes in glymphatic activity [5]. Despite efforts to evaluate glymphatic activity using dMRI, the sensitivity of diffusion metrics in reflecting the glymphatic system during sleep, the time point at which glymphatic activity is most prominent, and the physiological relevance of these changes remain unclear. Thus, this study applied time-series dMRI to evaluate dynamic changes in the glymphatic system during sleep and to identify diffusion metrics that sensitively reflect these changes, as well as the optimal observation time point during sleep.

This study was approved by the IRB of Yonsei Univ. Mirae Campus (1041849-202305-BM-089-10). Nine participants with stable sleep throughout DTI acquisition were included in this study (mean age: 24.56 ± 2.74 years; mean sleep efficiency: 93.98%). Each participants underwent 24 h of sleep deprivation with monitored wakefulness. Participants took 10 mg of zolpidem 30 min before the first dMRI scan, which a baseline awake-state scan was obtained, followed by sleep induction and 17 additional dMRI scans at 90 s intervals, electroencephalography was evaluated by three experts, and only data with at least two-expert agreements were included. Figure 1 depicts the experimental protocol of this study. DTI was acquired using a diffusion-weighted EPI sequence with two shells (b = 800 and 2800 s/mm², 30 directions each; TR/TE = 3800/105 ms; slice thickness = 2 mm). dMRI data were preprocessed, including denoising, Gibbs ringing correction, susceptibility and eddy current distortion correction, and slice-to-volume motion correction. Diffusion coefficients were calculated along x-, y-, and z-directions, and diffusion kurtosis metrics were computed using DIPY [6]. Figure 2 depicts the preprocessing workflow for the dMRI data.

Significant changes were observed in cortical and subcortical regions. In the occipital and subcortical regions, mean diffusivity (MD) and radial diffusivity (RD) showed sustained increases over the course of sleep, whereas fractional anisotropy (FA) decreased. These changes were most prominent approximately 31 min after sleep onset. Similar region-specific differences were also observed in the kurtosis metrics. In the frontal regions, mean kurtosis and radial kurtosis decreased, whereas kurtosis fractional anisotropy increased. In contrast, temporal and subcortical regions showed the opposite pattern. Figure 3 and 4 shows brain regions exhibiting significant changes in diffusion metrics during sleep and their temporal trajectories during sleep.

The changes in diffusion metrics observed in this study exhibited region-specific temporal patterns, which reflect physiological changes occurring during sleep. These regional differences in temporal patterns suggest that glymphatic function during sleep does not occur uniformly across the brain but rather follows spatiotemporal patterns. This pattern of metric changes may reflect extracellular space expansion and ISF redistribution associated with sleep-related glymphatic activity. In the occipital and temporal lobes, consistent increases in MD and RD alongside decreases in FA were observed, suggesting that these regions are particularly sensitive to glymphatic activity during sleep. Changes in kurtosis metrics were similarly concentrated in the occipital and temporal lobes. MK showed significant changes in the occipital lobe from approximately 25 min after sleep onset, while RK demonstrated sustained decreases from approximately 19 min onward. Taken together, the occipital and temporal lobes appear to be the most sensitive regions for detecting sleep-related glymphatic activity. These findings highlight the complementary value of employing multiple diffusion metrics for a more comprehensive characterization of the spatiotemporal dynamics of glymphatic activity during sleep.

Time-series dMRI demonstrated region- and time-dependent patterns of glymphatic CSF influx during sleep, with marked diffusion changes observed in the occipital and subcortical regions. These findings suggest that dMRI may serve as a non-invasive method for evaluating region-specific glymphatic function and as a potential imaging biomarker for neurodegenerative disease research.
Chang-Soo YUN (Incheon, Republic of Korea) , Chul-Ho SOHN , Jehyeong YEON , Kun-Jin CHUNG , Byong-Ji MIN , Chang-Ho YUN , Bong Soo HAN
16:15 - 17:00 #53352 - P380 Structural and functional assessment of the calcarine sulcus in cerebral small vessel disease: a multimodal investigation of a biomarker.
P380 Structural and functional assessment of the calcarine sulcus in cerebral small vessel disease: a multimodal investigation of a biomarker.

Cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL) is a hereditary small vessel disease (SVD) caused by NOTCH3 mutations, associated with widespread cerebral structural and functional alterations detectable by MRI [1]. We recently showed that the calcarine sulcus (CS), primary input of the visual cortex, is a meaningful region of interest for discriminating pauci-symptomatic CADASIL patients from sex- and age-matched control subjects using fast BOLD fMRI [2]. CADASIL patients also exhibit altered cortical morphology, including gray matter (GM) thickness [3,4] and sulcal shape [3,5]. However, no study has addressed how functional defects correlate with morphological variations. Here we investigated CS functional and morphological changes in pauci-symptomatic CADASIL patients and sex- and age-matched healthy controls.

MRI data were acquired on a Siemens 3T Verio scanner with a 32-channel head coil. High-resolution anatomical images were obtained using a 1 mm isotropic MP-RAGE sequence. Functional data were collected with a standard 2D GRE-EPI sequence optimized for high temporal resolution (TR=300 ms, TE=30ms, flip-angle=38°; 12 slices, 3 mm isotropic voxels, MultiBand=3), enabling fine sampling of the hemodynamic response without temporal interpolation. We included 18 CADASIL patients (age range: 32-72 years, mean: 51 years) and 16 healthy controls (age range: 35-71 years, mean: 52). The evoked BOLD MRI data protocol consisted of a flickering checkerboard lasting 2 sec or 10 sec (40 and 4 repetitions, respectively, Fig.1.A). Using BrainVISA Morphologist on the anatomical scan, we generated and manually corrected the CS to exclude the pericalcarine sulcus from the ROI. Functional parameters were derived from the mean BOLD responses ([2] and ESMRMB abstract #53353). Morphological parameters (Fig. 1C) were extracted using the BrainVISA Morphologist [6], with data averaged from the left and right calcarine sulci. We also evaluated the grey matter (GM) thickness and the isomap shape descriptor. Correlations have been assessed with the Pearson test.

In a previous study (see [2] and ESMRMB abstract #53353), functional parameters catching the BOLD response dynamics in the calcarine sulcus efficiently discriminated CADASIL patients from healthy controls [2]. In contrast to control subjects, CADASIL patients showed abnormal CS shape (Fig.1D). Morphological parameters of the calcarine sulcus, comprising isomaps analysis (Fig.1E), significantly discriminated CADASIL patients from healthy controls (Fig.1F). Structure-function correlations between sulcal morphological and functional parameters did not reveal significant associations in healthy subjects, nor in CADASIL. However, we found that a higher AUC ratio (i.e. a slower BOLD response) in CADASIL correlated with a decreasing geodesic depth (Fig.2A). Interestingly, progressive GM thinning was significantly correlated with an increased time to peak latency to 10-second stimuli (Fig.2B). It is known that CADASIL patients also display multiple white matter hyperintensities (WMHs; Fig. 3A), as we confirmed by WMH scoring, measured by an expert neurologist (H.C.), not lower than 3 according to the Fazekas scale. WMHs were almost absent in control subjects. WMHs correlated with Extremity1z (Fg.3B). Extremity 1z also correlated with age, in CADASIL, which is naturally related to diseases worsening (Fig.3C).

This is the first study comparing functional and morphological cortical aspects in SVDs, namely CADASIL, leveraging fast BOLD fMRI at 300ms TR and precise sulci reconstruction with AI-guided tools available in Brain VISA Morphologist. The calcarine sulcus shows both functional and morphological alterations in CADASIL. In most cases, functional and sulcal morphological parameters seem to follow independent pathways in CADASIL. However, more sophisticated analyses should be conducted to account for CADASIL features, such as sulcal interruption and high tortuosity, that probably fall at the border of Morphologist training dataset. If a refined analysis confirms the independence of functional and sulcal morphological defects in CADASIL, those parameters may form a basis for multimodal biomarker for SVDs. Instead, the significant relationship between the BOLD response slowdown and cortical thickness in patients may reflect neuronal apoptosis and secondary cortical tissue loss occurring in CADASIL [7,8], or be related to differences in cortical development. Further examination of symptomatic CADASIL patients will help better understand the morphological and functional relationship and get insights into the underlying pathological mechanisms.

Multi-MRI assessment of the calcarine sulcus, combining fast BOLD fMRI-derived parameters and T1-based morphological descriptors, revealed a non-trivial relationship between BOLD dynamics and some cortex morphological features in CADASIL, opening new avenues for clinical investigation in SVDs.
Valentine PEREZ (Paris) , Zhong Yi SUN , Camélia RESSAM , Benoît BÉRANGER , Jessica LEBENBERG , Clara FISCHER , Ophélie FOUBET , Ali-Kémal AYDIN , Denis RIVIÈRE , Jean-François MANGIN , Serge CHARPAK , Hugues CHABRIAT , Davide BOIDO
16:15 - 17:00 #54189 - P381 Improving Whole-Brain In Vivo Angiography and Quantitative MRI at 7T Using Thin Flexible Artificial Dielectric–Based Metamaterials.
P381 Improving Whole-Brain In Vivo Angiography and Quantitative MRI at 7T Using Thin Flexible Artificial Dielectric–Based Metamaterials.

Ultra-high-field MRI (≥7T) enables high-resolution structural, vascular, and quantitative imaging, but suffers from RF field inhomogeneity and signal loss, particularly in inferior brain regions. While dielectric pads and metamaterials can improve transmit efficiency and signal-to-noise ratio (SNR)1–4, conventional dielectric pads are bulky and lossy, and many metamaterial designs rely on lumped capacitors. Here we present a thin flexible artificial dielectric (AD) platform for local RF enhancement at 3T and 7T MRI. The structure consists of shifted multilayer conducting patterns on ultra-thin dielectric substrates, providing effective permittivity close to εr≈100 with total thickness below 200 μm. A modular hybrid configuration combining the AD with interchangeable conducting-strip arrays was also investigated, enabling tunable electromagnetic behavior for different anatomies, applications, and field strengths. The proposed setups were evaluated in phantom (3T and 7T) and in vivo 7T MRI experiments, including angiography, T2-weighted SPACE imaging, and quantitative T2* mapping using multi-echo GRE.

The artificial dielectric (AD) consisted of conducting triangular patches arranged in shifted hexagonal patterns on flexible dielectric substrates5. Neighboring rows were shifted in-plane by half a cycle to increase capacitive coupling and effective permittivity. The implemented AD thickness was 170 μm.. Hybrid metamaterial configurations (MM) were created by combining the AD with conducting-strip arrays separated by a dielectric layer (Fig. 1). Long strips (~16 cm) were tuned to support electric dipole resonances near the 7T proton Larmor frequency, providing enhancement comparable to εr≈280, while shorter strips (8 cm) produced enhancement comparable to εr≈150. Phantom experiments were performed at 7T (Terra, Siemens) and 3T (Prisma, Siemens) MRI to evaluate B1+ enhancement. A rectangular sucrose/agarose phantom (εᵣ≈56, σ=0.3 S/m) was used at 7T, and a standard Siemens cylindrical phantom was used at 3T. Human imaging experiments were conducted at 7T MRI with the non-resonant structures (AD and the shorter-strip hybrid setup) positioned at the back of the head. Acquisitions included: • B1+ mapping, using the vendor-provided sequence with resolution of 2.5 × 2.5 × 3.5 mm³ • non-contrast-enhanced TOF angiography with resolution 0.3x0.3x0.3 mm3, 2 slabs, TR/TE 27/5.61 ms, duration 6:44 minutes. • 3D T2-weighted SPACE imaging with isotropic resolution 0.67 mm , TR/TE = 4500/118 ms, acceleration factor x6, duration 7:21 min. • multi-echo GRE for quantitative T2* mapping with resolution 0.75 × 0.75 × 0.8 mm3, acceleration factor x2, TR = 2.8 s, five echo times TE=6.44ms, ΔTE=3.3 ms and flip angle = 55°.

Fig. 1 shows phantom GRE maps and 1D cross-sections demonstrating the enhancement achieved with different setups. Approximating the signal increase as proportional to (B1+)², the estimated B1+ enhancement at 7T was 10%, 22%, and 70% for the AD, short-strip MM, and long-strip MM configurations, respectively. At 3T MRI, the long-strip MM produced approximately 50% local B1+ enhancement. In vivo B1+ mapping at 7T demonstrated localized enhancement in the posterior brain. AD increased local B1+ by approximately 20%, while short-strip MM achieved enhancement approaching 50% (Fig.3A). TOF angiography showed improved posterior vessel visualization, with ~2-fold signal increase in large vessels and improved detection of smaller vessels (Fig.3B). T2-weighted SPACE imaging demonstrated ~2.5-fold cerebellar signal enhancement (Fig.3C). Multi-echo GRE showed 1.5–2-fold signal increase, particularly at longer echo times (Fig.4), improving quantitative T2* fitting reliability with ~1.4-fold more voxels exhibiting fitting error below 10%.

The proposed thin flexible artificial dielectric structures provide substantial local RF enhancement while remaining lightweight, mechanically conformable, and below 1 mm total thickness. Unlike many previous metamaterial designs, the presented approach avoids lumped capacitive elements and enables modular reconfiguration through interchangeable strip arrays. The strongest improvements were observed in inferior brain regions that typically suffer from poor transmit efficiency at 7T MRI. The enhanced B1+ translated directly into improved angiography, T2-weighted imaging, and quantitative T2* mapping. TOF angiography demonstrated improved conspicuity of both large and small vessels, while the strong enhancement in T2-weighted SPACE imaging highlights the benefit for sequences dependent on refocusing efficiency. Improved T2* fitting reliability further demonstrates the potential of patient-adaptable RF enhancement for ultra-high-field MRI.
Santosh Kumar MAURYA (TelAviv, Israel) , Rita SCHMIDT
16:15 - 17:00 #54714 - P382 MRI Analysis Along the Perivascular Space (ALPS) Index in Pediatric Mild Traumatic Brain Injury.
P382 MRI Analysis Along the Perivascular Space (ALPS) Index in Pediatric Mild Traumatic Brain Injury.

Mild traumatic brain injury (mTBI) is a common neurological condition in children and adolescents and may lead to persistent cognitive, behavioral, and emotional symptoms despite normal conventional neuroimaging findings. Recent studies suggest that subtle microstructural and physiological alterations may contribute to these post-concussive symptoms. The glymphatic system, a brain-wide perivascular clearance pathway, plays an important role in maintaining cerebral homeostasis and removing metabolic waste. MRI analysis along the perivascular space (MRI-ALPS) is a diffusion tensor imaging (DTI)-based method used to indirectly assess glymphatic function. Although ALPS index alterations have been reported in several adult neurological disorders, data in pediatric mTBI remain limited. Evaluating glymphatic function in pediatric mTBI may provide further insight into injury mechanisms and recovery processes.

This retrospective case-control study was conducted at the Clinical and Research Institute of Emergency Pediatric Surgery and Traumatology (CRIEPST), Moscow. Seventeen participants (11 males, 6 females) were included. The mTBI group consisted of 14 patients (10 males, 4 females; mean age 16 ± 2 years) diagnosed clinically after neurological examination. All patients had a Glasgow Coma Scale (GCS) score of 15. Common symptoms included headache, weakness, drowsiness, vertigo, vomiting, coordination difficulties, and impaired Romberg test performance. Age-matched healthy controls were also included. MRI examinations were performed using a Philips Achieva dStream 3.0-T scanner with a 32-channel head coil. The imaging protocol included T1-weighted, T2-weighted, FLAIR, SWI, and diffusion tensor imaging sequences. No structural abnormalities were identified on conventional MRI. Diffusion data were acquired using spin-echo echo-planar imaging with 32 diffusion directions (TR = 3700 ms, TE = 85 ms, voxel size 2 × 2 × 2 mm, b values = 0 and 800 s/mm²). Regions of interest were automatically placed in projection and association fiber regions adjacent to the lateral ventricles using a previously published ALPS processing pipeline based on MRtrix3 and FSL tools[1] (github.com/gbarisano/alps). ALPS indices were calculated according to the method described by Taoka et al[2]. Statistical analysis was performed using the SciPy package in Python. Continuous variables were expressed as mean ± standard deviation or median with interquartile range as appropriate. Group comparisons were performed using Welch’s t-test, with p < 0.05 considered statistically significant.

It is anticipated that pediatric mTBI patients showed no difference of ALPS indices compared with healthy controls (mean±std ALPS index healthy controls: 1.48±0.15 (N = 14), mTBI: 1.46±0.19 (N = 17); p = 0.67).

Obtained findings suggest that glymphatic function may remain preserved after pediatric mTBI or that ALPS analysis may not detect subtle post-traumatic alterations in this population. Previous adult studies have reported glymphatic dysfunction after traumatic brain injury[3, 4], but pediatric data remain limited. In study of Castro et al.[5] it was not found difference in healthy group and adolescents with sport-related concussion. The study is limited by small sample size and the indirect nature of ALPS assessment. Larger longitudinal studies are needed to clarify the role of glymphatic dysfunction in pediatric mTBI.

No significant difference in ALPS indices was observed between pediatric mTBI patients and healthy controls. MRI-ALPS may have limited sensitivity for detecting subtle glymphatic alterations in mild pediatric brain injury. Further studies with larger cohorts and standardized imaging protocols are required to determine the clinical value of ALPS analysis in pediatric traumatic brain injury.
Alexey YAKOVLEV (Moscow, Russia) , Olga BOZHKO , Maxim UBLINSKIY , Tolibjon AKHADOV
16:15 - 17:00 #54265 - P383 Serum GFAP reflects clinical severity and structural brain changes in Progressive supranuclear palsy.
P383 Serum GFAP reflects clinical severity and structural brain changes in Progressive supranuclear palsy.

Progressive supranuclear palsy (PSP) is a rare and rapidly progressive neurodegenerative disorder classified as a primary 4R-tauopathy and characterized by postural instability, vertical gaze palsy, cognitive decline, and severe motor impairment [1-2]. Although neuroimaging and fluid biomarkers are increasingly used to investigate PSP pathophysiology, reliable and minimally invasive biomarkers reflecting disease severity and neurodegenerative burden are still lacking. Glial fibrillary acidic protein (GFAP), a marker of astrocytic activation and neuroinflammation, has emerged as a promising blood biomarker in several neurodegenerative diseases, particularly Alzheimer’s disease, where it is strongly associated with amyloid pathology [3-4]. However, its biological and clinical significance in primary tauopathies such as PSP remains poorly understood. The present study aimed to investigate the association between serum GFAP levels, clinical severity, structural MRI changes, and amyloid-related biomarker levels in patients with PSP.

Twenty-nine patients fulfilling the Movement Disorder Society diagnostic criteria for PSP and nineteen healthy controls (HC) were enrolled. All participants underwent neurological examination and blood collection, while twenty-five PSP patients additionally underwent 3T brain MRI. Structural MRI data were processed using FreeSurfer version 7.4.1 to obtain total brain volume, brainstem substructure volumes, and white matter lesion (WML) load. Serum GFAP and phosphorylated tau 217 (ptau217) concentrations were quantified using ultrasensitive single molecule array (SIMOA) assays on the Quanterix HD-X platform. Associations between GFAP and clinical, imaging, or fluid biomarker variables were assessed using linear regression models adjusted for age at blood collection, with false discovery rate correction for multiple comparisons. Finally, unsupervised k-means clustering was applied to standardized GFAP and ptau217 values to identify PSP subgroups based on biomarker profiles.

PSP patients showed significantly higher serum GFAP levels compared with HC after adjustment for age and sex, whereas serum ptau217 concentrations did not significantly differ between groups. In PSP patients, higher GFAP concentrations were significantly associated with greater clinical severity. Specifically, GFAP correlated with the PSPRS total score and with several PSPRS subdomains, including mentation, bulbar function, ocular function, and limb motor impairment. MRI analyses demonstrated that elevated GFAP levels were associated with reduced volumes of brainstem structures characteristically affected in PSP. In particular, serum GFAP inversely correlated with superior cerebellar peduncle volume and midbrain volume, indicating that higher astrocytic activation was linked to more severe regional neurodegeneration. Conversely, no significant associations were found between GFAP and total brain volume or WML load, suggesting that GFAP reflects PSP-specific neurodegenerative changes rather than unspecific global atrophy or cerebrovascular burden. Importantly, no association was observed between serum GFAP and ptau217 levels, indicating that astrocytic activation in PSP may occur independently of amyloid-related pathological processes. To further explore this relationship, unsupervised cluster analysis identified three distinct PSP subgroups.

The present findings support the hypothesis that astroglial activation plays a relevant role in PSP pathophysiology and that serum GFAP may reflect ongoing neurodegenerative processes in this primary tauopathy. The observed association between GFAP and PSPRS scores suggests that astrocytic reactivity is linked to overall disease burden, involving both motor and cognitive domains. Moreover, the relationship between GFAP levels and atrophy of the midbrain and superior cerebellar peduncle further strengthens the biological relevance of this biomarker, since these structures are characteristically involved in PSP [5-6]. Finally, the lack of correlation between GFAP and ptau217, together with the identification of distinct biomarker-based PSP clusters, indicates that elevated GFAP levels are unlikely to be explained by concomitant Alzheimer’s disease pathology and may instead represent a distinct astroglial response associated with PSP neurodegeneration.

This study demonstrates that serum GFAP is elevated in PSP and is significantly associated with both clinical severity and structural damage of disease-specific brainstem regions. The lack of association with ptau217 suggests that GFAP increase in PSP is independent of amyloid co-pathology and likely reflects astroglial activation related to PSP neurodegeneration itself. Given its minimally invasive nature and association with disease burden, GFAP may represent a promising biomarker for patient stratification, monitoring of disease progression, and future therapeutic studies.
Camilla CALOMINO (Catanzaro, Italy) , Maria Giovanna BIANCO , Andrea QUATTRONE
16:15 - 17:00 #54613 - P384 Estimation of SV2A PET-Derived Synaptic Density from Quantitative MRI Using Data-Driven Methods.
P384 Estimation of SV2A PET-Derived Synaptic Density from Quantitative MRI Using Data-Driven Methods.

Synaptic density is a key biomarker for neurodegeneration, particularly in Alzheimer’s disease. Positron Emission Tomography (PET) with SV2A radioligands such as [18F]UCB-H enables in vivo quantification of synaptic density [1,2], however, PET remains limited by radiation exposure and scalability. Quantitative MRI (qMRI), which probes tissue microstructure through parameters such as R1, R2*, MTsat, and proton density (PD), offers a non-invasive alternative. This study investigates whether qMRI maps can be combined to estimate PET-derived synaptic density using data-driven approaches.

Two multimodal qMRI-PET datasets (n = 74), including Alzheimer’s disease, subjective cognitive decline, and healthy controls cohorts, were combined. Synaptic density was estimated from dynamic [18F]UCB-H PET data using Logan graphical analysis to derive distribution volume (VT), reflecting SV2A binding [3]. To reduce inter-dataset variability, harmonization was performed using the ComBat method [4]. All images were spatially normalized to MNI space for voxel-wise analysis (Fig 1). qMRI maps were standardized using subject-wise z-scores, while PET images were normalized using cerebellar uptake [6], followed by global z-scoring. Classical machine learning models [7] (Support Vector Regression (SVR), Partial Least Squares (PLS), Elastic Net and Random Forests) were evaluated using both voxel-wise and region-of-interest (ROI) approaches based on the Schaefer 2018 atlas [8]. Data were split at the subject level into training (70%), validation (15%), and test (15%) sets to prevent data leakage. Deep learning models were implemented using TensorFlow/Keras package [9], including U-Net, ResUNet++, and Pix2Pix-like conditional Generative Adversarial Networks (GANs) [10-12]. Models were trained on multi-channel qMRI inputs in 2D, 2.5D (adjacent slices as channels), and 3D configurations. Additional experiments incorporated Schaefer atlas as a structural prior. Training used Mean Squared Error and structural similarity-based losses. Performance was evaluated using MSE, SSIM, PSNR, and Pearson correlation [13-16].

Classical models achieved moderate performance, with Elastic Net providing the best results (R² = 0.50, RMSE = 0.448, MAE = 0.331). Deep learning models improved prediction accuracy, with 3D U-Net architectures yielding the most consistent performance (Fig 2). Training curves indicated overfitting, with validation loss plateauing after approximately 50 epochs. Evaluation restricted to gray matter regions (z-score normalized data) showed strong agreement between predicted and reference PET images (Fig 3) with mean MSE of 0.1294 (± 0.0778), SSIM of 0.9832 (± 0.0097), PSNR of 23.56 dB (± 1.82), and Pearson correlation of 0.8838 (± 0.0725).

Deep learning models outperformed classical approaches, highlighting their ability to capture complex nonlinear relationships between qMRI and PET-derived synaptic density. In this limited dataset, the observed overfitting likely reflect the sample size relative to model complexity. Despite this, the ability of deep learning models to reconstruct PET-like images with high structural similarity indicates that qMRI-derived parameters contain relevant information related to synaptic organization, albeit indirectly. These findings support the hypothesis that qMRI encodes meaningful microstructural correlates of synaptic density. Nevertheless, these results should be interpreted in light of the dataset size and variability across acquisition settings. Improving generalization and robustness will likely require more diverse training data, stronger regularization strategies, and systematic evaluation across independent datasets when available.

This study demonstrates the feasibility of predicting PET-derived synaptic density from qMRI using data-driven methods, supporting the development of non-invasive and scalable alternatives to PET imaging. Future work should also address limitations related to PET normalization, including reducing reliance on cerebellar reference regions or mitigating associated biases.
Axel RUYMAEKERS , François MEYER , Jiqing HUANG , Antoine JACQUEMIN , Solène DAUBY , Eric SALMON , Christine BASTIN , Christophe PHILLIPS , Mikhail ZUBKOV (Liege, Belgium) , Mohamed Ali BAHRI
16:15 - 17:00 #54333 - P385 Reproducibility of brain morphometry measurements across different head coils and acceleration factors on a PET/MR scanner.
P385 Reproducibility of brain morphometry measurements across different head coils and acceleration factors on a PET/MR scanner.

Brain morphometry is a powerful magnetic resonance imaging (MRI) technique widely used to quantify cortical thickness (Cth) and subcortical volumes (SCV) from T1-weighted (T1-w) MPRAGE sequences [1]. These metrics are increasingly adopted as imaging biomarkers in longitudinal and multicenter studies. However, MRI systems frequently undergo major hardware and software upgrades during their lifecycle, including the introduction of higher-channel receiver coils and different parallel imaging acceleration factors, potentially affecting the reproducibility and longitudinal consistency of morphometric measurements [2]. In integrated PET/MR systems, where PET-transparent coils are required, the impact of scanner upgrades and acquisition changes on morphometric reliability remains poorly investigated. The aim of this study was therefore to evaluate the reproducibility of brain morphometry measurements acquired before and after a major PET/MR hardware upgrade involving increased different PET-transparent head coils (16-ch and 32-ch), and different acceleration factors (p2 and p4).

Fifteen healthy subjects (13 females; age 26.3 ± 2.7 years) underwent repeated scans on a 3T PET/MR scanner (Biograph mMR, Siemens Healthineers AG, Forchheim Germany). Each participant underwent three T1-w MPRAGE acquisitions following the Alzheimer’s Disease Neuroimaging Initiative (ADNI) protocol [3]: one acquisition before the scanner upgrade using a 16-ch PET-transparent head/neck coil with acceleration factor 2 (p2), and two acquisitions after the upgrade using a 32-ch PET-transparent head coil with acceleration factors p2 and p4 (Figure 1). Images were processed using FreeSurfer v7.3.2 for automated cortical and subcortical segmentation. CTh was evaluated according to the Desikan-Killiany atlas [4] and grouped into major lobar regions, while SCV measurements included the accumbens, amygdala, caudate, hippocampus, pallidum, putamen, and thalamus. Agreement and reproducibility across acquisition protocols was assessed using Pearson’s correlation coefficients, test-retest variability5 (TRV) and intraclass correlation coefficients (ICC) based on a two-way random-effects model with absolute agreement. Gray matter/white matter (GM/WM) signal intensity ratios were compared using Friedman and Wilcoxon signed-rank tests with Bonferroni correction.

Morphometric measurements obtained before and after the hardware upgrade showed very high correlations across all acquisition conditions (Figure 2), with Pearson’s coefficients ranging from 0.96 to 1.00 (p < 0.001). ICC analysis confirmed good-to-excellent reproducibility for most cortical and subcortical measurements. CTh showed the highest stability, with median TRV values generally below 4% and ICC values ranging from 0.61 to 0.94. SCV measurements demonstrated a structure-dependent variability pattern (Figure 3), with larger structures such as the caudate, putamen, and thalamus showing excellent reproducibility (ICC up to 0.99), whereas smaller structures, particularly the accumbens (TRV = 7.9%), were more sensitive to acquisition-related changes, especially in cross-coil comparisons. Images acquired after the hardware upgrade with the 32-ch coil showed significantly higher GM/WM ratios compared with the 16-ch coil (p < 0.05), consistent with the improved tissue contrast and higher signal-to-noise ratio (SNR). No significant differences were observed between p2 and p4 acquisitions performed with the same 32-ch coil (Figure 4), indicating that accelerated acquisitions maintained quantitative consistency despite reduced scan time.

These findings demonstrate that brain morphometry measurements obtained on PET/MR systems remain highly reproducible even after hardware upgrades and acquisition changes. CTh proved particularly robust, while SCV were more sensitive to protocol-related variability, especially in smaller structures as accumbens. Importantly, the use of higher-ch density transparent coils improved image quality without compromising morphometric consistency, and acceleration factor p4 enabled shorter acquisitions while preserving quantitative reliability.

Overall, these results support the longitudinal stability of brain morphometry metrics across PET/MR scanner upgrades and highlight their suitability for longitudinal and multicenter neuroimaging studies, provided that acquisition-related variability is carefully considered when interpreting subtle structural changes.
Maria Celeste BONACCI (Catanzaro, Italy) , Domenico ZACÀ , Ilaria CHIMENTO , Alisea SACILOTTI , Andrea QUATTRONE , Umberto SABATINI , Aldo QUATTRONE , Maria Eugenia CALIGIURI
16:15 - 17:00 #54612 - P386 From MP2RAGE to EDGE and FLAWS in Focal Cortical Dysplasia and healthy volunteers at 3T and 9.4T.
P386 From MP2RAGE to EDGE and FLAWS in Focal Cortical Dysplasia and healthy volunteers at 3T and 9.4T.

Edge-enhancing gradient echo (EDGE) and Fluid And White matter Suppression (FLAWS) can be used for detection of cortical dysplasia (FCD) but require specific imaging techniques [1–3]. We investigated if MP2RAGE and quantitative T1 (qT1) are versatile enough to identify the border between white (WM) and grey (GM) matter by using EDGE and FLAWS images derived from qT1 maps. The contrasts were compared with a region identified from tissue probability maps attributed to a sub-population of Meynert’s U-fibres (termed ‘Fibrae Propriae’ in analogy), located within a 1.5mm thick sheet subtending the cortex, expected to contain very short (3-30mm) cortico-cortical connections [4,5].

MP2RAGE with 0.8mm isotropic voxels at 3T (TI1/TI2=700/2500ms; FA=4/5°; TR=7.7ms/5s; TE=3.16ms) and 9.4T (TI1/TI2=900/3500ms; FA=4/6°; TR=6ms/9s; TE=2.3) were acquired in 9 healthy subjects and 2 FCD patients [6,7]. At 3T, scanner reconstruction and at 9.4T, flip-angle corrected offline reco was performed for qT1 mapping. T1w contrast images at 9.4T were derived from: y=1-2∙e^(-TI/qT1) . Through visual inspection, TI=1200 was judged optimal for EDGE in FCD at 9.4T while TI=700 was used at 3T. For FLAWS, the measured qT1 in WM and CSF were used to optimize the inversion times [2]. Tissue probability maps from CAT12 (version 12.9, in Matlab R2018b) were used to define Fibrae Propria (FibP) as voxels with GM-probability<0.5 and WM-probability <0.98. qT1 were extracted from GM, WM, CSF with probability>0.98 and from FibP.

The TI1 of the acquired MP2RAGE images yielded a dark appearance of the WM/GM-border at 3T, but at 9.4T the band was less clearly recognizable (Fig 1). From qT1 at 9.4T, EDGE images derived with TI=1200 were similar to the acquired TI1 and the derived TI=600ms at 3T. With FLAWS, hyperintensity due to prolonged T1 within the white matter became conspicuous in FCD (Fig1). FibP was defined from tissue probability maps and found to be located within the dark EDGE regions, juxtaposed with the hyperintense GM region in FLAWS (Fig2). It comprised voxels with both GM and WM inversion polarity. FibP could be defined at both field strengths using the same settings in CAT12. The T1 times in healthy controls were significantly different between tissue types and magnetidc field strengths (Fig 3). The IR behaviour and selected inversion times explained the differences in TI1 contrast observed in the images acquired at 3T and 9.4T in FCD and healthy subjects.

Direct observation of the GM-WM tissue border requires tuning of TI at different B0 field strengths, which is simplified through MP2RAGE, qT1 and derived MRI. EDGE and FLAWS benefit from improved resolution and signal at high fields and show potential for clinical practice in FCD. In healthy subjects, EDGE and FLAWS corresponded to the FibP region. However, partial volume effects from multiple sources within this region, such as myelin, iron, and white matter interstitial neurons, can have an influence on the MRI signal behaviour [8–11], which could be addressed by quantification of other qMRI parameters and the use of ex vivo MRI in future studies.

Besides tissue segmentation, MP2RAGE can be used to derive EDGE and FLAWS images from qT1 maps. Such imaging approaches could substantially improve MRI quality at clinical and ultra-high magnetic fields, but signal interpretation requires consideration of several contributing signal sources.
Gisela E HAGBERG (Tübingen, Germany) , Cornelius KRONLAGE , Pascal MARTIN , Benjamin BENDER , Jonas BAUSE , Klaus SCHEFFLER
16:15 - 17:00 #54619 - P387 Development of a novel method for T1 mapping in the brain using multiple MP2RAGE acquisitions.
P387 Development of a novel method for T1 mapping in the brain using multiple MP2RAGE acquisitions.

Quantitative T1 mapping using MP2RAGE [1] has emerged as a valuable tool for assessing brain maturation and myelination in infants and young children, providing robust measurements of white and gray matter development [2]. However, standard MP2RAGE protocols are primarily optimized for tissue contrast and segmentation, often providing limited sensitivity to long-T1 components such as cerebrospinal fluid (CSF), whose accurate quantification remains challenging because of partial volume effects and the ultra-long T1 relaxation of CSF. Recent studies have further suggested that CSF T1 measurements may provide indirect information on brain–CSF water exchange and fluid clearance mechanisms involved in brain homeostasis and glymphatic transport [3]. In this work, we investigate a multi-acquisition MP2RAGE approach combining different inversion-time settings through a sensitivity-weighted strategy, aiming to improve quantitative T1 estimation across the full physiological range, with particular emphasis on CSF characterization in the pediatric brain [2].

We analyzed data acquired as part of the previous FLEX study (Fandakova et al.) on a large cohort of healthy 6-year-old children, with local ethical approval. All MRI data were acquired on a Siemens Healthineers 3T Trio system using a 32-channel head coil. The protocol included three MP2RAGE acquisitions with identical geometry (FOV = 230 mm, isotropic resolution = 1 mm³, TA ≈ 8 min) but different inversion times: MP2RAGE A [488, 1750 ms], MP2RAGE B [800, 2500 ms], and MP2RAGE C [1200, 3450 ms]. The corresponding MP2RAGE signal vs T1 functions were simulated according to Marques et al. [1] (Fig. 1). Because each MP2RAGE acquisition exhibits different sensitivity across the T1 range, we implemented an adaptive sensitivity-weighted combination strategy based on the derivative of the MP2RAGE signal curve (Fig. 2). Weighting functions were constrained to the monotonic regime of the MP2RAGE signal evolution to avoid ambiguities associated with non-injective T1 encoding at long relaxation times. Voxelwise weighting maps were generated from a reference T1 map (standard protocol) and applied to each individual T1 map, producing weighted T1 maps for acquisitions A, B, and C (Fig. 3). The weighted maps were subsequently combined into a final composite T1 map (Fig. 4). Results were compared against both a simple arithmetic average of the three MP2RAGE acquisitions and the standard MP2RAGE protocol (MP2RAGE [800 2500] in Fig. 3 B1).

In a single subject, the proposed combined T1 map provided more robust T1 estimation across the full physiological range, particularly for long-T1 compartments such as cerebrospinal fluid (CSF). Compared with the standard MP2RAGE protocol (Fig. 3B1), the proposed method demonstrated substantial differences in CSF T1 values while maintaining good agreement in gray and white matter regions (Fig. 4). Similarly, comparison with a simple arithmetic average of the three T1 maps revealed marked differences in CSF estimation, supporting the improved sensitivity and robustness of the adaptive weighting approach for long-T1 tissues.

This dedicated approach was developed to replace conventional MPRAGE imaging for tissue segmentation, improving robustness and contrast in the developing brain at the expense of additional scanning time. Our derivative–based weighting approach demonstrate potentials to improve the characterization of the T1 in the CSF compartments in the brain. A statistical analysis over the full sample is ongoing aiming to develop a robust method to investigate intra subjects variability at the different time points.

This method of analyzed previous acquired data confirms that in order to quantify long T1 values in tissues such as CSF it may be necessary to combine different MP2RAGE acquisitions with inversion times longer than those used in standard protocols optimized for grey and white matter contrast.
Valentina MORUZZI (Berlin, Germany) , Sina A. SCHWARZE , Yana FANDAKOVA , Christoph S. AIGNER , Benedikt POSER
16:15 - 17:00 #54268 - P388 Can MRI radiomics predict focused ultrasound treatment outcome in essential tremor?
P388 Can MRI radiomics predict focused ultrasound treatment outcome in essential tremor?

Essential tremor (ET) is among the most prevalent movement disorders and a major cause of functional disability [1–3]. MR-guided focused ultrasound (MRgFUS) thalamotomy achieves substantial tremor relief through noninvasive thermal ablation of the ventral intermediate (VIM) nucleus [4, 5]. However, tremor recurrence affects approximately 11–14% of patients within the first months after treatment [6, 7]. Currently, there are no validated pre-treatment imaging signatures to guide patient selection or predict long-term outcomes. In patients with ET, routine clinical MRI typically shows no specific structural abnormalities prior to treatment. Radiomics, a quantitative image-analysis method, extracts intensity, shape, and texture features from medical imaging and has been proposed for predicting clinical outcomes [8]. Here, we applied this approach to predefined regions of interest (ROIs) along the cerebello-thalamo-cortical pathway [9] to evaluate whether pre-treatment MRI radiomic features carry predictive value for long-term MRgFUS outcome.

This retrospective study included 156 adults with medication-refractory ET who underwent unilateral VIM MRgFUS thalamotomy at Rambam Medical Center (Haifa, Israel; 2013–2025). Tremor severity was assessed using the Clinical Rating Scale for Tremor (CRST) at baseline, day 7, and months 1, 3, 6, and 12. Two outcome groups were defined based on treated-hand scores: recurrence (N=37; >33% loss of suppression at 3 months relative to day 7 [6], or >5-point treated side CRST increase within one year [7]) and sustained response (N=29; maximum score of 1 at 12 months). Pre-treatment T1-weighted MRI was acquired on a 3.0T GE Discovery MR750 (axial 3D BRAVO; typical parameters: TR/TE/TI=8.2/3.2/450 ms, flip angle=12°, matrix=256×192, FOV=220×220 mm², voxel=0.9×1.1×1.2 mm³). Preprocessing included brain extraction, bias-field correction, 1.0 mm isotropic resampling, and z-score normalization. Twelve anatomical ROIs were defined using atlas-based registration (precentral gyrus, SMA, thalamus, cerebellum, and ventricles). Radiomic features were extracted using PyRadiomics [10] from original and LoG-filtered (σ=1.5 mm) images (Fig. 1). Elastic net logistic regression was trained using repeated nested cross-validation. To assess the added predictive value of radiomics beyond clinical variables (baseline tremor, skull density ratio, age, gender), three models were compared in a leave-one-patient-out cross-validation framework: clinical-only (Model A), radiomics-clinical (Model B), and radiomics-only (Model C). Within each fold, the top three most informative radiomic features were selected via Mann-Whitney U ranking and Spearman deduplication (|r|>0.8). Model discrimination was estimated by Area Under the Curve (AUC), and pairwise differences were assessed using a paired swap permutation test, with results confirmed by the DeLong test [11].

Of 156 patients, 66 were identified in the sustained response (N=29) and recurrence (N=37) groups. Feature stability analysis identified consistent radiomic features predominantly from the precentral gyrus and cerebellum (Fig. 2). We then assessed the added predictive value of radiomic features beyond clinical variables. All p-values reflect comparisons against Model A. Both Model B and Model C significantly outperformed Model A (AUC-A=0.5; Fig. 3a) across all ROIs combined (AUC-B=0.68, p=0.011; AUC-C=0.73, p=0.007) (Fig. 3b). Similar results were obtained for ROI-specific features from the cerebellum (AUC-B=0.72, p=0.003; AUC-C=0.72, p=0.026) (Fig. 3c) and the precentral gyrus (AUC-B=0.67, p=0.009; AUC-C=0.75, p=0.002) (Fig. 3d). Interestingly, a lateralization effect was observed for the precentral gyrus, where ipsilateral features (relative to the treated thalamus) showed significant predictive value (AUC-B=0.65, p=0.015; AUC-C=0.74, p=0.009), whereas contralateral features did not (p=0.46, p=0.35 for Models B and C, respectively). In contrast, the SMA, ventricular, and thalamic ROIs showed no evidence of improvement over the clinical model (all p>0.05).

These findings indicate that MRI-based indicators of treatment durability are distributed across the broader tremor network, rather than at the ablation target alone [12]. The ipsilateral precentral gyrus lateralization effect suggests pre-existing structural vulnerability in that region. Together with the absence of predictive value in thalamic ROIs, our findings highlight the importance of anatomically motivated ROI selection.

Routine pre-treatment structural MRI carries prognostic information beyond clinical parameters, with radiomic features from the precentral gyrus and cerebellum predicting long-term MRgFUS outcome. These findings provide proof of concept for imaging-based decision support in patient selection prior to MRgFUS thalamotomy, potentially reducing unnecessary procedures and patient risk.
Nitsan BAR LEV* (Ramat Gan, Israel) , Mark KATSON* , Keren MIRON , Ilana SCHLESINGER , Libby BRANTS , Ayelet ERAN , Shahar SHELLY+ , Yaara EREZ+
16:15 - 17:00 #54401 - P389 Contrast ratio assessment of the Substantia Niga in Neuromelanin-Sensitive MRI using TSE and MT-GRE sequences.
P389 Contrast ratio assessment of the Substantia Niga in Neuromelanin-Sensitive MRI using TSE and MT-GRE sequences.

Neuromelanin-sensitive MRI (NM-MRI) provides a non-invasive biomarker of dopaminergic neuron integrity within the substantia nigra (SN) [1–4]. Two commonly used NM-MRI sequences are magnetization transfer gradient echo (MT-GRE) and T1-weighted turbo spin echo (TSE) [5,6]. The MT-GRE sequence is sensitive to neuromelanin (NM) via explicit magnetization transfer (MT) effects, using an off-resonance pre-pulse to enhance NM visibility [5]. In contrast, NM contrast in TSE sequences relies on a combination of T1 shortening and implicit MT effects, which could be less sensitive than MT-GRE but are easier to implement and harmonise due to the absence of an off-resonance pre-pulse [3,6,7]. Here, we propose a framework to quantitatively compare NM contrast ratios between sequences in healthy volunteers, with the primary aim of evaluating contrast sensitivity and identifying the acquisition that provides more reliable neuromelanin signal quantification. Our proposed framework ensures reproducible extraction of signal metrics and robust comparison between TSE and MT-GRE acquisitions.

Data acquisition: Three healthy participants were scanned on a 3T GE SIGNA Premier MRI system using a 48-channel head coil, with two neuromelanin-sensitive sequences, two-dimensional (2D) MT-GRE and 2D TSE, acquired in an oblique axial plane. Sequences were matched in key acquisition parameters, including in-plane spatial resolution (0.687×0.687mm²), matrix size (320×320), phase FOV (75%), and number of averages (5). A high-resolution whole-brain T1W scan (1×1×1mm³) was included for anatomical reference. The MT-GRE sequence used TE/TR of 4.5/450ms, 40° flip angle, 1.5 mm slice thickness with 16 slices, and total scan time of approximately 9min:20s, whereas the TSE sequence used TE/TR of 11.5/890ms, 90°/180° flip angles, 3 mm slice thickness with 10 slices, and a total scan time of approximately 7min:30s. Analysis Pipeline: The processing pipeline consisted of three stages: preprocessing, mid-brain segmentation, and contrast ratio (CR) computation (Figure 1). The five NM-MRI volumes were preprocessed using motion correction (MoCo), bias field correction (BiCo), brain extraction (BET), temporal averaging, and intensity normalization procedures to ensure consistent image quality across participants and acquisition types. During segmentation, the T1-weighted image was brain-extracted and the midbrain segmented using the Learning Embeddings for Atlas Propagation (LEAP) algorithm [8]. The midbrain mask was transformed into NM-MRI space to enable region-of-interest (ROI) analysis. To robustly estimate SN contrast ratio, voxel intensities within the midbrain mask were extracted and trimmed (2nd–98th percentile) to reduce noise and mask leakage. The top 20% of intensities were classified as SN-like and the bottom 30% as background. The contrast ratio (CR) was computed as the percentage difference between their median intensities, normalized to the background as shown by equation (1). This relative intensity-based framework was intended to provide a robust surrogate measure of SN-related contrast sensitivity rather than a direct anatomical segmentation of the SN.

Exemplar outputs from each stage of the analysis pipeline are shown in Figure 2, with resultant median regional intensities and CR for each modality reported in Table 1. Given the sequence dependence of MRI signal intensities, analyses focused on the SN contrast ratio. The contrast ratio for MT-GRE (mean-CR=27.49%) was substantially greater that of the TSE sequence (mean-CR=15.78%). This increase indicates that background tissue experiences proportionally greater signal suppression under MT-GRE conditions, resulting in enhanced delineation of the SN.

We compared the contrast ratio (CR) obtained with TSE and MT-GRE acquisitions using a harmonized imaging protocol, with matched in-plane resolution, number of signal averages, and comparable brain coverage. We employed a segmentation-free analysis pipeline to quantitatively estimate CR, which yielded consistent neuromelanin contrast measurements while reducing dependence on anatomical segmentation accuracy, a factor that may vary across acquisition types. Both sequences provided high-contrast visualization of neuromelanin within the SN; however, MT-GRE consistently demonstrated higher CR values than TSE. This improvement was primarily driven by a greater suppression of background signal, consistent with the explicit MT preparation in MT-GRE, which preferentially attenuates signal from tissues with higher macromolecular content, such as the crus cerebri.

In conclusion, both TSE and MT-GRE are capable of capturing neuromelanin contrast in the SN. However, MT-GRE demonstrated superior SN-to-background contrast using the proposed surrogate SN contrast metric in a single-site setting. Further work is required to systematically evaluate the sequences’ impact on PD stratification performance and sensitivity to detect longitudinal signal changes in PD.
Vahid MALEKIAN (London, United Kingdom) , Richard JOULES , Stéphane LEHERICY , Robin WOLZ
16:15 - 17:00 #54485 - P390 Fractal dimensionality of grey and white matter predicts distinct cognitive dimensions in bipolar disorder: a multiblock partial least squares analysis.
P390 Fractal dimensionality of grey and white matter predicts distinct cognitive dimensions in bipolar disorder: a multiblock partial least squares analysis.

Bipolar disorder (BD) is characterised by structural brain alterations and cognitive impairment. Cerebral structures exhibit fractal organisation, and pathological processes are thought to disrupt this complexity. Fractal dimension (FD), estimated through box-counting, quantifies the morphological complexity of brain tissue and has emerged as a sensitive marker in neurological and psychiatric conditions [1]. Applied slice-by-slice to T1-weighted MRI, FD captured regionally specific grey matter (GM) alterations in schizophrenia and BD [1], while its extension to diffusion tensor imaging revealed localised white matter (WM) complexity deviations in BD [2]. Reductions in WM FD have been linked to poorer cognitive performance [3]. However, associations between regional GM and WM fractal complexity, sociodemographic factors, and cognitive outcomes in BD remain unexplored. This study characterised multivariate associations across cognitive domains using multiblock partial least squares (MB-PLS), simultaneously modelling the joint contributions of sociodemographic, GM complexity, and WM complexity across five regions of interest (ROIs) to cognitive outcomes.

Thirty BD participants underwent T1-weighted MRI, DTI, and neuropsychological assessment covering ten cognitive outcomes (verbal memory, digit sequencing, token test, affective and non-affective interference control, verbal fluency, symbol coding, tower of london). T1- and DTI-FD were estimated slice-by-slice using a modified box-counting algorithm [1,2] and averaged within ROIs including frontal, parietal, temporal, occipital, limbic. MB-PLS was applied with three predictor blocks: sociodemographic variables (age, sex, education), FD-T1 and FD-DTI both including averaged FD within the five aforementioned ROIs, considering as response variable cognitive domains. For each latent vector (LV), block scores, loadings, and Block Importance in Projection (BIP) (Figure 1A) were computed per predictor block, alongside composite super-scores summarizing information across blocks. Variable Importance in Projection (VIP) scores (Figure 1B-D) were extracted to identify the most influential predictors across LVs [4]. Significance was assessed via Pearson correlation between predictor and response super scores, followed by permutation testing (n=1000) applying a randomly shuffling response’s labels for each subject [5].

Three significant LVs were retained. LV1 (Figure 2) was driven by sociodemographic variables (BI=0.712; r=0.631, p<0.001), capturing a positive association with all cognitive domains, most strongly verbal memory and affective interference. Higher education (VIP=1.29), younger age, and female participants were associated with better cognitive performance across all domains. LV2 (Figure 3) was dominated by FD-T1 (BI=0.682; r=0.451, p=0.013) and captured a processing speed and working memory dimension, with symbol coding and digit sequencing as the top-loading outcomes. Greater GM complexity uniformly across all ROIs, alongside increased WM complexity in the limbic region (VIP=1.26, DTI block BI=0.193), was associated with better processing speed, executive planning and notably better non-affective interference control - a pattern accentuated by higher education and younger age. LV3 (Figure 3) was primarily driven by FD-DTI (BI=0.543; r=0.541, p=0.002), revealing a dissociation between executive-language function and interference control. Greater WM complexity in fronto-parietal regions (frontal VIP=1.20; parietal VIP=1.01), combined with reduced limbic WM complexity (VIP=1.26) was associated with better executive planning and language comprehension (i.e., tower of london and token test) but poorer affective interference control - a pattern accentuated by younger age and male participants. While GM complexity in LV2 supported both processing speed and non-affective interference, WM fronto-parietal complexity in LV3 facilitated executive function at the expense of interference regulation, suggesting that GM and WM complexity relate to interference control through distinct cognitive mechanisms.

MB-PLS revealed three brain–behaviour axes linking fractal morphology to cognition in BD [6], each linking a different predictor block to a distinct cognitive domain: sociodemographic variables to verbal memory and affective interference, GM complexity to processing speed and working memory, and WM complexity to executive function and interference control. Greater GM complexity was associated with better processing speed and non-affective interference [3], while greater WM fronto-parietal complexity supported executive function but was associated with poorer affective interference control

FD emerges as a sensitive morphological marker capturing distinct structural–cognitive dimensions in BD, underscoring the value of multiblock approaches for disentangling brain–behaviour relationships in psychiatric disorders [6].
Emma TASSI (Italy, Italy) , Letizia SQUARCINA , Eleonora MAGGIONI , Lorena DI CONSOLI , Francesca SIRI , Giandomenico SCHIENA , Ylenia BARONE , Antonio CALLARI , Guido NOSARI , Giorgio CONTE , Giuseppe DELVECCHIO , Paolo BRAMBILLA
16:15 - 17:00 #54654 - P391 Regional Perfusion and Permeability Assessment in MS Using BBB-ASL MRI.
P391 Regional Perfusion and Permeability Assessment in MS Using BBB-ASL MRI.

Reduced cortical perfusion patterns are often associated with multiple sclerosis (MS) related cognitive decline, along with blood-brain barrier (BBB) breakdown due to demyelination [1,2]. Gadolinium-based contrast agents (GBCA) in MRI have been used mainly to assess cortical perfusion and lesional activity [3], detecting perfusion patterns and BBB disruption [4]. However, they might miss subtle BBB changes due to their high molecular weight. BBB Arterial Spin Labeling (BBB-ASL) MRI is a non-invasive technique for assessing perfusion and BBB water permeability [5]. The BBB-ASL method has shown promising results for detecting subtle changes in the BBB in healthy volunteers and in brain tumors [6,7]. In this study, the regional perfusion and BBB permeability in MS were investigated using BBB-ASL.

Twenty-six patients with MS (pwMS) and five healthy volunteers were scanned on a clinical 3T MRI scanner (MAGNETOM Prisma, Siemens Healthineers, Erlangen, Germany) using a 32-channel head coil. A combination of single-TE and multi-TE Hadamard-encoded pseudo-continuous (pCASL) sequences, implemented using the vendor-independent MRI framework gammaSTAR [8], with 3D GRASE readout and two FOCI inversion pulses to suppress background with T1 values of 700 and 1400 ms, were used. A single-TE Hadamard-8 matrix was acquired with a sub-bolus duration of 400 ms, post-labeling delays (PLD [ms]) of 600 and 800, TE=13.2 ms, TR=4000 ms, resulting in two sets of seven inflow times (TI [ms]) [1000:400:3400] and [1200:400:3600], respectively. Additionally, a multi-TE Hadamard-4 matrix was acquired with a sub-bolus duration of 1000 ms, PLD of 500 ms, TR 4500 ms, eight TEs [13.8:27.6:207 ms], resulting in datasets with three TIs [1500:1000:3500 ms]. Pre- and post-contrast 3D T1w MPRAGE (TR=2300 ms, TE=2.26 ms, TI= 900ms, flip angle=8°, slice thickness=1 mm) were acquired as structural references. Additionally, a 3D fluid attenuated inversion recovery (FLAIR) sequence (TR=5000 ms, TE=388 ms, slice thickness=0.9 mm) was acquired. Cerebral blood flow (CBF) and water exchange time (Tex) maps were quantified using ExploreASL [9]. The LST-ASI tool in the Lesion Segmentation Toolbox (LST) was used to automatically generate lesion masks [10]. The MNI structural atlas was registered to the ASL space, and lesion masks were excluded from the atlas [11]. Histograms of the CBF and Tex maps were assessed using MATLAB 2024 (MathWorks Inc., Natick, MA). A Mann-Whitney rank-sum test with Bonferroni correction was used to compare CBF and Tex values between healthy controls and pwMS. (significance threshold p<0.01).

Figure 1 shows CBF and Tex maps of a pwMS. Table 1 shows the age and sex distribution of the pwMS and healthy controls. All the pwMS included in this study were relapsing remitting MS (RRMS), and 21 of them were female (mean (±std) age =36.1±10.8 years). Three of the healthy controls were female with a mean age of 37.3±8.7 years. Figures 2 and 3 show the CBF and Tex values from frontal, occipital, parietal, and temporal lobes, as well as the putamen region in pwMS and controls. In CBF maps, despite the strict significance threshold, pwMS showed higher CBF values than controls in all five regions. (P-frontal=0.05, P-occipital=0.044, P-parietal=0.0296, P-putamen=0.0387, P-temporal=0.0339). On the other hand, a similar trend was not captured in the Tex maps.

This study investigated the regional perfusion and permeability differences between RRMS and healthy control groups. The RRMS group showed global hyperperfusion compared with the control groups. Perfusion patterns in pwMS were shown to change with disease stage and the presence of active lesions [3,12]. Although previous literature has shown decreased cortical perfusion and an association with cognitive decline [2], our results may indicate an early active state. Further studies should validate these results with a larger patient and control cohort, and include comparisons of white matter and gray matter, as well as associations with cognitive scores.
Ayse Irem CETIN (Istanbul, Turkey) , Gulce TURHAN , Ahmed Serkan EMEKLI , Dilaver KAYA , David R VAN NEDERPELT , Beatriz E. PADRELA , Amnah MAHROO , Simon KONSTANDIN , Daniel Christopher HONKISS , Nora-Josefin BREUTIGAM , Vera C. KEIL , Frederik BARKHOF , Klaus EICKEL , Hugo VRENKEN , Henk Jmm MUTSAERTS , Matthias GÜNTHER , Alp DINÇER , Jan PETR , Esin OZTURK-ISIK
16:15 - 17:00 #54443 - P392 MR-perfusion changes and white matter volume in multiple sclerosis.
P392 MR-perfusion changes and white matter volume in multiple sclerosis.

Multiple sclerosis (MS) is one of the most common demyelinating diseases, affecting young adults and characterized by progressive disability. This disease is underpinned by two pathological processes - autoimmune inflammation and neurodegeneration, which are observed from the earliest stages of the disease. MRI allows for the qualitative and quantitative assessment of these processes using MR-perfusion and MR-morphometry. However, the precise relationship between these pathological processes in the brain tissue in MS remains poorly understood, which determined the purpose of this study. Purpose: to assess changes in perfusion and volume of brain tissue in multiple sclerosis.

The MR study was carried out on a MR-scanner "Ingenia" ("Philips") 3 Tesla. The study included 12 healthy volunteers and 31 patients with demyelinating disease of the central nervous system - 6 patients with clinically isolated syndrome (CIS), 7 patients with RRMS in the acute stage, 13 patients with RRMS in remission and 5 patients with SPMS. To assess perfusion, the dynamic susceptibility contrast (DSC) method was used. Quantitative and qualitative assessment of CBF and CBV in the white and gray matter of different lobes of the brain. To assess morphometry, the obtained T1-WI and FLAIR images were loaded into an automated system for calculating the volumes of brain structures, based on the segmentation method. The volumes of the white matter of the brain (relWMV) and gray matter (relGMV) were relatively calculated based on the total intracranial volume as a percentage.

A moderate correlation was found between the decrease in the volume of white matter of the brain and the severity of focal changes (r-Spearman correlation coefficient 0.4, p≤0.05); compared to CIS, in patients with relapsing-remitting multiple sclerosis in the remission stage and secondary progressive form of MS (SPMS), relCBF was significantly reduced by 32% and 40% (p≤0.05); compared to the CIS group, in patients with RRMS (exacerbation stage) and RRMS (remission stage), the volumes were significantly reduced by 8% and 11% (p≤0.05), respectively.

A moderate correlation between cerebral white matter volume and CBF was found: lower perfusion values corresponded to lower cerebral white matter volume values. Therefore, it can be assumed that these processes are a consequence of one another or occur in parallel.

Therefore, using MRI perfusion and morphometry techniques, it is possible to study the main pathophysiological changes in MS and assess the extent of these changes. We thank the Russian Science Foundation for supporting this work (№ 23-15-00377-П).
Andrey TULUPOV (Novosibirsk, Russia) , Liubov VASILKIV , Julia STANKEVICH
16:15 - 17:00 #54379 - P393 Impact of harmonization on morphological connectivity graphs in MS disability estimation.
P393 Impact of harmonization on morphological connectivity graphs in MS disability estimation.

Multiple sclerosis (MS) is a chronic autoimmune disease of the central nervous system that causes inflammatory and demyelinating lesions in white matter, as well as neurodegenerative processes leading to atrophy of gray matter (GM). These pathological processes result in physical and cognitive impairments that vary widely among patients, leading to the identification of different clinical forms and disability scores (EDSS). MRI is a standard tool for diagnostic and monitoring MS patients using several contrast images (T1w, T2w, FLAIR, …). Based on graph theory, brain connectivity constitutes a new approach to model functional, structural, and morphological connectivity, using different acquisition sequences such as fMRI, DTI and T1w-MRI, respectively. In this work, we use morphological connectivity, obtained from T1w-MRI acquired in clinical routine, in the frame of the French database OFSEP. However, this database was acquired across a large number of French centers, leading to numerous bias in MRI images, such as MRI manufacturer and magnetic field. These biases affect MRI images, and thus morphological measurements. As the performances of machine learning models can be hindered by such biases, we address the issue of graph harmonization, in the context of disability (EDSS) estimation using Graph Convolutional Networks (GCN) [1].

Our study involves 3,488 T1w-MRI images, from the OFSEP database (70 centers, 3 MRI manufacturers and 2 magnetic fields), obtained from patients with Relapsing-Remitting MS (Fig.1 & 2). From these T1w-MRI images, mean cortical thickness is extracted from 68 regions using the Desikan atlas [2]. First, these 68 measurements are linked via a distance calculation to generate a morphological graph for each brain, in which the weights assigned to the edges correlate with the similarity of thickness across the regions. Then, we train a neural network consisting of 3 GCN layers, without dropout, and a 68-neuron MLP head, to classify the graphs based on the MRI manufacturer and field strength, the patient sex, as well as to regress the patient age and EDSS score. Second, the 68 cortical region thickness measurements are harmonized using ComBat [3]. Each region thickness is modelized as an overall average, modulated by acquisition biases (MRI manufacturer and field), clinical parameters (sex, age, EDSS) and noise. Then, we compute new distances for 3,488 harmonized graphs. Finally, we compare the GCN performance results obtained from original and harmonized graphs. The models were trained with a 60/20/20 split ratio for the training/validation/test sets, for 500 epochs and a learning rate of 0.001 using adam optimizer. The experiment was conducted using 3 different seeds for the data split.

The GCN performances are reported using F1-score for classification tasks and RMSE for regression tasks in Fig.3. The results show a consistent decrease in performance after harmonization for tasks related to MRI biases (manufacturer and field), while preserving similar performances for tasks related to clinical parameters (patient sex, age, and EDSS).

The decrease in performance observed in tasks related to MRI biases is significant but remain subtle, with a F1-score dropping from 0.80 to 0.73 for field strength and 0.74 to 0.66 for manufacturer. Thus, this method does not guarantee that image biases have been completely corrected.

Our study focuses on reducing bias in MRI data from MS patients. By applying the ComBat method on morphological graphs, we construct a harmonized graph dataset. A GCN is trained on both original and harmonized graphs for a comparative analysis. Our results show that this harmonization method was not efficient enough to completely eliminate bias in the images, given the GCN performances on harmonized graphs. Nevertheless, these premilinary results are encouraging for the development of future harmonization methods.
Basile CARACALLA (Lyon) , Thomas GRENIER , Françoise DURAND-DUBIEF , Dominique SAPPEY-MARINIER
16:15 - 17:00 #54460 - P394 Paired high- and low-field Multiple Sclerosis study between a 3 T scanner and a low-field portable Halbach scanner.
P394 Paired high- and low-field Multiple Sclerosis study between a 3 T scanner and a low-field portable Halbach scanner.

Low accessibility of MRI scanners worldwide limits the possibility of diagnosis and follow-up of many illnesses [1], making patients more likely to being misdiagnosed or undergoing ill-suited treatments. In the case of Multiple Sclerosis (MS), MRI scanners are the gold-standard for diagnosis and check-ups, since sequences like Fluid-Attenuated Inversion Recovery (FLAIR) highlight lesion plaques, making lesion load and distribution easy to quantify [2]. MS affects millions worldwide [3], and its nature makes symptomatic episodes and patient evolution greatly variable between patients [4]. However, MS is a slow-evolving illness and can be palliated with proper follow-up and neurological and physiological treatments [5]. These two factors (inter-patient variability and treatment possibilities) make MRI access a crucial factor in the battle against MS. In this work, we present a preliminary study of the viability of MS diagnosis using a low-field (0.09 T) and low-cost (<100 k€) elliptical Halbach MRI scanner [6], in a paired imaging round with a high-field 3 T scanner.

The patient cohort was selected from the database of Valencia’s La Fe University Hospital and consisted of MS patients in the early-to-mid stages of the disease, who underwent the 3 T protocol during their scheduled follow-up visits. The 0.09 T scanner (Fig. 2) is fitted with a single TX-RX helmet RF coil with 26 cm diameter, 23 cm in length, and 30 wire turns. Electromagnetic noise suppression down to thermal compatible levels was achieved using a conductive cloth, covering the patient. The study comprises the acquisition of two protocols, one in each scanner. The 3 T protocol comprises a T1-weighted (T1w) Gradient Echo sequence, a T2-weighted (T2w) Turbo Spin Echo (TSE) sequence, a T2w-FLAIR TSE, and a diffusion-weighted (DWI) sequence (b = 1000 s/mm2), for a total scan time of around 25 minutes. The 0.09 T protocol (Fig. 1) comprises three axial sequences: T1w TSE, T2w TSE, and T2w-FLAIR TSE, for a scan time of 45 minutes. All of them have an isotropic in-plane resolution of 1.5 mm, and an out-of-plane resolution of 4 mm. DWI sequence was excluded due to scan time being too long for patients. T1w is TSE, since inhomogeneities are too large for effective Gradient-Echo imaging. Image reconstruction comprises two steps: denoising with SNRAware [7], and distortion correction using field maps acquired using SPDS [8].

Figure 3 shows the acquired 0.09 T images of a patient, showing clear hyperintensities in the T2w-FLAIR (bottom row), corresponding to MS lesion plaques (blue arrows) confirmed by the 3 T. Red arrows show lesion plaques visible in the T2w (middle row), but not in the T2w-FLAIR. Figure 4 shows the complete set of T2w image slices, showing a limited field-of-view (FoV), where we cannot see past the ventricles for this patient. This limitation in FoV is determined by how far the patient can reach inside the scanner when their shoulders contact the bore of the magnet, sometimes leading to the brain occupying an “unoptimized” region of the magnet with large field inhomogeneities.

Figure 3 shows that lesion identification is possible, with smaller lesions blurred by the denoising algorithm in the T2-FLAIR but often still visible in the T2w. Figure 4 shows the greatest limitation of this prototype: axial coverage. The magnet is 44 cm in length and was optimized for homogeneity in a 20 cm DSV at its center. Patients with limited mobility or shorter neck length cannot reach the center of the magnet, limiting the FoV due to large B0 inhomogeneities outside set sphere and the saddle region of the gradient. Distortions are not completely fixed by the SPDS algorithm, implying that they may be due to abrupt field changes or gradient non-linearities. The longer protocol duration in the 0.09 T is also due to eddy currents in the shielding and structure limiting the length of our echo train length. However, the scanner was able to operate in an unshielded and notably noisy environment. It was placed in the corridor next to the 3 T device, whilst operating at 1.6 times the thermal noise floor, and with minimal preparation time (5 minutes since the patient is positioned and the protocol in launched), proving notable stability and repetitiveness during the 6 months of the imaging round.

Despite some limitations (long protocol duration, limited axial coverage and blurred lesions), lesion detection has been validated by radiologists. The possibility to operate with minimal preparation in an unshielded environment speaks of the robustness of the system in places conventionally unfit for MRI. The system is also capable of identifying larger lesion plaques using a T2w-FLAIR sequence, whilst detecting smaller ones in the T2w. The remaining limitations are also being tackled currently, focusing on a redesign of the magnet for a shorter length, a custom structure than minimizes eddy currents, and a more robust denoiser that does not blur smaller lesions.
Pablo GARCÍA-CRISTÓBAL (Valencia, Spain) , Eduardo PALLÁS , Teresa GUALLART-NAVAL , José Ramón AVIÑÓ-NOUSELLES , Sonia GINÉS , Paloma MARTÍNEZ-SEBASTIA , Amadeo TEN-ESTEVE , José Miguel ALGARÍN , Luis MARTÍ-BONMATÍ , Joseba ALONSO
16:15 - 17:00 #54446 - P395 Radiologically isolated syndrome as early multiple sclerosis: evolution of diagnostic criteria.
P395 Radiologically isolated syndrome as early multiple sclerosis: evolution of diagnostic criteria.

Radiologically isolated syndrome (RIS) is currently considered an early preclinical stage of multiple sclerosis (MS). RIS is characterized by typical brain or spinal cord lesions indicative of autoimmune inflammatory demyelination. The aim of the study was to assess the frequency of RIS according to the updated 2023 criteria among a cohort of the Siberia (Russia, Novosibirsk city) and to determine the time to the first clinical episode of demyelination. A secondary objective of the study was to conduct a comparative analysis of MRI quality characteristics in subgroups of patients with and without two-year MRI activity, as well as in subgroups of patients with and without conversion to MS throughout the entire follow-up period.

The study design was retrospective, with analysis of baseline and follow-up data. MRI activity in patients with RIS was measured annually. Forty-five patients who met the 2023 RIS criteria were included in the analysis.

MRI activity, defined as the appearance of two or more new lesions or one or more contrast-enhancing lesions, was detected in 30 of 45 (67 %) patients during two-year follow-up. Patients with MRI activity were more likely to progress to definitive MS than patients without MRI activity (53.0 and 6.7 %, respectively, p < 0.001). Multiple logistic regression confirmed an increased risk of developing a first clinical episode in the group of patients with subsequent MRI activity (odds ratio 16.01, 95% confidence interval 1.52–168.17, p = 0.02). Earlier diagnosis of multiple sclerosis at the preclinical stage became possible after the introduction of the updated McDonald criteria (2024). Among asymptomatic RIS patients, compliance with the new MS criteria was confirmed in 71 % (20/28).

The study confirmed the presence of spinal lesions on the initial MRI as a key prognostic risk factor for clinical conversion of RIS to MS. The use of user-friendly biomarkers in real-world clinical practice may increase the potential for personalized clinical intervention and requires further study.

Key prognostic risk factors for the clinical conversion of RIS to MS have been confirmed: the presence of spinal lesions on baseline MRI and the appearance of new lesions on subsequent scans. In the studied cohort, in accordance with the updated diagnostic criteria, a diagnosis of MS was confirmed at the preclinical stage in 71% of patients without MS symptoms (RIS); this should prompt an immediate discussion regarding the initiation of disease-modifying therapy. We thank the Russian Science Foundation for supporting this work (№ 23-15-00377-П).
Andrey TULUPOV (Novosibirsk, Russia) , Liubov VASILKIV , Julia STANKEVICH , Denis KOROBKO
16:15 - 17:00 #54725 - P396 Early post-radiotherapy quantitative susceptibility mapping changes associated with one-year neurocognitive outcome in craniofacial tumor patients.
P396 Early post-radiotherapy quantitative susceptibility mapping changes associated with one-year neurocognitive outcome in craniofacial tumor patients.

Craniofacial tumor radiotherapy (RT) may affect adjacent healthy brain tissue, leading to long-term neurocognitive impairment, particularly in memory, processing speed, and executive function [1]. Early biomarkers predictive of these outcomes are still lacking. Quantitative Susceptibility Mapping (QSM) is an MRI technique that provides quantitative maps of tissue magnetic susceptibility, reflecting local variations in iron content, myelin, and microstructural composition [2]. As radiation-induced tissue injury involves alterations in myelin, iron homeostasis, and microvascular injury with potential microhemorrhagic changes, QSM may be sensitive to early structural alterations associated with later cognitive dysfunction. This study investigates associations between early post-RT QSM changes and one year neurocognitive outcome, with potential prognostic implications.

Sixteen patients with craniofacial tumors underwent QSM MRI immediately after RT (
Temporal lobe QSM changes were significantly associated with one-year verbal memory decline (n=6), surviving permutation-based FDR correction (p=0.05). This association showed a consistent negative relationship in Spearman correlation (r=−0.83, p=0.031) and was further supported by OLS regression with HC3 robust standard errors (β=−4318.1, p=0.049, Figure 1). In the frontal lobe, QSM changes were associated with lower scores on executive function (n=7), reaching significance only in HC3 robust regression (β=−7955.6, p=0.016), while the other tested correlation analyses did not survive multiple-comparison correction. No significant associations were observed for hippocampal measures or global processing speed.

These preliminary findings suggest that early post-radiotherapy QSM alterations may reflect region-specific tissue changes associated with later neurocognitive decline. The association between temporal regions and verbal memory as well as between frontal regions and executive functions, are consistent with known neuro-anatomical models. However, the small sample size and exploratory design require cautious interpretation.

Early post-RT QSM changes may represent potential biomarkers of subsequent domain-specific neurocognitive decline, particularly in memory-related domains. Larger prospective studies are needed to validate these findings.
Paolo FENECH (Milan, Italy) , Tineke VAN DER ZON , Miranda KRAMER , Yutin HE , Joke SPIKMAN , Langendijk HANS , Anne BUUNK , Chris VAN DER WEIJDEN , Anouk VAN DER HOORN
16:15 - 17:00 #54616 - P397 Mechanical fingerprints of glioma: voxel-wise deformation outperforms volumetric change for non-invasive molecular and subtype stratification.
P397 Mechanical fingerprints of glioma: voxel-wise deformation outperforms volumetric change for non-invasive molecular and subtype stratification.

Conventional glioma response assessment criteria have been primarily based on volumetric changes in the tumor core and enhancing tissue [1]. This overlooks how the surrounding brain parenchyma deforms over time, even though peritumoral mechanics reflect underlying tumor biology and microenvironmental dynamics. Jacobian-derived tissue compression has been shown to identify glioma patients with shorter survival [2], and combining radial growth with peritumoral deformation further improves prognostic stratification in glioblastoma [3]. Whether these biomechanical markers can also discriminate molecular subtypes (IDH status, MGMT methylation) and histological grade — endpoints that currently require biopsy — remains untested. We evaluate that question on a multi-subtype longitudinal glioma cohort and benchmark the results against conventional volumetric markers.

We analysed the publicly available UCSF-ALPTDG dataset [4] (298 adult diffuse gliomas, two post-treatment MRI sessions, expert segmentations of tumor core, enhancing tissue, edema, and necrosis). Inter-session deformation fields were computed using SyN non-linear registration (ANTsPy [5,6]), using native T1-weighted sequences to avoid gadolinium-induced intensity variations that would otherwise influence registration. Three voxel-wise maps were derived: log-Jacobian determinant (log|J|), decomposed into Expansion-Jac (log|J| > 0) and Compression-Jac (log|J| < 0), and warp magnitude ‖u‖₂. Each map was summarised within six regions of interest: whole brain, tumor core, enhancing tissue, edema, a 3-cm peritumoral ring and a 3-cm perilesional zone (Figure 1). As comparators, we computed radial growth (ΔR) for core, enhancing, edema, and whole tumor. Analyses were restricted to growing tumors (ΔR_WT > 0; N = 184). All metrics were normalised by inter-session interval. Endpoint discrimination (WHO diagnosis, grade, IDH, MGMT) was assessed using Kruskal–Wallis/Mann–Whitney tests with Benjamini–Hochberg correction (p_BH) and ROC AUC with 95% bootstrap CIs (1,000 resamples); marker comparisons used the DeLong test.

Biomechanical markers in peri- and extratumoral regions substantially outperformed volumetric markers across all tested endpoints. For histological grade, peritumoral and edema Expansion-Jac reached p_BH = 3.4×10⁻¹² and 3.1×10⁻¹², respectively, compared with p_BH = 2.9×10⁻² for the best radial growth marker (ΔR_enhancing). For IDH status, peritumoral Expansion-Jac achieved p_BH = 1.1×10⁻¹⁰ versus 1.9×10⁻² for ΔR_enhancing. Edema expansion rate increased monotonically with grade (Grade 4 vs. 2 and 3: p < 10⁻⁴), and separated IDH-wildtype from IDH-mutant tumors (p < 10⁻⁴) (Figure 3). ROC analysis (Figure 4) confirmed these findings: peritumoral Expansion-Jac achieved AUCs of 0.77 [0.71–0.84] for IDH wildtype, 0.72 [0.65–0.79] for Grade 4, and 0.72 [0.66–0.77] for glioblastoma. All radial growth markers remained near chance (AUC 0.49–0.56), with DeLong-confirmed superiority of biomechanical markers at p < 0.05 for all four endpoints. MGMT methylation was the weakest endpoint; Expansion-Jac in edema yielded AUC 0.65 [0.58–0.77]. Edema Expansion-Jac correlated only moderately with radial growth of edema (ΔR_edema; r = 0.64, R² = 0.40), indicating ~60% of the deformation signal is not captured by regional volumetric change (Figure 2).

The discriminative biomechanical deformation signal resides at the tumor–parenchyma interface rather than in the tumor core — a region that conventional volumetric markers effectively reduce to a single number [7]. Decomposing the Jacobian field is critical: the raw log|J| averages opposing dynamics and discriminates poorly, whereas Expansion-Jac isolates the inflammatory peritumoral response that encodes molecular tumor biology. These findings suggest that the mechanical imprint a glioma leaves on surrounding tissue encodes molecular and histological information accessible non-invasively [8]. Limitations include residual inter-session T1 intensity differences that may bias deformation estimation, and the absence of a SyN registration hyperparameter sensitivity analysis. Future work will examine whether deformation-based markers carry independent prognostic value within individual molecular subtypes, and how Jacobian distributions evolve along subtype-specific disease trajectories.

Voxel-wise deformation markers derived from serial T1-weighted MRI — particularly Expansion-Jac in peritumoral and edema regions — discriminate IDH status, MGMT methylation, histological grade, and WHO diagnosis more accurately than conventional volumetric markers, and capture biomechanical information beyond regional size change. These results position longitudinal deformation analysis as a complementary imaging strategy, warranting consideration alongside established volumetric markers for glioma characterisation.
Carles LOPEZ-MATEU (Valencia, Spain) , Maria GÓMEZ-MAHIQUES , F. Javier GIL-TERRÓN , Victor MONTOSA-I-MICO , Donatas SEDEREVIČIUS , Kyrre E EMBLEM , Juan M GARCIA-GOMEZ , Elies Fuster-Garcia FUSTER-GARCIA
16:15 - 17:00 #54517 - P398 Cross-modality radiomic biomarker consistency in glioma: Comparing LASSO-selected features from DCE-MRI pharmacokinetic maps and structural MRI.
P398 Cross-modality radiomic biomarker consistency in glioma: Comparing LASSO-selected features from DCE-MRI pharmacokinetic maps and structural MRI.

Radiomics enables quantitative, reproducible tumour characterisation from routine MRI, and has demonstrated broad utility in glioma for diagnosis, grading, and treatment response assessment[1,2]. Yet a fundamental question remains unresolved: are selected radiomic biomarkers intrinsic properties of the tumour, or artefacts of the imaging modality? In glioma, this question carries direct clinical weight across two demanding tasks — distinguishing true progression (TP) from pseudoprogression (PSP) post-treatment[3–5] and detecting longitudinal tumour progression in surveillance cohorts. We systematically compared LASSO-selected radiomic features from two independent glioma studies employing fundamentally distinct MRI modalities: Our aim was to identify features with cross-modality consistency — candidates for modality-agnostic biomarkers — and to characterise those that are modality-specific.

Study 1: Tumour ROIs were manually delineated by a radiologist and applied to DCE-MRI PK parameter maps (Ktrans, ve)[6] in a local glioma cohort (65 patients) for binary TP vs. PSP classification. Radiomic features were extracted within these ROIs, and feature selection was performed using LASSO, Ridge, and ElasticNet regression[7]. Downstream classification performance was evaluated[8]. Study 2: The MU glioma post-treatment dataset[9] was analysed. Automated whole-tumour masks were generated from FLAIR via thresholding and retained only when Dice coefficient ≥0.5 against expert segmentations, yielding 144 samples. Radiomic features were extracted from FLAIR images using both automated and expert masks; LASSO regression was applied for feature selection targeting progression status [8].

In Study 1, ElasticNet-selected features combined with Random Forest achieved the strongest classification performance (accuracy: 88.9%; F1: 92.9%). LASSO-based models showed consistent performance, with LASSO-selected features dominated by shape descriptors (MajorAxisLength, SizeZoneNonUniformity) and first-order statistics (InterquartileRange, Skewness, Variance). In Study 2, classification performance was modest across all configurations, with AUC ranging from 0.46–0.60 and F1 from 0.75–0.91, reflecting the pronounced class imbalance. Expert mask-derived features consistently outperformed automated mask features. LASSO-selected features included shape descriptors (Flatness, Sphericity, Elongation) and zone-based texture metrics (ZoneEntropy, SizeZoneNonUniformity, RunVariance, Strength). Given the exploratory nature of this work, emphasis is placed on cross-study feature-level consistency rather than classification benchmarking. Cross-study overlap was identified in shape descriptors (MajorAxisLength, Sphericity) and zone-based non-uniformity measures (SizeZoneNonUniformity), selected independently by LASSO across both modalities. Modality-specific features comprised first-order PK statistics in Study 1, and entropy- and run-length-based texture features in Study 2.

The cross-modality persistence of shape features is mechanistically principled: shape descriptors are derived solely from the tumour mask and are intensity-independent[10]. Their consistent LASSO selection in both studies confirms that tumour geometry — irregularity, elongation, and compactness — encodes clinically discriminative information irrespective of the underlying image contrast[11]. First-order statistics showed partial overlap but diverge in biological interpretation: Variance of Ktrans reflects spatial heterogeneity of blood-brain barrier permeability, whereas FLAIR intensity Variance captures heterogeneity of oedema and tumour infiltration extent[12]. That LASSO selects analogous statistical descriptors from physiologically distinct signals suggests tumour heterogeneity — regardless of its physical substrate — may be a conserved, cross-modality detectable property. Zone-based GLSZM features, partially shared, quantify the distribution of homogeneous intensity zones and reflect tumour architectural heterogeneity expressed through different physical contrasts[11]. Entropy and run-length metrics, exclusive to Study 2, capture directional intensity patterns informative in structural MRI but without meaningful analogues in PK maps. Limitations include differing cohorts, institutions, clinical endpoints, class distributions, and feature extraction pipelines; this comparison is exploratory and does not support direct statistical inference across studies.

Cross-modality comparison of LASSO-selected radiomic features reveals a partially overlapping biomarker signature in glioma. Shape descriptors emerge as robustly modality-agnostic, zone-based texture features show partial transferability, and entropy-based metrics remain modality-specific. These findings reframe radiomic feature selection as a means of identifying which tumour properties are invariant across MRI contrasts — with direct implications for building transferable, multi-modal radiomic frameworks in neuro-oncology.
Akashleena CHATTERJEE (Vienna, Austria) , Matthias BLAICKNER
16:15 - 17:00 #54515 - P399 Automated enhancing tumour extraction via T1c image subtraction: A radiomic comparison against expert delineation in post-treatment Glioma.
P399 Automated enhancing tumour extraction via T1c image subtraction: A radiomic comparison against expert delineation in post-treatment Glioma.

The enhancing tumour (ET) region on post-contrast T1-weighted MRI is a key imaging biomarker of glioma activity and treatment response, with contrast enhancement reflecting blood-brain barrier disruption associated with tumour progression [1]. Expert ET delineation is resource-intensive and subject to substantial inter-rater variability, with reported intra- and inter-rater variability in glioma boundary estimation of 20% and 28% respectively [2], underscoring the need for automated alternatives to scale radiomic workflows [3]. This study investigates whether ET regions derived from T1c image subtraction (post − pre) multiplied by automated FLAIR whole tumour masks can support radiomic glioma progression classification comparably to expert ET annotations.

From the MU-Glioma post-treatment dataset — comprising 203 patients across 596 post-treatment MRI timepoints with multiparametric sequences and expert tumour annotations [4] — Otsu thresholding was applied to FLAIR images to generate automated whole tumour masks [5]. Otsu thresholding was selected as a training-free, parameter-free baseline requiring no annotated training data, enabling a reproducible lower-bound assessment of automated segmentation performance against which more sophisticated pipelines can be benchmarked [6]. To extract the ET region, pre-contrast T1 images were subtracted from post-contrast T1c images to produce a voxel-wise enhancement map. This map was then spatially constrained to the tumour volume by element-wise multiplication with the FLAIR-derived Otsu whole tumour mask, yielding an automated ET region confined within the tumour boundary (ET×FLAIR ROI). A strict inclusion criterion of Dice similarity coefficient ≥ 0.5 between the automated ET×FLAIR ROI and the expert ET annotation was applied, yielding 96 samples (65 patients; 86 progression, 10 non-progression). Radiomic features were extracted from T1c images within both the automated ET×FLAIR ROI and expert ET masks (TumorMask ET Label-3) using PyRadiomics [7]. Following correlation filtering and LASSO feature selection [8], Logistic Regression (LR), Linear SVM, and Random Forest (RF) were evaluated on a stratified 70/30 held-out test set with 5-fold cross-validation.

Expert ET masks substantially outperformed automated ET×FLAIR ROI masks on the test set (AUC: LR=0.73, SVM=0.73, RF=0.76 vs. LR=0.47, SVM=0.47, RF=0.41). Precision-recall analysis further confirmed this gap, with Expert ET achieving average precision (AP) of 0.953–0.956 versus 0.872–0.889 for ET×FLAIR ROI — a particularly meaningful distinction given the class imbalance. Matthew's Correlation Coefficient (MCC) for ET×FLAIR models ranged from −0.259 to 0.000, indicating performance at or below chance, compared to 0.000–0.114 for expert ET models. Expert ET masks required only 5 LASSO-selected features versus 20 for ET×FLAIR ROI. RF on expert ET achieved the best overall test performance (AUC=0.76, Sensitivity=0.86, Specificity=0.25, F1=0.86).

The large AUC and AP gaps confirm that T1c subtraction introduces substantial noise into the ET region, diluting discriminative radiomic information. Negative MCC values for ET×FLAIR models indicate that automated mask-derived classifiers perform worse than a naive baseline, likely due to spurious enhancement from non-tumour tissue contaminating the mask. Limitations include extreme class imbalance (86 vs. 10 non-progression cases), a small single-institution cohort, and the inherent sensitivity of image subtraction to inter-scan registration errors and intensity normalisation inconsistencies — factors shown to significantly impact radiomic feature reproducibility and model performance in glioma [9]. Future work should investigate other automated ET segmentation pipelines — including BraTS-trained deep learning models [3] and registration-corrected subtraction approaches — to improve mask fidelity prior to feature extraction.

Automated ET extraction via T1c subtraction and FLAIR masking is insufficient as a standalone approach for radiomic glioma progression classification, with models yielding near-chance or below-chance discrimination. Expert-level ET annotation remains critical for reliable performance. Future directions include systematic benchmarking of automated ET segmentation pipelines, robust intensity normalisation, registration correction, and class rebalancing to enable annotation-independent radiomic workflows for post-treatment glioma monitoring.
Akashleena CHATTERJEE (Vienna, Austria) , Matthias BLAICKNER
16:15 - 17:00 #54381 - P400 Non-invasive glioma grading through biophysical diffusion MRI modelling:the complementary role of Histo-μSim and SANDI.
P400 Non-invasive glioma grading through biophysical diffusion MRI modelling:the complementary role of Histo-μSim and SANDI.

Diffuse glioma grading is critical for determining prognosis and therapy, but definitive classification still requires an invasive neurosurgical biopsy. Recent diffusion MRI (dMRI) methods provide a non-invasive window into tissue microstructure, and may therefore reveal tumour features for fully automated and non-invasive grading [1,2]. Innovative biophysical models such as Soma and Neurite Density Imaging (SANDI)[3] or Histo-μSim (a histology-aware, simulation-informed cancer dMRI method)[4] disentangle specific microstructural features underlying radiological patterns in dMRI, e.g., cellular density and morphology, which are indicative of tumour grade. This study compares the discriminative power of these promising methods in differentiating low-grade (LGG) from high-grade gliomas (HGG), assessing their utility as non-invasive biomarkers in a pilot cohort.

Acquisition and Pre-processing: MR images from ten patients with histology-confirmed glioma (LGG vs HGG, WHO criteria) were used from a public diffusion-relaxation MRI (drMRI) data set [5]. Data were acquired on a 3T Philips scanner (80 mT/m gradient) using a multi-shell, multi-echo sequence (b values up to 3200 s/mm2, TE 75–135 ms) (Table 1) and released after standard pre-processing. Tumour core and peritumoral abnormality regions-of-interest (ROIs) were manually segmented on T1 and T2-FLAIR images, and warped to diffusion. Model fitting: Microstructural estimates were derived from direction-averaged signals to ensure orientation-invariance, normalising each (b,TE) shell to the corresponding b = 0 image, thus minimizing the effect of TE changes. Two distinct models were fitted: SANDI, providing metrics of neurite and soma fraction (Fneurite, Fsoma), apparent soma radius (Rsoma) and extra-cellular apparent diffusion coefficient Dex; and Histo-μSim, providing metrics of cell size mean/variance (mCS, varCS), intra-cellular fraction (Fintra) and total cellularity. Both models were fitted through non-linear least square procedures with L2 regularization, testing three regularization levels (λ=0.0025,0.005,0.01) to assess stability. Statistical analysis: Mean, median and interquartile range (IQR) of each metric were extracted within both tumour core and peritumoral ROIs. Grade differentiation (LGG vs HGG) was assessed via Mann-Whitney U tests and Cohen’s d effect sizes. Diagnostic accuracy was quantified using AUC with Leave-One-Out Cross-Validation (LOOCV).

SANDI metrics exhibited higher stability across λ values compared to Histo-μSim (Fig.1). Fig. 2 shows examples of SANDI and Histo-μSim metrics in a LGG and HGG case, with corresponding histology. The discriminative ability of SANDI/Histo-μSim parameters varied considerably between regions, with heterogeneity metrics (e.g., IQR) outperforming ROI-based mean values in LGG vs HGG grading. In the tumour core, Histo-μSim cellularity IQR emerged as the most effective biomarker, achieving an AUC of 0.917 and a large Cohen’s d = (2.39, p<0.0095) at λ=0.01 (Fig.3). This metric also showed a strong rank correlation with tumour grade (Spearman's ρ = 0.9439, p < 0.001). In contrast, SANDI soma-based parameters within the core (e.g Dex) were not significant (p > 0.05). Notably, in the peritumoral area, SANDI Fneurite demonstrated high discriminative potential with an AUC of 0.867 (d = -2.63, p = 0.0357) (Fig.3). These results indicate that the spatial dispersion of cell density, as estimated via the standard Histo-μSim framework, provides a more robust separation between LGG and HGG than soma-based metrics.

The IQR of Histo-μSim cellularity in the tumour core suggests that spatial heterogeneity is a more sensitive indicator of malignancy than average tissue properties, capturing spatial disorganization of high-grade lesions, where focal hypercellularity and necrotic niches coexist, which is often averaged out in standard ROI analysis. In the peritumoral area, SANDI-derived Fneurite showed high discriminative ability but negative correlation with tumour grade. We interpret low peritumoral Fneurite as white matter degradation (demyelination, axonal loss) induced by high grade infiltration, not as neoplastic cellularity. The lack of significant Histo-μSim findings in peritumoral area reinforces its specificity to the solid core, and SANDI’s potential superiority in areas with residual white/grey matter architecture. Together, these results indicate that Histo-μSim and SANDI provide complementary biomarkers for the characterization of the tumour core and peritumoral areas. Given the limited sample size, this study should be regarded as an exploratory proof-of-concept.

Despite this limitation, this study demonstrates the potential of dMRI for non-invasive glioma grading, highlighting how different biophysical dMRI models provide complementary microstructural information in complex clinical tasks
Annalisa MONETTA , Athanasios GRIGORIOU , Luz M. ATLAGICH , Raquel PEREZ-LOPEZ , Francesco GRUSSU (Barcelona, Spain)
16:15 - 17:00 #54464 - P401 Fluid-suppressed QTI unmasks isotropic diffusivity variance in high-grade glioma: initial results.
P401 Fluid-suppressed QTI unmasks isotropic diffusivity variance in high-grade glioma: initial results.

High-grade gliomas infiltrate beyond contrast enhancement into peritumoral tissue, where edema, reactive change, and tumor may overlap. Current imaging methods cannot reliably separate these tissue contributions. Compared with routine DTI, q-space trajectory imaging (QTI) [1] better separates microscopic anisotropy, orientation coherence, and isotropic diffusivity variance (V_MD). V_MD reflects variance in the diffusivities of compartments within a voxel – making it a plausible marker for lesion heterogeneity. Yet Klint et al. reported no significant changes in high-grade glioma biopsy volumes: neither in V_MD nor in its companion C_MD = V_MD/(V_MD+MD^2), which is normalized by the voxel mean diffusivity (MD) [2]. However, we recently showed that conventional C_MD mainly tracks tissue-fluid partial volumes (PVs): fluid suppression by inversion recovery (IR) reduced gray matter C_MD by 33% in a cohort of healthy volunteers [3]. This motivated us to explore isotropic diffusivity variance in brain tumors with IR-QTI. Here, we report initial results in a high-grade glioma patient.

With IRB approval and written informed consent, one high-grade glioma patient underwent conventional and IR-QTI at 3T before treatment, using identical tensor-valued diffusion encoding [3] and readout parameters, with IR preparation applied only in the second acquisition (Tab. 1). Diffusion data were denoised, corrected for Rician bias, Gibbs ringing, distortion and motion, and fitted with QTI SDPdcm± (MD_max=3.1 µm^2/ms) [4-9]. IR-QTI volumes were rigidly registered to the non-IR reference using b=0 s/mm^2 images. We used coregistered FLAIR and contrast-enhanced MPRAGE (ceT1) images to manually segment four ROIs on the reference b=0: contrast-enhancing tumor rim, non-enhancing FLAIR-hyperintense lesion, contralateral normal-appearing white matter (WM) and cortical gray matter (GM) control (Fig. 1). Low-SNR voxels were excluded from the images, maps and ROIs by use of a threshold mask on the IR b=0 image. We then compared V_MD, C_MD and MD obtained from conventional QTI versus IR-QTI using descriptive statistics.

First, IR reduced V_MD at tissue-fluid boundaries in normal-appearing tissue (see maps in Figs. 1,2). The effect was strongest in the GM control ROI: median V_MD fell from 0.50 to 0.04 µm^4/ms^2 (-92%) and the voxel distribution collapsed toward zero (Fig. 3). In thin cortical GM, tissue (slow) and free fluid (fast-diffusing) volumes mix in single voxels, producing high V_MD. Fluid-suppression therefore drives isotropic variance toward zero [3]. Consistent with lower fluid contamination, the WM control changed little in absolute terms (0.11 to 0.08 µm^4/ms^2). Second, and most crucially, the non-enhancing lesion alone showed increasing V_MD, from 0.37 to 0.48 µm^4/ms^2 (+30%). IR V_MD maps show strong lesion contrast and appear more heterogeneous in the non-enhancing lesion than the FLAIR and ceT1 images (Fig. 1). Quantitatively, the non-enhancing lesion-to-control median ratio increased 1.8-fold relative to WM and 16.2-fold relative to GM for V_MD (Fig. 3). Corresponding gains were smaller for C_MD (1.5- and 5.8-fold) and MD (constant and 1.9-fold). Lastly, MD decreased after IR across ROIs, and C_MD followed the V_MD trend, except in the enhancing rim around the focal edema. Here, V_MD fell from 0.61 to 0.47 µm^4/ms^2 (-23%), consistent with PV reduction, whereas C_MD rose from 0.13 to 0.15 (+15%): the larger MD drop drove the normalized C_MD ratio upward. This opposite behavior is clearly visible on the difference maps and distribution plots (Figs. 2,3).

IR-QTI produced divergent V_MD responses in tumor-associated and normal-appearing tissue. While the control ROIs behaved as expected from PV removal, the non-enhancing lesion showed a marked V_MD rise, even though MD decreased as in the other ROIs. The observed V_MD elevation may therefore reflect tissue-intrinsic heterogeneity that is masked by the more homogeneous free-fluid pool in conventional QTI. Further, the IR V_MD map appeared more heterogeneous than FLAIR in the tumor periphery, which suggests increased sensitivity to tissue complexity from tumor infiltration, edema and reactive change. While IR V_MD made the entire lesion more conspicuous, this single-case observation lacks regional histology and cannot establish tumor specificity. Lastly, C_MD provided less direct contrast: falling MD can preserve or increase C_MD, as seen in the enhancing rim.

In this high-grade glioma case, IR V_MD showed strong lesion-associated contrast, particularly in the non-enhancing region. Overall, this first report may motivate further studies of IR-prepared V_MD, potentially for investigating reactive changes and tumor infiltration in such lesions. Finally, we note that isotropic variance can be measured without fitting the full covariance tensor, which can significantly shorten acquisition time [10].
Oliver GÖDICKE (Heidelberg, Germany) , Obada T. ALHALABI , Mirija C. CLASS , Jinyang YU , Annika HOFMANN , Frederik B. LAUN , Yeong Chul YUN , Mark E. LADD , Sandro M. KRIEG , Bogdana SUCHORSKA , Johann M. E. JENDE , Tristan A. KUDER
16:15 - 17:00 #54669 - P402 DTI-ALPS fails to predict overall survival in high-grade glioma beyond extent of resection and MGMT methylation.
P402 DTI-ALPS fails to predict overall survival in high-grade glioma beyond extent of resection and MGMT methylation.

The glymphatic system, a network involved in the removal of metabolic waste in the brain, has been proposed to play a role in neuroinflammation and immunosurveillance, rendering it a potentially relevant contributor to the tumor microenvironment in high-grade glioma (HGG)[1]. Diffusion tensor imaging analysis along the perivascular space (DTI-ALPS) enables non-invasive assessment of glymphatic intergrity [2], but its prognostic relevance in HGG remains uncertain. This study evaluated ALPS-derived glymphatic metrics in patients with WHO grade 4 glioma and examined their relationship with established prognostic markers and overall survival.

In this retrospective single-center study, 50 patients (27 female; 65.5 ± 17 years) undergoing surgical treatment for unifocal WHO grade 4 glioma between 2016 and 2025 with available preoperative diffusion tensor imaging as well as 50 age- and sex-matched healthy controls were included. For anatomical images, standard T1-weighted MPRAGE sequences were performed. In HGG patients additional axial Flair and contrast-enhanced T1 MPRAGE sequences were acquired. Diffusion-weighted images were acquired with 60 - 64 directions, b-values of 0 and 1000 s/mm² and phase encoding in A-P direction. ALPS indices were calculated bilaterally and associations between ALPS index, clinical and molecular characteristics, extent of resection, and overall survival were analyzed using Spearman´s correlation analysis. Survival was analyzed using Cox regression and Kaplan-Meier analysis.

Mean ipsilateral ALPS index values were significantly lower in HGG patients compared with healthy controls (1.10 vs. 1.27, p < 0.001) and compared with the contralateral hemisphere (1.10 vs. 1.21, p = 0.01), while contralateral ALPS index values did not differ significantly from controls (1.21 vs. 1.27, p = 0.45). ALPS index correlated with age, but no significant associations were observed with tumor volume, edema volume, or most clinical performance measures. Multivariate Cox regression showed no association between overall survival and ALPS indices (ipsilateral HR 2.41 p = 0.29, contralateral HR 0.53 p = 0.47). Instead, significant associations were found for male sex (HR 0.22 p < 0.001), age (HR 1.05 p = 0.02), MGMT methylation (HR 0.33 p = 0.02) and extent of resection (HR 0.36 p = 0.01).

The findings suggest localized alterations of perivascular diffusion in HGG, predominantly within the tumor-bearing hemisphere, supporting prior observations of potentially impaired glymphatic function in glioblastoma. However, the absence of prognostic significance after adjustment for established clinical and molecular markers raises questions regarding the specificity of the ALPS index in infiltrative brain tumors. Tumor-associated edema, white matter disruption, and microstructural changes may substantially influence diffusion-based measurements and limit interpretation of the ALPS index as a direct surrogate of glymphatic integrity in HGG.

Glymphatic function as assessed via DTI-ALPS is reduced in the presence of high-grade glioma but showed no association with overall survival. Established survival predictors such as MGMT methylation status and extent of resection remain independent prognostic factors. Further work is needed to elucidate the mechanistic interactions between high-grade glioma and glymphatic dysfunction.
Sascha D. SANTANIELLO (Mainz, Germany) , Leon SCHMIDT , Andrea KRONFELD , Marc A. BROCKMANN , Ahmed E. OTHMAN
16:15 - 17:00 #54572 - P403 Can Uncertainty Quantification Improve Trust in AI-assisted Clinical Decision-making? A Case Study in MRI-based Glioma Subtyping.
P403 Can Uncertainty Quantification Improve Trust in AI-assisted Clinical Decision-making? A Case Study in MRI-based Glioma Subtyping.

The rapid advancement of AI has demonstrated its utility across a wide range of applications and enabled its integration into many technologies used in daily life. Despite this progress, a significant gap remains between the development of AI methods and their effective deployment in clinical practice. Due to the black-box nature of many AI models, clinicians may be reluctant to adopt them, particularly in medical settings where the rationale behind predictions is often unclear and errors can have serious consequences for patient care and treatment decisions. In this work, we investigate whether uncertainty quantification can improve trust in AI-assisted clinical decision-making. We focus on MRI-based glioma subtyping, using an AI model to predict clinically relevant molecular and histopathological features, including IDH mutation status, 1p19q co-deletion status, and tumor grade. These biomarkers are central to glioma classification and play an important role in guiding treatment strategies.

We developed a multi-task deep learning model to predict IDH mutation status, 1p19q co-deletion status, and tumor grade from pre-operative structural MRI, including T1w, T1wCE, T2w, and FLAIR sequences [1] (Figure 1). The network uses a U-Net-like backbone [2] for multi-scale feature extraction, followed by a fully connected classification head to produce predictions for each task: IDH (mutated vs wildtype), 1p19q (co-deleted vs intact), and grade (2, 3, or 4), alongside an auxiliary tumor segmentation output. The model was trained for 100 epochs using the Adam optimizer [3] with a joint multi-task loss, where task weights were inversely proportional to data availability. Classification losses used masked categorical cross-entropy to handle missing labels, while segmentation used Dice loss. Uncertainty was estimated using Monte Carlo Dropout (30 forward passes, dropout rate 0.25), previously shown to produce well-calibrated predictions [4]. Building on this, we introduced a segmentation-informed trust score to quantify prediction reliability. We evaluate this framework on an external dataset of 464 glioma patients [5,6], assessing whether the trust score can discriminate between correct and incorrect predictions for IDH, 1p19q, and tumor grade.

Figure 2 presents the results of the prospective validation study using violin plots of trust scores for correctly (green) and incorrectly (red) classified cases across the three tasks (IDH, 1p19q, and tumor grade). The distributions show significant differences between correct and incorrect predictions in all tasks according to the Mann–Whitney U test. For IDH, correctly classified cases are concentrated at high trust scores close to 1, while incorrect cases show a broader distribution with peaks around 0.4 and a smaller cluster near 0.8. The separation is most pronounced for 1p19q, where correct predictions are strongly concentrated near 1 and incorrect predictions are mainly found at low trust scores (~0.2). In contrast, tumor grade shows more overlap, with correct cases centered around ~0.6 and incorrect cases around ~0.3, both with higher variability.

Although the proposed trust score differs significantly between correctly and incorrectly classified cases and is generally higher for correct predictions across all tasks, there are still instances where this relationship does not hold. A small number of incorrect predictions are associated with high trust scores, and some correct predictions show low trust scores, which limits the ability of the metric to fully separate reliable from unreliable cases. This behavior may be partly explained by task-specific and dataset-related challenges. In particular, limited generalization across this multi-institutional dataset, with heterogeneous MRI acquisition protocols, may affect consistency. In addition, intrinsic task difficulty likely contributes, especially for tumor grading, where distinguishing between lower-grade tumors (grades 2 and 3) remains challenging even for experts. Future work will focus on improving trust score calibration and enhancing its robustness for reliable clinical decision support.

We performed a prospective validation of an AI framework for predicting IDH mutation status, 1p19q co-deletion status, and tumor grade from pre-operative MRI. In prior work, we introduced MC Dropout-based uncertainty estimation and derived a trust score that showed good calibration and discrimination of prediction correctness. We evaluated the framework on a prospective cohort of 464 patients and found that these properties are largely preserved. However, the partial overlap between trust score distributions for correct and incorrect cases limits its ability to fully distinguish incorrect predictions. Future work will focus on improving robustness of the trust score. Overall, these are promising results that represent a step toward developing a score that improves reliability in AI-assisted clinical decision-making for glioma subtyping.
Gonzalo Esteban MOSQUERA ROJAS (Rotterdam, The Netherlands) , Sebastian R. VAN DER VOORT , Sandeep KAUSHIK , Carolin PIRKL , Marion SMITS , Stefan KLEIN
16:15 - 17:00 #54555 - P404 Openly accessible datasets for brain tumour imaging science (OADIS-BT): an inventory of publicly available MRI datasets.
P404 Openly accessible datasets for brain tumour imaging science (OADIS-BT): an inventory of publicly available MRI datasets.

Publicly accessible MRI datasets are a highly valuable resource for brain tumour imaging research and computational methods development. Although numerous datasets are theoretically available, they remain dispersed across repositories, publications, and institutional platforms, making utilisation and direct comparison challenging. Existing reviews have largely focused on adult glioma datasets and do not provide a comprehensive inventory across different brain tumour types. This study aimed to identify and catalogue publicly available brain tumour MRI datasets worldwide and provide a structured overview of their characteristics, accessibility, and imaging content.

A structured search strategy was developed using PubMed and supplementary web-based searches of publicly accessible imaging repositories and institutional platforms. Datasets involving brain tumour MRI imaging were screened for eligibility using systematic review protocols. Data extracted included tumour type, histomolecular data, population age distribution, imaging modalities and timepoints, availability of DICOM images, annotation types, segmentation availability, user access requirements, and associated manuscript publications.

Forty-three distinct datasets covering glioma subtypes, glioblastoma, paediatric brain tumours, meningioma, and brain metastases were identified. Repositories include TCIA, Synapse, CBICA, and numerous institutional databases. Significant heterogeneity was observed in dataset structure, MRI protocols, annotation availability, preprocessing methods, and to a lesser extent in data formats (with all including DICOM and/or NIfTI). Overlap between BraTS and TCIA-derived collections was identified.

The findings demonstrate substantial variability across publicly available brain tumour MRI datasets in terms of imaging protocols, annotation quality, preprocessing pipelines, accessibility, and molecular classification reporting. This heterogeneity may affect reproducibility, external validation, and dataset selection for AI research, highlighting the need for improved standardisation and transparent metadata reporting.

OADIS-BT provides a comprehensive inventory of publicly available brain tumour MRI datasets to support imaging research, including external validation. The data catalogue highlights scientific strengths together with current gaps in standardisation, metadata reporting and chronological lag behind molecular classification. As a live resource it can facilitate dataset selection, serve reproducibility studies, and enhance future collaborative imaging research.
Leila HOMAYOUN (Nottingham, United Kingdom) , Stephan HEUNIS , Esther WARNERT , Stefanie THUST
16:15 - 17:00 #54356 - P405 Incomplete reversibility of fixation-induced changes in postmortem human brain white matter MRI following rehydration.
P405 Incomplete reversibility of fixation-induced changes in postmortem human brain white matter MRI following rehydration.

Validation of in vivo MRI biomarkers for neurodegenerative diseases commonly relies on formalin-fixed ex situ imaging and subsequent histology. However, fixation-induced effects on MRI-derived measures remain insufficiently characterized, particularly regarding relaxation properties and tissue anisotropy1–4. While rehydration has been reported to partially reverse these alterations, formalin-induced protein cross-linking suggests incomplete reversibility4,5. This study systematically investigates the impact of formalin fixation and rehydration on MRI-derived measures in human brain white matter by comparing postmortem (PM) in situ, PM ex situ fixed, and PM ex situ rehydrated whole brains.

Two human brains were examined PM using a Siemens MAGNETOM Prisma 3T system with a 20-channel head and neck coil (Siemens Healthineers, Erlangen Germany). Following extraction, whole brains were fixed in formalin containing 4.5% formaldehyde (acid-free, phosphate-buffered, Roti-Histofix 4.5%, Carl Roth, Karlsruhe, Germany) for three months and subsequently rehydrated in PBS (524650 PBS Tablets, Merck KGaA, Darmstadt, Germany) for nine days. The PBS solution was changed at two timepoints (t = 48 h, 144 h). MRI was repeated after fixation and after rehydration. For ex situ imaging, whole brains were placed in an acrylic glass container, stabilized using custom-made 3D-printed support plates, and immersed in a proton-free and tissue susceptibility-matched fluid (Fig. 1). The imaging protocol included MP2RAGE for structural segmentation, multi-echo gradient-echo sequences for R2* mapping (12 TEs), and multi-shell DTI MRI (b = 0, 1000, 2000, 3000 s/mm²). Data analysis included skull stripping (HD-BET6), segmentation (FSL FAST7–10), eddy currect correction (FSL eddy_correct7–9) and FSL DTIFIT7–9. Using the DTI MRI data, mean diffusivity (MD), fractional anisotropy (FA), axial diffusivity (AD = λ1) and radial diffusivity (RD = (λ2 + λ3) / 2) were calculated. The principal eigenvector of the diffusion tensor was further used to calculate the nerve fiber angle. Fiber orientations were divided into 18 intervals of 5° each, covering the range from 0° to 90° (perpendicular to B0). To assess the R2* orientation sensitivity, we calculated the anisotropy index (AI) for R2*: AI=((R_2^(* max)-R_2^(* min)))⁄((R_2^(* max)+R_2^(* min)))

Formalin fixation altered MRI-derived microstructural measures in human WM, with partial changes after rehydration (Table 1, Fig. 2). FA, MD, AD, and RD decreased after fixation. Following rehydration, FA decreased further, whereas MD, AD, and RD increased, with RD trending above in situ levels. Averaged R2* increased after fixation and returned close to in situ values after rehydration. The AI was reduced strongly after fixation and showed only partial recovery after rehydration, remaining below in situ levels. The reduced AI is also observable in Figure 2, where normalized R2* values are plotted against the calculated nerve fiber angle. In situ measurements show the strongest angular dependence, whereas it is nearly absent in the formalin-fixed tissue. Minimal orientation dependence reappears after rehydration.

Formalin fixation induces systematic alterations in MRI-derived measures, affecting the diffusion metrics and R2*. Our results show reduced diffusivity and fractional anisotropy values, as well as reduced orientation dependency of R2* after fixation, likely reflecting the effects of protein cross-linking. Rehydration with PBS lead to only partial recovery of MD, AD, AI and R2*. Following rehydration, FA remained further reduced compared to both in situ and ex situ formalin fixed values, whereas RD increased to levels exceeding those observed in situ. On the one hand, these findings support the presence of both reversible and irreversible fixation effects, while disproving the assumption that all fixation effects can be reversed through rehydration. Despite these partial recoveries, diffusion metrics and R2* orientation dependence remain incompletely restored. Changes of values may partly reflect pseudo-recovery driven by osmotic shifts and altered water distribution. These effects must be considered when using PM MRI of fixed tissues to validate in vivo biomarkers, particularly in studies linking imaging findings to histology.

Fixation and rehydration substantially alter MRI-derived measures in human brain white matter, limiting direct comparability across different tissue states. Rehydration partially restores fixation-induced changes in diffusion metrics, whereas orientation dependent R2* measures remain largely unaffected. Overall, fixation and rehydration reflect heterogeneous and only partially reversible effects on the tissue, complicating the interpretation of PM MRI data, particularly when comparing in vivo and ex situ measurements or when using ex situ findings for biomarker validation.
Lennart BEDARF (Basel, Switzerland) , Dominique NEUHAUS , Eva SCHEURER , Claudia LENZ
16:15 - 17:00 #54322 - P406 Forehead-based temperature correction of postmortem FLAIR MRI.
P406 Forehead-based temperature correction of postmortem FLAIR MRI.

Fluid-attenuated inversion recovery (FLAIR) is a valuable tool for neuropathological assessments in postmortem MRI. FLAIR suppresses cerebrospinal fluid (CSF) signal using an optimal null inversion time (TI0) [1]. However, in postmortem MRI, specimen temperature varies widely, affecting T1 and thus altering TI0 [1–4]. Temperature correction of TI0 is therefore essential to improve reliability and interpretability of postmortem FLAIR acquisitions. The aim of this project was to develop a temperature correction model for TI0 based on non-invasive forehead temperature measurements, enabling real-time and practical CSF suppression in postmortem imaging.

All procedures conducted in this study complied with the applicable national ethical guidelines and regulations (EKNZ project ID 2017-02117). Seven postmortem cases without known neurological disorders underwent in-situ whole-brain MRI at 3T. The cohort characteristics are summarised in Table 1. For each case, multiple FLAIR acquisitions with a voxel size of 1x1x4 mm3, TR = 15000 ms, TE = 81 ms, number of slices 40, spacing between slices of 4.4 mm and echo train length of 20 were obtained with varying TIs ranging from 800-2800 ms. Non-invasive forehead temperature was continuously assessed during the scans. The mean temperature during the FLAIR sequences was used for subsequent analyses. Following brain extraction using FSL-BET [5], FSL-FAST [6] was employed to segment the CSF. The mean CSF FLAIR signals and the different TIs were used to fit the optimal TI0 based on an exponential magnitude-corrected inversion recovery model. Regression analysis using ordinary least squares (OLS) was subsequently performed to assess the correlation between these TI0 values and the mean forehead temperatures. 95 % confidence intervals were determined, and coefficients of determination (R2) were used to evaluate the goodness of fits. Additionally, Pearson’s p-value was assessed, and the Pearson correlation coefficient (r) was used to evaluate the strength and direction of the linear relationship between TI0 and temperature. The resulting linear equation was applied to an additional postmortem case to temperature-correct the TI0 value, thereby assessing the accuracy of CSF signal attenuation.

The fitted inversion recovery model curves reproduced the characteristic signal inversion and recovery behaviour expected for CSF and provided a good agreement with the measured CSF signal intensities (see Figure 1). The estimated TI0 values ranged from 980 ms to 1210 ms. The linear regression analysis between forehead temperature and estimated TI0 values suggested a moderate positive association (r = 0.50) with a p-value of 0.25 and an R2 of 0.25 (see Figure 2). The OLS fitting yielded the following association between TI0 and temperature: TI0 = 895.8 ± 136.7 ms + (11.9 ± 9.2) ms/°C⋅T. Applying the derived formula to temperature-correct TI0 in an additional postmortem case enabled a successful suppression of the CSF signal (see Figure 3).

The fitted inversion recovery model provided a good agreement with the measured CSF signal intensities across varying TIs. While Tofts et al. [1] report higher TI0 values (1600 to 2000 ms), Bruguier et al. [4] (1100 to 1275 ms) and Berger et al. [3] (1200 to 1400 ms and 1190 to 1210 ms) found values in a similar range. Direct comparability is limited by methodological differences, but the TI0 values derived in this study appear to fall within a reasonable range. The OLS analysis showed a positive correlation (r = 0.5) between TI0 and forehead temperature. The results are consistent with previous studies, which equally demonstrated that TI0 positively correlates with temperature [1–4]. However, the moderate coefficient of determination (R2 = 0.25) and high p-value (p = 0.25) suggest that additional factors such as decomposition states may influence TI0. Additionally, the use of forehead temperature as a proxy for intracranial temperature, the small sample size, and the narrow temperature range between cases may have contributed to the observed variability. Forehead temperature serves as a practical and non-invasive approximation but might not perfectly reflect brain temperature [11]. However, forehead temperature could be measured during the MRI scan, whereas rectal and brain temperatures can typically only be assessed before or after scanning, which may introduce a larger systematic bias [2–4]. Importantly, applying the derived temperature correction model proved reliable in an additional case, where the CSF signal was successfully suppressed.

While future studies with larger sample sizes and additional covariates could refine the model, the current findings demonstrate that non-invasive, real-time TI0 correction via forehead temperature is feasible, improving the reliability of postmortem FLAIR acquisitions. To facilitate implementation, an online temperature correction calculator for TI0 is available: https://domineuq.github.io/flair-temperature-correction/.
Dominique NEUHAUS (Basel, Switzerland) , Thomas STOCKER , Eva SCHEURER , Claudia LENZ
16:15 - 17:00 #54424 - P407 Ventricular Cerebrospinal Fluid as an Internal Thermometer in Post-Mortem MRI.
P407 Ventricular Cerebrospinal Fluid as an Internal Thermometer in Post-Mortem MRI.

T1 relaxation is highly temperature-dependent, representing a critical factor in post-mortem MRI [1]. According to the Fast Exchange Two-State (FETS) model, the T1-temperature dependency is approximately linear over narrow temperature ranges [2], [3], [4], [5]. However, extracting reliable temperatures from MRI datasets remains challenging [6], [7], as passive environmental equilibration and active radiofrequency (RF) energy deposition dynamically alter the body's thermal state during prolonged acquisitions [8], [9]. While these thermal effects may induce complex, localized variations across different intracranial compartments, we hypothesize that the thermally well-isolated fluid ventricular cerebrospinal fluid (CSF) might act as a more uniform tracking compartment compared to solid brain parenchyma. Consequently, this study investigates whether CSF T1 can serve as an internal temperature reference.

The study protocol was approved by the local ethics committee. Twelve post-mortem brains were scanned in situ at 3T at room temperature, following 4°C cooling. Exclusion criteria included a history of traumatic brain injury or neurological disease. The mean post-mortem interval (PMI) was 35.9 ± 15.7 hours (maximum: 72 hours). Baseline core temperatures were recorded immediately after extraction from the cooling chamber, prior to scanner transport. T1 mapping (2D IR-TSE; TR/TE = 8000/8.5 ms, 7 TIs = 100-3000 ms, voxel size = 1x1x4 mm³, acquisition time = 9 min 36 s) was performed both at the beginning (T1-start) and at the end (T1-end) of a comprehensive 5-hour MRI protocol. T1 maps were generated using a 3-parameter exponential fit. Linear regression models were performed to evaluate the correlation between pre-scan core temperatures and averaged T1 values extracted from manually delineated ROIs across the lateral ventricles and solid tissues, specifically the white matter, cortex, and basal ganglia (globus pallidus, putamen, and caudate nucleus).

T1-temperature correlations across all brain regions at both early (T1-start) and late (T1-end) acquisitions is presented in Table 1. In white and gray matter, correlations between T1 and initial core temperatures were not significant in all regions except a borderline significance for the caudate nucleus. In ventricular CSF, the linear correlation between T1 and initial core temperatures was highly significant at both the early scan (r = 0.83) and the late scan (r = 0.92) (Figure 1). Concurrently, CSF T1 values exhibited a consistent relative increase across subjects (ranging from +3.3% to +26.1%, mean 15.2 ± 6.8%), shown in Figure 2.

To our knowledge, this study demonstrates for the first time systematically in postmortem human subjects that ventricular CSF T1 reliably tracks brain temperature, serving as an internal thermal reference. First, our data illustrates the thermal complexities of post-mortem MRI. Solid brain tissue lacked correlations with baseline rectal temperature measurements. We attribute this to spatially inhomogeneous heating, driven by passive equilibration towards room temperature and active RF energy deposition (SAR) [8], [9]. Although continuous heat absorption caused an increase in CSF T1 during scanning, the CSF maintained a strong correlation with baseline core temperatures throughout. This intrinsic stability under controlled cooling conditions [10] allows to derive baseline core temperatures directly from CSF T1 values, possibly providing a tool for PMI estimation. Future studies will investigate this T1-temperature relationship to validate its forensic utility.

Ventricular CSF T1 showed a strong correlation with core body temperature, suggesting it could serve as an internal thermometer. While RF heating and passive equilibration decouple solid tissue T1 from actual thermal states, the CSF remains a consistent thermodynamic proxy. Consequently, CSF T1 potentially enables the retrospective investigation of subjects' thermal history, and post-mortem forensic PMI estimation.
Anna CAPPONI (Graz, Austria) , Nikolaus KREBS , Jonathan SCHARFF NIELSEN , Luca ZAMPIERI , Walter GOESSLER , Eva SCHEURER , Kathrin YEN , Stefan ROPELE , Alessandra BERTOLDO , Christian LANGKAMMER
Palau Sira
17:00 POSTER DRINKS
Saturday 03 October
08:15

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B30
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FT1-3 - Imaging for All

FT Society
08:15 - 08:35 Making MRI Accessible: The Open Source Way. Julia PFITZER (University Assistant) (Keynote Speaker, Graz, Austria)
08:35 - 08:55 Mobile Scanners, New Possibilities. Joseba ALONSO (Lead scientist) (Keynote Speaker, Valencia, Spain)
08:55 - 09:15 When Clinicians Go Open Source: Opportunities, Pitfalls, and Responsibility. Iris ASLLANI (Keynote Speaker, Brighton, United Kingdom)
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C30
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FT2-3 - From Molecules to Models
MRI in Precision Medicine

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08:15 - 08:35 Integrating Post-mortem MRI and Histology to Understand Clinical Neuroimaging. Anneke ALKEMADE (Keynote Speaker, The Netherlands)
08:35 - 08:55 Integrating MRI Phenotypes and Multi-omics Data for Patient Stratification. Heidi LYNG (Professor) (Keynote Speaker, Oslo, Norway)
08:55 - 09:15 Patient-specific Cardiac Digital Twins derived from MRI: Toward Personalized Care. Albert DASI (Postdoctoral Research Associate) (Keynote Speaker, London, United Kingdom)
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FT3-3 - If Proton MRI Is Solved, What’s Next?
Non-proton MRI towards 2050

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08:15 - 08:35 Human Non-Proton MRI: Technical and Translational Frontiers. Jeanine PROMPERS (Full professor) (Keynote Speaker, Maastricht, The Netherlands)
08:35 - 08:55 Preclinical Frontiers in Non-Proton MRI. Sonia WAICZIES (PI) (Keynote Speaker, Berlin, Germany)
08:55 - 09:15 Frontiers in Synthetic Biology and Nanotechnology for MRI. Amnon BAR SHIR (Associate Professor) (Keynote Speaker, Rehovot, Israel)
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ET2-2 - Intraoperative MRI
Shaping Current and Future Clinical Practice

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08:15 - 08:35 The MRI Physicist's Perspective. Michael KELLY (Principal Medical Physicist) (Speaker, Dublin, Ireland)
08:35 - 08:55 The MRI Radiographer's Perspective. Yannick ANDERMATT (Speaker, Switzerland)
08:55 - 09:15 The Radiologist's Perspective. Aikaterini FITSIORI (Consultant neuroradiologist) (Speaker, Geneva, Switzerland)
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FT3-1 Plenary - Self-Driving (autonomous)
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09:30 - 10:00 Self-Driving MRI Hardware: Building Autonomous Imaging Systems;. Dennis KLOMP (Keynote Speaker, The Netherlands)
10:00 - 10:30 Self-Learning MRI Software: Towards Autonomous Imaging. Jana HUTTER (Professor of Multi-Modal Signal Processing) (Keynote Speaker, Hannover, Germany)
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OA3-1 Scientific session
The Future of MRI: Autonomous and Personalized Imaging

10:45 - 10:57 #54589 - PG033 Dante: An Open Source Model Pre-Training and Fine-Tuning Tool for the Dafne Federated Framework for Medical Image Segmentation.
PG033 Dante: An Open Source Model Pre-Training and Fine-Tuning Tool for the Dafne Federated Framework for Medical Image Segmentation.

Automated medical image segmentation is increasingly used for quantitative clinical analysis; however, its integration into routine practice is hindered by data scarcity and variations in scanners, protocols, institutions, and annotation practices (1,2). These challenges are particularly significant in MRI, where variability in acquisition can greatly impact model generalization. The Deep Anatomical Federated Network (Dafne) (3) facilitates privacy-preserving collaborative refinement of segmentation models (4) but relies on effective initial models and practical tools for local adaptation. We introduce Dante, an open-source training and fine-tuning module designed to support model pre-training and adaptation within the Dafne ecosystem.

Dante enables training from scratch and fine-tuning of pre-trained segmentation models using data stored in the Dafne-compatible .npz bundle format. The module includes shared preprocessing steps such as foreground cropping, resampling, intensity normalization, and configurable data augmentation. It implements three segmentation architectures: 2D U-Net, 3D U-Net, and DynUNet, the latter of which automatically configures based on dataset characteristics and available GPU memory. For transfer learning, Dante offers two selective fine-tuning strategies: layer freezing with Gradual Unfreezing and convolutional Low-Rank Adaptation (LoRA) (5), applicable to convolutional and transposed-convolutional layers (Figure 2). The framework was evaluated on five publicly available MRI datasets focusing on abdominal multi-organ segmentation and multiple sclerosis lesion segmentation: AMOS (6), CHAOS (7), NIH MRISegmenter (8), MSLesSeg (9), and ISBI 2015 (10). Experiments included training from scratch, same-label domain transfer, few-shot adaptation, and transfer across different segmentation targets. Graphic workflow is summarized in Figure 1.

When trained from scratch on the CHAOS dataset, DynUNet achieved the highest average Dice Similarity Coefficient (DSC), surpassing both 2D U-Net and 3D U-Net. Across various transfer-learning scenarios, fine-tuning with Dante consistently enhanced performance compared to scratch training and expedited convergence. In abdominal MRI adaptation, LoRA and Gradual Unfreezing improved average DSC under limited-data conditions. For models pre-trained on the NIH MRISegmenter dataset and fine-tuned on a 10-patient AMOS subset, LoRA achieved an average DSC of 0.9568, while Gradual Unfreezing reached 0.9555, in contrast to 0.7987 for scratch training. In the multiple sclerosis lesion segmentation case, Gradual Unfreezing attained 85% of its peak performance after one epoch, culminating in a final DSC of 0.849, which exceeded the scratch baseline.

These findings indicate that selective fine-tuning can effectively address domain shifts in medical image segmentation while minimizing the need for annotated local data during adaptation. Gradual Unfreezing facilitated fast and stable convergence, particularly in few-shot scenarios, whereas LoRA provided a parameter-efficient method for adapting convolutional segmentation models without altering all original weights. The quality and anatomical relevance of the pre-training dataset significantly impacted final performance, underscoring the importance of robust global models in federated settings. Dante proved effective for both abdominal organ segmentation and brain lesion segmentation, demonstrating its applicability across diverse anatomical targets and MRI protocols.

Dante offers a configurable, open-source, and Dafne-compatible platform for training and fine-tuning medical image segmentation models. By integrating automated architecture configuration with selective adaptation strategies, Dante enables efficient local model customization in data-scarce and privacy-sensitive clinical research environments. Its incorporation into the Dafne ecosystem may accelerate the deployment of federated segmentation workflows across various institutions.
Giuseppe TIMPANO (Catanzaro, Italy) , Kumari DIBYA , Caligiuri MARIA EUGENIA , Francesco SANTINI
10:57 - 11:09 #54338 - PG034 Exploring virtual contrast enhancement in liver MRI using deep learning.
PG034 Exploring virtual contrast enhancement in liver MRI using deep learning.

Dynamic contrast-enhanced (DCE) MRI of the liver is pivotal for lesion detection and characterization in clinical routine. However, some patients might not qualify for contrast-agent administration due to allergies or renal insufficiency [1, 2]. Recent advances in deep learning have shown the feasibility to generate virtual contrast-enhanced images from non-contrast-enhanced MRI sequences in organs such as the breast or brain [3-5]. In this exploratory study, we investigated whether a generative adversarial network (GAN) can generate visually plausible virtual contrast-enhanced liver MRI from routinely acquired non-contrast-enhanced sequences.

This IRB-approved retrospective monocentric study included 2,326 routine liver MRI examinations from 1213 patients. All examinations were acquired on 1.5T and 3T MRI systems from Siemens Healthineers (Erlangen, Germany) with a multiparametric protocol including diffusion-weighted imaging (DWI) with b-values of 50 and 800 s/mm², T1-weighted in-phase and water-selective sequences, T2-weighted imaging, and dynamic contrast-enhanced T1-weighted sequences with arterial, portal-venous, and delayed phase acquisitions after intravenous application of gadolinium-based contrast agents (GBCA). Datasets were randomly divided into stratified splits on patient level for training (n=1,865), validation (n=223), and test (n=238). A modified pix2pix-based conditional GAN with a U-Net generator was trained for 150 epochs to synthesize virtual contrast-enhanced images [5]. The network input consisted of all non-contrast-enhanced images, while the target output was the corresponding dynamic contrast-enhanced series. Quantitative evaluation was performed using structural similarity index (SSIM), Mean Squared Error (MSE) and peak signal-to-noise ratio (PSNR). For qualitative evaluation, one board-certified radiologist with more than 5 years of experience performed a blinded Turing-test reading of the hold-out test set [6]. Real and generated contrast-enhanced images were presented in random order, and the reader was asked to classify each image as either real or generated. The evaluation was performed on a single representative slice, defined as the middle slice of the liver for each examination.

Quantitative evaluation demonstrated high structural similarity between synthesized and real contrast-enhanced images across all phases (Table 1), with mean SSIM values of 0.837 ± 0.048 (arterial), 0.858 ± 0.040 (portal-venous), and 0.842 ± 0.045 (delayed). Corresponding PSNR values were 27.30 ± 2.48 dB, 27.52 ± 2.51 dB, and 27.56 ± 2.50 dB, respectively. In the blinded reading, the radiologist achieved overall accuracies of 83.8%, 92.9%, and 95.8% for arterial, portal-venous, and delayed phase images, respectively (see Table 1, Figure 1). Sensitivity for detecting generated images increased across phases (72.3% arterial, 89.5% portal-venous, 94.9% delayed), while the specificity for correctly identifying real images remained consistently high (95.4–96.6%).

This exploratory study demonstrates that GAN-based models can technically generate virtual contrast-enhanced liver MRI with good quantitative similarity to acquired images. The quantitative results suggest that relevant anatomical structures and global contrast patterns were preserved across different dynamic phases. The Turing-test evaluation revealed phase-dependent discrimination performance, with lower detection rates for generated images in the arterial phase and increasing accuracy in later phases. This suggests that early contrast dynamics are more reliably reproduced or of higher intra-patient variability in the real images, whereas subtle differences between real and synthesized images become more apparent in the portal-venous and delayed phases. Importantly, the current evaluation primarily reflects the overall visual impression of the generated images rather than lesion-specific contrast enhancement. It therefore remains unclear whether diagnostically relevant features, such as lesion conspicuity and enhancement patterns, might be reliably preserved by a GAN.

This exploratory analysis suggests that virtual contrast enhancement in liver MRI using a GAN can generate synthetic images with a good quantitative similarity to acquired contrast-enhanced images, but not yet full visual indistinguishability for a radiologist assessment. These findings support further investigation of deep learning based virtual contrast enhancement approaches for liver MRI. Such an approach might, while not intended to replace gadolinium-based contrast agents, support diagnostic imaging in patients for whom contrast administration is contraindicated or not feasible. Future studies should include multi-reader evaluations, volumetric analysis, and lesion-level assessment to assess the clinical relevance of virtual contrast enhancement for diagnostic decision-making. Larger studies are needed to assess its clinical applicability.
Luise BROCK (Erlangen, Germany) , Oliver CHAUDRY , Tri-Thien NGUYEN , Lorenz DÖPPMANN , Sindy DANKERT , Lara KRAUSE , Shirin HEIDARIKAHKESH , Aju GEORGE , Julian PFANN HOSSBACH , Hannes SCHREITER , Lorenz A. KAPSNER , Felix TYRACH , Michael UDER , Frederik B. LAUN , Florian KNOLL , Sebastian BICKELHAUPT
11:09 - 11:21 #54675 - PG035 Development of a Pulseq-to-Bruker Interpreter for Enhanced Reproducibility and Rapid Prototyping in Preclinical MRI.
PG035 Development of a Pulseq-to-Bruker Interpreter for Enhanced Reproducibility and Rapid Prototyping in Preclinical MRI.

MRI sequence development is traditionally constrained by vendor-specific environments, which limits the sharing and reproducibility of research. Bruker is the leading manufacturer in the preclinical MRI market; however, since the introduction of the ParaVision 360 (PV360) platform, frequent software updates—often released only a few months apart—have posed significant challenges for the backportability of custom sequences. These rapid release cycles have effectively fragmented the research community, as protocols developed for one version are not easily transferable to others. The open-source Pulseq framework [1] addresses these limitations by providing a hardware-independent format that allows researchers to implement sequences in high-level languages like MATLAB or Python [2], thereby unifying a global community of developers and physicists. This work presents the implementation and validation of a Pulseq interpreter integrated into the PV360 environment to overcome vendor-specific barriers and facilitate reproducible preclinical research.

A Pulseq interpreter was implemented in C and integrated into the ParaVision 360 (V3.5/V3.6) research environment through the development of a custom sequence. This sequence performs runtime parsing of vendor-neutral `.seq` files, converting sequence blocks into the native Bruker Pulse Program (PPG) format (Fig.1). The implementation supports RF pulses, gradient events (including trapezoidal, extended, and arbitrary waveforms), ADC readouts of multiple lengths, and external trigger handling. To validate the interpreter, a 2D Gradient Echo (GRE), Spin-Echo (SE), Turbo-Spin Echo (TSE) and a MP2RAGE [3] sequences were designed using PyPulseq **v1.5.1** and compared to bruker sequences. Sequences were executed on a 7T Bruker scanner. Waveform consistency and timing were verified through simulation-based comparisons with the Pulseq definitions. Additionally a Magnetic Resonance Elastrography (MRE) GRE sequence was developped in order to synchronise the starts of a piezo actuator in conjunction to MRE encoding gradients.

The interpreter successfully loaded Pulseq sequences on the Bruker platform. Similar gradient/RF waveforms and delays were observed on pypulseq plot and Paravision simulator plot (Fig 2). Delays were measured for various events (Fig 3) and shows little deviation (< 10 us) enabling full control over RF transmission, gradient events, and ADC acquisition. Multiple sequences were run without runtime errors and comparisons between the Pulseq-generated GRE and native ParaVision sequences (GRE, SE and TSE), showed comparable performance in terms of image quality. Advanced sequences with complex loop structure and delays like the MP2RAGE and MRE sequences (Fig 4) shows similar image contrast and waves encoded in the phase images which confirmed the correct delays and synchronisation with the ADC.

This work demonstrates the feasibility of executing vendor-neutral MRI sequences within the Bruker ecosystem. By providing a common framework, this interpreter allows researchers to bypass the difficulties of proprietary code and mitigate the impact of frequent ParaVision releases on protocol longevity. While, the current implementation supports all the block events from the version 1.5.1 of pulseq, some specific constraints have to be taken into account while developing a sequence for Bruker like a minimum duration of 700us between two ADCs events or a large number of gradient shapes are not handled correctly. A dedicated python function will be developed to check them. Currently, the main limitation is the impossibility to run large sequences. When the .ppg is approximatively larger than 5 MB, the sequence cannot be loaded by the sequencer due to memory issue which limits the use of 3D acquisitions or advanced sequences. One solution could be to introduce the concept of loops during the conversion from .seq to .ppg using the new TRID flag available in pulseq [4].

We presented the first implementation of a Pulseq-to-Bruker interpreter integrated into the ParaVision environment. The successful execution of a multiple sequences and the acquisition of reconstructible raw data prove the system's viability. This framework establishes a foundation for open-source, cross-platform MRI development in preclinical research, enhancing both transparency and reproducibility.
Pierrick BOUILLOUX , Matthew BUDDE , Nadège CORBIN , Emeline RIBOT , Aurélien J. TROTIER (BORDEAUX)
11:21 - 11:33 #54113 - PG036 Wearable stretchable RF coils for knee imaging in low-field MRI: comparison with standard coils at two operating frequencies.
PG036 Wearable stretchable RF coils for knee imaging in low-field MRI: comparison with standard coils at two operating frequencies.

Despite advantages in portability and reduced system cost, low-field MRI still faces significant challenges related to limited SNR, lower spatial resolution, and longer acquisition times [1–3]. Patient comfort and coil usability also represent important practical constraints, particularly when using rigid extremity coils. Improving RF coil technology is therefore essential to enhance both image quality and usability in these systems. In this context, stretchable and flexible coils have emerged as promising alternatives to conventional rigid designs due to their improved user comfort and better anatomical conformity, which maximizes the filling factor [4]. In this work, we present a wearable and stretchable RF coil for knee imaging and compare it against standard rigid coils in our portable low-field NextMRI [5] and Physio I [6] scanners, operating at 3.52 MHz and 3.04 MHz, respectively.

We fabricated the coil using a fiber-reinforced textile rubber fabric that allows repeated stretching and recovery. We first produced a cylindrical 3D-printed support produced, and we sewed the elastic fabric around it. A second 3D-printed guide defined the wire path, and we manually stitched the Litz wire onto the fabric (Figure 1a). The sinusoidal Litz wire pattern provided both flexibility and stretchability. We designed the wearable stretchable coil (RFStretch) using 1500-strand Litz wire (30 μm strand diameter), with a 23 cm length and adjustable diameter (13–15 cm) to accommodate lower-limb variability while preserving flexibility. The coil has 30 turns as a compromise between RF performance and manufacturability. We compared RFStretch against the rigid coils used in both scanners. Figure 1b summarizes the coil specifications and images. We measured the coil quality factor (Q) using a -7 dB S11 bandwidth criterion and coil efficiency using a B1 amplitude calibration method. We estimated SNR from raw reconstructed images using dedicated noise scans acquired before each acquisition. We computed the noise standard deviation and scaled images into SNR maps. SNR was evaluated globally and in two regions of interest using the raw unfiltered maps. For visualization purposes, display ranges were set using the 99th percentile to reduce outlier influence and SNR maps were smoothed using BM4D filtering [7]. All analysis were performed in both phantom and in vivo using identical sequence parameters for all coils in each scanner. Sequence parameters are summarized in Figure 2.

Figure 3 (Figure 4) shows the efficiency and SNR results for both phantom and in vivo experiments in the NextMRI (Physio I) scanner. SNR values in the tables are normalized to the best-performing coil, which is set to 1.

In NextMRI, RFStretch shows slightly higher efficiency than the most efficient rigid coil in phantom experiments, mainly due to its improved filling factor and closer fit. In vivo, its efficiency becomes comparable to the best rigid coil because coil deformation increases B1 inhomogeneity of RFStretch. SNR results in phantom confirm these trends: RFStretch outperforms rigid coils in most cases, although RFC−Litz slightly outperforms it in region A by around 2%. In vivo, RFStretch only performs slightly worse than RFC-Litz, likely due to deformation effects, but still improves SNR (around 10–20%) compared to larger rigid coils (RFA). This is relevant because, from our experience in clinical studies, RFA (18 cm diameter) is required due to difficulties positioning the injured extremity inside a rigid coil with 15 cm diameter. Regarding results in Physio I, RFStretch benefits from its closer fit to the anatomy, improving efficiency around 3% in phantom and 5% in vivo compared to the best performing rigid coil (RFB-Litz). RFStretch clearly outperforms the other coils in phantom imaging. Performance varies spatially in vivo due to positioning and coil deformation effects, improving in some regions and degrading in others. Despite this, it still achieves the highest SNR in region A and globally. Compared to the large rigid coil RFA, RFStretch provides a substantial in vivo SNR improvement, ranging from 50 to 80% depending on the measured region. Its better performance in Physio I compared to NextMRI may be related to the reduced benefits of Litz wire at higher operating frequencies [3,8,9].

We developed a wearable, stretchable knee coil for low-field MRI that significantly improves patient experience compared to conventional rigid coils, addressing the discomfort and positioning difficulties during knee examinations. By conforming closely to the anatomy and improving the filling factor, RFStretch also provides SNR that is comparable to, and in many cases higher than, that of rigid reference coils. Compared to the large-volume coils typically required for patients, RFStretch offers a meaningful improvement in imaging performance. Future work will focus on optimized fabrication and further improvements in transmit performance.
Jesús CONEJERO (Valencia, Spain) , Marina FERNANDEZ-GARCIA , Jose BORREGUERO , Teresa GUALLART-NAVAL , Pablo MORENO , Eduardo PALLÁS , Fernando GALVE , José Miguel ALGARÍN , Joseba ALONSO
11:33 - 11:45 #54631 - PG037 First Demonstration of Optically Powered, Detuned, and Interrogated MRI Receive Coil.
PG037 First Demonstration of Optically Powered, Detuned, and Interrogated MRI Receive Coil.

Galvanic connections between MRI local receive coils and the scanner interface introduce common-mode currents, RF coupling, and safety constraints that scale unfavorably with channel count and field strength. Each galvanic link in an active MRI coil, namely detuning control, LNA powering, and analog signal transmission, has been replaced optically in prior work [1–7], including our own demonstrations [3,4,5]. In this work, we complete the picture by integrating all three functions into a single optical system, validating the full system in-vivo and showing that image SNR is preserved.

The full optical receive chain is schematically illustrated in Fig. 1. It consists of an optically detuned shielded loop resonator (SLR), an intensity modulated analog optical link, and an optically powered LNA. The SLR is detuned by a combination of photodiode and PIN diode connected between the outer and inner conductor [3]. For initial optical link characterization (Fig. 2), two cascaded commercial LNAs (ZX60-P103LN+) were used. All subsequent measurements used a custom three-stage LNA [5], powered either by battery or by a photovoltaic power converter (PPC) illuminated with an 850 nm laser (RTMDL-852-1W, Roithner, Vienna, Austria). The amplified MR signal intensity-modulated a 1550 nm optical carrier via a Mach–Zehnder modulator (MZM) (LNA2322, Thorlabs). The modulated optical signal was detected by a photodiode connected to the scanner interface. MR measurements were performed at a 3T clinical MRI system (Magnetom Cima.X, Siemens) using 2D FLASH sequence (TR/TE=150/10ms, FA=15°).

Optical link (Galvanic detuning and power delivery) characterization (Fig. 2): A battery powered commercial LNA gain stage and galvanic detuning was used for the initial characterization of the optical data transmission. SNR values across the MZM bias point (Fig2.b) were calculated from MRI phantom images. Maximum signal is obtained exactly at the quadrature bias point. This also coincides with the maximum noise as the sample noise amplified by the gain stage is added to the link noise. However, the maximum SNR is observed close to the null point (~0.1π). At our operating optical power (10mW) this offset gave ≈5% SNR gain over quadrature. At the optimal bias point, in-vivo images acquired with the optical link were compared against a fully galvanic reference (Fig. 2c). Fully optical receive chain (Fig. 3): The gain and NF of the customized LNA stage were measured with a spectrum analyzer and a noise source. Operation at 100 mW optical power delivered to the PPC closely matched battery-powered performance. Phantom SNR measurements across a range of PPC illumination powers confirm that the galvanic reference is already matched at PPPC = 80 mW. SNR maps and line profiles comparing the fully galvanic and fully optical configurations across the 2D slice (Fig. 3a–d) demonstrate that the optical receive chain surpasses the galvanic reference at PPPC > 80 mW. In-vivo imaging with full optical system (Fig. 4): Head images acquired with the fully optical system show anatomical detail and image quality consistent with the galvanic reference acquired in a consecutive session on the same volunteer.

Two findings stand out. First, the SNR-optimal MZM bias deviates from quadrature. Moving the bias point from quadrature toward the null point, the gain initially falls slower than the link noise, consequently producing a minimum-NF bias offset from quadrature. This indicates that a bias search should be a mandatory calibration step for such optical system. Second, an optical power budget of 100-120 mW (Pi+PPPC+Pdet) is needed to match the conventional galvanic receive chains. The principal limitation is the MZM bias controller, which is not yet robust across MZM-to-MZM variation; closed-loop bias locking will be required before the proposed optical system can be scaled.

We demonstrated, a fully optical single-channel MRI receive chain (i.e. optical detuning, optically powered LNA, and optical data link) validated against a galvanic reference at 3 T with phantom characterization and in-vivo head imaging. Although shown on the head, the approach is anatomy-agnostic. Next steps are miniaturization of the optical front-end and integration into multi-channel arrays.
Morteza TEYMOORI (Freiburg im Breisgau, Germany) , Zining LIU , Jakob GERLACH , Reza AGHABAGHERI , Çağlar ATAMAN , Michael BOCK , Ali Caglar ÖZEN
11:45 - 11:57 #54340 - PG038 A 3 T Head Coil with Flexible Pads for Combined TUS/MRI.
PG038 A 3 T Head Coil with Flexible Pads for Combined TUS/MRI.

Transcranial Ultrasound Stimulation (TUS) is an emerging neuromodulation technology [1] that can benefit strongly from its combination with MRI to enable precise beam guidance [2] and monitoring of immediate effects during stimulation [3]. Previously, we presented a first prototype (CITRUSv1) of a fully rigid TUS/MRI coil with transducer holders within the framework of the “Closed-loop Individualized image-guided TRanscranial Ultrasonic Stimulation (CITRUS)” project [4]. Here, we present a novel prototype (CITRUSv2) with added flexible coils to improve sensitivity and increase the number of transducer positions. Recent studies have explored innovative flexible designs [5-8], including stranded wire coils that offer high mechanical flexibility and SNR [9,10]. As neuromodulation and imaging are highly motion sensitive, a combination of a rigid bottom coil part which offers the possibility to stabilize the head and flexible coil parts closely fitting the frontal part of the head and therefore yielding high SNR could be a solution for optimized TUS/MRI.

A receive-only array (CITRUSv2) for 3 T MRI (123.2 MHz) was developed using flexible, silver-coated copper stranded wires (22 AWG, RS Pro 841-7392, RS components, Corby, U.K.). The coil elements are interfaced through 16 dual-channel modules comprising custom-made printed circuit boards (PCBs) including matching, preamplifier decoupling [11], active and passive detuning, and a fuse. Sockets on the PCB allow stacking of a mixer board (Tim 4G Mini Low Noise Converter, Siemens Healthineers, Erlangen, Germany). A 3D-printed (SLS Nylon PA12, Shapeways, Eindhoven, The Netherlands) rigid former was designed to accommodate 20 + 3 half coil elements and equipped with two connectors (Tim 4G DirectConnect, Siemens Healthineers) fitting the head coil sockets of the patient table. For the flexible coil part, 8 + 3 half coil elements were sewn onto a padding material and inserted into synthetic leather pouches attached through slits of the rigid housing. The flexible part is divided in 3 sections (one central and 2 lateral pads), allowing for routing of the TUS transducer cables between flexible flaps towards the rear end of the scanner bore. The array layout and details of the flexible pouches are shown in Fig. 1. 30 channels were loop coils with a circumference of 28 cm, while one channel at the apex of the head was constructed as a butterfly element with a circumference of 56 cm, as it delivered higher sensitivity than two loops at that position. All channels were individually tuned and matched on an anthropomorphic head phantom (TRUHD-A02, InMed, Seven Hills, Australia) (Fig. 2) using a Vector Network Analyzer (E5092A, Keysight Technologies, USA), measuring Q-values, matching (Sii) and inter-element isolation (Sij). Coaxial and DC cables were bundled in 4 strands which were equipped with one floating cable trap each [12]. A mirror holder (Fig. 2) was also 3D-printed, which can be adjusted in position along the head-foot axis. The coil was tested on the head phantom in a 3 T MR scanner (MAGNETOM Prisma Fit, Siemens Healthineers). Noise correlation matrices from the CITRUS coil and the vendor’s 64-channel head/neck coil as a reference were calculated from noise only scans, SNR maps were calculated using the pseudo-multiple replica method [13] and the SNR ratio between the two coils were computed after realignment of the 3D volumes.

The new coil design allows for simple and versatile positioning of TUS transducers and neuronavigation markers (Fig. 2). S-parameters and aggregated values across rigid, half-rigid/half-flexible, and flexible elements (Fig. 3) demonstrate adequate matching and decoupling. Average decoupling (ΔS21) performance was -25 dB for the preamplifier decoupling (plugged vs. unplugged) and -26.4 dB for active detuning (tuned vs. detuned). The Qunloaded/Qloaded ratio per coil element was ≈ 3.5, indicating sample noise dominance. The noise correlation averaged 0.09 and peaked at 0.48, performing similar to the vendor's coil 0.08 and 0.53. Fig. 4 shows the SNR distribution with the CITRUS coil across the anthropomorphic head phantom, showing good coverage of all brain areas. From the SNR comparison to the 64 ch head/neck coil, a 2-fold SNR increase in the frontal areas (flexible flaps), almost equal SNR in deep areas/central brain and 25% lower SNR in visual areas can be observed.

We present preliminary results with a rigid+flexible coil tailored to combined TUS/MRI, allowing for flexible placement of the TUS transducers while maintaining good coverage of the whole brain with coil elements closely fitting to the head. In future work, in vivo image quality metrics and the impact of variations in transducer positioning in human volunteers will be assessed.

The presented rigid/flexible head coil yields competitive SNR and was designed to enable concurrent TUS/MRI with the ultimate goal to steer the US beam(s) in a closed feedback loop through MR measurements.
Niraj YADAV (Vienna, Austria) , Lena NOHAVA , Onisim SOANCA , Sarah GROSSHAGAUER , Bernardo CAMPILHO , Christian WINDISCHBERGER , Elmar LAISTLER
Sala Simfònica

"Saturday 03 October"

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B32
10:45 - 12:00

LTB3-1 Scientific session
MRI Across the Lifespan: Development, Aging, and Sex-Specific Signatures

10:45 - 10:48 #54649 - PG113 Neonatal white matter FA in thalamo-frontal and perirolandic tracts predicts full-scale IQ at age 5 in children with spina bifida aperta.
PG113 Neonatal white matter FA in thalamo-frontal and perirolandic tracts predicts full-scale IQ at age 5 in children with spina bifida aperta.

Spina bifida aperta (SBA) is a severe neural tube defect resulting from the incomplete closure of the embryonic spinal cord. It has been associated with Chiari II malformation, hydrocephalus, and white matter (WM) microstructural alterations that may underlie long-term cognitive impairment. It remains unexplored whether neonatal tract-specific WM integrity predicts cognitive outcome at school age in large SBA cohorts with long-term cognitive follow-up. We evaluated associations between neonatal cortico-subcortical WM connectivity, spinal lesion characteristics, and IQ scores in children at the age of 5-years.

Neonatal diffusion and structural MRI data were analyzed in 74 subjects with SBA following tractography quality control and streamline exclusions. MRI was acquired on 1.5T (n=19) and 3T (n=55) scanners, with a mean gestational age (GA) at MRI of 38.16 ± 1.06 weeks. The cognitive follow-up at age 5 years included 59 subjects (3T: n=44; 1.5T: n=15), with a mean GA at MRI of 38.15 ± 0.98 weeks. Whole-brain tractography was reconstructed using anatomically constrained tractography and SIFT2 filtering. We employed the Open Spina Bifida Atlas (OSBA) for anatomical parcellation and ROI definition to extract 20 cortico-subcortical WM pathways. Tract-specific median fractional anisotropy (FA) values and streamline count (SC) were quantified for left, right, and bilateral tract representations. The effects of LT and LL on tract-level WM integrity were evaluated with ANCOVA models adjusted for magnetic field strength, gestational age at MRI, sex, LT, and complementary lesion variable. We assessed associations between neonatal WM integrity and full-scale IQ (FSIQ) (Wechsler Intelligence Scale for Children Firth Edition) at the age of 5 years using hierarchical linear regression models. False discovery rate (FDR) correction was applied separately within each hemisphere set (left, right, bilateral).

No associations were significant after FDR correction. In exploratory uncorrected analyses, LL was associated with SC in the right thalamo-precuneus tract (p=0.019, FDR q=0.186, partial η²=0.140) and bilateral thalamo-precuneus tract (p=0.048, FDR q=0.473, partial η²=0.112). Lower median FA was associated with lower FSIQ in several pathways, including left thalamo-precentral (p=0.046, partial η²=0.075), left thalamo-superior frontal (p=0.025, partial η²=0.093), left precentral-postcentral direct (p=0.049, partial η²=0.073), right thalamo-superior frontal (p=0.013, partial η²=0.114), right precentral-postcentral direct (p=0.039, partial η²=0.079), bilateral thalamo-superior frontal (p=0.016, partial η²=0.107), and bilateral precentral-postcentral direct pathways (p=0.039, partial η²=0.079). Across these findings, higher median FA was consistently associated with lower FSIQ.

We observed exploratory links between neonatal WM organization and full-scale IQ at 5 years of age. The predominance of thalamo-frontal and perirolandic pathways suggests that early disruption of sensorimotor and fronto-subcortical connectivity may contribute to long-term variability in cognitive performance. Higher median FA associating with lower FSIQ may reflect WM compression secondary to hydrocephalus. This mechanistic pathway potentially represents a link between neonatal ventricular enlargement and long-term cognitive impairment in SBA. The stronger involvement of lesion level, compared with lesion type, is consistent with our previous DTI findings, supporting the relevance of anatomical lesion severity for downstream brain development. Moreover, the predominance of FA associations compared with SC may be biologically plausible since FA has a higher sensitivity to microstructural tissue organization. A limitation of this study is the heterogeneous MRI acquisition, including both 1.5T and 3T scans, which may have reduced sensitivity to subtle diffusion-based WM alterations.

This study represents one of the largest prospective neonatal SBA cohorts with longitudinal cognitive follow-up to school age, underscoring the value of early diffusion MRI tractography as a non-invasive tool for identifying infants at risk of cognitive impairment. These exploratory findings show associations between altered cortico-subcortical WM connectivity and cognitive outcome at 5 years of age. Thalamo-frontal and perirolandic pathways may represent particularly vulnerable networks linked to later cognitive performance. Our results support neonatal tract-specific WM measures, particularly FA, as potential markers and predictors of later cognitive variability in SBA.
Tobias FERNANDEZ-BORKEL (Zurich, Switzerland) , Anna SPECKERT , Kelly PAYETTE , Raimund KOTTKE , Beth PADDEN , Ruth ETTER , Beatrice LATAL , Andras JAKAB
10:48 - 10:51 #54523 - PG114 White-matter brain-age gap from along-tract FA and MD and its association with cognitive development in youth.
PG114 White-matter brain-age gap from along-tract FA and MD and its association with cognitive development in youth.

Childhood and adolescence are marked by substantial white-matter maturation, which can be probed non-invasively with diffusion MRI. Diffusion tensor imaging provides quantitative measures such as fractional anisotropy (FA) and mean diffusivity (MD), both widely used as markers of microstructural development and cognitive variability [1,2,3]. However, most developmental studies rely on tract-averaged measures, implicitly assuming homogeneous white-matter properties along each bundle. This overlooks the spatial heterogeneity of maturation reported across individual tracts. In parallel, brain-age prediction has emerged as a useful framework to summarize deviations from normative developmental trajectories, but has been less often applied to spatially resolved diffusion profiles. Here, we combine along-tract FA and MD with a functional data analysis framework to derive a white-matter brain-age gap in youth, and test whether this maturational marker is associated with cognitive outcomes.

From the Philadelphia Neurodevelopmental Cohort (PNC), 826 participants (449 female; age 8.2–21.8 years, mean 15.2 ± 3.3) with diffusion MRI and cognitive data were retained after excluding those with an MRI-to-assessment interval >6 months (initial N=1,043). Using a single centrally acquired cohort reduced inter-site and inter-scanner heterogeneity. Diffusion MRI was preprocessed with QSIPrep/QSIRecon, and tractometry was performed as summarized in Figure 1. Along-tract FA and MD profiles were sampled over 100 segments for 51 white-matter tracts (Figure 2). Along-tract FA and MD were modeled as smooth functions using functional principal component analysis (FPCA). Resulting component scores were concatenated across bundles and used to train a Ridge brain-age model in 10-fold cross-validation. Brain-age delta was defined as corrected predicted age minus chronological age, reflecting how much older or younger a participant’s white matter appeared relative to peers. Associations between brain-age delta and five cognitive factors were tested with linear models controlling for age, sex, and head motion, with FDR correction across factors. To localize the strongest effects, tract-wise mean FA or MD was then related to each significant factor using univariate models with the same covariates.

The final FDA model combining along-tract FA and MD produced a global white-matter brain-age phenotype with good age-prediction performance (R²_corrected = 0.470, MAE = 1.88 years). Among the five CNB factors tested, only executive/complex cognition and processing speed showed significant positive associations with brain-age delta after FDR correction. Specifically, greater brain-age acceleration was associated with higher scores in complex cognition (β = 0.341, q = 0.036) and processing speed (β = 0.229, q = 0.013), whereas the other factors were not significant (Figure 3). Tract-level screening revealed distinct anatomical patterns for these two factors (Figure 4). For processing speed, the strongest associations involved a distributed callosal and thalamo-cortical set of tracts, including the corpus callosum body and anterior mid-body (FA), bilateral posterior optic radiations (MD), and the right thalamo-parietal tract (FA). In contrast, executive/complex cognition showed a stronger and more focal callosal signature, with the top-ranked tracts concentrated in four callosal sections in both FA and MD. Together, these results suggest that the global brain-age phenotype reflects distributed white-matter maturation, while tract-level analysis highlights the commissural and projection pathways most strongly related to executive/complex cognition and rapid information processing.

The FDA-based brain-age model achieved good predictive performance, supporting the value of explicitly modelling the spatial variation of diffusion metrics along white-matter tracts [6,7,8]. Executive/complex cognition and processing speed were significantly associated with brain-age gap. Positive associations were observed for FA-based effects and negative associations for MD-based effects, such that participants with a white-matter brain age ahead of their chronological age (higher FA or lower MD) tended to show better cognitive outcomes. This pattern is consistent with previous findings linking developmental changes in white-matter diffusion metrics to gains in cognition, including both accuracy and processing speed, across childhood and adolescence. From a neurodevelopmental perspective, deviation in this fine-grained white-matter brain-age measure may reflect greater myelination and axonal organization, supporting the maturation of higher cognitive and processing speed abilities.

A white-matter brain-age gap derived from along-tract FA and MD is associated with executive/complex cognition and processing speed in youth, supporting its value as a marker of individual variation in white-matter maturation.
Sophie MOSEGAARD (Lausanne, Switzerland) , Leah SCHMIDT , Jonas RICHIARDI , Jean-Philippe THIRAN , Jonathan Rafael PATINO , Vanessa SIFFREDI
10:51 - 10:54 #54211 - PG115 High-resolution DTI and NODDI over the development of the rat cortex and relationship to neuronal and glial cell maturation.
PG115 High-resolution DTI and NODDI over the development of the rat cortex and relationship to neuronal and glial cell maturation.

Diffusion tensor imaging (DTI) has been widely used to assess changes during normal brain development as well as in various neurodevelopmental disorders [1,2]. While its ability to probe brain microstructure and its sensitivity to microstructural alterations are well established, it also suffers from limited specificity. Indeed, tensor-derived metrics such as fractional anisotropy (FA) are highly sensitive to microstructural variations but lack sufficient specificity to distinguish between tissue types. Consequently, many brain disorders can result in reduced FA, even though this measure alone cannot differentiate among them. Neurite orientation dispersion and density imaging (NODDI) [3] is an advanced-diffusion MRI technique designed to provide more direct estimates of cellular morphology than DTI. However, whether this method truly offers greater specificity remains an open question. The aim of this study was to address this issue in the context of cortical development in rats. To this end, we investigated developmental changes in NODDI and DTI metrics in the rodent cerebral cortex and compared them with the outgrowth, orientation, and density of neuronal, astrocytic, and microglial processes.

At post-mortem, brain tissues were collected at post-natal day (P)1, P3, P7, P14, P21, or P35. Prior to imaging, rat brains were immersed in Fomblin©, a fluorinated lubricant that does not transmit any MR signal. Ex-vivo MRI acquisitions were performed using an actively shielded 9.4T/31cm magnet (Varian) equipped with 12 cm gradient coils (400 mT/m, 12 µs) and a transceiver birdcage RF coil (2.5 cm ø). A spin echo sequence was used to acquire a multi-b-value shell diffusion-weighted imaging protocol. A FOV of 16×12 mm2 (P1 and P3), 20×15 mm2 (P7), 23×17 mm2 (P14 and 21), and 25×20 mm2 (P35) was sampled on a 128×92 Cartesian grid. Brain slices of 0.6-mm thickness (~6 slices at P1, P3, and P7; ~8 slices at P14; ~10 slices at P21 and P35) were acquired in the axial plane over the length of the corpus callosum with 3 averages and TE/TR = 45/2000 ms. 96 diffusion-weighted images were acquired, 15 of which were b0 reference images. The remaining 81 non-collinear images were uniformly distributed in three shells represented as the number of directions/b-value (s/mm2): 21/1750 s/mm2, 30/3400 s/mm2, and 30/5100 s/mm2. Data were fitted using NODDI toolbox to estimate the isotropic volume fraction (fiso), the intraneurite volume fraction or neurite density index (NDI) as well as the orientation dispersion index (ODI). The DTI parameters (MD and FA) and NODDI parameters (NDI and ODI) were averaged in the cortex. Following MRI, staining (MAP2, GFAP, lectin) was performed. For statistical analysis, a one-way ANOVA was used (significance for p<0.05).

MRI: For DTI (Fig.1 and 2), there was a progressive developmental decrease in FA (from P1–P7, p≤0.0253) which largely plateaued thereafter (i.e., from P7–P35). For NODDI (Fig. 2), there was an increase in ODI from P1–P14 then plateaued thereafter (i.e., from P14–P35). For NDI (Fig. 3), there was a significant decrease in NDI from P1–P3, an increase from P3–P7, and a slight decrease from P7–P14 while plateaued thereafter until P35. Neuronal Dendritic morphology (Fig.2): the number of dendritic nodes (branch points) progressively increased from P3–P21. Neuronal dendritic process density (Fig. 3): The relative process density of neuronal dendrites significantly decreased from P1–P3 (p≤0.0030), increased from P3–P7 (p≤0.0100), and decreased from P7–P14 (p≤0.0030) in the cortex, then remained relatively stable thereafter (i.e., from P14–P35).

The patterns of changes in cortical FA (DTI) and ODI (NODDI) from ~P1–P14 in the rat were equivalent to those in humans over the preterm to term periods. FA and ODI were primarily reflective of histological changes in neuronal process fanning (i.e., process orientation) rather than of neuronal process complexity or process density, while there was limited evidence of an influence of glial processes. The NODDI parameter neurite density index (NDI) directly reflected histological changes in neuronal process density relative to that of glial process density (i.e., astrocytes, radial glia, and microglia).

Overall, these findings suggest that NODDI is a useful tool for direct assessment of alterations in neuronal dendritogenesis in the developing cerebral cortex with a better specificity as compared to DTI.
Yohan VAN DE LOOIJ (Geneva, Switzerland) , Petra WHITE , Jaya PRASAD , Art RIDDLE , Alistair GUNN , Justin DEAN , Stéphane SIZONENKO
10:54 - 10:57 #54466 - PG116 A Longitudinal 7T qMRI Study of Brain Maturation and Early Aging in Female Wistar Rats.
PG116 A Longitudinal 7T qMRI Study of Brain Maturation and Early Aging in Female Wistar Rats.

Aging is a natural process that results in structural and microstructural changes in the brain. Understanding healthy brain aging is crucial, as it may help clarify when and why these normal physiological shifts transition into early-stage neurodegeneration [1]. Magnetic resonance imaging (MRI) is used as a non-invasive tool for tracking these age-related alterations over time. Conventional structural MRI provides detailed insights into macroscopic features such as volumetric changes and regional atrophy [2], but does not capture microstructural changes including variations in tissue water content, iron accumulation, and myelination [3]. In contrast, quantitative MRI (qMRI) provides tissue-sensitive biomarkers reflecting changes in water content, myelination, and iron deposition that underlie normal aging [4]. T1 and T2 relaxation times are sensitive to free water, iron content, and myelination [5], while R2* (=1/T2*) serves as an in vivo iron marker [6]. Aging leads to iron accumulation in subcortical regions [6] and region-specific changes in T1 and T2 [7, 8]. In rodent models, R2* shows age-related increases in striatum, globus pallidus, and substantia nigra, while T1 and T2 vary by region and field strength [8, 10, 11]. Here, we present a 7T paired longitudinal study simultaneously mapping T1, T2, and R2* from 3 to 12 months across 16 female rat brains.

Data Description: This study includes 16 female Wistar rats, each scanned at both 3 and 12 months of age using a 7 Tesla preclinical MRI scanner (MR Solutions Ltd., UK). The imaging protocol included T1-weighted (FSE; TR/TE: 1000/11 ms; FA: 90°; resolution: 0.125 × 0.125 × 0.8 mm³), T2-weighted (FSE; TR/TE: 2500/40 ms; FA: 90°; resolution: 0.125 × 0.135 × 0.8 mm³), Inversion Recovery FLASH (IR FLASH) sequence for T1 mapping (TR/TE/TI: 10/4/50 ms; FA: 8°; resolution: 0.125 × 0.25 × 2 mm³), Multi-Echo Multi-Slice (MEMS) sequence for T2 mapping (TR/TE: 4000/150 ms; FA: 90°; resolution: 0.16 × 0.31 × 1 mm³), and Multi-Gradient Echo sequence (MGE) for R2* mapping (TR: 1620 ms; FA: 60°; 9 echoes: 4.0–21.12 ms; resolution: 0.36 × 0.36 × 0.36 mm³). Preprocessing, Fitting, and Analysis: Data were reoriented to the SIGMA Rat Brain Atlas [11] and skull-stripped using MimRat, an in-house U-Net-based toolbox trained on Wistar rat data (ISMRM, 2026). T2, T1, and R2* maps were derived voxel-wise by fitting the acquired signals to mono-exponential decay, inversion recovery, and gradient echo decay models, respectively (Eq. 1–3). Maps were registered to the SIGMA Atlas using ANTsPy for regional ROI extraction. Group comparisons used paired t-tests or Wilcoxon signed-rank tests (normality assessed by Shapiro-Wilk), with Benjamini-Hochberg FDR correction. Significance was defined as p_FDR < 0.05 for T1 and T2, and p_FDR < 0.10 for the exploratory R2* analysis, with the latter labeled as trend-level.

T1 relaxation times showed a marked decrease between 3 and 12 months, with the majority of analyzed regions (14 out of 19) reaching p_FDR < 0.001 (Figure 2). Similarly, T2 values showed significant shortening, with the strongest effects concentrated in iron-rich subcortical nuclei (Figure 3). R2* analysis was restricted to 12 ROIs selected based on the literature on age-related brain iron accumulation. After BH-FDR correction, Cornu Ammonis1 (CA1) showed a significant increase in R2* values, and Basal Forebrain showed a significant decrease. At a lenient FDR threshold (p_FDR < 0.10), additional trend-level increases were observed in CA2, Thalamus, Corpus Callosum, and Descending Corticofugal Pathways/Globus Pallidum, alongside a trend-level decrease in the Hypothalamic Region (Figure 4).

The T1 shortening observed across nearly all regions is consistent with continued myelination and macromolecular accumulation in early adulthood [4]. The T2 shortening concentrated in globus pallidus, substantia nigra, subthalamic nucleus, and periaqueductal grey aligns with the known sensitivity of T2 to iron in these nuclei. The R2* findings further support early iron accumulation, consistent with the well-established R2*-iron relationship [12] and rodent evidence of age-related increases in iron [9]. Convergent T2 shortening and R2* increases in the Thalamus and Corticofugal/GP across two independent contrasts strengthen the iron accumulation interpretation. The decrease in R2* in the Basal Forebrain and Hypothalamic Region goes against this trend and may reflect localized differences in free water or vascular properties specific to these regions.

Multi-contrast qMRI at 7T sensitively captures overlapping maturational and early aging microstructural processes in the rodent brain. Acknowledgments: This study is funded by the Scientific and Technological Research Council of Türkiye (TÜBİTAK) 1004 grant (project number: 22AG016).
Leen HAKKI (Istanbul, Turkey) , Belal TAVASHI , Uluç PAMUK , Ayşenur GÖK , Esin ÖZTÜRK IŞIK , Pınar Senay ÖZBAY
10:57 - 11:00 #54463 - PG117 Investigating the effects of prospective motion correction on age-related changes in functional connectivity.
PG117 Investigating the effects of prospective motion correction on age-related changes in functional connectivity.

Ageing affects functional connectivity (FC) between brain areas [1]; however, given that older adults move more during scanning compared to younger adults [2], previously reported ageing-related changes might be confounded by motion artefacts. Prospective motion correction (PMC) methods have been shown to improve resting-state fMRI data quality [3], [4]. However, evidence that these improvements in raw data translate into meaningful benefits for downstream FC analyses remains inconclusive. Here, we investigate the effects of PMC on FC metrics in healthy older and younger adults, examining whether age-related connectivity differences may be motion-related and exploring the potential value of PMC for ageing research.

The PMC system comprises an optical camera set up inside the MRI scanner that tracks in real time the motion of a Moiré phase marker attached to participants via a custom-made 3D-printed mouthpiece (Figure 1). Data were acquired for 20 young (mean age: 24 years, range: 18–31 years, 10F) and 20 older volunteers (mean age: 71 years, range: 60–83 years, 10F), with no neurological/psychiatric history. Resting-state fMRI data were acquired at 3T using a 2D EPI sequence (TR/TE=2000ms/30ms, 32 slices, voxel size=3×3×3.75mm³). Participants were instructed to remain relaxed with eyes open and looking at a fixed cross for 10 minutes. Data were collected under three conditions: (i) NoMark (no PMC, no mouthpiece), (ii) NoMoCo (no PMC + mouthpiece), and (iii) MoCo (PMC + mouthpiece), in a counterbalanced order across participants. All conditions were repeated in two sessions on different days, under typical scanning conditions without deliberate subject motion. Preprocessing was performed using fMRIPrep [5] for initial preprocessing (including rigid body motion correction). Additional preprocessing steps were performed in FSL [6] and included: (i) nuisance regression of 24 motion parameters and mean white matter and cerebrospinal fluid BOLD time series, (ii) high-pass temporal filtering (cut-off: 0.01 Hz), and (iii) spatial smoothing (Gaussian kernel, FWHM = 3 mm). Node-based connectome analysis was performed using the Schaefer atlas (400 regions) [7]. For each participant and session, FC matrices were generated by computing Pearson correlation coefficients between the mean BOLD time series in all region pairs. For graph metrics analysis, connections were thresholded at 2% to retain only the strongest connections. Graph metrics (modularity, local efficiency, global efficiency) were estimated from the binarised thresholded matrices using the Brain Connectivity Toolbox [8]. Segregation was computed from the original FC matrix, normalised using Fisher's r-to-z transformation [9].

Figure 2 illustrates the percentage of significantly different edges in FC matrices across three comparisons. Age-group differences (Figure 2-3A) in connectivity appeared most pronounced in the MoCo condition, suggesting that motion correction may reveal age-related network differences. Age-group differences exceeded within-group condition-related differences: the older group (Figure 2-3B) showed moderate connectivity differences between MoCo and both NoMark and NoMoCo, suggesting that PMC may alter the functional connectome in older adults, though to a lesser extent than age-related differences. The younger group showed minimal connectivity changes across conditions, suggesting that PMC may have limited effects on younger adult connectomes. Graph-based connectome metrics (Figure 4) showed patterns suggesting age-related differences in network organisation that appeared attenuated by PMC. Older adults showed significantly lower local efficiency and segregation compared to younger adults in NoMark and NoMoCo conditions. These apparent age-related differences were attenuated in the MoCo condition. Modularity showed a trend toward age-related decline but did not reach statistical significance. Global efficiency showed no significant differences between age groups or across acquisition conditions. Within-group analysis suggested that acquisition conditions may have affected local efficiency in older adults (NoMark and NoMoCo conditions) and segregation in younger adults (NoMark condition). Session-to-session variability was negligible across all analyses performed.

This study investigates the effects of PMC on FC metrics across two age groups. Our findings suggest that PMC has the potential to increase FC organisation in older adults while offering limited benefit for younger adults. PMC attenuated age-related differences in local efficiency and segregation, suggesting that apparent age-related connectivity declines reported in the literature may be partly influenced by motion artefacts.

This study provides evidence that PMC goes beyond improving resting-state fMRI data quality [3], [4], but also has the potential to increase FC organisation in older adults and attenuate age-related differences in network organisation.
Beatriz VALE (Lisbon, Portugal) , Patrícia FIGUEIREDO , Marta CORREIA
11:00 - 11:03 #54593 - PG118 Structural Connectome Sensitivity Analysis in the Alzheimer’s Disease Spectrum using Cortical ROI Amendment for Juxtacortical White Matter Parcellation.
PG118 Structural Connectome Sensitivity Analysis in the Alzheimer’s Disease Spectrum using Cortical ROI Amendment for Juxtacortical White Matter Parcellation.

Structural connectome analysis using diffusion Magnetic Resonance Imaging (dMRI) tractography is limited by several confounding factors that impede the generalization of findings [1]. Standard analysis pipelines investigating the connection between grey-matter regions and white-matter pathways frequently suffer from registration and alignment inaccuracies at the grey-white matter interface (GWI), even with detailed, surface-based parcellation schemes [2]. In neurodegenerative disorders such as Alzheimer's disease and Mild Cognitive Impairment (MCI), progressive cortical atrophy further exacerbates this GWI misalignment, potentially leading to the artificial truncation of tractography streamlines. Consequently, short-range juxtacortical connections often remain undetected, and even long-range fiber paths may be diverted in voxels near the GWI, significantly altering graph theoretical metrics. Geometric expansion (dilation) of cortical Regions of Interest (ROIs) has been proposed to counteract this limitation [3]. We aimed to investigate its systemic effect on topological density and classification sensitivity, in order to examine the optimal level of ROI amendment using multi-threshold sensitivity analysis.

Diffusion and T1-weighted MRI images from 76 elderly subjects (mean age 68.4, 43 males, 25 controls, 18 naMCI, 22 aMCI, and 11 dementia patients - DEM, categorized by Addenbrooke Cognitive Examination) were processed using ExploreDTI [4, 5]. dMRI data included 64 directions with b=2000s/mm^2 and 11 b=0 images, with 2mm isotropic voxel size in 70 slices; T1w 3D GRE images were collected with 1mm resolution. Diffusion data was up-sampled and registered to the T1w images during motion and distortion correction, followed by whole brain Constrained Spherical Deconvolution (CSD) tractography and connectivity calculations. Subcortical and cortical ROIs were derived from the Desikan-Killiany atlas [6] using Freesurfer [7] in each subject’s anatomical space. Cortical ROIs were incrementally dilated into the white matter from 1mm to 5mm with a 1mm step size using an in-house Matlab script. Connectome thresholding was evaluated across multiple streamline thresholds (2/3/4/5 tracts) and consistency-based filtering (retaining edges consistent across 50% of the HC cohort), resulting network density values were compared across subject groups and ROI dilation steps. Network topology was quantified utilizing weighted Node Strength, Local Efficiency, Betweenness Centrality, Participation Coefficient, Global Efficiency (EGlob), and Characteristic Path Length (Λ, with penalty on infinite values) using functions from the Brain Connectivity Toolbox [8]. Different edge weightings were also examined [9], using connectivity matrices weighted according to along-tract fractional anisotropy (FA), fiber orientation distribution (FOD), and tract density. Linear Mixed-Effects Models (LMM) with False Discovery Rate (FDR) corrections were employed to analyze (Diagnosis × Dilation) interaction effects, adjusting for age, gender, and level of education.

Sensitivity analysis demonstrated a highly linear expansion of graph density under consistency-based filtering, scaling from 10-12% at 0mm to 26-30% at 5mm. Macroscopic network features revealed highly significant (Diagnosis × Dilation) interactions for both EGlob (F=3.57,p=7.75×10^-6) and Λ (F=3.89,p=1.51×10^-6). When analyzing local metrics, the FOD-weighted node strength of the Left Hippocampus emerged as the top-performing ROI, exhibiting the strongest interaction effect (F=6.21,p=5.97×10^(-10), followed by key components of the medial temporal and paralimbic networks. An evident cross-over effect was observed at 1–2mm dilation steps: the aMCI cohort demonstrated transient elevated structural connectivity in the Left Hippocampus, which collapsed at further ROI amendment steps.

Using original parcellations, GWI misalignment and graph fragmentation rendered both local and global metrics incapable of separating clinical groups (p=0.84). Incremental dilations of 1mm to 3mm successfully functioned as a methodological correction, improving connectivity description through the juxtacortical zone. Mean connectome density was within the biologically optimal and stable 15-25% range [10, 11] in all groups with 2-3mm dilation, resolving the clinical trajectory HC
The 1–2mm ROI dilation steps combined with the 50% healthy control-based consistency threshold provided the optimal trade-off for structural connectomics, salvaging juxtacortical connections and maximizing diagnostic sensitivity within the AD spectrum, without severe contamination of false connections and altered topology.
Gyula GYEBNÁR (Budapest, Hungary) , Noémi GYÜRE , Lajos Rudolf KOZÁK , Gábor CSUKLY
11:03 - 11:06 #54471 - PG119 Skeletal muscle fat infiltration and volume predict brain age gap: A population MRI study.
PG119 Skeletal muscle fat infiltration and volume predict brain age gap: A population MRI study.

Sarcopenia is defined as the loss of both muscle quantity and quality and is one of the main signs of deterioration and comorbidity in the adult population [1,2]. It has been associated with accelerated brain ageing and cognitive decline, suggesting a shared underlying mechanism between muscle and brain deterioration [3-7]. Magnetic resonance imaging allows to accurately assess both the parameters suggestive of sarcopenia and brain structure. Structural brain features can be used to determine the estimated brain age gap (BAG), recognized as a hallmark of accelerated brain ageing [8]. This study seeks to find an association between the muscle parameters obtained by magnetic resonance imaging and the BAG as part of the Ageing Imagenomics Study, supported by the Generalitat de Catalunya through the Strategic Plan for Health Research and Innovation 2016-2020.

This observational, cross-sectional study included 1030 participants aged 50–98 years from the province of Girona. Samples and data were provided by the IDIBGI Horizontal Ageing Program and the IDIBGI Biobank. Whole-body Dixon T1-weighted MRI was acquired at 1.5 T (repetition time 8.9 ms, flip angle 12°, voxel size 1.4 × 1.4 × 8.2 mm, field of view 450 mm; 15 slices from L1 to L5) and processed using an in-house script based on TotalSegmentator [9,10], for automated segmentation of the L3 vertebral level, and NIPY, obtaining skeletal muscle volume and intramuscular fat fraction (Fig. 1). Brain age was estimated from cerebral T1-weighted data using a sex-specific pre-trained XGBoost model provided by Kaufmann et al. [11], based on a set of 1118 features extracted with FreeSurfer using the Glasser atlas [12] (Fig. 2). BAG was calculated as the difference between predicted brain age and chronological age. Statistical analyses were implemented in R programming software, and linear regression models were estimated after data scaling to evaluate associations between muscle parameters and BAG. Additional analyses stratified by gender were implemented to explore gender discrepancies.

The final analysis (Fig. 3) included 961 participants (440 women and 521 men). After adjusting for gender, intramuscular fat fraction showed a positive and significant association with BAG (β = 0.165, p < 0.001), while skeletal muscle volume showed a negative association (β = –0.071, p = 0.049). Gender was also a significant predictor (male β = 0.206, p = 0.006). In sex-stratified analyses, intramuscular fat fraction remained significantly associated with BAG in both women and men (β = 0.172, p=0.043; β = 0.125, p = 0.003; respectively), whereas muscle volume was significantly associated only in men (β = –0.095, p = 0.023). These findings indicate that muscle parameters related to sarcopenia are associated with brain ageing, with partially distinct patterns by sex.

Greater intramuscular fat fraction was associated with accelerated brain ageing, while higher muscle volume showed a protective effect [6]. These associations were sex-dependent: fat infiltration predicted BAG in both sexes, whereas muscle volume was significant only in men. These results support ageing as a systemic phenomenon where brain deterioration and sarcopenia share mechanisms such as chronic inflammation and oxidative stress [2,7]. Lack of multivariable adjustment for lifestyle covariates is a limitation, though consistency aligns with prior evidence [3-6]. From a clinical perspective, combining muscle MRI indicators with neurostructural biomarkers such as BAG may provide a more comprehensive view of the ageing phenotype, enabling the identification of accelerated ageing risk profiles. Longitudinal studies incorporating broader clinical and lifestyle variables are needed to establish causal direction and evaluate whether muscle-preserving interventions benefit brain health.

Reduced skeletal muscle mass and increased intramuscular fat infiltration are associated with accelerated brain ageing. Although multivariate adjustment was not possible due to the temporal unavailability of some covariates, the consistency and direction of the results support a biologically plausible link between muscle composition and brain ageing. These findings reinforce the hypothesis that ageing is a systemic process in which muscle and brain health are interconnected.
Madalina DONI (Girona, Spain) , Elena DE LA CALLE , Carles BIARNÉS , Marian MARTÍ-NAVAS , Rafael RAMOS , Josep PUIG , Josep GARRE-OLMO , José Manuel FERNÁNDEZ-REAL , Victor PINEDA
11:06 - 11:09 #54457 - PG120 Functional and structural brain correlates in obesity: Multimodal neuroimaging reveals insulo-striatal reward hyperconnectivity and disruption of memory-interoceptive pathways associated with microstructure and magnetic susceptibility.
PG120 Functional and structural brain correlates in obesity: Multimodal neuroimaging reveals insulo-striatal reward hyperconnectivity and disruption of memory-interoceptive pathways associated with microstructure and magnetic susceptibility.

Obesity is associated with alterations in brain structure and function, particularly affecting reward, interoceptive, and memory networks, where the insula, basal ganglia, thalamus and hippocampus are key nodes [1,2]. Quantitative susceptibility mapping reveals iron deposition linked to neuroinflammation, while diffusion tensor imaging estimates white matter degradation. The fornix, the main hippocampal output tract, shows reduced integrity with increasing BMI [3]. However, the integration of resting-state functional connectivity, QSM, and DTI remains underexplored [1,2,4,5]. This study characterizes obesity-related alterations in these interconnected systems and their relationships, as part of the IRONMET-CGM study.

We studied 128 participants (62 controls, 66 with obesity), with groups balanced for sex and menopausal status. Multimodal 1.5T MRI data were acquired, including T1-weighted 3D with millimetric voxel, QSM with 6 echoes (TE 6.8ms, ΔTE 8.2 ms), resting-state fMRI of 240 volumes (TR 2.5 s, voxel 3×3×4 mm), and DTI of 32 directions (b=800 s/mm², voxel 2×2×2.5 mm). Resting-state fMRI was preprocessed and analyzed using the CONN toolbox. ROI-to-ROI connectivity analysis compared functional connectivity between groups (obesity > controls), adjusted for age, sex, and years of education, focusing on putamen, pallidum, caudate, thalamus, hippocampus, amygdala, and insula. Cluster-based inference followed standard parametric multivariate statistics [6], with p<0.05 uncorrected at the connection level and p<0.05 FDR-corrected at the cluster level. QSM (Fig. 1) was calculated from magnitude and phase images using the V-SHARP 3D [7] and the STAR-QSM algorithms from STI-suite software [8], normalized via DARTEL from SPM12 using T1-weighted 3D as reference, with deformation applied to quantitative susceptibility mapping. DTI was processed using the QSDR [9] method from DSI Studio [10]. QSM and DTI metrics (fractional anisotropy, mean diffusivity, radial diffusivity, axial diffusivity) were extracted from AAL (basal ganglia) and ICBM-DTI-81 (white matter) atlases. Partial correlations with R software (adjusted for age, sex, and hypertension [11]) explored functional-structural relationships based on anatomical hypotheses (Fig. 2).

Obesity was associated with altered rs-fMRI across 9 clusters (Tab. 1, Fig. 2). The most prominent findings were hyperconnectivity between the insula and pallidum (Cluster 1) and hypoconnectivity between the insula and hippocampus (Cluster 4). Additional hyperconnectivity was observed in putamen-pallidum, thalamus, hippocampus-amygdala, and insula-putamen clusters, with intra-striatal hyperconnectivity in accumbens and caudate, and pallidum-accumbens hypoconnectivity. QSM revealed increased iron deposition in obesity in the thalamus left (d=0.58, p=0.003), pallidum bilaterally (left: d=0.55, p=0.005; right: d=0.54, p=0.005), posterior limb of the internal capsule left (d=0.66, p=0.0008), fornix (d=0.50, p=0.010), and external capsule left. DTI showed reduced FA and increased MD and RD in posterior limb of the internal capsule bilaterally, external capsule, and uncinate fasciculus. Multimodal correlations (Fig. 3) revealed that insula-hippocampus hypoconnectivity correlated negatively with fornix QSM (r=-0.33, p=0.0007). Insula-pallidum hyperconnectivity correlated with pallidum QSM (r=0.20, p=0.045) and external capsule FA (r=0.22, p=0.023). Putamen-pallidum hyperconnectivity correlated with posterior limb of the internal capsule FA (r=0.22, p=0.019).

Our findings reveal a dual pattern in obesity: hyperconnectivity within reward-interoceptive circuits alongside hypoconnectivity in memory-interoceptive pathways, the latter correlating with iron accumulation and microstructural degradation in the fornix. The insula-pallidum hyperconnectivity aligns with altered insulo-striatal coupling, where reward-driven mechanisms guide eating behavior [12]. The fornix is critical for hippocampal-hypothalamic communication; its iron deposition may reflect neuroinflammatory disruption of memory-guided feeding [3]. The globus pallidus, naturally the most iron-rich basal ganglia structure [13], showed prominent magnetic susceptibility alterations, potentially acting as an early site of iron overload. This may drive hyperconnectivity within basal ganglia circuits as a compensatory response to downstream microstructural damage. The correlation between structural metrics and rs-fMRI supports that iron dysregulation and white matter degradation are associated with functional network alterations in obesity.

Obesity is characterized by a dissociation between hyperconnected reward circuits and hypoconnected memory-interoceptive pathways, with multimodal evidence linking these functional alterations to iron deposition in the fornix and basal ganglia and to white matter degradation in limbic tracts. These findings offer potential biomarkers for obesity-related brain vulnerability.
Elena DE LA CALLE (Girona, Spain) , Carles BIARNÉS , Marian MARTÍ-NAVAS , Gerard BLASCO , María ARNORIAGA-RODRÍGUEZ , Josep PUIG , Victor PINEDA , José Manuel FERNÁNDEZ-REAL
11:09 - 11:12 #54667 - PG121 Sex-specific longitudinal microstructural alterations in the substantia nigra and striatum of a rat model of Parkinson’s disease.
PG121 Sex-specific longitudinal microstructural alterations in the substantia nigra and striatum of a rat model of Parkinson’s disease.

Parkinson's disease (PD) is characterized by the progressive loss of neuromelanin-containing dopaminergic neurons in the substantia nigra (SN), with dopaminergic dysfunction in the striatum (STR) and abnormal iron accumulation. The adeno-associated viral vector expressing human tyrosinase (AAV-hTyr) rat model1 reproduces these features by inducing neuromelanin accumulation, dopaminergic cell loss, Lewy body formation, and motor deficits. While T1-weighted neuromelanin imaging and T2* relaxometry capture neuromelanin and iron-related changes, advanced diffusion MRI provides complementary microstructural information: Diffusion Kurtosis Imaging (DKI) assesses tissue complexity, Neurite Exchange Imaging (NEXI) characterizes neurite density and exchange processes2 in STR projections, and Soma and Neurite Density Imaging (SANDI) estimates soma density and size3 in soma-rich regions such as the SN. Here, we performed longitudinal in vivo multiparametric MRI in AAV-hTyr rats to characterize microstructural alterations in the SN and STR and explore sex differences.

Sprague Dawley rats received bilateral injections of either AAV-hTyr (n = 8 females, 6 males) or empty AAV vehicle (n = 7 females, 7 males) in the SN. MRI acquisitions were performed at 1 and 4 months post injection (m.p.i.) on a 9.4 T Bruker MRI system with a cryoprobe. The protocol included: T2-weighted imaging for anatomical reference; a multishell, multi-diffusion time diffusion MRI (dMRI) (dw-SE-EPI, 122 directions, 5 b-values, 3 Δ, Figure 1), with 4 b=0 with both forward and reverse phase encoding; T1-weighted FLASH for neuromelanin contrast visualization; and T2* mapping (multi-gradient echo, TR=42ms, TE=2.2:2.2:35.2ms, whole brain). dMRI images were preprocessed using MP-PCA denoising, Gibbs unringing, and motion and distortion correction. DKI was fitted separately for each Δ using constrained weighted least squares in Designer2, as trends were consistent across diffusion times, only Δ = 26 ms is shown in the Results. SANDI was fitted to the shortest diffusion time (Δ = 15 ms) and NEXI to the full multi-shell, multi-Δ dataset, both using SwissKnife. Statistical analyses were performed separately by sex in R, using linear mixed-effects models to assess Group, Time, and their interaction. Correlations between parameter pairs were assessed at each time point using Pearson’s r within groups, including a Group interaction term to test between-group differences.

Males: In the SN, radial kurtosis (RK) values increased from 1 to 4 m.p.i. in the hTyr group (p < 0.05). In the STR, NEXI showed a decrease in exchange time (tex) (p < 0.05) and an increase in extra-neurite diffusivity (De) over time (padj < 0.05) in the hTyr group (Figure 2), with only De surviving correction for multiple comparisons. At 4 m.p.i., significant group-dependent correlations were found between striatal tex and both SN T1-weighted contrast (p < 0.05), and striatal T2* (p < 0.05) (Figure 3). In both cases, sham animals showed negative correlations, whereas hTyr animals showed positive correlations. However, these associations did not survive correction for multiple comparisons. Females: In the SN, hTyr animals showed a progressive increase in axial kurtosis (AK) from 1 to 4 m.p.i. (p < 0.001). SANDI revealed that hTyr animals presented larger soma increase compared to sham animals (p < 0.05). In the STR, FA increased over time in the hTyr group (p < 0.05) (Figure 4). However, none of these effects survived correction for multiple comparisons.

Sex-specific microstructural profiles suggest distinct disease progression in the AAV-hTyr model. In the SN, the progressive RK increase in males may reflect greater tissue complexity, potentially linked to neuroinflammatory processes such as microglial activation4. In the STR, increased extra-neurite diffusivity may indicate neurodegeneration5, while shorter tex indicates faster intra-extracellular water exchange, consistent with possible membrane alterations or demyelination linked to PD-related dopaminergic degeneration6. In hTyr males, the association between Striatal tex and nigral T1-weighted contrast may link striatal microstructural changes to neuromelanin-related alterations in the SN, while its association with striatal T2* may reflect local susceptibility-related changes, consistent with iron accumulation.

Diffusion parameters from biophysical models showed potential as non-invasive in vivo biomarkers of PD-related microstructural alterations in the SN extending to the STR. These metrics may provide more specific information about underlying neuropathology, although their biological interpretation requires confirmation through histological analyses, ongoing. Sex-specific microstructural profiles emerged, with stronger male alterations potentially consistent with the neuroprotective role of female hormones, particularly estrogen, in PD7.
Adriana FERREIRO (Madrid, Spain) , Rita OLIVEIRA , Ines DAOUD , Tommaso PAVAN , Estelle GEROSSIER , Jocelyn GROSSE , Miquel VILA , Blanca LIZARBE , Ileana JELESCU , Jean-Baptiste PÉROT
11:12 - 11:15 #54601 - PG122 Susceptibility mapping and χ-separation reveal sex-dependent effect of neuromelanin accumulation in a rat model of Parkinson’s disease.
PG122 Susceptibility mapping and χ-separation reveal sex-dependent effect of neuromelanin accumulation in a rat model of Parkinson’s disease.

The lack of early biomarkers of Parkinson’s disease (PD) progression is limiting the pace of advances towards a disease-modifying therapy. The role of neuromelanin (NM), a pigment that accumulates in dopaminergic neurons of primates1, is drawing growing interest. Rodent models with NM accumulation develop a wide panel of Parkinson-related symptoms2. Interestingly, NM generates a specific MRI contrast, making it a promising candidate biomarker in humans and rodents3. NM is a chelator of iron, and rats with NM accumulation (hTyr) showed increased iron in the substantia nigra (SN), as highlighted with quantitative susceptibility mapping (QSM)4. However, the exact shape and localization of iron deposits is poorly understood. In this study, we performed longitudinal, multiparametric MRI on hTyr rats to explore the impact of NM on iron accumulation in the SN and in the striatum using relaxometry, QSM and χ-separation.

Sprague Dawley rats were injected with AAV-hTyr (N=8 females and 6 males) or sham AAV (Sham, N=7 females and 8 males) bilaterally in the SN at the age of 2 months. Rats were scanned on a 9.4T Bruker MRI system equipped with a cryoprobe, under medetomidine sedation, 1 and 4 months after injection. A T2-weighted image was acquired for anatomical reference followed by T1-weighted for visualization of neuromelanin contrast (Turbo spin echo), T2* mapping (multi-gradient echo) and T2 mapping (multi-spin multi-echo). All acquisition parameters are described in Figure 1. Segmentation of the SN was performed on T1-weighted images and registered to a multicontrast study template (using ANTs). Quantitative T2 and T2* maps were computed by voxel-wise fitting of the multi-echo data to a mono-exponential decay. χtot was computed from magnitude and phase MGE images using QSMxT pipeline with default values. QSMxT uses ROMEO for phase unwrapping, followed by TGV-QSM algorithm5, with the use of pre-existing masks. R2’ images were computed (R2* - R2). χpara and χdia were calculated by solving a system of equations that models χtot as the algebraic sum of the components6 (χtot = χpara + χdia) and R2’ as a linear combination of both susceptibilities (R2’ = α. χpara + β. χdia + c), with α=120 Hz and β=80 Hz. The effect of Group and Time were then tested separately for each sex using Analysis of Covariance (ANCOVA, R-studio).

In males, after adjusting for baseline values (ANCOVA, p<0.001, Figure 2A), hTyr rats showed a significantly increased progression in NM-sensitive T1-weighted contrast compared to Sham, as highlighted by a larger mean difference on longitudinal estimation plots. In females, the same analysis showed no differences in NM-sensitive contrast between hTyr and Sham. R2 and R2* did not show any difference between groups, either in males or in females. However, R2’ showed a significant increase in progression in hTyr females compared to sham (ANCOVA, p=0.011, Figure 2B). Total susceptibility was not different between groups (Figure 3A), while paramagnetic susceptibility showed a significant increase in progression in hTyr females compared to sham (ANCOVA, p=0.03, Figure 3B). Finally, while we didn’t find any significant effect of the group on striatal relaxometry or susceptibility metrics, we investigated the correlations between NM-sensitive contrast in the SN and striatal susceptibility. In males, we found a significant effect of the Group on the correlation between nigral NM-sensitive contrast and both χpara (linear model, F(1,23)=10.1, p=0.004) and χdia (F(1,23)=11.3, p=0.003) measured in the striatum (Figure 4).

Increase of NM-sensitive contrast with time confirmed NM accumulation in the SN of hTyr males, as previously reported4. This contrast was absent in female hTyr at 4 months, highlighting an important sex-dependent effect, consistent with recent findings of faster NM accumulation in hTyr males than in females7. Our results suggest that NM-MRI contrast is sensitive to this sex-dependent effect, which could contribute to the specific vulnerability of males in PD. In spite of the absence of NM contrast, our results evidenced accumulation of paramagnetic susceptibility in the SN of hTyr females. The increase of R2’ highlights a mismatch between the apparent and the real transverse relaxation rates, suggesting large sources of iron. In males, we found no significant effect of the group on any susceptibility metrics, suggesting that NM accumulation in the SN does not necessarily induce iron accumulation. However, we found a significant effect of hTyr injection on the correlation between NM contrast in the SN and χpara and χdia in the striatum. This hTyr-induced correlation likely reflects anterograde nigrostriatal degeneration, synchronizing NM accumulation in the SN with iron and myelin in the striatum.

Overall, our results support the potential of NM contrast as a biomarker for PD and suggests χ-separation as a complementary technique for detecting iron accumulation with better sensitivity than QSM.
Jean-Baptiste PEROT (Lausanne, Switzerland) , Rita OLIVEIRA , Adriana FERREIRO , Ines DAOUD , Tommaso PAVAN , Estelle GEROSSIER , Jocelyn GROSSE , Miquel VILA , Ileana JELESCU
11:15 - 12:00 Visit posters PG113-PG122.
Sala de Cambra

"Saturday 03 October"

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C32
10:45 - 12:00

MIS-3
The Sound of Fast MRI: Speed, Acoustics, and Sequence Innovation (MIS)

Moderators: Felix GLANG (other) (Moderator, Graz, Austria), Rita SCHMIDT (Senior Scientist) (Moderator, Rehovot, Israel)
10:45 - 11:03 Expanding the Reach of 3D EPI: Quantitative, Structural, Functional and Beyond. Tony STOECKER (Speaker, Germany)
11:03 - 11:21 Making Fast fMRI Quieter: Acoustic Noise Reduction via Destructive Interference. Rita SCHMIDT (Senior Scientist) (Speaker, Rehovot, Israel)
11:21 - 11:39 Supersonic MRI: Pushing Gradient Performance Beyond Conventional Limits. Edwin VERSTEEG (Assistant Professor) (Speaker, Utrecht, The Netherlands)
11:39 - 11:57 When Pulse Sequences Become Music: Exploring the Sound of MRI. Felix GLANG (other) (Speaker, Graz, Austria)
Sala Petita

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D32
10:45 - 12:00

LTD3-1 Scientific session
MR Spectroscopy Across Scales: Biomarkers for Brain and Body Health

10:45 - 10:48 #53607 - PG193 Non-Invasive Assessment of Neurochemical Changes in GLUT1 Deficiency Syndrome Using ¹H MRS: Technical Report and Preliminary Analysis.
PG193 Non-Invasive Assessment of Neurochemical Changes in GLUT1 Deficiency Syndrome Using ¹H MRS: Technical Report and Preliminary Analysis.

Glucose is the brain’s primary energy substrate and a key carbon source for anabolic processes. Transport across the blood-brain barrier depends predominantly on the GLUT1 transporter. GLUT1 deficiency syndrome (GLUT1DS) is a very rare neurometabolic disorder that impairs cerebral glucose uptake and triggers a cascade of metabolic dysregulations[1]. While the syndrome is well-characterized clinically, its cerebral metabolic correlates remain poorly understood, and no systematic in vivo ¹H-MR spectroscopy studies have been reported to date. This study aims to investigate neurochemical alterations in GLUT1DS using ¹H-MR spectroscopy in the posterior cingulate cortex (PCC) of patients with GLUT1DS.

Ten Glut1DS patients (7 males, 3 females, mean age 30.6 ± 16.1 years) and 9 healthy controls were scanned at 3T Siemens Prisma (data acquisition began at VE11c software and continued after an XA60 upgrade) using a 20-channel head coil. The scanning protocol included MPRAGE and single-voxel MRS sized 45×25×25 mm3 positioned in the PCC region (Figure 1). MEGA-sLASER with TE = 80 ms and TR = 2 s with selective editing pulses at δGABA = 1.9 ppm, δGSH = 4.56 ppm and δOFF = 7.5 ppm was used for detection of GABA+, as well as total creatine (tCr), myo-inositol (mI), glutamate+glutamine (Glx), total choline-containing compounds (tCho) and total N-acetylaspartate (tNAA) from the OFF spectra. sLASER with TE = 144 ms was used for lactate detection. Three unsuppressed water scans were acquired using sLASER at TE = 68, 110, 144 ms with TR = 10 s. Spectra were processed using Osprey [2] (modified for reading in and aligning the OnGABA-OnGSH-OFF subspectra). Spectral fitting was performed using LCModel (v6.3). Metabolite signals for basis sets were simulated as described in [3]. Quantification was performed using standard Osprey pipeline for CSF-corrected values and modified pipeline for molal (absolute) concentrations (water scan at TE = 68 ms was used as reference. Water T2 was calculated using a non-linear fit of the 3 water scans in MATLAB). Group comparisons were conducted using the Mann-Whitney U test, with significance confirmed by the permutation test.

Most of the GSH-edited spectra contained strong stimulated echo signals at the 3.2-3.8 ppm region, producing a distorted baseline and affecting the GSH fitting. Therefore, GSH was excluded from the processing. Representative fitted spectra are shown in Figure 2. The GABA+ spectra contained stimulated echoes at 1.2-1.9 ppm (excluded from fitting using PPMGAP parameter in LCModel), however, these artifacts did not produce any problems for the GABA preprocessing and fitting. OFF spectra were completely artifact-free. Water suppression factor was >99%. Large voxel volume provided sufficient SNR, the linewidth was consistently narrow, quality metrics did not differ significantly between the healthy controls and the patients (see Attachment 1 for details). Compared to healthy controls, tCr concentrations were significantly elevated in patients both at TE = 80 ms and TE = 144 ms (Figure 3A). For mI, both CSF-corrected levels and absolute concentrations were increased (p = 0.036 and p = 0.015, respectively) at TE = 144 ms, while at TE = 80 ms, CSF-corrected mI demonstrated a trend (p = 0.059) that only reached significance after absolute quantification (p = 0.021) (Figure 3A-B). CSF-corrected GABA+ values did not demonstrate significant differences between patients and controls (p = 0.139). However, absolute GABA+ concentrations were significantly higher in the patient cohort (p=0.036, Figure 4C). No statistically significant alterations in patient’s cohort were observed for GSH, tNAA, tCho, Glx and Lac (Figure 4).

To our knowledge, this is the first systematic MRS study of patients with the GLUT1DS syndrome. Elevated mI, being a marker of astrocytic activity [4], could reflect a reactive glial response to chronic energy deficiency. It is worth noting that tNAA levels were unaltered, possibly indicating that neuronal integrity is maintained in the targeted brain region in the studied cerebral area. Elevation of the tCr points at the upregulation of the phosphocreatine energy buffer system in response to impaired hypoglycemia conditions [5]. The observed increase in GABA+ should be interpreted with caution, as the statistical significance is at the borderline considering a small number of subjects. Yet the results may provide insights into GABAergic neurotransmission under GLUT1DS condition, probably playing the role in the epileptic phenotype [6].

For the first time, local cerebral metabolism in GLUT1DS was systematically characterized using ¹H-MRS. Acknowledgment: The MRS package was developed by Edward J. Auerbach and Małgorzata Marjańska and provided by the University of Minnesota under a C2P agreement.
Andrei MANZHURTSEV , Gamze SAKALLI (Frankfurt am Main, Germany) , Sarah JUNG , Seyma ALCICEK , Dennis C. THOMAS , Elke HATTINGEN , Ulrich PILATUS , Johann Philipp ZÖLLNER , Katharina J. WENGER
10:48 - 10:51 #54548 - PG194 ¹H-MRSI Detection of Metabolite Changes in Amyotrophic Lateral Sclerosis Within Intrinsic Connectivity Networks and Deep Gray Matter Nuclei.
PG194 ¹H-MRSI Detection of Metabolite Changes in Amyotrophic Lateral Sclerosis Within Intrinsic Connectivity Networks and Deep Gray Matter Nuclei.

Amyotrophic lateral sclerosis (ALS), the most common motor neuron disease, causes progressive neurodegeneration [1] and is typically diagnosed between ages 55–75 [2]. Despite extensive research, no definitive biomarkers exist, making ALS a major clinical challenge [3]. Proton magnetic resonance spectroscopic imaging (¹H-MRSI) is a non-invasive method for detecting potential metabolic biomarkers of diseases [4]. While most ALS studies focus on motor regions, these areas are functionally connected to a broader array of cortical and subcortical regions that together form intrinsic connectivity networks (ICNs), which show synchronized activity during rest and are thought to underlie cognitive, sensory, and motor functions [5]. Therefore, investigating metabolic changes within ICNs might potentially shed further light on ALS as a multisystem neurodegenerative disease. This study uses ¹H-MRSI to assess metabolic alterations in ALS by comparing metabolic profiles across subcortical brain regions and intrinsic connectivity networks (ICNs) with those of healthy controls. The secondary aim is to investigate correlations between clinical variables and metabolic profiles. This abstract represents the second stage of a registered report submitted to last year's ESMRMB congress.

Thirty ALS patients (mean age: 57.34 ± 9.36 years; 17 F, 13 M; bulbar, cervical, lumbosacral onset, n = 10 each) and 27 healthy controls (HC, mean age: 48.44 ± 10.47 years; 16 F, 11 M) were included in this study. All participants provided written informed consent, and the study was approved by the local Institutional Review Board. ¹H-MRSI data were acquired with a 16x16 multivoxel sLASER sequence (TR=1700 ms, TE=40 ms, NS=1, VOI=80x80x15 mm³) on a clinical 3T Siemens Syngo scanner (Fig.1). T1-weighted (T1w, TR=515 ms, TE=10 ms) and T2-weighted (T2w, TR=6750 ms, TE=104 ms) MRI were also acquired. LCModel [6] was used for metabolite quantification and FSL-BET [7] was used for skull stripping. Oryx-MRSI [8] was used for spectral quality control, tissue segmentation, and image registration (Fig.2). Voxel locations were overlaid onto T2w MRI to create binary metabolite masks, corrected for partial volume effects and registered to MNI space. The MNI152 [9] and Schaefer2018 [10] atlases were used to analyze metabolic profiles at ICNs and calculate metabolic profiles for group-level statistical analysis. Gender differences between groups were analyzed using a chi-square test, and a Mann-Whitney rank-sum test was used to assess metabolic differences between HC and ALS groups in MATLAB. Additionally, metabolic profiles across ALS onset subtypes were compared with a Kruskal–Wallis test followed by Dunn’s post hoc tests. Associations between metabolite ratios and disease duration and age were examined using a Spearman correlation test. Holm’s correction was applied with α = 0.05 as the statistical significance threshold.

Within the somatomotor network (SMN), glutamine+glutamate over total creatine (Glx/tCr) was lower (p = 0.002) at the first subdivision (SMN1) of the ALS group , and taurine over tCr (Tau/tCr) was higher (p = 0.004) at the left-hemisphere frontal operculum/insula (FOI) subdivision of the salience and ventral attention network (SVAN) in the ALS group (Fig.3). In subcortical regions, glutathione (GSH)/tCr (p = 0.005) and myo-inositol (mI)/tCr (p=0.007) were higher in the ALS group at thalamus and caudate, respectively. In the ALS cohort, age correlated positively with Tau/tCr at the thalamus (p = 0.0006), while GSH decreased with age (p = 0.003) in the same region (Fig.4). In the HC group, tCho (p = 0.0004) and tCr (p = 0.0009) at SMN2 were both positively correlated with age. Several other trends did not survive the Holm’s correction.

The observed metabolic alterations align with the network-spread hypothesis of ALS pathology, extending beyond the primary motor cortex into ICNs and deep gray matter. Reduced Glx in the SMN is consistent with prior reports [11] of glutamatergic depletion at later stages, reflecting neuronal loss. Elevated Tau, GSH, and mI ratios match established findings of oxidative stress and altered membrane turnover in ALS [12]. As ALS pathology originates at the motor regions, the SMN having more metabolic changes was expected, whereas the DMN, SVAN and the subcortical regions showed early-stage characteristics, with compensatory increases in antioxidative and neuroprotective metabolites likely to fight oxidative stress and repairing membrane damage. Age-related changes were consistent with progressive oxidative stress and membrane turnover in both groups, underscoring aging as a risk factor for neurodegeneration [13].

This study demonstrates the feasibility and clinical utility of atlas-guided ¹H-MRSI for capturing spatially heterogeneous, network-distributed metabolic changes in ALS. These findings support network-based metabolic profiling as a potential tool for early detection and monitoring of disease progression in ALS.
Arda CANBAS (İstanbul, Turkey) , Sevim CENGIZ , Gokce Hale HATAY , Baris ISAK , Dilaver KAYA , Alpay OZCAN , Alp DINCER , Esin OZTÜRK-ISIK
10:51 - 10:54 #54575 - PG195 Glutathione depletion and symptom-linked glutamate and GABA disruptions in chronic schizophrenia: a 7T DANTE-PRESS MRS study.
PG195 Glutathione depletion and symptom-linked glutamate and GABA disruptions in chronic schizophrenia: a 7T DANTE-PRESS MRS study.

Schizophrenia is a complex psychiatric disorder that has been linked to disruptions in glutamatergic, GABAergic, and redox systems. There is converging evidence that glutamate (Glu), gamma-aminobutyric acid (GABA) and glutathione (GSH) could be related to symptom expression (positive, negative, and/or cognitive) and disease progression.1–4 Among chronic schizophrenia (SZ), observations suggest a triple deficit in Glu, GSH, and GABA but variability arises due to age, medication type, illness duration and methodology used to detect and quantify these biomarkers. Single-voxel proton magnetic resonance spectroscopy (1H-MRS) is a non-invasive in vivo imaging technique used to quantify the concentration of biomarkers such as Glu, GSH, and GABA. Non-frequency-selective techniques (i.e. STEAM, PRESS) techniques often produce complex brain spectra with overlapping resonances that complicate spectral modelling thereby driving up algorithmic variability. Alternatively, metabolite-selective (i.e. MEGA-PRESS or MEGA-sLASER) techniques for GABA detection often require longer scan times for equivalent spectral points, more prone to motion and frequency artifacts, and face lower SNR efficiency5. To address these limitations, we developed double-Delays-Alternating-Nutation-Tailored-Excitation Point-RESolved-Spectroscopy (DANTE-PRESS), a novel single-shot multi-frequency-selective sequence that enhances metabolite specificity by suppressing out-of-passband signals while preserving resonances within the DANTE passband.6,7 This improved spectral specificity may enable more reliable detection of subtle biomarker alterations in psychiatric populations. The objective of this study was to evaluate Glu, GSH, and GABA differences and their associations with clinical and cognitive measures in SZ using single- and double-DANTE-PRESS at 7T.8, 9

Twenty patient-volunteers living with SZ (age= 30.8±5.1, male/female=12/5) and group-matched healthy volunteers (age= 26.3±6.5, male/female=13/6) were recruited for this study (table 1). Patient volunteers were recruited from the referrals received by the PEPP at LHSC and all patients had been diagnosed by psychiatrists based on the DSM-5 criteria. Participants underwent MRI screening and were provided with written, informed consent according to the Human Research Ethics Board for Health Sciences at Western University. All scans were performed on the Siemens-MAGNETOM 7T Plus (Erlangen, Germany) with an 8-transmit-channel/32-receive-channel head-only radiofrequency-coil at the CFMM in London, Canada.10 For T1-weighted anatomical images, the vendor-provided MP2RAGE sequence (works-in-progress-package 925B) was used, with Compressed-Sensing (CS) acceleration [1] and dynamic-parallel-transmission (pTx) RF pulses [2] (FOV: 246x246x168 mm, sagittal-orientation, 0.70 mm iso-volume-voxels, CS-acceleration: 4, flip-angle: 4/5 degrees, TI: 860/2700 ms, TR: 6000 ms)11, 12. The voxel (2x2x2cm3) was placed at the dACC in vivo. A water-unsuppressed spectrum was acquired using 1) PRESS for absolute quantification (TR/TE/AVG/BW=3000ms/96ms/8avg/3000Hz), 2) double DANTE-PRESS was centred on Glu’s 2.35ppm multiplet and GSH’s 3.77ppm simultaneously (TR/TE/AVG/BW/ DANTE pulse FWHM=3000ms/96ms/64avg/3000Hz/56Hz) and then, 3) single DANTE-PRESS was centred on GABA’s 1.89ppm multiplet using the same acquisition parameters. Basis-sets for DANTE-PRESS were generated using FID-A toolbox13. Spectra visualization and metabolite fitting was done using an in-house-post-processing software known as FitMangui14. Partial volume corrections were performed using FSL-FAST15,16.

Using DANTE-PRESS, group mean %CRLB were <6%, <16%, and <12% for Glu, GSH, and GABA respectively with an average linewidth of ~10Hz (figure 1). GSH levels were significantly reduced in patients with SZ compared to healthy controls (Cohen’s d=0.84, p=0.018, q=0.053) and remained significant after controlling for smoking, alcohol use, and cannabis usage (p=0.012) suggesting psychosis-driven oxidative stress (figure 2). Glu concentrations were negatively correlated with symptom severity such as BNSS (r=-0.782, p=0.0006), PANSS-negative (r=-0.745, q=0.017), and PANSS-general (-0.698, q=0.023) scores. Trends toward negative associations between PANSS-negative and 1) GABA (r=-0.458, p=0.0643), 2) GSH (r=-0.460, p=0.0635) and BNSS and 3) GABA (r=-0.478, p=0.0521) and 4) GSH (r=-0.465, p=0.0599).

Our findings where reduced levels of GSH among patients are consistent with prior evidence of redox dysregulation in schizophrenia supporting the continued impaired antioxidant capacity1,17,18. The strong inverse relationship between symptom severity and Glu levels further reinforces the role of glutamatergic dysfunction in negative and general symptoms.17–19

By enabling simultaneous and efficient targeting of multiple metabolites, DANTE-PRESS provides a promising framework for developing robust, multi-metabolite imaging biomarkers in psychiatric disorders.
Kesavi KANAGASABAI (London, Ontario, Canada) , Michael MACKINELY , Betsy SCHAEFER , Omer ORAN , Jean THEBERGE , Lena PALANIYAPPAN
10:54 - 10:57 #54576 - PG196 Single-Shot GABA-Selective Spectroscopy using DANTE-PRESS at 7T: Toward Translational Excitation–Inhibition Biomarkers in Neuropsychiatric Disorders.
PG196 Single-Shot GABA-Selective Spectroscopy using DANTE-PRESS at 7T: Toward Translational Excitation–Inhibition Biomarkers in Neuropsychiatric Disorders.

Gamma-aminobutyric acid (GABA) is the brain’s primary inhibitory neurotransmitter where excitation and inhibition imbalances have been implicated in neurocognitive and psychiatric conditions such as schizophrenia, depression, and Alzheimer’s disease. Single-voxel proton-magnetic-resonance-spectroscopy (1H-MRS) is a non-invasive in vivo imaging technique used to quantify the concentration of brain metabolites. GABA’s low in vivo concentration, overlap with macromolecules, neighbouring abundant metabolites and susceptibility to MRS-technique-related artifacts make it challenging to detect and isolate. GABA detection and isolation is often achieved using j-difference spectral editting; however, spectral editing techniques increase scan time, are more sensitive to motion artifacts, and provide lower signal-to-noise ratios (SNR) efficiency. Alternatively, non-metabolite-selective techniques are optimized for one metabolite but reduce precision of other metabolites1. Finally, non-metabolite selective sequences produce complex spectra increasing algorithmic variability when performing spectral modelling. Therefore, we will be introducing an alternative MRS-protocol isolating GABA using an advanced single-shot frequency-selective sequence known as Delays-Alternating-Nutation-Tailored-Excitation-Point-RESolved-Spectroscopy (DANTE-PRESS)2,3,4. DANTE-PRESS will preserve the signals of interest while suppressing unwanted coherences through a narrow-band frequency-selective refocusing pulse without the use of spectral editing. The objective is to evaluate DANTE-PRESS and present results on its precision when measuring the GABA multiplet at 1.89ppm at 7 Tesla in human brain as an in vivo proof-of-concept.

Three volunteers were recruited for an initial in vivo proof-of-concept with two scans, one at baseline and a day apart. An independent healthy control cohort (n=10) was used to demonstrate GABA detection and estimate precision. All scans were performed on a 7T MR scanner (Siemens MAGNETOM 7T Plus, Erlangen, Germany) with an 8 transmit channel head-only radiofrequency coil and 32 channel receive coil at CFMM at in London, Ontario5. For T1-weighted anatomical images, the vendor-provided MP2RAGE sequence (works-in-progress package 925B) was used, featuring Compressed Sensing (CS) acceleration [1] and dynamic parallel-transmission (pTx) RF pulses [2] (FOV: 246x246x168 mm, sagittal orientation, 0.70 mm iso-volume voxels, CS acceleration: 4, flip-angle: 4/5 degrees, TI: 860/2700 ms, TR: 6000 ms)6,7. The MRS voxel (2.0x2.0x2.0cm3) was positioned at the dACC in vivo. In vivo voxel placement was based on positioning the posterior face immediately against the precentral gyrus and the caudal face directly on the line separating the anterior cingulate and tangential to the corpus callosum (figure 1). A water-unsuppressed spectrum was acquired as a reference for absolute quantification and a water-suppressed spectra was acquired to identify large singlets as in vivo chemical-shift references. The DANTE-PRESS pulse was centered on GABA’s 1.89ppm multiplet and generated online by the pulse sequence. The acquisition parameters of all sequences are outlined in Table 1. For the in vivo proof-of-concept, we scanned participants twice where each scan contained 10 acquisitions to assess within-session variability and repeated a week apart to assess between-session variability. FID-A simulations using a DANTE passband of 56Hz was created to qualitatively assess contributions from co-refocused metabolites. Spectra visualization and metabolite fitting was done using an in-house post-processing software known as FitMangui.8 FitMangui is a time-domain fitting algorithm that uses a non-linear, iterative Levenberg-Marquardt minimizing technique to estimate metabolite chemical shift, concentration, linewidth and phase (0th and 1st order).

DANTE-PRESS selectively refocused the GABA resonance at 1.89ppm while reducing contributions from co-refocused (NAA and NAAG) metabolites and suppressing all signal outside of its passband in phantoms and in vivo (figure 1). In vivo, the inter-individual coefficients of variance of GABA was <13.5% and the mean Cramer-Rao Lower Bounds of GABA was 10.1% (table 2). The observed precision is comparable to J-difference editing approaches at 7T but achieved here using a single-shot acquisition without subtraction.

GABA works in tandem with a network of metabolites such as glutamate and glutathione where these metabolites can help assess the excitation and inhibition imbalances along with the role of oxidative stress in patients with neurocognitive disorders. Improving GABA detection without sacrificing SNR and precision is crucial for investigations of GABA-deficiency in neurocognitive and psychiatric disorders.

This in vivo proof-of-concept demonstrates that DANTE-PRESS can effectively detect and refocus GABA, a low concentration metabolite, thereby simplifying spectral quantification allowing for precise measurements.
Kesavi KANAGASABAI (London, Ontario, Canada) , Omer ORAN , Lena PALANIYAPPAN , Jean THEBERGE
10:57 - 11:00 #54331 - PG197 In vivo deuterium metabolic imaging of the mouse brain at 17.2 T using a ²H CryoProbe.
PG197 In vivo deuterium metabolic imaging of the mouse brain at 17.2 T using a ²H CryoProbe.

Deuterium metabolic imaging (DMI) [1,2] enables non-invasive mapping of substrate uptake and downstream metabolic labelling using ²H-labelled energy substrates such as [6,6′-²H₂]Glucose. However, the application of DMI to investigate the mouse brain is challenging due to the low intrinsic NMR sensitivity of ²H which imposes a compromise between sensitivity, spatial and temporal resolutions. Increasing the magnetic field strength [4,5] and employing cryogenic radiofrequency detection [6] can nevertheless substantially improve ²H sensitivity. Here, we implemented a whole-brain DMI protocol and quantitative analysis pipeline to perform a robust evaluation of brain neuroenergetics in mice at 17.2T using a ²H cryogenic probe.

Experimental Setup. C57Bl6 mice (n = 5, 24 ± 4 g, 3 months old) were kept anaesthetized with an isoflurane/medetomidine mixture (0.8-1.2% / 0.015ml/hr) and placed in a heated cradle with respiration and temperature monitoring. A tail-vein catheter delivered 99%-enriched [6,6′-²H₂]Glucose (Eurisotop, 2 g/kg), using a bolus continuous infusion protocol [2] after baseline DMI acquisitions, over a total dynamic of 120 min. Experiments were performed on a 17.2 T Bruker MRI scanner (85 mm bore, 1000 mT/m gradients, PV360) equipped with a dual-tuned ¹H/²H cryogenic mouse probe, comprising a butterfly loop for ¹H and a single 16 mm loop for ²H. NMR acquisitions. ²H 3D FID-CSI acquisitions were repeatedly performed (9×8×9 encoding matrix, weighted sampling, 2-mm isotropic resolution, TR/TE = 220/0.7ms, 2500Hz spectral bandwidth, 512 complex points, 75° target flip angle, 12 averages) every 5 min 29 s. A late variable-flip-angle (VFA) ²H FID-CSI series was performed for T1 estimation. Anatomical ¹H T2*-weighted multi-gradient-echo images were acquired on the same coil. ²H radiofrequency power calibration was performed over the whole brain. Data reconstruction and quantification. Raw data were processed with an in-house Python-based pipeline including frequency alignment, automated zero- and first-order phase correction and baseline correction. Spectral quantification was done by either peak integration or linear-combination (LC) fitting of simulated FID basis functions: HDO was represented by two fitted water components while [6,6′-²H₂]Glc, glutamate and glutamine (reported as Glx) were fitted with FID basis functions. A pre-bolus HDO internal reference of 13.7 mM was assumed. Saturation correction used the group-mean T1 values measured by the VFA approach [7]. Coefficients of determination (R²) and Cramer–Rao lower bounds (CRLB) were used to estimate fit quality and quantification reliability.

A representative 3D CSI dataset at 100 min post-infusion is shown in figure 1A. A stack of dynamic ²H spectra for the selected voxel is shown in figure 1B, showing a stable natural-abundance HDO resonance before injection and post-bolus emergence of labelled glucose and downstream Glx signals. Both peak integration and LC fitting approaches yield comparable ²H-labelling timecourses, with scan-wise CRLB decreasing from 21.5 to 5–6% as GlxD4 accumulates, while CRLB for GlcD66’ decreased rapidly from 8.4% to ~1–2% (Fig. 2). In the representative mid-dynamic voxel fit, the LC model reached R² = 0.973, with component CRLB values of 1.4% for GlcD66’, 5.7% for GlxD4 and approximately 4% for HDO. GlcD66’ and GlxD4 apparent concentration maps and their respective CRLB maps are shown in figure 3. It illustrates how glucose levels increased rapidly throughout the brain after bolus and stabilized at approximately 2.7–3.0 mM, whereas GlxD4 increased gradually to reach approximately 2.3–2.8 mM at steady-state in a common central voxel (n = 5; Fig. 4). VFA-derived mean T1 values were 313 ms [271–357 ms] for HDO, 68 ms [20–95 ms] for GlcD66′ and 260 ms [220–301 ms] for GlxD4 (Fig. 4).

This pipeline integrates anatomical overlay, automated spectral correction, LC fitting and CRLB-based quality control, providing reproducible apparent-concentration maps and group-level labelling dynamics from raw data. Peak integration provided a simple validation of the LC fitting approach. However the latter offers a more flexible framework for spectral fitting. ²H T1 values measured here at 17.2 T using a VFA approach are in agreement with literature values [2]. As expected, ²H-labelling of lactate was not detectable across our cohort suggesting that our anesthetic mixture did not shift brain energy metabolism towards anaerobic glycolysis [9].

By harnessing the remarkable SNR enhancement provided by the ²H cryogenic RF coil at 17.2T, we demonstrated the feasibility of whole-brain CSI acquisitions at spatial and temporal resolutions compatible with the investigation of neuroenergetics in the mouse brain using DMI. In the future, metabolic pools will be estimated independently from 1H MRS data, yielding fractional-enrichment dynamics for metabolic modelling and TCA cycle flux estimation.
Yacine IBRI (Paris) , Erwan SELINGUE , Gael LE DOUARON , Maxime JAY , Luisa CIOBANU , Dulce PAPY-GARCIA , Sophie FEUILLASTRE , Alfredo L LOPEZ KOLKOVSKY , Fawzi BOUMEZBEUR
11:00 - 11:03 #54367 - PG198 Longitudinal probing of high energy metabolism in cerebral organoids using ³¹P mrs.
PG198 Longitudinal probing of high energy metabolism in cerebral organoids using ³¹P mrs.

Cerebral organoids are three-dimensional cellular structures derived from human induced pluripotent stem cells (hiPSCs) and have emerged as powerful models for studying human brain development and disease [1, 2]. However, their characterization relies almost exclusively on destructive methods, including cryosectioning for histological analysis and dissociation for RNA and protein profiling. Consequently, these approaches prevent longitudinal monitoring of the same organoid over time. This limitation constitutes a major bottleneck in organoid research, given their approximately 30-70 day maturation period [3], their dynamic growth and metabolic changes under diverse conditions, their intrinsic heterogeneity, and high maintenance costs. Addressing this challenge, this work examines the feasibility of Magnetic Resonance Spectroscopy (MRS) for longitudinal assessment of high energy metabolism [4] as a critical measure of cellular metabolic activity and organoid viability.

Two engineering challenges were addressed. First, ³¹P MRS is intrinsically low in sensitivity, and organoid volumes are small (diameter 1–5 mm), yielding a poor signal-to-noise ratio (SNR). Second, organoids are highly sensitive to environmental conditions - oxygen depletion, nutrient loss, pH shifts, and mechanical stress can rapidly cause cell death, often without visible signs. A custom 3D-printed holder was developed (Fig. 1). This device positions organoids close to the ³¹P Cryoprobe, provides a large reservoir of culture medium, and incorporates a modular cage accommodating organoids of varying sizes. The holder can be readily fabricated using standard 3D-resin printing, making it a low-cost and user-friendly solution to monitor organoid viability. Sterility was maintained by using a laminar flow hood and sealing the holder with sterilized parafilm. Temperature was maintained at 35 °C using a circulating water bath with tubing integrated in the body of the holder. 31P MRS was performed on 18-20 cerebral organoids [3, 5] of 3 mm diameter using a 9.4 T animal scanner equipped with a 31P Cryoprobe (Bruker Biospin, Ettlingen, Germany). NSPECT (TR = 1000 ms, flip angle = 59°, NA = 500, scan time ≈ 8.3 min) was used to track ATP signals over 250 min across 3 independent experiments. 31P spectra were reconstructed using a custom python pipeline. Prior to the Fourier transformation, line broadening (Lorentzian, 20Hz) was applied. ATP peaks (α-, β-, γ-) and inorganic phosphate (Pi) were quantified by identifying the peak maximum within an expected chemical shift range and numerically integrating within a ±1.5 ppm spectral width. Additionally, the noise floor was subtracted from the integral.

Initial experiments using standard NMR tubes - typically employed for MRI-based organoid studies – proved incompatible with organoid viability. With the new holder, ATP ³¹P signals were detected in living cerebral organoids. All three phosphate chain resonances of ATP (α-, β-, γ), and inorganic phosphate, were clearly resolved (Fig. 3). This result was replicated across two independent experiments. In the representative experiment shown in (Fig. 4), the mean trend showed a decrease in β-ATP by 49%, γ-ATP by 29%, α-ATP by 13%, while Pi increased by 24%. The method demonstrated robustness across organoid sizes ranging from 1–5 mm.

This study demonstrates the feasibility of longitudinal monitoring of the high energy metabolism of cerebral organoids. Since organoids develop a necrotic core due to cell death, the assessment of viability via visual methods can be misleading. Our approach addresses this limitation and offers a direct biochemical readout for organoid viability. The main challenge was to balance the trade-off between low SNR and scan duration. Since we used a scan time of about 8 minutes for each spectrum, our findings suggest the feasibility of probing smaller organoids or even single organoids.

This proof-of-concept study demonstrates the feasibility of non-destructive, label-free metabolic monitoring of living cerebral organoids. Beyond viability assessment at single time points, we demonstrate longitudinal tracking of organoids which facilitates the study of growth dynamics and metabolic changes over time. Importantly, our approach is not limited to cerebral organoids but can be extended to other organoid systems. Our approach aligns with the 3R principles for the reduction and refinement of animal experiments and provides a foundation for future drug-response and longitudinal metabolic studies.
Florentin MARQUARDT , Yinhao CHEN , Lison GUILLAUME , Paula LEUPOLD , Thomas GLADYTZ , Jason M. MILLWARD , Nikolaus RAJEWSKY , Agnieszka RYBAK-WOLF , Paul FRIEDEMANN , Clemens DIWOKY , Hélène RATINEY , Giorgi ASATIANI , Thoralf NIENDORF , Sonia WAICZIES (Berlin, Germany)
11:03 - 11:06 #54608 - PG199 Lactate accumulation and clearance during plantar flexion exercise measured with ¹H/³¹P MRS at 7 T.
PG199 Lactate accumulation and clearance during plantar flexion exercise measured with ¹H/³¹P MRS at 7 T.

We have shown that an optimized ¹H double-quantum filter (DQF) sequence can isolate (from lipids) and detect the lactate CH₃ doublet in skeletal muscle [1] with 4 s time resolution. When interleaved with ³¹P MRS for measurement of PCr, Pi and intracellular pH, it provides an integrated view of contraction-related metabolism in vivo. Here we focus on characterizing lactate accumulation and post-exercise clearance in both ischaemic and aerobic exercise.

Eight healthy subjects (5f/3m, median age 22 y, range 21–30 y) performed an exercise protocol with 2 min rest, 3 min exercise (3 plantar flexions per TR) followed by recovery (TR = 6 s, 180 measurements). Four subjects performed aerobic exercise, and four ischaemic exercise (with a mid-thigh cuff inflated to 270 mmHg, 60 s before exercise onset until 30 s after exercise cessation. Pedal resistance was adjusted to induce fatigue while still allowing completion of both protocols, with smaller force for the ischaemic sessions. Signal was recorded using a custom-built 9-channel ¹H, 3-channel ³¹P calf coil [2] with average voxel size ≈ 4 × 3 × 7 cm³, placed in gastrocnemius medialis. Lactate was detected using the DQF sequence [1] (average τ₁ = 23.6 ms, average τ₂ = 39.8 ms, τ_m = 10.4 ms). ³¹P spectra were acquired with semi-LASER (average TE, same voxel size). Spectra were fitted using AMARES in jMRUI after SNR-weighted channel combination. PCr and Pi concentrations were derived using T₁, and T₂ and setting [PCr]_rest = 33 mM, [3], pH was derived from the PCr–Pi chemical shift, using an amplitude-weighted average when Pi split. Lactate was quantified against an external 40 mM lithium-lactate phantom (T₂ = 1.18 s, J = 6.91 Hz) using an in vivo estimate of T₂ = 138 ms and J = 16.6 Hz [1]). Lactate accumulation was modelled as a linear increase, anchored from the time of maximum pH (onset of acidification) to peak lactate concentration. Post-exercise lactate clearance was modelled as mono-exponential decay (time constant τdec), from cuff release for ischaemic exercise. For PCr was fitted as mono-exponential decay during exercise (time constant τ_dec) and bi-exponential recovery.

By ³¹P MRS, PCr declined mono-exponentially during exercise, depleting to 85–94 % (aerobic exercise) and 96–99 % (ischaemic exercise) with τ_dec = 19–43 s aerobic, 42–94 s ischaemic (R² = 0.97–0.99), and recovered bi-exponentially (R² = 0.99–1.00). Early alkalinisation was followed by acidification down to pH 6.2–6.3 (aerobic) and 6.3–6.5 (ischaemic). Pi was split in all subjects, with up to 3 distinct peaks. Metabolite time courses averaged over the 4 subjects per session type are shown in Fig. 1. Lactate was detectable in all eight sessions. Lactate accumulation was well described by a linear increase (average R² = 0.77, range 0.52–0.91), with accumulation rate 0.05–0.08 mM/s in aerobic and 0.05–0.13 mM/s in ischaemic sessions. Peak lactate concentrations ranged from 9.7 to 14.6 mM (aerobic) and 8.9 to 17.3 mM (ischaemic), occurring between –12 s to 30 s relative to exercise end. Post-exercise clearance followed a mono-exponential decay (R² = 0.78–0.97), with τ_dec = 267–383 s in aerobic and 210–595 s in ischaemic sessions, corresponding to initial clearance rates of 0.03–0.04 mM/s and 0.02–0.06 mM/s, respectively). For representative data (time courses and fits) see Fig. 2.

The interleaved ¹H/³¹P acquisition resolved and quantified lactate alongside pH and phosphate metabolites with 6 s time resolution during exercise and recovery. The early alkalinisation (6–24 s) is consistent with net H⁺ consumption in the Lohmann reaction [4], before glycolytically-produced protons drive the subsequent acidification. These preliminary results do not take account of the influence of B₁⁺ or fiber orientation distribution (which modulates lactate splitting via dipolar coupling) on lactate quantification; both were measured, but remain to be incorporated into the analysis. Thus, the reported lactate concentrations likely represent a lower bound. Extension to full stoichiometric proton balance modelling, as in [5] (Eq. 10: ΔH⁺ load = Δ[lactate] − ∫γ d[PCr]), requires robust quantification of lactate. This will be pursued after further refinement of the lactate quantification.

Simultaneous ¹H/³¹P MRS at 7 T enables time-resolved quantification of lactate, PCr, Pi, and pH during aerobic and ischaemic exercise in a single acquisition, providing a foundation for comprehensive skeletal muscle bioenergetic modelling.
Vasco Rafael ROCHA DOS SANTOS (Vienna, Austria) , Graham J. KEMP , Kostiantyn REPNIN , Veronika CAP , Peter WOLF , Roberta FRASS-KRIEGL , Martin MEYERSPEER
11:06 - 11:09 #54388 - PG200 Normoxic and hypoxic high-intensity exercise illustrates no age-related differences in skeletal muscle oxidative metabolism: A ³¹P-NMR spectroscopy in humans.
PG200 Normoxic and hypoxic high-intensity exercise illustrates no age-related differences in skeletal muscle oxidative metabolism: A ³¹P-NMR spectroscopy in humans.

Ageing is associated with a progressive decline in muscle function, yet the underlying metabolic alterations remain incompletely understood. It has been suggested that regular physical activity and more recently high-intensity exercise coupled to hypoxia can be beneficial for elderly subjects [1][JR2.1][DB2.2]. However, the corresponding effects on muscle energetics have not been reported. ³¹P-NMR spectroscopy provides a non-invasive method to assess in vivo changes in high-energy phosphorylated metabolites and pH during transitions from rest to exercise and from exercise to rest [2]. In the present study, we comparatively assessed muscle energetics changes in physically active young (Y) and elderly (Eld) adults submitted to standardized rest-exercise-recovery protocols.

Healthy and active (Leisure Score Index >25) participants matched on body weight and physical activity (Y, n=13; Eld, n=9) completed two randomized rest-exercise-recovery sessions conducted under normoxic (N) (FiO₂=20.9%) and hypoxic (H) (FiO₂=13.0%) conditions. ³¹P-NMR experiments were conducted at 3T while subjects were in the prone position within the scanner. The ankle of the dominant leg was attached to a dedicated ergometer [3]. Knee extension contractions were performed repeatedly over 1.5s (0.5s rest). Exercise consisted in maximal isometric voluntary contractions. ³¹P-NMR spectra were recorded from the quadriceps muscle throughout the standardized rest (2 min), exercise (12 s) and passive recovery (6 min) protocol. PCr changes during the exercise to rest transition were used to compute indices of oxidative metabolism.

Young subjects developed a larger force (175 ± 51 N) as compared to elderly (115 ± 56 N; p= 0.005) with no effect of oxygenation. As expected, exercise resulted in PCr consumption (EldH= 23.8 ± 5.0%; EldN= 25.1 ± 5.3%; YH= 24.5 ± 4.4%; YN= 26.5 ± 8.7%) while pH slightly increased (EldH= +0.11 ± 0.04 pH; EldN= +0.12 ± 0.04 pH ; YH= +0.11 ± 0.03 pH; YN= +0.09 ± 0.05 pH) and ADP increased (EldH= +23.7 ± 6.8 µmol/L; EldN= +24.7 ± 6.1 µmol/L; YH= +23.7 ± 5.6 µmol/L; YN= +23.7 ± 10.2 µmol/L). The corresponding alkalinization was significant for all groups and conditions. No Age effect was identified during the exercise phase for PCr, Pi, pH and ADP changes. In addition, no significant effect of oxygen Condition nor Age×Condition interaction was observed for any metabolic variable throughout exercise. During the recovery phase, the whole set of metabolic variables returned to their pre-exercise values. The initial rate of PCr recovery ViPCr was significantly faster in elderly (0.43±0.16 mmol⋅s⁻¹) compared to young subjects (0.32±0.09 mmol⋅s⁻¹; p=0.050) respectively. The corresponding values were similar in hypoxia and normoxia. Vmax values computed from ADP-based values were similar between groups (0.80±0.25 vs 0.85±0.24 mmol⋅s⁻¹; p=0.625) indicating similar oxidative capacity regardless of oxygen condition.

Our results illustrate that for a standardized short high-intensity intermittent exercise, PCr and pH changes were similar between young and older subjects and so regardless of oxygen availability. In addition, while ViPCr was faster in the older group, the maximal aerobic capacities were similar between the groups. Results related to ViPCr may appear contradictory to what has been reported so far in highly aerobic exercise for which the PCr recovery time constant was slightly but significantly shorter in younger subjects at least under normoxic conditions [4]. This disagreement may be explained by the highly ischemic nature of our exercise protocol. It has been largely recognized that ischemic conditions may occur as a result of an increased intramuscular pressure when contraction intensity and frequency are high. In that case, regardless of oxygen conditions, our exercise would be ischemic and similar changes in normoxic and hypoxic conditions would then be expected thereby indicating a preserved aerobic function in older subjects [4]. Furthermore, the age-related shift towards a higher proportion of type I oxidative fibres and increased capillary-to-fibre ratio in elderly skeletal muscle [5] would favour faster microvascular reperfusion upon contraction cessation, providing a structural basis for the higher ViPCr observed in older subjects independently of intrinsic mitochondrial capacity.

In physically active older adults, skeletal muscle oxidative metabolism during short high-intensity isometric exercise appears preserved regardless of age and oxygen availability.
Josep REBULL BARRERA (Marseille) , Marie NIVET , Yann LE-FUR , Christophe VILMEN , Grégoire MILLET , Thomas RUPP , David BEN DAHAN
11:09 - 11:12 #54478 - PG201 Comparative NMR profiling of human synovial fluid: search for biomarkers of early-onset osteoarthritis.
PG201 Comparative NMR profiling of human synovial fluid: search for biomarkers of early-onset osteoarthritis.

Severe irreversible tissue damage occurs early in the osteoarthritic (OA) disease process, prior to the onset of radiographically observable changes. Since the degradation by-products of OA are released from the cartilage matrix into the synovial fluid (SF), joint fluid analysis provides information about the metabolic status of a specific joint. High-resolution nuclear magnetic resonance spectroscopy (NMRS), is particularly well suited to the assessment and quantification of wide variety of low molecular weight metabolites present in body fluids such as SF. Studies of osteoarthritic SF suggest that a number of metabolic changes occur in the joint with OA onset. The purpose of this study was to investigate these changes using 1H NMRS to compare the metabolic profiles of normal human synovial fluid with that from early-stage OA.

Synovial fluid samples were collected from patients undergoing arthroscopic debridement for knee osteoarthritis and kept at -800 C pending processing. The degree of OA severity was assessed and documented at arthroscopy [1]. Forty-one samples from age- and sex-matched subjects were analyzed: 21 Normal/control samples [median age: 28 years] and 20 from the Mild OA cohort [median age: 31 years]. Samples were made-up in a 60:40 ratio of SF:D2O in 5 mm NMR tubes for a total volume of 600 μl. Data were acquired on a Varian 12T system (500.011 MHz-1H) using the CPMG pulse sequence D - 90x - (τ - 180±y - τ )n - acquire (D=3 sec, τ = 1ms, 2nt= 48 ms, acquisition time = 1.333 sec, 256 scans, 16,384 data points, spectral width 6000 Hz) using gated pre-saturation. The raw spectra were zero-filled to 262 K data points, phase-corrected, baseline corrected and calibrated with respect to the TSP signal from the internal/external capillary reference at 0.0 ppm. Spectral profiling was done using the CHENOMX NMR Suite v26 software. SF peak assignments were made using the CHENOMX 500 MHz compound libraries, published literature and characteristic spin–spin coupling patterns. Between-group differences in age and sex were tested using the Wilcoxon rank sum test and Fisher's exact test, respectively. The CHENOMX-quantitated relative concentrations of 46 metabolites, four macromolecular species and three lipid ratios CH3/CH2, CH3/CH and CH2/CH were compared between Normal controls and Mild OA groups using t-tests with a Bonferroni adjustment applied to p-values to control for multiple testing (p < 0.001 considered significant).

Of the 50 synovial fluid metabolites profiled, 16 exhibited statistically significant (p<0.001) differences between the Normal/control and Mild OA cohorts. The levels of glucose, glycerol, carnitine, choline; the amino acids lysine, leucine, isoleucine, valine, histidine, glutamine and glutamate; and the mobile components of CH3-terminal end and CH=CH groups of lipoproteins, choline headgroup components of high density lipoproteins and mobile components of hyaluronic acid (N-acetyl-glycoproteins) were all found to be significantly different in mild OA relative to normal human synovial fluid (p<0.001), as shown in Figures 1(a) and (b).

Our results indicate that the metabolic profile of synovial fluid from patients in early-stage OA differs markedly from that of normal controls. Increased glucose levels are linked to OA progression, inflammation and cartilage degradation. The increase in CH3 & CH=CH group levels of fatty acids and mobile lipids in early OA reflect cartilage breakdown and lipid peroxidation leading to a loss of joint lubrication through the degradation of hyaluronan. Similarly, increases in the N-acetyl-glycoprotein signal intensity correlate with an elevation in the concentration of mobile components of hyaluronic acid, consequent to the degradation of this substance into smaller polymeric units with OA progression. The levels of the branched amino acids, valine, leucine and isoleucine, are likewise increased reflecting their role as markers of joint inflammation and cartilage breakdown in OA.

In summary, this study indicates a number of distinct metabolic processes are altered already in early OA, reflecting inflammatory and degenerative chondrolytic changes acting concurrently within the joint.
Andrei DAMYANOVICH (Toronto, Canada) , Lisa AVERY , Wayne MARSHALL
11:12 - 11:15 #54509 - PG202 Partial respiratory gating to mitigate the impact of respiratory motion on in vivo human liver 31P MRSI.
PG202 Partial respiratory gating to mitigate the impact of respiratory motion on in vivo human liver 31P MRSI.

31P Magnetic Resonance Spectroscopic Imaging (MRSI) scans of the human liver are susceptible to distortions due to respiratory motion [1]. These effects can be mitigated by applying respiratory gating; however, because ~50% of the transients are rejected, this typically doubles acquisition time [2]. This is undesirable, as acquisition time is already a major limiting factor for 31P MRSI scans. We investigated whether applying respiratory gating to only a subset of acquired k-space points and acquiring the remaining points non-gated reduces motion-induced distortions with a smaller increase in scan time, and to determine which and how many k-space points should be acquired with gating.

MR data was acquired with a 7 T system (Philips Healthcare, Best, The Netherlands), equipped with a double tuned 2H/31P whole-body birdcage RF transmit coil and using a 16-channel 31P receive array with 8 integrated 1H transmit/receive dipole antennas, positioned around the torso and centered on the liver in the feet-head direction. First, 1H MRI was performed for B0 shimming and anatomical imaging. 31P MRSI was performed using a 3D free induction decay-MRSI sequence with the following parameters: voxel size = 20x20x20 mm3, FOV = 300(AP)x500(LR)x340(FH) mm3, TR = 60 ms, TE = 0.50 ms, FA =12°, spectral bandwidth = 5000 Hz, and 256 data points. The MRSI sequence was repeated to acquire 15 times the full k-space (NSA=15), while the subject was visually guided to follow a box-breathing pattern (5 sec maximal inhale, 5 sec hold, 5 sec full exhale, 5 sec hold). From the first 12 k-space acquisitions, a gated scan was retrospectively created with NSA=3 by extracting for each k-space point the first 3 acquisitions that occurred during a breath hold after exhale, based on acquisition time. From the remaining 3 k-space acquisitions, all acquired data points were combined to create a non-gated scan with NSA=3 (Fig 1A). Next, partial gating was simulated by combining k-space points from the non-gated scan and points from the gated scan for a number of different configurations shown in Fig 1B-C. In all configurations, 515 or 516 points were gated. In addition, configurations with varying numbers of centrally gated k-space points were created (Fig 1D). To determine the resulting scan time reduction in practice, we reduced the NSA of peripheral k-space points, to simulate a more realistic scenario of a Hamming-weighted acquisition with NSA=3 in the center. In addition, a second respiratory gated liver scan (Hamming-weighted with NSA=3 in the center) was acquired as reference. The data were processed using an in-house developed MATLAB script (Matlab R2024b, MathWorks, USA) and involved Hamming-weight correction (if applicable), PCA-based denoising, Roemer equal noise channel combination, and spectral fitting with AMARES using OXSA [3-6]. A 3D liver mask was manually drawn on the T1-weighted images. For voxels inside the mask, signal-to-noise ratio (SNR, defined as the signal intensity of α-ATP divided by the standard deviation of the noise between 10-20 ppm), fitted linewidth (LW), and fitted γ-ATP, PDE, and PME amplitudes were evaluated.

Configurations with few or no gated center k-space points resulted in severely reduced SNR and broader LW, and configurations containing more centrally located gated points better approximated the SNR and LW of the fully gated scan (Fig 2A-D). Figures 2E-F show that for the central sphere, from 16% gated k-space points onward, the SNR and LW became almost equal to those of the fully gated scan. These improvements are evident in the example spectra (Fig 3). In addition, from 16% onward, the average difference in metabolite amplitudes of γ-ATP, PDE, and PME with the gated reference scan were in the same order as the differences between the fully gated and the reference gated scan. This also holds for the variation in voxel-wise difference, which is an indicator for regional differences in metabolite amplitudes between scans (Fig 4).

The better performance of acquiring the central k-space points gated, as opposed to peripheral k-space points, can be explained by the dominance of low spatial frequencies in determining signal intensity. Assuming double acquisition time with gating, acquiring 16% of the points with gating leads to a 16% increase in scan time. As we investigated a worst case with deep breathing, fewer gated points may suffice in a typical free breathing pattern, which could be confirmed in an in vivo prospective study.

Even when breathing deeply, similar spectral quality and metabolite quantification repeatability as in a fully gated 31P liver scan can be achieved by acquiring only 16% of k-space points located in the center with respiratory gating, and the remainder non-gated. This approach can be applied in practice to mitigate the effects of respiratory motion with only a relatively small increase in scan time in clinical and research settings where full respiratory gating is too time-consuming.
Maaike KONIG (Utrecht, The Netherlands) , Germen WENNEMARS , Mark GOSSELINK , Dennis KLOMP , Jeanine PROMPERS , Woutjan BRANDERHORST
11:15 - 12:00 Visit posters PG193-PG202.
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Poster 10
FT10 Motion & Artifacts | Image Reconstruction | AI-Driven Segmentation

11:15 - 12:00 #54269 - P408 Deep learning-informed rigid-body motion correction for fMRI using a 3D convolutional neural network.
P408 Deep learning-informed rigid-body motion correction for fMRI using a 3D convolutional neural network.

Functional magnetic resonance imaging (fMRI) is sensitive to subject motion during timeseries data acquisition, the effects of which are increased at 7T due to higher spatial resolution. Although retrospective correction reduces inter-volume motion effects, prospective motion correction (PMC) enables real-time volume updates which reduces post-processing time. These advantages are increased with deep learning-based solutions, which predict motion parameters rather than performing real-time registration. Convolutional neural networks (CNNs) can be optimized as direct regression networks for image registration, mapping complex spatial intensity patterns straight to a rigid-body parameter vector with six degrees of freedom [1,2]. By avoiding the time-consuming iterative optimization loop of traditional intensity-based alignment, these architectures offer the sub-millisecond inference speeds required for PMC. This abstract presents preliminary results from the application of a deep neural network to the task of estimating motion parameters in fMRI datasets in preparation for real-time implementation.

Dataset: Training data was constructed by simulating motion in 37 resting-state fMRI scans from Autism Brain Imaging Data Exchange’s (ABIDE) ETH-Zurich dataset. Each fMRI time-series has 210 volumes of 80 H x 80 W x 40 slices with 3.0mm isotropic resolution. Ground-truth, motion-affected volumes were created by applying independent motion events to a series of echo-planar imaging (EPI) timeseries volumes using randomly generated rigid-body motion parameters in the range [-1,1] voxels and degrees. A 70:10:20 train-test-validation split was applied. Network and training: Using PyTorch, a 3D rigid image registration CNN was trained to predict the six rigid-body motion parameters used to transform a reference volume to a motion-affected volume. This was implemented using a convolutional feature extractor and a fully connected regressor. The model was trained over 100 epochs with learning rate 1e-3, Adam optimizer, Mean Squared Error (MSE) loss, batch size 2, and early stopping after 10 epochs without improvement. Evaluation: The CNN’s performance was assessed by using the predicted motion parameters to correct moving volumes in the test set and comparing them to the corresponding reference volumes using Mutual Information (MI), normalized root mean square error (NRMSE), structural similarity index measure (SSIM), and motion parameter residuals, as well as performing visual checks.

Figure 1 shows training and validation loss progression over 75 epochs, after which training was truncated due to the early stopping requirement being met. The curves both decrease throughout and remain convergent, indicating effective and efficient training. Visual comparison of reference volumes and prediction-corrected volumes (Fig 2) show low deviation between them, with small structures still visible and identifiable. While this implies that correcting motion using CNN-predicted motion parameters yields similar performance to traditional image registration, the small scale of simulated motion makes it difficult to discern minute differences in the results. Distributions of MI, NRMSE, and SSIM are shown in Figure 3. MI has a range of [0.918, 1.494], mean 1.191, standard deviation (SD) 0.087; NRMSE has range [0.069, 0.426], mean 0.196, SD 0.055; SSIM has range [0.981, 0.998], mean 0.992, SD 0.003. Low values of NRMSE and high values of SSIM both indicate good information match between co-registered volumes, and the distribution of MI characterize the shared information between volumes. Residuals of ground-truth vs predicted motion parameters (Fig 4) show narrow spreads across the six degrees of freedom. The histograms are all centred around means in the range [-0.038, 0.047] and have standard deviations between 0.063 and 0.114. Compared to a sampled range of [-1, 1] voxels and degrees of translation and rotation, respectively, the scale of residuals indicates good approximation of the predicted motion parameters to their respective ground-truth parameters.

Future work will optimise the CNN architecture and use the trained model for real-time motion estimation on a 7T MRI scanner.

Prospective motion correction in fMRI can be accelerated further using deep learning. A simple CNN which predicts rigid-body motion parameters from reference and moving volumes was developed as the first stage in implementing deep learning-based PMC methods in the MRI scanner.
Yiling HU (Glasgow, Scotland, United Kingdom) , Fani DELIGIANNI , David PORTER
11:15 - 12:00 #54551 - P409 Comparing accelerated encoding strategies for Multi-echo Gradient Echo Quantitative Imaging free of physiological artifacts.
P409 Comparing accelerated encoding strategies for Multi-echo Gradient Echo Quantitative Imaging free of physiological artifacts.

Respiration-induced B0 fluctuations affect multi-echo GRE (MEGRE) images, especially at later echo times[1], severely impacting derived R2*, QSM and Myelin Water Imaging[2]. The effects of cardiac cycle, brain pulsatility [3] and motion [4] further impact image quality. Here, we explore accelerated acquisitions relying on wave encoding, data-driven B0 correction and disordered sampling [5] to achieve physiological robustness under the following hypotheses: (H1) Wave encoding [6] enables higher acceleration than cartesian sequences also on standard clinical coils (<32ch); (H2) Using complementary k-space under-sampling [7] reduces noise of quantitative maps and their sensitivity to physiological states.

Using Pulseq[8], we developed a MEGRE sequence accelerated by wave encoding [6] and Complementary Poisson Disk sampling (CPD)[7], incorporating a B0 navigator (Fig 1B). To evaluate the contribution of each of these components, rather than comparing them after being acquired serially, we interleave their acquisition, enabling direct comparison under quasi-identical motion and physiological conditions. K-space was covered in rounds to allow for retrospective motion correction and undersampling by simply cropping the acquisition (Fig 1A). We tested the following MEGRE sequences with 3 participants (2 sessions), on a 3T Siemens Prisma system, using standard 20-channel head-neck receiver coil, to demonstrate applicability in clinical settings: a) Interleaved (21min, Fig 1B): 6 echo MEGRE, res=1x1x1mm, FOV= [0.96 0.29 0.20], TR= 46ms, TE1/∆TE/TE6= 4.2/6.4/36.2ms, k-space traversed in 48 rounds of 200 excitations; b) Standard (7min): Equivalent to the first interleaved sequence but with ordered sampling; c) Reference: Fully-sampled cartesian GRE for coil sensitivity; d) Wave calibration to remove ghosting artifacts (Fig 2C). Both Interleaved and Standard acquisitions were obtained with a Variable Density undersampling (R=6). Image reconstruction used BART[9], with the interleaved data retrospectively under-sampled to R=[9,12]. R2* and QSM maps were generated with SEPIA[10], and test-retest repeatability was assessed pixel-wise in brain and cerebellar ROIs (as defined by SynthSeg[11]). Cross-session correlation and coefficient of variation (CV)[12] were computed per ROI for the 3 interleaved sequences with and without B0 correction.

The B0 navigator captured breathing and slow scanner drift (Fig 2B, particularly important at wave frequencies close to mechanical vibrations), resulting in improved long TE reconstructions (Fig 2A). Although not always visible on the derived R2* and QSM maps (Figs 3A,C), B0 correction reduced CV in most ROIs, especially in the standard acquisition (Fig 4A). Further benefits are seen on the voxel-wise correlation of R2* values across sessions (Fig 4C). H1: Wave encoding outperformed linear Cartesian sampling, reducing aliasing and improving edge definition (Fig 3B). It also showed lower NRMSE across echoes under retrospective acceleration (Fig 2D), with advantages reflected visually and in cross-session correlations (more pronounced for R2* than QSM, Figs 3B,D; 4C,E). ROI-based CV (Figs 4A,D), however, showed no clear difference. H2: Echo-shifting (here with complementary Poisson-disc sampling) did not reproduce the previously reported[3] extent of R2* SD reduction across acquisitions (~0.2 vs 2), attributed to cardiac noise. Improvements to the quantitative maps (Fig 3B) might be rather related to the complementary aliasing of successive echoes.

We explored the impact of different acceleration and physiological noise removal for clinically feasible QSM. B0 correction through a navigator embedded within the spoiler gradient effectively mitigated respiratory noise and scanner drift (qualitative and quantitatively), even with cooperative participants. The benefit of wave encoding was reflected on the NRMSE, especially at higher acceleration factors, in respect to its linear counterpart. The interleaved sequence design allowed for a controlled and systematic comparison of subtle effects under identical physiological and motion conditions. However, it increased scan duration, amplifying intra-scan motion. Disordered [5] sampling enables integrated motion tracking, but it increases motion susceptibility, rendering our interleaved reconstructions worse than the standalone ordered one (Figs 2E, 4A). The reduced effect of changing the sampling pattern across echoes (H2 [7]) may reflect our lower SNR (higher resolution and acceleration), cross-session rather than within-session comparison, or stem from the disordered acquisition (randomly distributes physiological states in k-space).

Navigator-based B0 correction and CPD improve QSM, particularly at higher acceleration factors. While the interleaved disordered acquisition enabled fair comparisons, it introduced motion sensitivity. Future work will focus on retrospective motion correction and optimising wave size to better reach the expected benefits.
Eva GUZMÁN CHACÓN (Nijmgen, The Netherlands) , Mojtaba SHAFIEKHANI , Maxim ZAITSEV , Berkin BILGIC , Marcel ZWIERS , Martijn CLOOS , David G. NORRIS , José P. MARQUES
11:15 - 12:00 #54722 - P410 Radar-based respiratory signal processing for the detection of respiratory rate and apnea events.
P410 Radar-based respiratory signal processing for the detection of respiratory rate and apnea events.

Radar-based sensing systems offer a promising contactless approach for monitoring physiological signals such as respiratory motion and heart activity. In medical applications, the non-invasive detection of respiratory rate and apnea events is of particular interest for patient monitoring and sleep-related diagnostics. The aim of this work was to investigate the processing and analysis of radar-based respiratory signals for the determination of respiratory frequency and respiratory pauses.

Respiratory measurements were performed using a radar module positioned at different distances from the subject. The recorded radar signals were processed and analyzed using MATLAB®. Measurements were acquired for normal breathing as well as simulated respiratory pauses. The signal processing workflow included respiratory signal detection, offset and trend correction, signal filtering, peak detection, and frequency-domain analysis. A Butterworth low-pass filter with a cutoff frequency of 0.4 Hz was applied to reduce noise and improve signal quality. Respiratory frequency was determined using both time-domain peak analysis and Fourier transformation. Respiratory pauses were identified by analyzing the temporal differences between detected signal peaks.

The processed respiratory signals enabled reliable detection of respiratory activity and apnea events. Peak detection showed good agreement between the counted respiratory cycles and the automatically detected peaks. The calculated respiratory frequency was approximately 0.35–0.375 Hz, corresponding to approximately 22.5 breaths per minute. In measurements containing respiratory pauses, the detected apnea duration showed strong agreement with the experimentally observed pause duration. Frequency-domain analysis confirmed the dominant respiratory frequency obtained from the time-domain analysis.

The results demonstrate that radar-based respiratory monitoring combined with signal processing techniques allows reliable extraction of respiratory parameters from contactless measurements. Signal preprocessing steps such as detrending, filtering, and peak detection significantly improved the detectability of respiratory patterns. Minor deviations between detected and observed respiratory events may be related to motion artifacts, environmental interference, or limitations in radar signal sensitivity.

This work demonstrates the feasibility of radar-based respiratory signal processing for the contactless determination of respiratory frequency and apnea events. The combination of radar sensing and MATLAB-based signal analysis represents a promising approach for future non-invasive respiratory monitoring systems and medical sensor applications.
Amira ALOUANE (Hagen, Germany)
11:15 - 12:00 #54629 - P411 Initial experience with 4D MRI on a Philips radiotherapy MR Simulator.
P411 Initial experience with 4D MRI on a Philips radiotherapy MR Simulator.

For non-gated radiotherapy (RT) of abdominal targets respiratory motion must be characterised to add appropriate margins to the clinical target volume (from imaging at a single respiratory phase) to create the internal target volume (covering expected CTV position throughout respiration). Conventionally this has been achieved by 4D-CT. However, lesions are often difficult or impossible to see on 4D-CT so, along with increased adoption of MR-CT/MR-only RT pathways, there is a growing need to characterise such motion by MRI [1].

A 4D MRI patch (Philips clinical investigation device) using CS accelerated 3D VANE (stack of stars) acquisition has been installed on our 1.5T Philips Ingenia MR-RT Simulator. The underlying sequence is T1 weighted but can be augmented with SPAIR fat suppression and/or MSDE T2-preparation. An mDIXON variant generates in/out-of-phase, fat and water images. An intrinsic navigator detects the motion state for each shot which is used for binning as well as for profile weighting and bulk motion correction (of which, relative contributions can be adjusted). GRADE phantom (Spectronic Medical) large FOV distortion assessment was performed using default scan parameters. 5 healthy volunteers were scanned - 2 for sequence familiarisation, then 3 witha fixed protocol with non-augmented T1w sequence during regular and deliberate irregular breathing. 2D coronal & sagittal dynamic scans (5fps temporal resolution) were interleaved to provide independent (but not concurrent) motion assessment. 4D sequences were reconstructed with motion weighting of 10, 20 (default) and 50% (lower values = lower motion tolerance) to assess impact on image quality and motion fidelity. 6 liver patients were scanned, immediately after RT planning MRI (very delayed Primovist enhanced) or in a separate study (non-enhanced). For patient scans all contrast settings (non-augmented T1w, T2-prep, SPAIR, T2-prep+SPAIR, mDIXON) were acquired and images reviewed by a clinician team (consultant radiologist and oncologist). All scans were acquired over 6.5 minutes.

The scans ran successfully (including during irregular breathing), generating datasets with 10 respiratory phases (fig 1) plus mid and average positions. Separated dynamic phases imported into our Raystation treatment planning system (TPS), and GRADE distortion results were acceptable (<1.5 mean marker displacement within 200mm from isocentre). Visual image quality was generally acceptable with default parameters. Comparing different contrast weightings (fig 2), the non-augmented T1w sequence was generally seen as most promising for tumour/liver delineation while MSDE T2-prep was felt to offer some benefit for other organ boundaries and bile duct visualisation. Streaking was visible and more prominent in phases during active inspiration/expiration, with irregular breathing, or with lower motion tolerance (fig 3). Breathing amplitudes in regular breathing (measured at the top of liver dome) averaged 15mm measured by 2D MRI, and were observed to vary by up to 11mm between respiratory cycles within the same dynamic scan. The observed migration of the same landmark from 4D MR (with 20% motion weighting) averaged 11mm, and were 3-6mm smaller than mean measurements by 2D MR for the same patient. 4D results were typically similar to the shallowest breaths observed during the 2D scans. The measured displacement in 4D MR reduced with increasing motion weighting (up to 6 mm difference from 10 to 50%).

Preliminary results are promising in terms of ease of use, geometric accuracy and TPS compatibility. Clinician feedback on image quality has been generally positive for tissue subject to respiratory motion, although boundaries of organs with non-periodic motion are less clear, so shorter 3D sequences may remain preferred for contouring bowel. Visual image quality varied inline with expectations throughout the respiratory cycle, with varying motion tolerance, and with regularity of breathing pattern. A tendency for underestimation of landmark displacement compared to 2D real-time imaging was observed, with a trend for smaller displacements to also be measured at higher motion tolerances suggested that visual image quality gains realised by increasing this parameter may be offset by reduced motion fidelity (missing extremes of motion). The underestimation compared to 2D MR was of similar magnitude to the variability seen within 2D scans and interpretation of 4D MR data must consider that the images produce a representative respiratory cycle from data acquired over an extended period during which natural variation is expected.

Based on a small number of healthy and patient scans, initial 4D MRI patch experience has been positive. Further testing is needed to confirm initial trends, in terms of quantitative motion measurements and image quality/contrast preferences. These results will inform local clinical implementation of the forthcoming product sequence and further refinement by Philips.
David BROADBENT , David BIRD , Louis HOLLICK , Jack GAPE , Shona WHITTAM , Helen SHEPHERD , Samuel GREENWOOD-WILSON , Gerald SCHUBERT , David HIGGINS (Leeds, United Kingdom) , Bashar AL-QAISIEH , Richard SPEIGHT
11:15 - 12:00 #54161 - P412 Echo-wise N4 / clustering approach for bias correction in multi-echo GE-SE EPIK data.
P412 Echo-wise N4 / clustering approach for bias correction in multi-echo GE-SE EPIK data.

Magnetic Resonance Imaging is often affected by a low spatial frequency intensity nonuniformity, also known as a bias field, usually caused by B1-field inhomogeneities. While multiple methods exist for bias field correction, the N4 algorithm has established itself as a standard tool for this purpose [1]. A recently developed GE-SE EPIK sequence for fast simultaneous T2 and T2*-quantification via mixed Gradient-Echo and Spin-Echo contrasts [2] exhibits considerable bias field-like artifacts in T2*- and subsequently calculated Oxygen Extraction Fraction (OEF)-maps (Figure 1A, C). Because multiple refocusing pulses are used, the usually TE-independent bias field varies between the echoes, and the standard approach of assuming the same bias field for every echo proved insufficient in testing. In this abstract, we instead propose an echo-wise approach for bias correction in GESE-EPIK data. Furthermore, because an independent echo-wise application of N4 risks introducing inter-echo variation not accounted for by the signal model, we test a k-means clustering based smoothing step intended to average out these variations.

An initial MP-PCA denoising was performed [3-4]. Next, SimpleITK’s N4 [5] was executed on skull-stripped magnitude data for each echo independently. Finally, similar to previous clustering applications for denoising [6], scikit-learn MiniBatchKMeans [7] was used to group voxels with similar signal decay curves calculated relative to their signal intensity in the first echo. The cluster number was set to 300 after empirical testing. The values in all voxels of a cluster were then set to their respective echo median, providing non-local smoothing over the signal decay curves. This pipeline was performed on GE-SE EPIK data from three clinical patients, acquired on a 3T Siemens Prisma, with different pathologies and strength of ghosting artifact to evaluate the pipeline impact on robust as well as abnormal imaging data and performance under sub-optimal conditions. The majority of acquired data is represented by the mild-artifact case. Quantitative maps were fitted via a non-linear least squares algorithm on the denoised data, after the N4-, and after the k-means clustering-step. Resulting histograms’ FWHM were compared, and residuum analysis was performed.

Quantitative maps fitted after the complete pipeline show strong visual reduction of artifact intensity (Figure 1B). Artifact reduction was less effective in patients with stronger ghosting but still showed significant improvement (Figure 1D). Visual quality was similar before and after the clustering step. FWHM of relaxometry histograms in a whole-brain ROI was reduced in all patients after N4-correction, with a further reduction after clustering (Figure 2). Figure 3 shows comparative histograms after each pipeline step in an example patient with low ghosting. Macroscopic anatomical detail as well as pathological signal intensities were preserved, with Figure 4 showing the affected region in a tumor patient. Furthermore, fit residuals were lowered after N4, with a further reduction after clustering (Figure 2B).

The findings of this proof-of-concept work show the improvements from the application of an echo-wise N4 bias field correction in GE-SE EPIK data. The additional clustering shows no visual quality improvement, but numerical analysis shows a benefit in reduction of both FWHM and residuals compared to pure N4 application. Although stronger ghosting reduced pipeline performance, T2*- and especially OEF-map quality was still improved compared to uncorrected data. With the uncorrected maps being strongly affected by artifacts, this approach could markedly increase accuracy as well as robustness of GE-SE EPIK data for use in further clinical studies. Reduced residuals after N4 application suggest that the echo-wise application does not introduce artificial deviations from measured decay curves, in which case the subsequent clustering step might simply function as a conventional denoising tool. Important to note is the preservation of pathologic features when present, which are not affected by the processing pipeline, providing a promising quantification tool for clinical applications [8]. Limitations of this study include the small sample size and the lack of external validation. In the future, simulations with ground truth data under different strengths of inhomogeneity effects and in-vivo comparisons against conventional mGRE- and mSE-sequences should be performed to ensure result validity. Furthermore, this bias correction approach could prove valuable in other sequences that include multiple refocusing pulses.

Echo-wise N4 is effective for bias correction in affected GE-SE EPIK data, with subsequent k-means based smoothing providing further reduction in FWHM and residuals. Significant artifact reduction in T2* and OEF maps with preservation of pathological features strengthens the robustness of the GE-SE EPIK approach.
Viktor LINNENWEBER (Aachen, Germany) , Fabian KÜPPERS , Jule DEITERS , Dimah HASAN , Martin WIESMANN , N. Jon SHAH
11:15 - 12:00 #54604 - P413 Sequential versus joint optimization of partially dynamic B₀ shimming.
P413 Sequential versus joint optimization of partially dynamic B₀ shimming.

Dynamic shim updating (or DSU), i.e., the serial application of slice-optimized B0 correction fields in synchrony with the MRI application, has been shown to outperform static/global B0 shimming even with the same coil hardware [1–4]. However, specific amplifier hardware for rapid field switching and advanced preemphasis techniques for eddy current correction are required for slice-wise switching [3,5–7]. Partially dynamic B0 shimming, in which higher-order static shimming is combined with dynamic first-order terms [3,8–10], has been described as an attractive compromise. While not as powerful as full DSU, partially dynamic shimming can be achieved with existing scanners because gradient systems, i.e. the first-order terms, are designed for fast switching. In practice, the computation of optimized shim fields requires estimating one set of static higher-order shim settings that remains fixed during the measurement, together with dynamic first-order shim settings that change from slice to slice. To date, implementations of the concept employed a simplified sequential optimization in which a global static first- and second-order shim analysis was used to estimate an overall second order correction, followed by a slice-by-slice dynamic first-order analysis. It remains unclear, however, how this approach compares to the strict analysis in which all terms are optimized simultaneously. Although spherical harmonic functions are orthogonal, this does not necessarily imply identical solutions in discrete anatomical regions of interest (ROIs) with slice-wise terms and a varying number of pixels. This work compares sequential and joint optimization strategies for partially dynamic B0 shimming.

Two strategies were compared. In the sequential strategy, a global static second-order spherical harmonic fit was first performed on the original B0 map. The residual was then used as the target for a slice-wise dynamic first-order fit. In the joint strategy, global static second-order terms and slice-wise dynamic first-order terms were optimized simultaneously in a single analysis using the original B0 map (Figure 1). The comparison was performed on measured brain maps at 4T, measured cardiac maps at 3T, randomized spherical harmonic fields on spherical and cylindrical ROIs, and morphologically combined brain and cardiac maps. The primary metric was residual field standard deviation. Percent improvement was calculated as the reduction in residual standard deviation for joint optimization relative to sequential optimization.

Joint optimization produced consistently lower residual standard deviation than sequential optimization, but improvement was modest. Mean improvement of joint over sequential optimization was 1.92% for brain maps, 2.65% for cardiac maps, 0.19% for 50 randomized spherical harmonic fields on a sphere, 0.10% for 50 randomized spherical harmonic fields on a cylinder, 1.88% for the morphologically combined brain maps, and 2.26% for the morphologically combined cardiac maps (Table 1). The improvement was minimal in synthetic challenges but larger in vivo maps, suggesting that joint optimization may be most relevant under realistic anatomical conditions. Qualitative differences between the residual maps were spatially structured and became more apparent when displayed at narrower color scales (Figure 2).

The modest but consistent improvement from joint optimization suggests that sequential optimization is a close approximation, but not the exact solution to the ROI-weighted static-dynamic shim problem. However, the absolute improvement was typically only on the order of 1 Hz, suggesting that the practical benefit of joint optimization may be limited.

Joint optimization provided a small but consistent improvement over sequential optimization. While the sequential approach appears sufficient in many cases, optimizing the static and dynamic shim settings together may offer a slight performance advantage.
Isabelle ZINGHINI (Vienna, Austria) , Yun SHANG , Christoph JUCHEM
11:15 - 12:00 #54504 - P414 Diffusion-Prior-Based Reconstruction and B0 Field Correction of Knee MRI under Simulated Low-Field Distortions.
P414 Diffusion-Prior-Based Reconstruction and B0 Field Correction of Knee MRI under Simulated Low-Field Distortions.

Low-field MRI provides a cost-effective and accessible alternative to conventional high-field systems, but image quality is often limited by low SNR and strong B0 inhomogeneity. In severe cases, field variations of thousands of ppm cause signal modulation, blurring, and geometric distortions that complicate anatomical interpretation, as shown in Figure 1. Several deep-learning approaches have been proposed to address related reconstruction and correction problems, including [1] and [2]. We investigate whether diffusion priors [3] can be adapted for MRI reconstruction and phase correction of distorted knee MRI data under severe low-field conditions. Our approach builds on BlindDPS [4] by replacing the deblurring forward model with an MRI signal model that explicitly incorporates B0-induced phase evolution, while the kernel prior is replaced by a differentiable polynomial representation of the field.

We simulated distorted knee images from complex fastMRI [5], [6] data by applying synthetic B0 field maps during a Cartesian readout. The field maps were generated using third-order polynomial basis functions. A comparison between the simulated field maps and measurements from the PreLoRI system (based on the OSII v2.1 [7], Fraunhofer MEVIS) is shown in Figure 2. This representation allows for realistic low-field inhomogeneity patterns while keeping the parameterization compact. A forward model with a dwell time of 20 μs for a cartesian sequence was used, corresponding to a 5 ms readout approximately and a 50 kHz bandwidth for a 256 × 256 image. The diameter of the spherical volume was set to 15 cm for field evaluation, consistent with the expected knee size [8]. The BlindDPS framework, which was originally developed for the blind deblurring of natural images, was adapted to jointly estimate the undistorted complex image and correct inhomogeneity map. To simulate inaccuracies in measured maps, the algorithm was initialized with a perturbed version of the ground-truth field. Instead of a blur kernel, the unknown degradation variable is represented by polynomial fieldmap coefficients. At each reverse diffusion step, the image estimate is guided by a diffusion prior trained on complex fastMRI knee images, while the fieldmap estimate is updated through data consistency with the distorted measurements. The fastMRI images were cropped to 256×256 to match the diffusion model input resolution. Priors were trained on full train set of fastMRI knee data and evaluated on full validation set.

The adapted BlindDPS method reconstructed anatomically plausible knee images and reduced distortion artifacts caused by severe simulated B0 inhomogeneity, as shown in Figure 3. Image reconstruction quality improved from an initial MSE of 0.052±0.017 to 0.037±0.015, while SSIM increased from 0.15±0.06 to 0.21 ± 0.08. For the field-map estimation, the MAE decreased from 871 ± 416 Hz to 809 ± 357 Hz, indicating moderate refinement of the initial B0 estimate.

These preliminary results suggest that diffusion-prior-based blind or partially blind reconstruction is a promising strategy for low-field MRI, where strong inhomogeneity and reduced SNR limit conventional reconstruction quality. However, robust convergence of the full field map and preservation of fine anatomical consistency remain open challenges. Compared with BlindRedDiff [2], our approach investigates applicability to more severe distortions, which more closely represent Halbach-based LF-MRI. Future work will evaluate the method on real low-field data, investigate generalization across anatomies, and explore test time adaptation of the priors.

We presented an adaptation of BlindDPS for joint image reconstruction and B0 inhomogeneity correction in knee MRI. By combining a complex image diffusion prior with a differentiable MRI forward model and a compact polynomial field representation, the method can reduce severe simulated low-field distortions and reconstruct plausible anatomy. These findings motivate further development of diffusion-prior-based correction methods for low-field MRI.
Kostiantyn LAVRONENKO (Aachen, Germany) , Matthias KNAPP , Marcel OCHSENDORF , Rüveyda YILMAZ , Marian FREI , Felix DAHMS , Emilia YIN-GROßMANN , Yannick KUHL , Volkmar SCHULZ
11:15 - 12:00 #54148 - P415 Design of a Universal Passive Shim for Improved B0 Homogeneity in Human Head MRI at 7T.
P415 Design of a Universal Passive Shim for Improved B0 Homogeneity in Human Head MRI at 7T.

Correction of B0 inhomogeneity is a persistent challenge in ultra-high-field MRI, especially in the human head, where susceptibility differences around air–tissue interfaces can lead to local field distortions that lead to signal loss and image artifacts [1,2]. In radio-frequency transmission, similar subject-to-subject variability has motivated the development of universal RF pulses and universal RF shims, which are designed once using a database of individual subject field maps and can then be applied without subject-specific calibration [4–8]. Inspired by this idea, we explore whether a similar concept can be applied to B0 correction: a universal passive shim that is fixed in design but improves field homogeneity across different human heads.

We simulated Bz field distributions at 7T for eight anatomically distinct human head models using CST Studio Suite [3]. The passive shim was designed using iron strips positioned around the head, as shown in Figure 1. For each candidate position, the strip contribution to the B0 field was calculated and used to build an influence matrix. A least-squares optimization was then performed to find a single fixed shim configuration that minimized the overall B0 ppm variation across all head models. In contrast to subject-specific shimming, the same optimized shim layout was applied to every model, making the approach population-based and subject-independent.

Unshimmed versus shimmed plots of various human heads provided by CST are shown in Figure 2. The universal passive shim achieved an 11.5 ppm average reduction across the simulated head models. Compared with the unshimmed case, the shimmed field profiles showed a clear reduction in broad ppm variation, with the residual field values generally compressed into a narrower range. Some localized peaks remained after shimming, suggesting that a fixed, universal design cannot fully correct every subject-specific susceptibility feature, but can reduce field-error patterns that are common across the population.

These results suggest that universal passive B0 shimming is feasible. The concept follows the same logic as universal RF pulses and RF shims: instead of optimizing for a single subject, the correction is designed to work reasonably across many subjects [4–8]. Population-based B0 shim hardware has also been explored in multi-coil systems, showing that shim designs can be informed by field-map databases and tested across different subjects [1]. Our work extends this idea to a passive, fixed, and electronics-free shim design. While a universal passive shim is not expected to outperform fully subject-specific shimming, it may offer a practical compromise between improved B0 homogeneity and workflow simplicity.

We demonstrate a simulation-based universal passive shim using iron strips for human head MRI at 7T. The optimized design achieved an average reduction of 11.5 ppm in B0 ppm variation across multiple head models. By translating the population-optimized idea behind universal RF shimming to passive B0 correction, this approach could provide a simple baseline shim strategy for ultra-high-field MRI without requiring subject-specific passive shim design.
Damini SURESH BABU (Jülich, Germany) , Jörg FELDER , N. Jon SHAH
11:15 - 12:00 #53435 - P416 Fast External Calibration of Spectral Coverage for Multispectral MRI near Metal.
P416 Fast External Calibration of Spectral Coverage for Multispectral MRI near Metal.

Large metallic implants cause strong local frequency perturbations [1] which requires Multispectral Imaging (MSI) sequences, e.g. Multi-Acquisition Variable Resonance Imaging Combination (MAVRIC) [2] or Slice Encoding for Metal Artifact Correction (SEMAC) [3], to reduce metal-induced artifacts by extending conventional signal encoding over a broad frequency spectrum. The required spectral coverage depends on the implant material, geometry, orientation and field strength and is often unknown a priori [4,5]. To this end, Kaushik et al. [4] proposed a ~1 minute external calibration scan to estimate the required frequency coverage for sufficient artifact suppression. The objective of this work was to implement a substantially accelerated external calibration scan based on a joint approach of coherent (CAIPIRINHA (CAIPI) [6]) and incoherent (compressed sensing (CS) [7]) undersampling in combination with deep learning (DL) reconstruction [8]. Our approach was evaluated in two phantoms containing metal hardware.

Phantoms: Two phantoms were investigated: (i) a total hip arthroplasty (titanium stem and cup with a cobalt–chromium femoral head) mounted in a 3D‑printed holder [9], and (ii) a metal plate (titanium) supported by plastic bricks. Both phantoms were embedded in gadolinium‑doped water. MRI: MSI data were acquired on a 1.5T MRI scanner (MAGNETOM Avanto fit; Siemens Healthineers AG, Forchheim, Germany) equipped with a 32/18-channel spine/body coil, and acquisitions were performed in the coronal plane. The imaging parameters were derived from [4]: TR/TE=2090/8ms, voxel size=3.5x3.5x8mm^3, FOV=400x400x248mm^3, bandwidth=1953Hz/pixel, 24 spectral bins, bin separation/bandwidth=1000Hz/2250Hz. A 2×2 CAIPI acceleration (R_CAIPI) with 12×16 autocalibration lines and an acquisition time of 56s served as reference. Acquisition and Reconstruction: Figure 1A shows sampling patterns with CAIPI and combined CS and CAIPI (CS-CAIPI) undersampling. R_CAIPI of 2x2, 3x2 and 4x2 were additionally subsampled using a variable density Poisson disc pattern [10] with R_CS = 1.5 … 10. To further shorten acquisition times, the number of autocalibration lines was reduced to 12x12 (Figure 2). All spectral bins were reconstructed using a joint DL CS-CAIPI framework: after initial FISTA CS reconstruction [11], a DL-based SENSE reconstruction inspired by variational networks generates images within six iterations of data consistency updates and network-based image enhancement, with additional regularization applied along the bin direction [8,12,13]. Off-Resonance Frequency Maps: After off-resonance frequency computation (Figure 1B) [4], lower and upper cutoff values were estimated within a manually placed ROI using the 0.1 and 99.9 percentiles of the frequency distribution. The required number of spectral bins was then derived from the cutoff interval assuming a 1kHz bin separation. CS-CAIPI-accelerated acquisitions were compared with the reference (R_CAIPI =2x2) using root‑mean‑square error (RMSE) and normalized RMSE (NRMSE) (MATLAB R2025b, MathWorks).

Figure 2 summarizes the estimated off-resonance frequency ranges, the number of spectral bins, and RMSE/NRMSE. For the total hip arthroplasty phantom, calibration time was reduced by ~60% from 56s to 22s using R_CAIPI=3x2 with R_CS=10 and 12x12 autocalibration lines, yielding the same number of calibrated bins as the R_CAIPI =2x2 reference (NRMSE = 1.8%). Figure 3 shows off-resonance frequency maps and corresponding histograms for various undersampling patterns. For the metal plate phantom, only R_CAIPI=3x2 with R_CS=2 yielded the same calibrated spectral coverage, corresponding to a 30% reduction (39s) in acquisition time and NRMSE = 2.5% (Figure 4). Higher acceleration factors underestimated the spectral range.

An external calibration scan [4] can determine the number of spectral bins or SEMAC encoding steps for optimal metal artifact suppression, however, the additional acquisition time may limit its clinical adoption. We demonstrate that a novel approach of CS-CAIPI undersampling in combination with DL reconstruction substantially accelerates the scan while allowing accurate spectral calibration. Calibration time was reduced by 30–60% depending on implant geometry, e.g. only 22s for the hip implant while keeping the number of bins constant. The proposed sampling and reconstruction approach can also be applied to high‑resolution MSI acquisitions.

CS-CAIPI sampling in combination with DL reconstruction enables fast and accurate external frequency calibration for optimal metal artifact suppression using MSI. The short scan time of the calibration scan is attractive for clinical workflow optimization.
Jeanette Carmen DECK (Zurich, Switzerland) , Vittoria BANCHIERI , Mathias NITTKA , Dominik PAUL , Marcel Dominik NICKEL , Constantin VON DEUSTER , Reto SUTTER
11:15 - 12:00 #54144 - P417 Magnetic field imputation using gaussian process regression.
P417 Magnetic field imputation using gaussian process regression.

Magnetic resonance imaging (MRI) critically depends on the application of accurate gradients for spatial encoding. In practice, imperfections of the gradient system can lead to geometric distortions and ghosts. Recent advances in field monitoring systems, such as NMR-based field cameras, enable direct measurement of the spatiotemporal magnetic field evolution during an MRI acquisition. Practical limitations arise due to a finite NMR probe recovery time. When it exceeds the repetition time (TR) of the MRI sequence, only a subset of k-space shots can be measured directly, while the remaining shots must be estimated from the measurements (Fig. 1). For simple Cartesian acquisitions, linear interpolation may be sufficient. For more advanced acquisitions, such as pseudo-random or non-Cartesian trajectories including spirals, linear models may become inaccurate. To address this limitation, we propose a Gaussian Process Regression (GPR) framework for the estimation of unmeasured shots. GPR is a probabilistic method that models correlations between measurements to predict unknown values. This approach may extend the applicability of field monitoring to a wider class of MRI sequences.

The proposed GPR framework models the relationship between nominal and measured trajectories using Gaussian processes. The inputs are the nominal k-space locations obtained from the MRI sequence, while the targets are the measured solid harmonic expansion coefficients obtained from our field camera (Skope, Switzerland). In the GPR approach [2-4], the prediction of an unmeasured shot is given by Eq. (1). Here, c0 is the correlation vector between the measured shots and the unknown shot (Eq. (2)), C is the correlation matrix between all measured shots (Eq. (3)), and y contains the measured field coefficients for a given channel. The correlation matrices are computed using a kernel function (Eq. (4)). Function hyperparameters define the similarity between k-space locations. In this work, a squared exponential kernel was chosen to reflect the smooth spatial variation of the magnetic field.

The results for the Cartesian acquisition with five echoes are shown in Fig. 2. The k-space trajectories were cropped to the acquisition windows. For evaluation, one shot was randomly selected from the subset of acquisitions with corresponding field monitoring measurements, allowing direct comparison of predicted and measured trajectories. The blue markers represent the predicted trajectories, while the red markers correspond to the measured trajectories. The predictions include both the zeroth-order field term, which describes global B0 field variations, and the first-order field terms, which represent the spatially linear gradient fields used for spatial encoding. Excellent agreement between the predicted and measured trajectories can be observed across all echoes. The results for the spiral acquisition with a single echo are shown in Fig. 3. Again, the predictions show remarkable agreement with the measured data, demonstrating that the proposed approach can accurately recover both Cartesian and non-Cartesian trajectories from sparse field monitoring measurements. The method also captures gradient cross-term interactions responsible for the kz component of the spiral trajectory.

An important advantage of the proposed GPR framework is its flexibility through the choice of the kernel function. Different kernels or kernel combinations can be designed to reflect known physical properties of the trajectory, such as smoothness, periodicity, or anisotropic behavior along specific k-space directions [2,3]. Although GPR is computationally demanding for large datasets due to the inversion of the covariance matrix, several efficient approximation strategies exist [2,3]. Low-rank approximations, sparse Gaussian process methods, and iterative solvers such as conjugate gradients can substantially reduce the computational burden while maintaining high prediction accuracy. Kernel functions typically contain hyperparameters controlling properties such as correlation length and signal variance. These parameters can be optimized by maximizing the marginal likelihood of the observed data, enabling adaptation of the model to different acquisition schemes and scanner characteristics [2-4].

This work demonstrates that GPR enables accurate interpolation of incomplete field measurements in MRI acquisitions. The proposed framework successfully reconstructs both Cartesian and non-Cartesian trajectories and captures spatial correlations in k-space that cannot be modeled by linear interpolation. These results suggest that GPR can significantly extend the practical use of field monitoring systems in MRI sequences where continuous acquisition is limited by probe recovery constraints.
Julian KLOIBER (Vancouver, Canada) , Alexander JAFFRAY , Cameron CUSHING , Alexander RAUSCHER
11:15 - 12:00 #54621 - P418 Assessment of Imaging Sequences and Off-Resonance Reconstruction Using the gammaSTAR Framework in a Highly Inhomogeneous Low-Field MRI System.
P418 Assessment of Imaging Sequences and Off-Resonance Reconstruction Using the gammaSTAR Framework in a Highly Inhomogeneous Low-Field MRI System.

Low-field (<0.3 T) is a rapidly growing field in magnetic resonance imaging (MRI), offering the potential for low-cost and portable imaging solutions in point-of-care applications. However, the reduced magnetic field strength is associated with increased B₀ inhomogeneities, which can lead to geometric distortions, off-resonance artifacts, and reduced image quality. To address these challenges, distortion-aware reconstruction and B₀ characterization methods have become increasingly important in low-field MRI research. This work investigated the adaptability of gammaSTAR [1], a scanner-agnostic MRI pulse sequence development framework, to a custom-built low-field MRI system, DeLoRI (based on the OSII v2.1 [2]) operating at 47 mT. Furthermore, an established B₀ mapping and distortion-correction framework [3] was implemented and evaluated on the proposed system under highly inhomogeneous low-field conditions.

The permanent-magnet Halbach system was interfaced with a modified OCRA console [4]. Imaging experiments were performed on the OSII-HelloWorld [2] standard phantom, filled with water and copper sulfate, using an in-house build version of the OSII RF coil [5] tuned to a resonance frequency of 2 MHz. A previously developed gammaSTAR- MAgnetic Resonance COntrol System (MaRCoS [6, 7]) server wrapper [8] was used together with an acquisition pipeline combining calibration steps, acquisition pulse sequence, and image reconstruction supporting ISMRM Raw Data format storage [8, 9]. Calibration measurements were carried out before each acquisition utilizing a gammaSTAR 1D spin echo sequence for the Larmor frequency sweeping and Flip Angle calibration. Conventional sequences were tested: rapid acquisition with refocused echoes (RARE), fast low-angle shot (FLASH) and balanced steady-state free precession (bSSFP). RARE sequences were tested with global excitation pulses and tuned gradient ramp time versus slice-selective pulses with no additional tuning, whereas classical FLASH and bSSFP were tested without additional tuning. Sampling window delay was also adjusted to suppress further image artifacts. Raw acquisition data were post-processed using a block-matching algorithm (BM4D) [10] for denoising. Finally, a RARE sequence with a time-shifted readout gradient of 150 us [3] was used to acquire a ∆B0 map, which was then incorporated into conjugate phase reconstruction (CPR) and model-based (MB) image reconstruction.

3D RARE sequence with global excitation showed good signal-to-noise ratio (SNR) (Figure 1) and acceptable acquisition times. During all measurements, a virtually monofrequency electromagnetic interference (EMI) signal was visible in the frequency encoding as a line in the image field of view. A 70° flip angle was selected for the slice-selective gradient echo sequence (Figure 1). In contrast, the bSSFP sequence (Figure 1) exhibited visually good SNR while being heavily affected by banding artifacts. Reconstruction with ∆B0 maps with CPR and MB were able to partially compensate for some of the distortions caused by the strong B₀ inhomogeneities (Figure 3, 4).

Conventional MRI sequences implemented in gammaSTAR were successfully demonstrated on a custom low-field MRI scanner. At this stage of development, acquisitions were performed without dedicated linear gradient shimming. The evaluation primarily focused on the RARE, FLASH and bSSFP sequence because of their potential for future in vivo low-field MRI applications. However, images acquired with bSSFP sequence still exhibited banding artifacts and reduced signal uniformity caused by the strong off-resonance conditions of the system. Preliminary results highlighted the need for further acquisition and reconstruction optimization in highly inhomogeneous environments. Additional investigation of slice-selective RF pulses and alternative pulse shapes will be required to improve robustness against B₀ and B₁ field variations. Furthermore, continued hardware and software optimization is required to reduce EMI contributions affecting image and reconstruction quality. Proof-of-concept ΔB0-informed reconstructions demonstrated the feasibility of off-resonance characterization in the proposed low-field system. Future work will focus on gradient non-linearity correction and the integration of temperature-dependent field drift models into the reconstruction framework.

The DeLoRI system was evaluated using optimized acquisition sequences and dedicated sequence protocols implemented within the gammaSTAR framework. As a proof of concept, preliminary image reconstruction incorporating ΔB0 mapping was performed in a system characterized by strong field inhomogeneities. The approach demonstrated initial improvements in distortion mitigation, while also emphasizing the need for more robust acquisition and reconstruction strategies capable of compensating for multiple sources of artifacts and system imperfections for accurate imaging in ultra-low-field MRI systems.
Juela CUFE (Bremen, Germany) , Daniel Christopher HOINKISS , Jörn HUBER , Simon KONSTANDIN , Kostiantyn LAVRONENKO , Marcel OCHSENDORF , Volkmar SCHULZ , Matthias GÜNTHER
11:15 - 12:00 #54385 - P419 GRICS-torch – an open-source PyTorch implementation of the GRICS motion-corrected reconstruction algorithm.
P419 GRICS-torch – an open-source PyTorch implementation of the GRICS motion-corrected reconstruction algorithm.

Hybrid motion-corrected MRI reconstruction methods that combine the reliability of classical physics-based algorithms with the performance of AI-driven approaches are emerging [1]. Most of these methods rely on AI-based estimation of motion parameters, which are then incorporated into a conventional SENSE-like [2] MRI reconstruction. In contrast, the GRICS algorithm [3] jointly estimates both the motion-corrected image and the motion model based on physical assumptions. In this work, we present GRICS-torch, an open-source PyTorch [4] implementation of GRICS designed to provide the physics-based foundation for future hybrid motion-corrected MRI reconstruction methods.

The GRICS algorithm. GRICS is a multiresolution optimization algorithm that performs several Gauss-Newton (GN) iterations at each resolution level. Each GN iteration alternates between image reconstruction and motion-model estimation steps, solved using the conjugate gradient method: (1a) ρ = argmin||E(α)ρ − s||² + λ||ρ||² (1b) δα = argmin||J(ρ,α)δα − ε||² + μ∙R(α) where ρ denotes the motion-corrected image and α the motion-model parameters. E(α) is the motion-dependent MRI encoding operator, and s represents the acquired k-space data. The residual term ε corresponds to the data-consistency error obtained after 1a. J(ρ,α) denotes the Jacobian of the encoding operator with respect to the motion parameters, R(α) is a regularizer, and δα is the motion update. For rigid motion, α consists of translation and rotation parameters. For non-rigid motion, the displacement field is modeled as a linear combination of physiological signals weighted by α-matrices. Implementation. The code was developed using PyTorch with CUDA [5] support. The current version includes 2D and 3D rigid and non-rigid motion correction of fully sampled MRI, as well as sampling and motion simulation. Motion simulation is performed by applying transformations in image space and sampling subsets of k-space lines for each motion state. The “realistic” simulation mode applies an independent motion state to every k-space line. For rigid motion, the number and duration of motion events can be specified, with realistic translation and rotation ranges [6]. For non-rigid motion, respiration is simulated using a sinusoidal signal, and the displacement field is obtained by modulating a respiratory-like deformation model (e.g. Fig. 2i). Validation. Rigid-motion correction was validated using 2D (128×128) and 3D (128×128×64) Shepp-Logan phantoms with simulated interleaved Cartesian sampling. For non-rigid motion, 2 free-breathing supine breast MRI datasets with respiratory bellow signals [7] were used: 20 T2w 2D volumes (288×475, 60-68 slices) and 12 T1w 3D volumes (160×218×56). Two types of experiments were performed: (i) correction of simulated “realistic” motion and (ii) correction of real respiratory motion. For simulated motion, 20 random rigid-motion patterns were applied to the 2D and 3D phantoms, and random respiratory-like motion was applied to each of the 20 motion-corrected 2D breast MRI datasets. For real-motion correction, GRICS-torch performance was compared with GRICS++ [8], a previously validated implementation written in C++ with CPU parallelization [9]. All experiments were performed on a workstation with two AMD EPYC 75F3 CPUs, 1024 GB RAM, and an NVIDIA A100 PCIe 40GB GPU. Reconstruction quality was assessed using structural similarity (SSIM) and normalized root mean square error (NRMSE) when ground truth was available. The non-reference sharpness index (SI) [10] was calculated in all cases.

A summary of the simulated-motion experiments is presented in Fig. 1, with representative reconstructions shown in Fig. 2. For non-rigid motion, all quality metrics improved significantly after correction. For rigid motion, visual assessment and SI showed an enhancement after correction, and the mean SSIM increased, whereas NRMSE was higher for the corrected images. For real-world non-rigid motion correction, GRICS++ and GRICS-torch achieved comparable SI values. All datasets except one outlier were successfully corrected. In 2D multislice reconstruction, GRICS++ was faster; in 3D reconstruction, GRICS-torch was faster (140 s vs 649 s on average). A summary of these results is shown in Fig. 3, and representative reconstructions are presented in Fig. 4.

Although rigid motion correction was less robust than non-rigid correction, GRICS-torch performed well in most simulated cases. The unexpected increase in NRMSE after correction is likely related to intensity redistribution and requires further validation on real head MRI data. Proposed implementation is particularly promising for 3D non-rigid motion correction, where it provided both good reconstruction quality and substantial speedup.

The GRICS-torch implementation enables MRI reconstruction with rigid and non-rigid motion correction. We hope that this project will facilitate the development of new hybrid motion-corrected reconstruction algorithms.
Karyna ISAIEVA (Nancy) , Henri WITTE , Ziad AL-HAJ HEMIDI , Gabriela HOSSU , Freddy ODILLE
11:15 - 12:00 #54609 - P420 Accelerated 3D radial multi-echo reconstruction with a deep unrolled network.
P420 Accelerated 3D radial multi-echo reconstruction with a deep unrolled network.

Aim: To investigate if the simultaneous processing of multiple echoes in an unrolled reconstruction network increases quality compared to single-echo reconstruction due to inter-echo information that can be learned as a prior in the multi-echo case. In search of more efficient MRI protocols, deep learning (DL) methods have emerged. DL methods are able to learn the mapping from undersampled k-space data to fully sampled images, allowing faster reconstruction times and robust performance in mitigating diverse artifacts and noise [1]. Unrolled optimization models iteratively optimize the reconstruction process [2, 3, 4]. There are not many unrolled networks for non-Cartesian k-space reconstruction. The Nonuniform Variational Network [3] was the first, designed for non-Cartesian single-coil single-echo 2D MRI reconstruction. ME-NC-PDNet (Multi-Echo Non-Cartesian Primal Dual Network) is an unrolled optimization algorithm for MRI reconstruction which extends on the NC-PDNet introduced in [5]. Here, we apply ME-NC-PDNet to reconstruct undersampled 3D radial MuPa-ZTE [6] data. MuPa-ZTE is the 3D Silent Multi-Parametric Mapping with Zero Echo Time Acquisition that obtains one PD-, one T2- and three T1-weighted images in a segmented manner, with extremely low acoustic noise due to minimal gradient switching [7,8]. Our hypothesis is that joint reconstruction allows exploiting this shared information, improving image quality compared to single-echo reconstruction. Here, results are presented on multi-echo reconstruction of 4-fold and 8-fold undersampled 3D synthetic MuPa-ZTE data and compared to the single-echo reconstructions.

NC-PDNet unrolls the proximal gradient descent. The reconstruction optimization problem is solved iteratively [5, 9]. In our multi-echo case the optimization problem is as shown in figure 1a. A schematic representation of the ME-NC-PD network is presented in figure 1b. On top of a multi-echo reconstruction estimate, a buffer is carried over different iterations to learn a nonlinear acceleration scheme. Each iteration, k-space data consistency (DC) is followed by image space regularization by a convolutional neural network (CNN) consisting of 3 convolutional layers with ReLU after each of the first two convolutions [5]. By extending the number of input layers, ME-NC-PDNet processes all echoes jointly inside the CNN. The CNN can learn the shared structure as a prior, adding information compared to single-echo reconstruction. The input to the multi-echo implementation is stacked real-valued k-space data for the different echoes. The model is trained end-to-end with mean absolute error loss. Here, 6 unrolled iterations, 16 convolution filters and 1 buffer per echo are used. Synthetic data is generated from BrainWeb [10] digital phantoms. For each brain phantom, five different sets of qMRI maps are generated following work of [11] and [12]. The k-space data for each echo and weighted MuPa-ZTE images are simulated from the maps using the forward model. The training set exists of 90 sets of k-space data and ground truth weighted images for each echo, from 18 brain phantoms. For the validation set there are 10 similar sets from the remaining 2 brain phantoms.

ME-NC-PDNet trained on the multi-echo data is compared to NC-PDNet trained on each echo separately. Reconstruction results of 1 validation set, for 4-fold and 8-fold undersampling, are shown in figure 2 and 3 respectively. Also residual images are shown here with respect to the target images. Mean structural similarity score (SSIM) and peak signal-to-noise ratio (PSNR) values, averaged over the 10 validation sets, are presented in figure 4.

For both 4-fold and 8-fold undersampling, joint reconstruction outperforms single-echo reconstruction for echo 2-5 when it comes to PSNR and SSIM. SSIM scores are reaching up to 0.955 for 4-fold undersampling and 0.908 for 8-fold, compared to 0.934 and 0.864 respectively, for single-echo. For echo 1, quantitative scores are closer and even tend to be slightly better for single-echo. Visually, the echo 1 residuals look similar. For echo 2-5, residuals are clearly smaller for multi-echo reconstruction. This strongly suggests that the joint ME-NC-PD network utilizes inter-echo complementary information. This is in particular clear for echo 3, where the single-echo reconstruction seems to miss a part of the outer structure. This is not the case for the multi-echo reconstruction due to the exploitation of shared inter-echo information.

In this abstract, a multi-echo extension for NC-PDNet was proposed for 3D non-Cartesian sampled data and used to reconstruct 3D radial undersampled multi-echo MuPa-ZTE data. Results for 4x and 8x undersampling show that jointly processing multiple echoes increases quality compared to single-echo reconstruction due to inter-echo information that can be learned as a prior in the multi-echo case. Future prospects involve multi-coil extension and human data validation.
Bram VAN AUDEKERKE (Antwerpen, The Netherlands) , Daniel RUECKERT , Shishuai WANG , Florian WIESINGER , Juan A. HERNÁNDEZ-TAMAMES , Stefan KLEIN , Dirk H.j. POOT
11:15 - 12:00 #54384 - P421 A locally low-rank regularized reconstruction for a 3D radial sequence with quasi-continuous echo times at 7 T.
P421 A locally low-rank regularized reconstruction for a 3D radial sequence with quasi-continuous echo times at 7 T.

A 3D radial sequence with quasi-continuous echo times (TEs) better captures fat oscillations at 7 T compared to a six-point Dixon sequence [1]. Because of the sequence’s high sampling rate, a much larger contrast space is obtained compared to six-point Cartesian Dixon sequences. This enables regularization along the contrast dimension to leverage the redundant image information at the different TEs. In this work, this is achieved by applying locally low-rank (LLR) regularization [2] along the TE dimension, potentially increasing the signal-to-noise ratio (SNR) of the reconstructed image datasets, while preserving anatomical details.

The acquisition setting of the 3D radial sequence is visualized in figure 1. Six readouts follow each excitation pulse and are slid in time, resulting in multiple spoke-specific TEs. The spokes are grouped into windows. Then, an image is reconstructed for each window. The windows are overlapping by keeping a certain number of spokes from the last window. In [1], the images were reconstructed with density compensation, Hamming filtering of the k-space data, and application of the adjoint non-uniform fast Fourier transform (NUFFT). The here proposed reconstruction is constructed as a minimization problem, which uses locally low rank regularization along the TE-dimension. It can formally be described as: x^*= argmin┬x⁡〖〖||y-FSx||〗_2^2+λ‖T(x)‖_* 〗 (1) Here, y is the measured radial k-space data of the constructed windows, x is the reconstruction target, S is the multiplication with coil sensitivity maps, F is the NUFFT operator, T is the locally low-rank operator. ‖T(x)‖_* is the nuclear norm, that is, the sum of singular values of the spatial-TE matrix. This nuclear norm regularization was accomplished via singular value thresholding (SVT) of each spatial-TE matrix [3]. Figure 2 shows a visualization of the two terms of the cost function. For the evaluation of the proposed reconstruction, a Cartesian six-point Dixon scan with 1×1×5 mm³ voxel-size (1:15 min acquisition time), as well as a 3D radial scan with a total of 120,000 spokes (5:00 min), and a 3D radial scan with a total number of 24,000 spokes (5x accelerated, 1:00 min) were used both 1 mm³ isotropic voxel-size. A fat-water phantom and an in-vivo calf were measured (after informed consent and with approval of the local ethics committee). Comparisons between the Cartesian on-scanner reconstruction, the original adjoint filtered reconstruction (3DRad-Filtered) on the high spoke dataset, and the proposed 3D radial LLR reconstruction (3DRad-LLR) reconstruction on the low spoke dataset were performed. The sliding window size of the high spoke scan was set to 4,000 spokes with an overlap of 3,000. The window size of the accelerated scan was set to 800 spokes with an overlap of 600. This led to a total number of 117 TEs for both settings. The LLR-reconstruction was performed with a block size of 6³ voxels, stride of 2³ voxels with random patch shifting [5] and a lambda of 1e-4. Fat and water images of the center axial slice were obtained using a 2D graph-cut algorithm [6]. Reconstruction of 3DRad-Filtered was 7 min, and 15 h for 3DRad-LLR. The phantom data were evaluated quantitatively by computing and comparing the resulting proton density fat fraction maps (PDFF) of each reconstruction to the theoretical ground truth, while the in-vivo scans were evaluated in a qualitative manner.

Figure 3 shows the phantom images. The image quality is similar for 3DRad-Filtered and the 5-times accelerated 3DRad-LLR datasets. The Cartesian data show pronounced PDFF residuals for the vials with 15 %, 50 %, and 75 % fat fraction. The mean absolute error per area in figure 3b also shows higher values for the Cartesian sequence than for the two 3DRad reconstructions. Figure 4 shows the center axial slice with an effective TE of 4.5 ms, as well as fat and water images and the PDFF. The 3DRad-LLR reconstruction is able to preserve details in TE - and water-image, which are not visible in the 3DRad-Filtered. Moreover, 3DRad-LLR does not feature any major radial artifacts. The 3DRad-LLR fat image loses smaller details. In terms of resolution, the Cartesian Dixon images yield the highest resolution, but its PDFF shows a gradient from bottom to top.

A LLR regularized 3D radial reconstruction with quasi-continuous TEs has been proposed in this work. This iterative reconstruction is able to capture more details in one fifth of the time compared to a filtered adjoint NUFFT reconstruction [1]. The better fat-water separation compared to the six-point Dixon is also preserved. Further analysis of in-vivo results is necessary. A speed up of the LLR reconstruction time would be desirable.

The LLR-regularized reconstruction is able to achieve images with more detail and SNR than the originally proposed image reconstruction for the quasi-continuous 3D radial sequence at a scan time reduction of four minutes.
Julius GLASER (Erlangen, Germany) , Matthias ROHE , Zhengguo TAN , Tobias WILFERTH , Armin Michael NAGEL , Frederik Bernd LAUN , Florian KNOLL
11:15 - 12:00 #54366 - P422 Multiple Sets of ESPIRiT Coil Sensitivity Maps on VarNet-Based SEMAC Reconstruction.
P422 Multiple Sets of ESPIRiT Coil Sensitivity Maps on VarNet-Based SEMAC Reconstruction.

As an efficient technique to reduce metal artifacts, SEMAC[1] shows promising results with acceptable scan time incorporating parallel imaging and compressed sensing[2]. Existing reconstructions are mainly based on conventional algorithms such as GRAPPA[3] and fast iterative soft-thresholding algorithm (FISTA)[2], whereas learning-based reconstruction is expected to achieve better performance. We therefore aim to use the state-of-the-art unrolled variational network (VN)[4] to reconstruct SEMAC data. Previous studies estimate coil sensitivity maps either with sum-of-square (SOS)[2] or Walsh, and in this work, we use multiple sets of ESPIRiT coil sensitivity maps[5] to comprehensively interpret SEMAC data. Multiple-set ESPIRiT coil sensitivity maps are commonly used when motion, chemical shift and aliasing exists because the main object and shifted or ghost components cannot be interpreted by a single SENSE model. In SEMAC scenario, metal-induced field inhomogeneities can lead to through-plane distortion where spins from different slices are excited under the same RF pulse. Despite additional z-phase encoding can resolve the distorted excitation profiles, coil sensitivity estimation is done before positioning the resolved spins back to their original spatial locations, meaning each slice contains signals from other physical slices. This aliasing makes SEMAC reconstruction more beneficial and robust with additional sensitivities. Then VN is adapted to process multiple sets of sensitivities. Our results demonstrate that multiple-set ESPIRiT coil sensitivity maps are of necessity and learning-based reconstruction can further improve the image quality.

SEMAC acquisitions were conducted on a whole-body 3T system (MAGNETOM Cima.X, Siemens Healthineers, Forchheim, Germany) using a spine coil and a T2-weighted turbo spin-echo sequence (TE=10ms, TR=1200ms, FOV=190mm, different number of slices/SEMAC steps with 4mm thickness) on a spine implant (two connected titanium screws) which was embedded in agarose. With conventional Sparse-SEMAC reconstruction, prospective undersampled data are used to evaluate the necessity of the second-set ESPIRiT sensitivities by comparing it with SOS, Walsh and single-set ESPIRiT. The fully-sampled data are retrospectively undersampled along y- and z-phase encoding dimensions using the poisson-disk distribution with different acceleration rates. Central autocalibration region remains fully sampled and is used for 2-set ESPIRiT coil sensitivity estimation. All fully sampled acquisitions are split into training, validation and test sets with a number of 15/2/1. Initial learning rate is set to 0.001 and adjusted by CosineAnnealing learning rate scheduler. The network is optimized using AdamW and early stopping is applied to avoid overfitting. The learning-based reconstructions as shown in Figure 1 are compared with the conventional method reconstruction of Sparse-SEMAC, in which total variation (TV) regularization enforces image sparsity. The results are evaluated with PSNR, SSIM and MSE.

Figure 2 compares Sparse-SEMAC reconstruction with TV regularization using different coil sensitivity maps, where the number indicates the number of coil sensitivity maps sets used. The bottom row represents the absolute difference images. The artifact observed in the reconstruction using only one set suggests that single-set coil sensitivity maps are inaccurate to fully represent signal behavior near metal. In contrast, the second set (ESPIRiT-#2) provides supplementary information to represent the metal-induced error. The discrepancies between different reconstructions mainly occur around the right screw whose features can be better represented using the second set of coil sensitivity maps. Figure 3 shows the reconstruction using zero-filling, soft-SENSE and Varnet methods with two-set coil sensitivity maps. Varnet visibly and quantitatively improves reconstruction quality by better preserving structural details, particularly around the lower screws.

Compared with single-set coil sensitivity maps, multiple-set coil sensitivity maps account for potential errors that may lead to artifacts. This is particularly important for SEMAC where metal introduces through-plane distortion which cannot be fully represented by single-set coil sensitivity maps. Our initial results demonstrate that combining learning-based method with multiple-set ESPIRiT sensitivities has strong potential in improving SEMAC reconstruction quality.

Our work investigates the effects of different coil sensitivity estimations and adapts VarNet to reconstruct the SEMAC data using multiple-set coil sensitivity maps. We maintain the training setup as simple as possible in the current stage, which could be extended and optimized to improve performance in the future. We also observe a potential domain gap between retrospective and prospective undersampling because the acquisition sequence changes the dynamic signal evolution[6].
Haiting HUANG (Erlangen, Germany) , Felix TYRACH , Armin Michael NAGEL , Florian KNOLL
11:15 - 12:00 #54201 - P423 POCS-Inspired GAN-Based Deep Learning Reconstruction for Partial Fourier k-Space Completion in MRI.
P423 POCS-Inspired GAN-Based Deep Learning Reconstruction for Partial Fourier k-Space Completion in MRI.

Partial Fourier (PF) acquisition reduces echo train lengths and MRI scan time by exploiting conjugate symmetry of k-space, acquiring only a fraction of phase-encoding (PE) data [1]. Phase errors from field inhomogeneities and motion compromise this symmetry, requiring robust reconstruction. Classical methods such as Zero-Filling (ZF) and Projection Onto Convex Sets (POCS) suffer from residual artifacts and blurring [2]. Deep learning has shown potential for accelerated MRI reconstruction [3], yet integrating physics-based constraints with learned PF reconstruction remains an active research area. This work proposes a GAN-based model combining iterative POCS-like data consistency with a learned CNN correction step for PF k-space completion in two scenarios: All coils available (yet coil compressed (CC)) and failure in coils (faction of coils signal used, coil trimmed (CT)).

Multi-channel brain data were acquired from 9 volunteers at a 7T MRI-system (MAGNETOM 7T, Siemens Healthineers, Germany) using a fully-sampled gradient-echo-sequence with a repetition time (TR) of TR=33ms, 4 echo times (TE) from TE=3.75ms to19.65ms andan acquisition matrix of 320×240 for 320 slices (resolution 0.7mm isotropic, 32 receiver-channels/coils). Coil channels were reduced to 6 as CC or CT, for the later the number of channels is simply cut after the first 6 channels. A one-sided block mask simulated PF undersampling at 60% along PE with 10% fully-sampled center. The POCS-GAN as illustrated in Figure 1 comprises a generator with iterative reconstruction steps and a CNN discriminator. Each of 12 generator iterations includes: (1) inverse FFT and sensitivity-map-based coil combination, (2) phase projection onto a low-resolution reference, (3) a CNN denoiser operating on two-channel complex image data, (4) FFT to k-space, and (5) a data consistency step reinserting measured signal values. The discriminator provides an adversarial realism signal. Two scenarios were investigated: (i) CC→CC (domain-consistent) and (ii) CT→CC (domain mismatch). The loss is a weighted combination of L1 (reconstruction quality) and adversarial binary-cross-entropy (BCE) term: L_GAN=λ_g L_L1+λ_d L_BCE. Hyperparameters λ_g and λ_d were optimized and the final model was quantitively validated using peak-signal-to-noise-ration (PSNR) and structural-similarity-index-measure (SSIM) on a held-out test subject (1064 slices), with ZF and POCS as reference baselines.

Figure 2 shows the reconstruction result exemplarily for a single representative slice. The CC model (Final_CC) achieved SSIM=0.99±0.01 and PSNR=40±2 dB, substantially outperforming ZF (SSIM=0.91±0.02, PSNR=33±2 dB) and POCS (SSIM=0.87±0.025, PSNR=31±2 dB). Qualitative assessment confirmed reduced PF artifacts while preserving anatomical structures. The CT model (Final_CT) showed no improvement over baselines (SSIM=0.57±0.09, PSNR=16±6 dB vs. ZF: SSIM=0.59±0.08, PSNR=17±3 dB), with prominent banding artifacts. Effects of reduced coil information in the CT-scenario are visible in the difference maps in Figure 3. Training losses converged stably for both models, yet CT validation metrics remained low and highly variable across epochs.

Combining iterative POCS-like data consistency with a learned CNN denoiser in a GAN framework yields robust and with superior image quality compared to conventional approaches like POCS when input and target domains are consistent. The CC model effectively suppresses PF artifacts while maintaining structural fidelity. When additional domain transformation is required (CT scenario), the model cannot reliably compensate for systematic coil-characteristic differences, producing characteristic signal damping artifacts due to missing local coil-sensitivity despite stable training convergence. This highlights that loss convergence alone does not guarantee reconstruction quality, and domain consistency is critical for reliable DL-based PF reconstruction in the presented setting. Controversially, this can be interpreted as a reliability property of the trained model as no realistically appearing image content is generated. Future work could address the domain gap through augmentation strategies or explicit domain adaptation to potentially enable models to mitigate imaging artifacts due to coil problems.

A POCS-inspired GAN with iterative data consistency outperforms conventional ZF and POCS for PF reconstruction in the domain-consistent scenario. The approach demonstrates the benefit of combining physics-based constraints with learned model. However, domain mismatch between input and target remains a limiting factor, requiring further methodological development for robust clinical applicability.
Melissa DAHLE , Jörn HUBER , Klaus EICKEL (Bremerhaven, Germany)
11:15 - 12:00 #54568 - P424 Deep Image Prior with Early Stopping for Magnetic Resonance Fingerprinting Reconstruction.
P424 Deep Image Prior with Early Stopping for Magnetic Resonance Fingerprinting Reconstruction.

Deep Image Prior [1] Magnetic Resonance Fingerprinting [2] (DIP-MRF) enables zero-shot, self-supervised reconstruction of tissue property maps without external training data and has shown strong denoising performance for highly undersampled MRF acquisitions [3]. However, DIP-based methods are sensitive to the number of training iterations: stopping too early may cause underfitting and inaccurate quantitative maps, while prolonged training may lead to overfitting and reintroduction of noise. Consequently, DIP-MRF relies heavily on user prior knowledge, thereby limiting both its practicality for routine use and the reproducibility of the reconstruction. In this study, we propose a user-independent early-stopping criterion for DIP-MRF reconstruction.

DIP-MRF is performed by generating low-rank spatial images xk using a U-Net fed with a fixed random tensor as input. The generated images xk are then transformed into k-space through the forward model. Data consistency is enforced by comparing the synthesized and the measured k-space data. To enable validation-based early stopping, the undersampled MRF k-space is divided into training (95%) and validation (5%) sets [4]. During optimization, training samples are used to compute a mixed l1-l2 training loss which is used to update the network parameters. The remaining 5% of the samples are held out for validation and used to compute a validation loss for monitoring network performance during optimization. Training is stopped when the validation loss fails to improve for 100 consecutive epochs, indicating overfitting onset (fig. 1, step 1). When training is stopped, the subspaces xk corresponding to the lowest validation loss are used to compute T1 and T2 maps by direct matching in SVD space (fig. 1, step 2). The early stopping approach was first evaluated in simulation. MRF signals were derived via the Bloch equations using a FISP-based MRF sequence using the BrainWeb numerical phantom [5] and a spiral k-space trajectory with 48-fold undersampling. Based on these data, T1 and T2 maps were reconstructed using the early-stopping DIP-MRF approach as well as conventional DIP-MRF trained for 25, 75, 250, and 1000 epochs. Validation loss and SSIM from images generated using the early stopping scheme were monitored and compared to assess whether the minimum validation loss coincided with the maximum SSIM. Quantitative accuracy was further evaluated using MRF data acquired in the ISMRM/NIST phantom at 0.55 T (FreeMax, Siemens Healthineers, Germany). The T1 and T2 maps resulting from the DIP reconstruction were compared with reference inversion-recovery and spin-echo measurements. Finally, in vivo liver MRF data acquired at 0.55 T were reconstructed using: 1) direct matching in the compressed SVD subspace, 2) conventional DIP-MRF trained for 1000 epochs, and 3) the proposed early-stopping DIP-MRF framework. The resulting maps were compared qualitatively and quantitatively.

In numerical simulations, conventional DIP-MRF trained for 25 epochs generates blurred maps, indicating underfitting, while 75 epochs improves structural detail and SSIM/PSNR. Longer training led to noise overfitting, and reduced metrics (fig. 2a). The proposed early stopping method automatically selected epoch 73, corresponding to the minimum validation loss, which avoids both underfitting and overfitting. Figure 2b shows the validation loss with the expected U-shaped curve, decreasing during early optimization and increasing after overfitting began. The epoch of minimum validation loss closely matched the epoch of maximum SSIM for both T1 and T2 maps. In the ISMRM/NIST phantom, early-stopping DIP-MRF yields T1 and T2 estimates in close agreement with inversion recovery and spin echo reference values, with relative errors within ±10% (fig. 3). In vivo results indicate that the conventional DIP-MRF maps trained for 1000 epochs appear qualitatively noisier and show a wider spread of values within the ROIs (fig. 4). T1 and T2 values were not significantly different between conventional and early-stopping DIP-MRF reconstructions across five out of six ROIs, based on t-test analysis.

BrainWeb simulations show that minimum validation loss is a reliable criterion for selecting the optimal stopping point. Results on the ISMRM/NIST phantom confirm that the proposed method maintains quantitative accuracy, while in vivo experiments demonstrate that it prevents overfitting, reduces training time, and preserves quantitative accuracy.

The proposed early-stopping DIP-MRF framework provides a user-independent criterion for early stopping the DIP training addressing a well-known practicality limitation of DIP. It reduces computational cost by avoiding long trainings and eliminates subjective user decisions, enabling more reproducible reconstructions. Although demonstrated with spiral MRF acquisitions, the framework is generalizable to other k-space trajectories and may be extended to broader DIP-based MRI reconstruction problems.
Reina AYDE (Ann Arbor, USA) , Tom GRIESLER , Jesse HAMILTON , Nicole SEIBERLICH
11:15 - 12:00 #54651 - P425 Optimization of inter-slice correlation-based noise reduction algorithm in pediatric high-grade glioma MR images: pilot study.
P425 Optimization of inter-slice correlation-based noise reduction algorithm in pediatric high-grade glioma MR images: pilot study.

Magnetic resonance imaging (MRI) is an indispensable modality for the diagnosis and assessment of pediatric high-grade gliomas (HGG), providing complementary anatomical and pathological information through multiple structural sequences [1]. FLAIR sequence is particularly important for visualizing lesions by suppressing cerebrospinal fluid signals; however, FLAIR images tend to show relatively lower signal intensity compared with T1- and T2-weighted images, degrading the visibility of low-contrast tumor structures [2]. Since brain MRI is acquired as volumetric data, denoising should consider inter-slice correlation along the z-axis rather than processing each slice independently [3]. Therefore, this study aimed to optimize the chunk size and smoothing factor of block-matching and 4D filtering (BM4D) for FLAIR images in pediatric HGG MRI.

The pediatric HGG MRI dataset used in this study was openly available through The Cancer Imaging Archive [4]. BM4D is a volumetric extension of the BM3D algorithm that exploits self-similarity across three spatial dimensions through a two-stage collaborative filtering framework, given a noisy 3D volume z = y + n, where y denotes the noise-free signal and n represents additive Gaussian noise [5]. A systematic grid search was performed over chunk size and smoothing factor to identify the optimal parameter combination for volumetric denoising. Chunk size determines the number of axial slices processed as a single volumetric unit; given BM4D's internal block size constraint of 8 slices, chunk sizes ranging from 8 to 16 were evaluated. Smoothing factor corresponds to the filtering strength, globally scaling the threshold applied during hard-thresholding and Wiener filter coefficients, and was evaluated from 1 to 10 in integer steps. SNR and CV were measured to quantitatively evaluate denoising performance, with ROIs delineated on tumor and adjacent normal tissue consistently across all slices and parameter combinations.

The chunk sizes from 8 to 16 and smoothing factors from 1 to 10 were sequentially applied to pediatric HGG FLAIR MR images, yielding 90 parameter combinations. Representative denoised slices are presented in Figure 1. The denoised images demonstrate visually reduced noise with improved tissue homogeneity while preserving anatomical structures and lesion morphology. Figure 1(a) illustrates that blurring of anatomical structures became increasingly apparent at smoothing factor values of 2 and above, while progressive noise reduction was observed with higher smoothing factor values. Figure 1(b) presents denoised images across varying chunk sizes at a fixed smoothing factor of 2, demonstrating that the effect of chunk size on denoising outcome was not visually discernible. SNR showed a consistent upward tendency with increasing smoothing factor at chunk sizes of 8 and 16, whereas the remaining chunk sizes demonstrated either negligible improvement or declining SNR with smoothing factors above 2 (Figure 2(a)). CV showed the most substantial improvement at a smoothing factor of 2 across all chunk sizes, with only marginal further reduction at higher smoothing factor values (Figure 2(b)). Based on combined qualitative and quantitative evaluation, chunk size 8 with a smoothing factor of 2 was proposed as the optimal parameter combination, corresponding to the point of most substantial CV improvement while maintaining meaningful SNR gain without progressive anatomical blurring.

Smoothing factor was identified as the primary determinant of denoising performance, while chunk size had negligible effect at a fixed smoothing factor. The superior SNR observed at chunk sizes 8 and 16 suggests that BM4D's inter-slice correlation along the z-axis operates most effectively when chunk size corresponds to a multiple of 8, reflecting alignment with the algorithm's internal block structure. CV analysis indicated that improvement saturated beyond a smoothing factor of 2, beyond which the incremental benefit diminished rapidly while the risk of over-smoothing outweighed the marginal gain in signal homogeneity. Future work will validate the consistency of these findings using a larger dataset incorporating a greater number of noisy cases and synthetically generated Rician noise, which more accurately reflects MRI noise characteristics.

This study demonstrated the feasibility of optimizing BM4D denoising parameters for pediatric HGG FLAIR MR images through a systematic grid search of chunk size and smoothing factor combinations. Chunk size 8 with a smoothing factor of 2 was proposed as the optimal BM4D parameter setting for pediatric HGG FLAIR MRI, balancing effective noise suppression with preservation of anatomical detail. These findings highlight the importance of parameter optimization when applying inter-slice correlation-based denoising algorithms to clinical volumetric MRI data.
Youngjin LEE , Minji PARK (Incheon, Republic of Korea, Republic of Korea)
11:15 - 12:00 #54347 - P426 Joint quantitative MRI reconstruction and brain age prediction.
P426 Joint quantitative MRI reconstruction and brain age prediction.

Brain age estimation from structural MRI has become a promising biomarker for characterising neurodevelopmental and neurodegenerative processes [1]. Deep learning approaches have rapidly advanced this field, spanning convolutional architectures, graph-based methods [2], and generative latent-space models [3,4]. Notably, several works have explored learning structured latent representations explicitly conditioned on age to enable both prediction and generation [3,4,5]. A complementary line of research has shown that quantitative MRI (qMRI) metrics, including quantitative R1, R2* and Quantitative Susceptibility Mapping (QSM), exhibit region- and tissue-specific ageing patterns that are biologically informative [6]. However, most deep learning brain age models operate directly in the image domain and decouple prediction from the physical MRI acquisition process. Here, we investigate the feasibility of integrating neural-network-based reconstruction and brain age estimation into a unified pipeline as a first step towards improved brain age estimation.

We propose a multi-task framework that jointly models MRI reconstruction and age regression [Fig.1]. In this preliminary study, before training, multi-coil k-space data were synthesized offline by multiplying quantitative R1 maps by coil sensitivity profiles in image space, followed by a Fourier transform. Retrospective undersampling was applied using a Cartesian mask with a proof-of-principle two-fold acceleration and 24 fully-sampled central k-space lines (ACS) to emulate an accelerated acquisition. The undersampled k-space was combined across coils using sensitivity maps and transformed to image domain, serving as input to the U-Net reconstruction backbone [7], whose bottleneck latent representation (512 channels) was passed to a downstream multi-layer perceptron (MLP) regression head consisting of global average pooling (GAP) followed by two fully connected layers (512→256→1, ReLU, dropout 0.1) for brain age estimation [Fig.1]. Experiments were conducted on a subset of the AHEAD dataset [8] (41/17/6 subjects for train/val/test; age range 19–82 years) [Fig. 2]. For each subject, axial slices were selected from a fixed z-range (slices 125–166) covering mid-brain regions. The model was optimised jointly using a combined loss: L_total = 1.2 x L_rec + 0.1 x L_age, where L_rec is a Structural Similarity Index Measure (SSIM) reconstruction loss and L_age is a Mean Absolute Error (MAE) age regression loss computed on normalized ages.

The proposed network achieved a slice-wise mean absolute error (MAE) of 11 years on the test set, which is lower compared to a mean-prediction error of 17 years, indicating that the model captures age-relevant information beyond naive estimation. Training and validation loss curves showed a consistent decrease in both reconstruction and age prediction loss, indicating that the model captures age-relevant information (not reported). Per-slice analysis [Fig. 3] reveals that the prediction error appears lower for central brain slices. Prediction errors were heterogeneous across subjects, with larger errors observed in some young subjects [Fig.4].

While not yet competitive with state-of-the-art brain age models — which typically report MAEs of 3-5 years on T1-weighted data using 3D volumetric architectures and larger datasets [4] — this work serves as a proof-of-concept. Performance may improve with larger training sets, 3D architectures, and physics-informed reconstruction networks. These preliminary results suggest that the reconstruction process may preserve some age-relevant information extractable from quantitative MRI representations. This is consistent with evidence that qMRI parameters such as R1 are markers of microstructural ageing [6], suggesting they may serve as a biophysically grounded input for end-to-end deep learning pipelines. The observed slice-dependent error pattern, with lower errors in central slices, may reflect the higher concentration of age-sensitive structures in mid-brain regions in the ventricles and subcortical regions in mid-brain axial planes. The heterogeneous subject-level errors could reflect dataset imbalance or subject-specific reconstruction artefacts.

This study presents a preliminary demonstration of a unified framework linking quantitative MRI, reconstruction, and brain age estimation. Despite a current high MAE of 11 years, the model shows consistent learning behaviour, supporting the potential of end-to-end approaches that maintain interpretability across the acquisition-to-decision pipeline. Future work will explore improved reconstruction architectures, stronger regression heads, and extended multiparametric inputs including R2 and QSM. This work was funded by the European Union under the MSCA-DN project IQ-BRAIN (No. 101169519).
Federica LUPO (Amsterdam, The Netherlands) , Birte U. FORSTMANN , Oliver J. GURNEY-CHAMPION , Gustav J. STRIJKERS , Matthan W.a. CAAN
11:15 - 12:00 #54528 - P427 Data-efficient synthetic training for unified segmentation of healthy and abnormal brain tissue.
P427 Data-efficient synthetic training for unified segmentation of healthy and abnormal brain tissue.

Anomaly segmentation is a key clinical objective. However, current approaches focus only on lesions while treating healthy tissue as an undifferentiated background class. Our hypothesis is that including detailed healthy-tissue information will significantly improve anomaly detection. Furthermore, modeling the full healthy-tissue anatomy provides anatomical constraints that enhance lesion segmentation and localization. We use the synthetic-training framework because of its unique contrast-agnostic properties [1] and its potential to rely on a small number of subjects [2]. Only a few attempts have explored using synthetic training to jointly segment lesions and healthy tissue [3-5]. Whereas these previous works focused on a specific pathology, (MS or stroke), and attempted to insert real lesion masks into healthy-tissue labels, we propose a broader approach targeting any lesion type and relying exclusively on synthetic shape generation.

We start with a set of 6 subjects with high-quality, densely annotated head-tissue labels, and we introduce 3 types of white-matter (WM) anomalies as follows: 1) CSF-hole anomalies: no additional tissue is added; we locally deform white and gray matter to simulate abnormal geometries. 2) MS-like lesions (1 tissue): We generate between 45 and 120 ellipsoidal shapes (with predefined radius ranges) and insert them randomly within the WM. 3) Tumor-like lesions (1-3 tissues): • Core tissue: generated as a single ellipsoid (diameter range 80-960 mm) • Necrotic tissue: produced by intersecting the core with thresholded 3D Perlin noise. • Edema tissue: generated as an expanded region surrounding the core. We additionally modify the random-contrast generation, to ensure that lesion intensities mean differ by 0.2 with WM. We then apply standard TorchIO augmentations [6] (affine transformations, elastic deformations, bias field and noise) and generate 6000 synthetic contrast samples (1/3 for each type). A 3D Residual Encoder (XL) is trained using the nnU-Net framework [7]

We evaluate the model on three private datasets, with manual lesion masks: a glioma dataset (N=45), with T1 and T2 inputs, a lymphoma dataset (N=116) with T1-weighted clinical acquisitions only, and a MS dataset (N=91) with multiple contrasts (T1, FLAIR). We compare our method, SIAM, with LST-AI [8] on the MS dataset (one prediction with both Flair and T1) and with SynthSegWMH [3] on all datasets, although SynthSeg-WMH was developed for MS lesions only and therefore does not generalize to tumor-like lesions. We obverse comparable performance with LST-AI, which have been trained on real data and which use both contrasts (T1 and Flair) to predict. The drop in dice is expected, since the lesion mask has been drawn on the flair, and only a subpart of the lesions are visible on the T1gd, (only active lesion uptake gadolinum constrast agent).

The results are promising, as we obtain performance comparable to competitive models despite never using real lesion masks. Starting from synthetic shapes to simulate WM lesions avoids dependence on manually segmented datasets, which are usually small and do not cover the full range of spatial locations. The challenge of collecting large annotated datasets is consequently shifted to generating sufficiently variable synthetic lesions. Our first shape-generation strategy represents a first step in this direction. Future work will extend this approach to include stroke-like regions, which have a larger spatial extent.
Ines KHEMIR , Stephen WHITMARSH , Eric BARDINET , Romain VALABREGUE (Paris)
11:15 - 12:00 #54444 - P428 Siberian Brain Multiple Sclerosis Dataset with lesion segmentation.
P428 Siberian Brain Multiple Sclerosis Dataset with lesion segmentation.

Multiple sclerosis (MS) is a chronic inflammatory neurodegenerative disease of the central nervous system (CNS), which is the leading cause of non-traumatic disability in young adults. MRI, which visualizes lesions of demyelination in the brain, is an informative diagnostic method for MS. Recent advances in technology have enabled the use of artificial intelligence (AI) algorithms to identify, segment, and compare MS lesions. Further development of deep learning (DL) or machine learning (ML) approaches and their application in real-world clinical practice will contribute to increased accessibility and improved quality of medical care. Despite the encouraging performance of DL models in MS lesion segmentation and disease progression tracking, their effectiveness is frequently constrained by the scarcity of large, diverse, and publicly available datasets. Open-source initiatives such as MSLesSeg, MS-Baghdad, MS-Shift, and MSSEG-2 have provided valuable contributions to the research community. Purpose: We introduce the Siberian Brain Multiple Sclerosis (SibBMS) dataset to further advance data-driven research in MS, designed to support MS research utilizing structural brain MRI.

The experimental (clinical) part of this work consisted of research and justification of the choice of the methods used for data collection, pre-processing, labeling and curation (annotation protocols, qualification), cohort analysis with a description of the selection criteria, including inclusion and exclusion parameters. All lesion annotations were manually delineated and rigorously reviewed by a three-tier panel of experienced neuroradiologists to ensure clinical relevance and segmentation accuracy.

As a result of this work, a database was created that includes 94 patients with MS with a complete set of key MRI sequences: T2-Flair, T2, T1, T1-C (with contrast enhanced). A database of meta- and clinical information was compiled, including age, gender, diagnosis date, age at onset, disease duration, MS course, and EDSS. This information is necessary for the differential diagnosis of demyelination diseases. An alternative control group was also created, including data from 100 volunteers without neurological impairment. This is necessary for the development of intelligent systems for MS diagnostics.

The resulting dataset and annotations provide a valuable resource for the development and validation of artificial intelligence and computer vision algorithms aimed at the dynamic assessment of radiological and clinical manifestations of MS.

A comprehensive database of MRI images from patients with diverse forms of MS has been established, incorporating extensive patient metadata and clinical information related to disease status. Expert manual segmentation was performed on preprocessed 3D FLAIR images using the 3D Slicer software package (version 5.4.0). Radiologists systematically imported the imaging studies into 3D Slicer, conducted preliminary quality assessments, and optimized image contrast. Initial registration aligned FLAIR images to a reference volume (NMRI225 Flair), followed by subsequent registration of T2-weighted and pre- and post- contrast T1-weighted images relative to the registered FLAIR images. Lesion labeling adhered to the McDonald criteria, categorizing lesions by anatomical location into juxtacortical and subcortical, periventricular, and infratentorial groups. Radiologists manually delineated lesions on each slice using dedicated segmentation tools within 3D Slicer. This multi-step annotation process ensured precise and consistent lesion identification. The resulting dataset and annotations provide a valuable resource for the development and validation of artificial intelligence and computer vision algorithms aimed at the dynamic assessment of radiological and clinical manifestations of MS. These tools have the potential to enhance diagnostic accuracy, monitor disease progression, and support personalized therapeutic strategies. We thank the Russian Science Foundation for supporting this work (№ 23-15-00377-П).
Andrey TULUPOV (Novosibirsk, Russia) , Liubov VASILKIV , Julia STANKEVICH , Bair TUCHINOV
11:15 - 12:00 #54361 - P429 The segmentation multiple sclerosis lesions via Component-Adaptive and Lesion-Level Supervision approach.
P429 The segmentation multiple sclerosis lesions via Component-Adaptive and Lesion-Level Supervision approach.

Multiple sclerosis (MS) is a chronic inflammatory neurodegenerative disorder of the central nervous system (CNS) and represents the foremost cause of non-traumatic disability in young adults. While magnetic resonance imaging (MRI) has become an indispensable paraclinical tool, the automated segmentation of MS lesions—particularly small, clinically significant demyelinating foci—remains challenging due to severe class imbalance. Conventional loss functions (e.g., Dice coefficient, cross-entropy) are disproportionately influenced by background and large lesions, frequently resulting in the omission of small lesions despite acceptable global overlap metrics. Purpose: To evaluate the performance of the Component‑Adaptive and Lesion‑Level Multiple Instance Learning (CATMIL) approach in detecting demyelinating lesions in multiple sclerosis.

We propose a unified objective function, CATMIL, which augments a base segmentation loss with two auxiliary terms: (i) a Component‑Adaptive Tversky (CAT) loss that reweights voxel contributions according to the size of each connected component (lesion instance), thereby ensuring that small lesions contribute equally to optimization irrespective of their volume; and (ii) a Lesion‑Level Multiple Instance Learning (MIL) loss that encourages detection of every lesion component by maximizing the highest predicted probability within each connected component. Both terms are integrated with the standard nnU‑Net loss (Dice + cross‑entropy) and evaluated on the MSLesSeg dataset using a consistent nnU‑Net framework with 5‑fold cross‑validation.

CATMIL improves small‑lesion recall by 7.7 percentage points relative to the baseline DiceCE, and reduces the number of completely missed lesions by nearly half (from 4.95 to 2.57 per case). This enhancement is achieved without increasing false‑positive volume; indeed, CATMIL maintains the lowest FP volume among all compared methods.

This study shows that modifying the training objective is an effective way to control model behavior in sparse lesion segmentation. Rather than increasing architectural complexity, the proposed approach redistributes supervision during optimization, enabling clearer interpretation of its effects. Voxel-wise objectives inherently favor high-volume regions, causing small lesions to have limited influence. The proposed objective addresses this through two terms: a component- adaptive term that balances contributions across lesion structures, and a lesion-level term that enforces lesion detection. Together, these shift learning from purely overlap-driven optimization toward better sensitivity to sparse lesion signals. Results support this design. The method improves small lesion recall and reduces false negatives while maintaining competitive Dice and improving boundary accuracy, indicating balanced performance across metrics. However, increased sensitivity leads to reduced lesion-wise precision, often due to small isolated false positives or fragmented predictions. This reflects a trade-off between detection and delineation, further affected by the lesion-level term, which enforces detection but not full coverage. Lesion detectability also depends on factors such as contrast and boundary clarity. While the proposed objective improves sensitivity, it does not fully overcome limitations in input data. Limitations include evaluation on a single dataset, focus on one disease, and use of a single architecture. In addition, the detection–precision trade-off is not explicitly controlled. Future work should evaluate generalization across datasets and diseases, validate across architectures, and improve control over false positives and boundary consistency. Extending lesion-level supervision to include coverage constraints may further improve segmentation quality. Overall, the results suggest that small lesion segmentation depends on how sparse signals are represented during learning. The proposed objective improves sensitivity to small lesions while maintaining stable global performance, highlighting the role of loss design in imbalanced settings.

The integration of component‑level (CAT) and lesion‑level (MIL) supervision into a unified loss function substantially improves the detection of small, clinically relevant lesions in brain MRI, while preserving global segmentation accuracy and constraining false positives. CATMIL offers a practical and effective solution for highly imbalanced lesion segmentation tasks.
Bair TUCHINOV (Akademgorodok, Russia) , E.n. PAVLOVSKIY , Minh Sao Khue LUU , Yu.a. STANKEVICH , L.m. VASILKIV , A.a. TULUPOV
11:15 - 12:00 #54271 - P430 Effects of deep learning reconstruction on T1-weighted image quality (MRIQC) and brain morphometry (Freesurfer).
P430 Effects of deep learning reconstruction on T1-weighted image quality (MRIQC) and brain morphometry (Freesurfer).

Deep learning (DL)-based reconstruction has proven effective for improving image quality (1-3). The AIR Recon DL (ARDL) method from GE Healthcare reduce Gibbs ringing artifacts and suppress image noise (1), thereby enhancing both signal- and contrast-to-noise ratio (SNR and CNR). Conventional methods for reducing Gibbs ringing, such as applying apodization filters, broaden the point spread function (PSF), thereby increasing the full width half maximum (FWHM) and effectively degrading in-plane spatial resolution. As ARDL removes the need for such filters, the achievable resolution can be preserved or even improved. In a recent MRI system upgrade, ARDL became available for 3D sequences. Before adapting ARDL into our longitudinal research projects, we wanted to assess its effect on the image quality by using MRIQC, a promising tool that assesses image quality metrics such as SNR, CNR, FWHM, and image artifacts directly in human brain images (4,5), and study the effect of these changes on established measures of brain morphometry using FreeSurfer (6).

In March 2024, our 3 Tesla Signa Premier MRI scanner was upgraded from platform RX28 to MR30.1 with ARDL (GE Healthcare, Waukesha, USA) (1). In April-May 2024, 10 healthy volunteers (6 female, mean age 38 [23–64] years) were scanned with a 1 mm isotropic T1-weighted (T1w) MPRAGE sequence based on the ABCD study protocol (7), as part of a larger MRI protocol. The session included a test-retest of T1w MPRAGE, with repositioning between the two scans to assess the within-session reliability. In the retest, after ~22 minutes of other scans, we added two extra T1w MPRAGE with ARDL and maximum denoising at the end of the protocol, one without (T1w MPRAGE DL) and one with (T1w MPRAGE DL_Arc3) increased acceleration from 2 to 3 in the phase direction, decreasing the scan time from 4:49 to 3:43 min. Unexpectedly, ARDL-reconstructed images are automatically interpolated to a 512x512 in-plane matrix, meaning the native acquisition resolution cannot be preserved. In contrast, conventional T1w reconstructions retain the original acquisition matrix. Image quality was first evaluated visually, then quantitatively using MRIQC (v25.1.0) to measure SNR, CNR, and FWHM, as well as the coefficient of joint variation (CJV), sensitive to motion and intensity non-uniformity, and entropy focus criterion (EFC), sensitive to ghosting and motion-induced blurring. FreeSurfer (v7.4.1) was used to measure cortical thickness and the volumes of the hippocampus, amygdala, and thalamus.

From visual inspection of the T1w images without (Fig.1a) and with (Fig.1b, c) ARDL, the noise was noticeably reduced using ARDL. The subtraction images (Fig. 1d, e) clearly show that both noise and Gibbs ringing are removed in the images (Fig.1b and c). MRIQC metrics are displayed in Fig. 2. SNR in WM and GM, and CNR, which measures the tissue separation of GM and WM, are higher for the two scans with ARDL. Both CJV and EFC are higher for conventional reconstruction, indicating more artifacts compared to the ARDL images. FWHM is significantly improved in-plane (y and z) with ARDL, and slightly worse through-plane (x). With additional acceleration, image metrics slightly declined, but are still better than without DL, except for slice resolution. FreeSurfer metrics are shown in Fig. 3, and statistical results are presented in Fig. 4. Paired samples t-tests revealed no significant morphometric differences between the T1w MPRAGE test and retest. In contrast, comparisons between the non-DL and DL-based reconstructions showed significant differences across various regions. Visually, from the segmentation results, there is no obvious difference with and without ARDL.

As expected, ARDL significantly improved SNR and CNR, consistent with its denoising effect. In-plane FWHM improved with ARDL, probably due to no apodization being applied, as opposed to the non-DL reconstructed images with weak apodization applied. Interpolation, used in ARDL, may enhance the perceived resolution by reducing partial voluming (8), though it should not affect the actual FWHM. Some FreeSurfer metrics differed significantly between scans with and without DL reconstruction, suggesting that ARDL alters the T1w MPRAGE image characteristics in ways that can influence segmentation outcomes.

Overall, ARDL improves image quality across most MRIQC metrics, even with reduced scan time, except for the through-plane resolution. Enhanced CNR may improve challenging soft-tissue segmentation, but warrants further validation. Applying ARDL in structural T1w images leads to substantial changes that influence research outcomes in longitudinal studies.
Johnsen SYNNE B , Robin Bb BUGGE , Alnæs DAG , Stener NERLAND , Olsrud ELLEN R , Rise HENNING S , Westlye LARS T , Wibeke NORDHØY (Oslo, Norway)
11:15 - 12:00 #53594 - P431 P.U.L.S.E.: A Python-Based Unified Lung Segmentation Environment for Robust Clinical Deployment.
P431 P.U.L.S.E.: A Python-Based Unified Lung Segmentation Environment for Robust Clinical Deployment.

Pulmonary MRI enables unique, multi-parametric assessment of lung pathophysiology(1). However, routine clinical adoption is hindered by the lack of standardized post-processing tools capable of handling the inherent physical challenges of thoracic imaging(2). Unlike other modalities, MRI signals are qualitative and strictly governed by specific pulse sequences, lacking standardized physical values(3). The lung parenchyma further presents low proton density and field inhomogeneities at air-tissue interfaces, causing rapid signal decay and low signal-to-noise ratios(4) (SNR). These factors result in marked contrast variability across sequences (e.g., FLASH(5), bSSFP(6)) and spatial dimensions, challenging the generalizability of automated segmentation(7). Because accurate region-of-interest (ROI) definition is a prerequisite for quantification, errors introduce significant systematic bias into biomarkers like the ventilation defect percent(8). We developed P.U.L.S.E. (Python-based Unified Lung Segmentation Environment), a standalone ecosystem designed to unify heterogeneous deep learning backbones into a deployment-ready solution. By integrating specialized architectures for distinct MRI contrasts, P.U.L.S.E. bridges the gap between algorithmic development and routine clinical workflows.

Framework Architecture and Dataset Curation: To provide a robust, cross-contrast segmentation solution, the P.U.L.S.E. framework was developed as a unified ecosystem of specialized 2D and 3D deep learning architectures. The framework was trained and tested on four distinct cohorts: 2D uf-bSSFP4 (130 subjects at 0.55T/1.5T), 2D FLASH (12 healthy volunteers at 0.55T/1.5T/3T), 3D bSTAR(9) (30 subjects at 0.55T/1.5T), and 3D UTE(10),(11) (2 healthy volunteers 0.55T) for out-of-distribution testing (Figure 1, Figure 2). Ground truth masks, when available, explicitly included pathologies (e.g., fibrosis, consolidations) to ensure the model recognized lung tissue across a wide range of signal intensities. Deep Learning Architectures: Distinct backbones were optimized for specific SNR characteristics: • 2D uf-bSSFP: A standard 4-level U-Net (Figure 3). • 2D FLASH: A Residual U-Net incorporating residual convolutional blocks and batch normalization to stabilize training against variable signal intensities. • 3D Backbone: A lightweight volumetric U-Net with reduced filter counts to enable real-time inference on consumer-grade hardware. Domain Adaptation & Interactive Retraining: To ensure longevity and adaptivity, a modular interactive retraining suite was implemented. The framework utilizes a layer-wise parameter optimization strategy based on selective fine-tuning. To maintain fundamental anatomical knowledge while learning new contrast features, users can "freeze" specific sections of the network. Typically, encoder layers—which capture high-level geometric features like lung boundaries—are fixed, while only the decoder or bottleneck layers remain trainable. This parameter-efficient approach prevents "catastrophic forgetting" of pulmonary geometry while optimizing for different intensity distributions. Software Framework: The GUI (Figure 4) was built using PyQt5 and distributed as a standalone executable via binary freezing to eliminate external software dependencies. 3D visualization is supported through a rendering backend powered by VTK and PyVista.

Quantitative Performance: The 2D uf-bSSFP model achieved the highest fidelity with a Dice Similarity Coefficient (DSC) of 0.97+-0.01 and a 95th percentile Hausdorff distance (HD95) of (2.45+-0.82) mm. The 2D FLASH and 3D bSTAR models yielded DSCs of 0.95+-0.02 and 0.94+-0.03, respectively. Clinical Integration: P.U.L.S.E. was successfully integrated into the TrueLung(12) functional quantification pipeline, reducing segmentation latency from several seconds to <1 second per subject. Additionally, it supported real-time ROI delineation at the scanner console for automated shimming workflows(13). Modular Retraining: Using selective fine-tuning (freezing encoder layers while retraining the decoder), the system successfully adapted to out-of-distribution signal contrasts using a minimal calibration set (N=5), effectively adapting to the new contrast.

P.U.L.S.E. addresses the technical debt caused by disparate, sequence-specific research scripts by unifying workflows under a common programmatic API and GUI. By reducing the segmentation burden to sub-second inference, it removes a primary bottleneck for downstream tasks. The system's cross-platform stability ensures that segmentation outputs remain bit-wise identical across different operating systems, which is critical for multi-center clinical trials.

This work demonstrates a robust, automated solution for deploying deep learning models in pulmonary MRI. By bridging the gap between advanced algorithmic development and clinical practice, P.U.L.S.E. provides a scalable foundation for future MRI biomarker research.
Pavlos PANOS (Olten, Switzerland) , Alexandra BRAUN , Grzegorz BAUMAN , Oliver BIERI
11:15 - 12:00 #54404 - P432 Synergies of citizen science, artificial intelligence and health: A Systematic Review.
P432 Synergies of citizen science, artificial intelligence and health: A Systematic Review.

Citizen science and artificial intelligence (AI) have each reshaped health research over the past decade[1], [2]. Their integration offers a scalable pathway for generating and analyzing large annotated health datasets[3]. Despite rapid growth in this field, no quantitative synthesis has mapped its geographic and thematic distribution, compared AI methods across health domains, or identified the influence of citizen-generated data on model performance[4]. This systematic review addresses these gaps by synthesizing research on AI-enabled citizen science in health published between 2015 and 2025.

This review was conducted in accordance with the PRISMA 2020 (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidelines[5]. To identify relevant studies, searches were conducted across five major academic databases: Web of Science, Scopus, PubMed, IEEE Xplore, and the ACM Digital Library, using combinations of the keywords: “citizen science”, “crowdsourcing”, “medical imaging”, “artificial intelligence”, “machine learning”, and “healthcare”. Titles and abstracts were screened against eligibility criteria, followed by full-text assessment. Studies were included if they involved both AI applications in healthcare and citizen or crowdsourced participation in data collection, annotation, validation, or analysis. Studies unrelated to healthcare applications or lacking AI components were excluded. Bibliometric and thematic analyses were performed using VOSviewer[6] to generate keyword co-occurrence networks and thematic clusters. Temporal publication trends between 2015 and 2025 were also analyzed, together with geographic distribution patterns across included studies.

Of 277 full-text records assessed, 257 met all inclusion criteria (Figure. 1). Published studies increased from 4 in 2015 to 34 in 2024, representing an 8.5-fold growth with faster growth after 2019 and no evidence of a publication plateau based on polynomial trend analysis (Figure. 2). Research output was geographically concentrated. The USA contributed the largest number of studies, followed by Canada, Spain and Germany, whereas the remaining studies reflected multinational collaboration (Figure. 3). Keyword co-occurrence analysis identified three dominant research clusters: AI and machine learning methods (centralised around artificial intelligence, machine learning, and deep learning); crowdsourcing and labelling workflows (crowdsourcing, labelling, annotation aggregation); and domain-specific health applications linking COVID-19, environmental monitoring, federated learning, and privacy (Figure. 4). Medical imaging was the leading domain, followed by disease surveillance and mental health.

The growth trajectory reflects maturation of AI architectures capable of processing citizen-annotated data and the expanded availability of mobile annotation platforms. Accelerated output after 2019 is partly attributable to the COVID-19 pandemic, which demonstrated the scalability of citizen science for rapid health data mobilisation. Geographic concentration in North America signals an important equity gap: citizen science AI for health is predominantly developed in high-income settings, limiting generalisability to global disease burdens. Keyword network analysis suggests increasing attention to federated learning and privacy-preserving approaches, reflecting growing awareness of governance challenges associated with citizen-generated health data[7]. The dominance of convolutional neural networks (CNNs) aligns with the predominantly visual character of citizen science health annotation tasks [8].

AI-augmented citizen science has expanded rapidly across health research including medical imaging and disease surveillance. However, research activity remains geographically concentrated and methodological heterogeneity persists across domains. Standardized reporting frameworks, domain-specific benchmarks, and broader geographic diversity may support future development of the field.
May MYAT MON (Barcelona, Barcelona, España, Spain) , Ferran PRADOS CARRASCO , Laia SUBIRATS MATÉ
Palau Sira
12:00 LUNCH BREAK

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FT1-5 - The Future of Early Detection (2030)

FT Society
13:30 - 14:00 Screening for Sudden Cardiac Death: The Emerging Role of Cardiac MRI. Bianca DOMÈNECH (Keynote Speaker, Spain)
14:00 - 14:30 Whole-Body MRI Screening in High-Risk Pediatric Oncology. Emili INAREJOS (Keynote Speaker, Spain)
14:30 - 15:00 And What About the Prostate? From PSA to MRI-Based Screening. Roberto GARCIA-FIGUEIRAS (Keynote Speaker, Spain)
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OB3-1 Scientific session
AI and Imaging Innovation

13:30 - 13:42 #54579 - PG039 Improving Clinical Discrimination of Cognitive Decline in Parkinson Disease through Hallucination-Limited MRI Motion Correction.
PG039 Improving Clinical Discrimination of Cognitive Decline in Parkinson Disease through Hallucination-Limited MRI Motion Correction.

Subject motion degrades 7-20% of clinical brain magnetic resonance imaging (MRI), often requiring repeat scans [1]. Retrospective correction shows promise, but most retrospective correction methods rely on simplified motion simulations that neglect acquisition timing and k-space corruption behavior [2–4]. We developed an acquisition-physics-anchored motion simulator and a conditional generative adversarial network (GAN) with a data-consistency constraint to reduce anatomically implausible reconstructions during retrospective correction. After training on simulated cohorts, the framework was externally validated on clinical 3T brain MRI from a Parkinson disease spectrum using image-fidelity metrics and downstream evaluation of Parkinsonian cognitive-stage discrimination.

Training pairs were generated from 537 fastMRI 3T brain T2-weighted volumes by multi-shot 2D turbo spin-echo (TSE) acquisitions (Repetition Time (TR)/ Echo Time (TE) 6000/80 ms, Echo Train Length (ETL) 16, interleaved ordering). Motion was modeled as a six-degree-of-freedom rigid head pose during each echo train. In-plane translations used the Fourier shift theorem, whereas rotations were applied through image-domain bicubic resampling. Through-plane motion was approximated by two effects: (i) slice-dependent apparent in-plane displacement induced by out-of-plane rotation and (ii) signal attenuation approximating slice-profile dephasing and spin-history-related signal loss [5–7]. Five motion-severity classes were simulated (Table 1). Volumes were split at the subject level into training/validation/test sets (375/80/82). A 2.5D conditional GAN (U-Net generator [8], spectral-normalized PatchGAN discriminator [9]) mapped five neighboring slices to a corrected center slice using dominant L1 + SSIM loss [10] with a small adversarial term. An acquisition-aware k-space data-consistency step preserved motion-free acquired phase-encode lines while replacing corrupted lines with network predictions, constraining reconstruction to measured data. Correction was performed on magnitude images. For clinical evaluation, the framework was applied to 45 T2-weighted brain MRI examinations from a Parkinson disease cohort (13 healthy controls [HC], 11 Parkinson disease without dementia [PD], 21 Parkinson disease dementia [PDD]; 3T Philips TSE, TR/TE ~10243/60 ms, ETL 15, matrix 128×128×90). Seven handcrafted intensity and texture features were extracted within the brain mask from raw and corrected images: mean intensity, standard deviation, 25th and 75th intensity percentiles, gradient mean and standard deviation, and Laplacian variance. Between-group differences used Kruskal-Wallis tests with Dunn post hoc comparisons (HC vs PD, HC vs PDD, PD vs PDD; Šidák adjustment).

Across 409 evaluable motion-corrupted test instances (82 held-out volumes, each corrupted under the five severity classes; one excluded), the network outperformed motion-corrupted inputs on all fidelity metrics. SSIM increased from 0.698 to 0.788 (Δ +0.089, Wilcoxon p=4.2×10⁻⁶⁸), peak signal-to-noise ratio (PSNR) from 21.72 to 23.27 dB (Δ +1.55 dB), normalized mean squared error from 0.164 to 0.108, and mean absolute error (MAE) from 0.0496 to 0.0358 (all p<10⁻⁸). SSIM improved in 399 of 409 volumes (97.6%), PSNR in 80.2%, and MAE in 92.4%. Performance gains increased with motion severity, largest in the severe class (ΔSSIM +0.118, ΔPSNR +3.44 dB). The mean predicted-to-clean sharpness ratio was 0.56, ranging from 0.73 (mild) to 0.45 (severe), indicating mild oversmoothing (Table 2). For clinical validation, group separation was primarily driven by intensity dispersion. Intensity standard deviation showed a highly significant three-group Kruskal-Wallis effect on both raw and corrected images (p<0.001), with Dunn post hoc analysis localizing the effect to HC versus PDD in both conditions (p<0.001). Motion correction additionally revealed mean intensity as a discriminator. Mean intensity was non-significant on raw images (p=0.26) but became significant after correction (p=0.029), with the post hoc effect again localized to HC versus PDD (p=0.023) (Table 3).

The acquisition-aware GAN reduced motion artifacts and produced consistent improvements in image fidelity. The data-consistency constraint limited failure modes primarily to mild oversmoothing rather than anatomically implausible reconstructions. Motion correction preserved the robust HC versus PDD separation pattern driven by intensity dispersion, while additionally enabling mean intensity to emerge as a significant discriminator after correction. These findings suggest that physics-informed correction may preserve quantitative integrity and warrants further validation in larger cohorts.

Physics-informed retrospective motion correction improved image fidelity and preserved clinically relevant discriminatory information in Parkinson disease MRI.
Sena AZAMAT (SARIYER, Turkey) , Saritha UNNIKRISHNAN , Esin OZTURK-ISIK
13:42 - 13:54 #54542 - PG040 Added Value of Deep Learning MRI-Derived Baseline Biomarkers For Dynamic Prediction of Disability Progression At The First Multiple Sclerosis Attack.
PG040 Added Value of Deep Learning MRI-Derived Baseline Biomarkers For Dynamic Prediction of Disability Progression At The First Multiple Sclerosis Attack.

Progression independent of relapse activity (PIRA) is the principal driver of long-term disability accumulation in multiple sclerosis (MS) [1–3], and its early prediction represents a major unmet clinical need [4–6]. Established tabular prognostic variables, including age at onset and T2 lesion count, show only modest predictive accuracy for PIRA. Coll et al. [4] recently developed a DL discrete-time survival model using routine baseline brain MRI, T1-weighted and T2-FLAIR sequences acquired at the first demyelinating event, to predict time-to-first-PIRA. The model, based on a fine-tuned EfficientNet-b0 architecture processing the central 40 axial slices per patient, achieved a time-dependent concordance index (ctd) of 0.72, substantially outperforming a classical age- and lesion-adjusted Cox model (C-index: 0.62). Crucially, the DL-derived PIRA risk score provided independent prognostic information beyond age at onset and T2 lesion count when entered jointly in a Cox regression. Whether such MRI-derived DL representations retain independent predictive value over tabular data, and specifically over T2 lesion count as the conventional MRI metric, across long-term longitudinal follow-up has not been evaluated.

A prospectively acquired cohort of 257 MS patients with longitudinal clinical follow-up (median: 7.1 years) and baseline MRI was analysed (Fig. 1). The pretrained DL model of Coll et al. [4] was applied to generate patient-level cumulative PIRA risk scores from baseline T1-weighted and T2-FLAIR images. Three modelling strategies to predict PIRA (as a potentially recurrent event) were compared using L1-penalised Weibull accelerated failure time models fitted at yearly landmarks (i.e., at baseline [t=0] and 10 re-baseline years) after a first MS attack: M1, tabular data only (clinical, demographic, and T2 lesion count); M2, DL-derived MRI risk score alone; M3, combined tabular and MRI-derived score. Discrimination was assessed using Harrell's C-index at each landmark, with a 1/6 holdout evaluation strategy.

58 patients (22%) experienced at least one PIRA event; median time-to-first-PIRA was 4.2 years. M1 showed heterogeneous discrimination across landmarks (C-index range: 0.41–0.68; Fig. 2). M2 demonstrated its strongest performance during early follow-up, with C-indexes of 0.64, 0.64, 0.61, and 0.59 at the first four landmarks — substantially outperforming M1 at those timepoints and confirming that the DL model captures MRI-encoded information beyond what T2 lesion count alone contributes (Fig. 3). However, M2 deteriorated markedly at later landmarks, falling to or below 0.41, indicating that static baseline imaging progressively loses predictive relevance for long-term recurrent progression. M3 improved over M1 at the earliest landmark (0.63 vs. 0.58) and showed modestly more stable discrimination at mid-range landmarks (Fig. 4).

Baseline MRI-derived DL predictions encode prognostically relevant spatial information, possibly from frontoparietal cortex and periventricular white matter [4], that neither tabular variables nor T2 lesion count alone can capture. The early superiority of M2 over M1 directly demonstrates this added MRI value. The temporal decay of M2 performance aligns with the original model's training objective, i.e., prediction of first PIRA event, occurring at (median) 4.2 years, and reflects the intrinsic limitation of static baseline neuroimaging biomarkers when the prediction horizon extends beyond the modelled pathological window. The modest incremental benefit of M3 over M1 at later landmarks suggests partial overlap between DL-derived MRI features and tabular predictors including lesion burden and age at onset, but also underscores the need for temporally updated MRI acquisition within longitudinal frameworks to sustain long-term predictive relevance.

DL-derived biomarkers from routine T1-weighted and T2-FLAIR scans at disease onset encode prognostic information for early PIRA risk that surpasses tabular data, including T2 lesion count, alone. Their contribution diminishes over time, motivating the development of longitudinal, dynamic DL frameworks for sustained MS prognosis.
Francisco José APARICIO SERRANO (Barcelona, Spain) , Ariadna MASOT LLIMA , Agustín PAPPOLLA , Susana OTERO ROMERO , René CARVAJAL , Álvaro COBO CALVO , Manel ALBERICH , Cristina AUGER , Joaquín CASTILLO , Manuel COMABELLA , Ingrid GALÁN , Daniel HERNÁNDEZ , Carlos NOS , Jordi RÍO , Breogán RODRÍGUEZ ACEVEDO , Jaume SASTRE GARRIGA , Ángela VIDAL JORDANA , Àlex ROVIRA , Xavier MONTALBAN , Marco LORENZI , Mar TINTORÉ , Xavier LLADÓ , Deborah PARETO , Carmen TUR
13:54 - 14:06 #54064 - PG041 MRI-DRIVEN SUBTYPES CAPTURE DISTINCT BIOLOGICAL SUBSTRATES AND DISABILITY PROFILES IN MULTIPLE SCLEROSIS.
PG041 MRI-DRIVEN SUBTYPES CAPTURE DISTINCT BIOLOGICAL SUBSTRATES AND DISABILITY PROFILES IN MULTIPLE SCLEROSIS.

Multiple sclerosis (MS) shows marked biological heterogeneity not fully captured by clinical phenotypes [1,2]. Advanced machine learning techniques, such as the Subtype and Stage Inference (SuStaIn) algorithm, enable the identification of MRI-driven MS subtypes with distinct progression trajectories that transcend conventional categories [3,4]. Aims of this study were to identify biologically meaningful MRI-based subtypes of MS and determine their associations with disability, age at onset, cognition, polygenic risk score (PRS) for MS severity, and progression independent of relapse activity (PIRA).

We applied SuStaIn to multimodal 3T MRI data from 1017 MS patients and 548 healthy controls (HC), as shown in Figure 1. Features included T2-hyperintense white matter (WM) lesion volume, mean diffusivity in WM lesions and tracts, and cortical and deep gray matter (DGM) volumes. Cognitive testing (n=501), genetic profiling (n=650), and longitudinal clinical follow-up (n=645; median follow-up=6.57 years) were available in partially overlapping patient subcohorts. An independent validation cohort included 247 MS patients and 141 HC.

SuStaIn identified four MRI-based subtypes: lesion-led (44%), cortex-led (23%), tract-led (23%), and DGM/cerebellar-led (10%), as shown in Figure 2. Cortex-led and DGM/cerebellar-led were enriched in progressive MS (47% and 56%), whereas lesion-led and tract-led were predominantly relapsing-remitting MS (66% and 71%) (p<0.001). Tract-led was overrepresented in pediatric-onset MS (38%) and underrepresented in adult-onset MS (19%); lesion-led predominated in adult-onset MS (48%), and DGM/cerebellar-led was more frequent in late-onset MS (14%) (p<0.001). Disability milestones (Expanded Disability Status Scale [EDSS] score ≥4.0 and ≥6.0) were reached more frequently in cortex-led and DGM/cerebellar-led MS patients (Expanded Disability Status Scale [EDSS] score≥4.0: 45.3% and 55.6%; EDSS score≥6.0: 27.8% and 29.3%) than in lesion-led (34.3% and 20.0%) or tract-led MS patients (31.9% and 18.7%) (p<0.001). PIRA-free survival differed across subtypes (p=0.04); being 1.67 and 1.93 years shorter in in cortex-led and DGM/cerebellar-led, respectively, compared with lesion-led (p<0.001). Cognitive performance and PRS for MS severity did not differ across subtypes (p≥0.513 and p≥0.428, respectively), but within each subtype advancing SuStaIn stage was associated with worse global and domain-specific cognitive scores (all p≤0.030).

MRI-based subtypes identified by the SuStaIn algorithm reveal distinct and clinically meaningful variations in MS, encompassing differences in clinical phenotype, age at disease onset, disability progression, and cognitive function. By integrating complex imaging biomarkers, this data-driven classification transcends traditional clinical categories, providing a more nuanced understanding of the disease’s underlying biology. These subtypes not only reflect divergent pathological mechanisms but also correlate with varied trajectories of disability and cognitive decline. Consequently, this approach holds significant potential to inform personalized therapeutic strategies, enabling treatments to be tailored to the specific subtype and stage of MS progression, ultimately improving patient outcomes.

Multimodal MRI-based SuStaIn identifies reproducible MS subtypes with clinically meaningful differences in phenotype, age at onset, disability, cognition, and progression. This framework may support biologically informed stratification in MS.
Loredana STORELLI (Milan, Italy) , Paolo PREZIOSA , Ferdinando CLARELLI , Elisabetta PAGANI , Nicolò TEDONE , Monica MARGONI , Federica ESPOSITO , Antonio GALLO , Alessandro D’AMBROSIO , Massimo FILIPPI , Mara ROCCA
14:06 - 14:18 #54554 - PG042 ATLAS: Automated tissue and lesions analysis system.
PG042 ATLAS: Automated tissue and lesions analysis system.

The accurate parcellation of the human brain, creating a personalized anatomical map, is the first step after brain MRI acquisition for numerous downstream clinical and research applications. Precise delineation of anatomical structures is essential for various neuroimaging techniques, such as seed-based functional MRI (fMRI) analyses, fiber tractography based on diffusion MRI (dMRI), commonly used in presurgical planning, and targeted deep brain stimulation. Generating such parcellations in the presence of large pathologies poses a significant challenge. Lesions often exert a "mass effect," physically displacing and distorting surrounding healthy tissues [1-3]. Lesions like gliomas can furthermore infiltrate tissue, creating ambiguous boundaries between healthy and pathological regions. Because standard automated parcellation algorithms such as FreeSurfer [4] or FastSurfer [5] rely heavily on expected non-pathological topological priors, they are unequipped to handle these deformations, frequently resulting in misclassified tissue or outright failure. To address this, current state-of-the-art approaches employ sequential pipelines [6,7]: they first segment and fill in or remove the lesion, and subsequently parcellate the remaining tissue. However, these sequential pipelines propagate any inaccuracies from the segmentation stage to the parcellation stage. To overcome this, we propose a novel, end-to-end framework that tackles lesion segmentation and brain parcellation simultaneously. We hypothesize that a shared encoder will learn rich representations of brain topology, enabling lesion and surrounding tissue morphology to inform and improve both lesion segmentation and brain parcellation.

Training an end-to-end model in the absence of paired ground truth data is a challenge. Clinical datasets such as BraTS provide lesion masks but no parcellations, while healthy ones (e.g. HCP) provide parcellations but no lesions. To overcome this, we used a virtual database created by lesion inpainting in healthy parcellated brains (HCP young adults [8]) after warping to match lesioned brains (BraTS 2021 [9]), yielding paired ground truths for both tasks. The label space combines the Desikan-Killiany atlas with 16 subcortical regions, resulting in 84 mutually exclusive parcellation labels plus one lesion label, for a total of 85 classes. The resulting virtual database consists of 1001 paired training images and 24 test images. We evaluated three nnU-Net (v2.5.1) [10] configurations: a 2D sequential pipeline, a 3D sequential pipeline, and a 3D end-to-end model, compared against HD-GLIO [11] followed by FastSurfer as an external baseline. Notably, the sequential models used ground-truth masks for punching out the lesions (oracle punch), representing an upper bound on their parcellation performance. All models were evaluated using Dice score and the 95th percentile Hausdorff distance (HD95), the latter being particularly sensitive to boundary irregularities and midline-jumping artifacts expected in 2D models. To test our hypothesis, paired Wilcoxon signed-rank tests were used to compare sequential and simultaneous models on the same test sets.

The 3D simultaneous model significantly outperforms both the 2D sequential pipeline and FastSurfer on Dice and HD95. The difference between 3D simultaneous and 3D sequential is statistically significant for Dice (p = 0.004) but only marginal for HD95 (p = 0.014). All nnU-Net models significantly outperform FastSurfer on both metrics (all p < 0.001).

The 3D simultaneous model matches or exceeds the sequential pipelines even when the latter use oracle lesion masks, suggesting that joint learning of lesion segmentation and parcellation is viable and advantageous. The substantially higher HD95 for the 2D models is consistent with expected midline-jumping and slice discontinuity artifacts from axial inference, which the 3D architectures mitigate. Further work will investigate training on a unified left-right label map, exploiting the shared morphology of anatomically symmetric regions and improving computational efficiency. Additionally, a 2.5D approach aggregating predictions across multiple slice orientations could offer a middle ground between the computational efficiency of 2D and the spatial consistency of 3D inference. Validation on a larger clinical test set will be necessary to confirm generalizability. The impact of modality availability on parcellation performance also remains to be investigated.

We presented a preliminary evaluation of a simultaneous nnU-Net framework for joint lesion segmentation and brain parcellation. The 3D simultaneous model significantly outperforms FastSurfer and the 2D sequential baseline, and marginally but significantly outperforms the 3D sequential oracle pipeline, without requiring any lesion preprocessing. These results support the feasibility and advantage of end-to-end simultaneous parcellation and lesion segmentation.
Pedro DEVOGELAERE (Leuven, Belgium) , Rodrigo TREVISAN MASSERA , Louise VAN DEN EYNDE , Frederik MAES , Stefan SUNAERT , Ahmed M. RADWAN
14:18 - 14:30 #54416 - PG043 Automated spatiotemporal analysis of swallowing using Real-Time MRI.
PG043 Automated spatiotemporal analysis of swallowing using Real-Time MRI.

Swallowing is a complex and dynamic biomechanical process. Dysphagia is associated with severe complications including aspiration, pneumonia and malnutrition [1]. Real-time MRI (RT-MRI) has emerged as a promising solution for assessing the biomechanics of normal and pathological swallowing [2], [3]. Videofluoroscopy remains the gold standard for diagnosing swallowing disorders [4], however it is limited by its significant radiation exposure and by its poor soft tissue visualization. This lack of contrast hinders the precise assessment of the anatomical structures involved in deglutition. In contrast, RT-MRI avoids radiation exposure and offers superior soft-tissue contrast, enabling precise tracking of moving structures. This dynamic acquisition of the swallowing process allows for a better understanding of its different phases and the associated organ movements [5]. The aim of this study is to present a comprehensive pipeline integrating dedicated data acquisition, image reconstruction, automatic segmentation and detection of swallowing phases, providing the foundation for a detailed biomechanical analysis.

RT-MRI was conducted at 3T (Magnetom PrismaFit, Siemens Healthineers), 11 subjects were scanned, using a 20-channel head-and-neck coil and two 4-channel surface coils positioned around the laryngeal region. A Golden-Angle single-slice radial-FLASH sequence [6] was acquired for 26 sec (10000 spokes, TE/TR = 1.41/2.6 ms, FA = 5°,voxel 1.3x1.3x6 mm3). Upon a voice command, subjects used a tube-connected syringe to dispense a controlled bolus of pineapple juice into their mouths and swallowed it. To monitor the swallowing process, an axial 3D T1 was used to position a sagittal plane targeting the lingual septum and the median plane of the epiglottis. Dynamic acquisitions were reconstructed using temporal variation regularization via the BART toolbox [7], achieving a temporal resolution of 40 fps. As a final post-processing step, denoising was applied using the BM4D algorithm [8]. For segmentation, a nnU-Net was trained with data from 5 healthy volunteers totaling 893 frames [9], labeled semi-automatically using ITK-SNAP [10]. A pre-trained ResNet-50 [11], modified with global average pooling and dropout, classified five states: four active swallowing phases (oral, propulsive, pharyngeal, esophageal) [5] and a resting state. To ensure class balance, a subset of 355 frames from 7 subjects were used. Training involved 80 epochs for added layers, then backbone fine-tuning at a lower learning rate. The biomechanical analysis was conducted in two steps. First, automated classification was applied to extract phase durations, yielding metrics like Oral Transit Time (OTT). Second, relying on the segmentation model, mask centroids were extracted to establish an anatomical reference frame (defined by C2 and C4) and to track the relative trajectory of the hyoid bone.

Evaluated via internal 5-fold cross-validation on a dataset of 893 frames, the segmentation model yielded an overall mean Dice Similarity Coefficient (mDSC) of 88%. As illustrated in Fig. 2, class-wise, Dice scores range from 66% for the hyoid bone to over 83% for the remaining classes. On a test set of 110 images, the classification model reached an accuracy of 90%, the confusion matrix in Fig. 3 demonstrates robust performance across all classes. Biomechanical study enabled tracking of the trajectories of the hyoid bone during swallowing phases and the computation of OTT for different subjects, as illustrated in Fig. 4.

The model successfully handled complex spatiotemporal dynamics, yielding Dice scores above 85% for static structures (vertebrae) and 83% for dynamic organs (epiglottis). The hyoid bone achieved a lower score of 66%. This limitation is jointly caused by the hyoid's small size, its rapid movement profile, and the under-representation of active swallowing frames in the dataset, which together complicate accurate segmentation during displacement. The classification model achieved high performance, with F1-scores exceeding 87% across all classes. To address misclassifications caused by inter-frame similarity, post-processing could be used to enforce temporal and physiological consistency. OTT and hyoid bone trajectories are potential biomarkers for quantifying swallowing disorders, characterized by prolonged phase durations [12] and altered anatomical movement [13]. However inter-subject variability in hyoid bone trajectories and OTT as seen in Fig. 4, likely driven by differences in head posture and bolus volume, highlights the need for a more standardized protocol.

We introduce an end-to-end RT-MRI framework automating segmentation and phase detection for swallowing analysis. Future work aims to optimize models' robustness for reliable biomarker extraction and protocol standardization, enabling in-depth biomechanical investigations into complex kinematics of healthy and pathological subjects.
Hugo LACOMBE (Paris) , Marc LAPERT , Benjamin MARTY , Constantin SLIOUSSARENKO
14:30 - 14:42 #54398 - PG044 Beyond Segmentation: Joint Cine–LGE Cardiac MRI Analysis with LLM-Driven Clinical Workflow Automation.
PG044 Beyond Segmentation: Joint Cine–LGE Cardiac MRI Analysis with LLM-Driven Clinical Workflow Automation.

Cardiovascular diseases remain the leading cause of mortality worldwide, with ischemic heart disease frequently leading to myocardial infarction and heart failure [1]. Cardiac Magnetic Resonance (CMR) imaging is the gold standard for non-invasive cardiac assessment: cine-CMR provides high-temporal-resolution evaluation of cardiac function, while Late Gadolinium Enhancement (LGE) MRI enables visualization of myocardial fibrosis and scarring. Clinical interpretation is standardized using the AHA 17-segment model [2], mapping functional and structural findings to anatomical regions. Yet the clinical workflow extends far beyond segmentation — it demands integrating multi-sequence findings and translating them into structured, guideline-aligned reports. Commercial tools such as cvi42 [3] and CAAS MR [4] partially automate cine-CMR contouring and LGE quantification but operate as isolated modules, leaving cross-modal synthesis and reporting to the clinician. Most deep learning approaches likewise address cine-CMR and LGE independently, producing masks and metrics without structured interpretation. No existing framework closes the loop from multimodal analysis to automated report generation in clinical practice. To address this, we propose an LLM-based framework that jointly analyze cine- and LGE CMR. Our approach automates the entire clinical workflow—from segmentation and 17-segment quantification to structured, evidence-grounded reports that mirror expert cardiologist reasoning.

The presented framework (Fig.1) employs a hierarchical multi-agent architecture with a supervisor agent dynamically routing tasks to modality-specific sub-agents, maintaining a shared memory buffer for coherent cross-modal outputs. Three agents are deployed: (i) a cine-CMR Agent for automated left ventricle (LV), right ventricle (RV), and myocardial (MYO) segmentation at end-diastolic and end-systolic phases, deriving end-diastolic volume (EDV), and end-systolic volume (ESV), stroke volume, ejection fraction, and wall thickness; (ii) an LGE Agent for fibrosis detection and localization with AHA 17-segment, quantifying total and segmental fibrotic burden; and (iii) a hybrid report generation agent using retrieval-augmented generation (RAG) of curated local radiology report database (via mxbai-embed-large embeddings[5]) querying to synthesize evidence-grounded, guideline-aligned reports. Three architectures were benchmarked: Attention U-Net [6], U-Mamba[7], and Swin-U-Mamba[8]. Training used an internal dataset (150 LGE scans, 124 cine-СMR studies, 124 reports)[9] and public datasets ACDC[10] and EMIDEC[11], with a 70/10/20% split. Report quality was assessed via BLEU, ROUGE-L, METEOR, BERTScore, and blinded radiologist review against 10 clinical criteria.

U-Mamba achieved the best segmentation for cine-CMR (median Dice: LV 97.46, RV 94.55, Myo 92.97) and LGE (median Dice: LV 95.66, Myo 86.35, FIB 75.68). For segmental fibrosis detection SwinU-Mamba reached F1 89.88 (precision 90.94, recall 88.85). Relative fibrosis volume error averaged 6%, increasing toward the apex (basal: 3.8–4.5%, mid-cavity: 5.1–5.2%, apical: 8.2–9.1%). Among six LLMs, Qwen3.5 achieved the highest scores (BLEU-1: 0.85, METEOR: 0.83, ROUGE-L: 0.87, BERTScore-F1: 0.97) and matched expert reports on 8/10 criteria in blinded review. An example of segmentation cine and LGE is shown in Fig.2

The presented framework successfully automates the cardiac MRI clinical workflow — from multimodal segmentation to structured report generation (as shown in Fig.3). The superior performance of U-Mamba across both cine-CMR and LGE tasks reflects the strength of Mamba-based architectures in capturing long-range spatial dependencies. Fibrosis detection demonstrated sufficient diagnostic accuracy, which is clinically critical, as failure to detect scarring has direct implications for revascularization and ablation planning. Increasing error toward apical segments reflects the known difficulty of apical scar quantification. Hybrid RAG effectively constrains LLM hallucinations by grounding outputs in curated radiological knowledge, though the limited institutional report corpus remains a primary limitation. The strong performance of Qwen3.5 over larger models such as GPT underscores the value of domain-grounded retrieval in specialized medical reporting. Future work will focus on multicenter validation and expanded left atrial functional assessment.

We presented an LLM-based framework that automates the full cardiac MRI clinical workflow — jointly analyzing cine and LGE MRI, performing AHA 17-segment fibrosis localization, and generating structured, evidence-grounded radiology reports mirroring expert clinical reasoning. The system bridges image analysis and clinical decision support, enabling standardized, and interpretable cardiac diagnosis with reduced inter-observer variability and clinician workload. This study was supported by the Russian Science Foundation (RSF) grant No. 23-75-10045
Walid AL-HAIDRI (Saint Petersburg, Russia) , Anatoliy LEVCHUK , Mukhlis RAZA , Kseniya BELOUSOVA , Maksim LUKIN , Mugahed A. AL-ANTARI , Ekaterina BRUI
14:42 - 14:54 #54351 - PG045 Leveraging large-scale foundation models for the classification of clinically significant prostate cancer on MRI.
PG045 Leveraging large-scale foundation models for the classification of clinically significant prostate cancer on MRI.

Prostate cancer (PCa) is the second most prevalent cancer in men and the fifth leading cause of cancer death worldwide [1]. PCa can be classified as indolent or clinically significant (csPCa; ISUP > 1 / Gleason ≥ 7), but diagnostic protocols often lead to overdiagnosis and overtreatment, particularly of indolent cases [2]. MRI improves detection and malignancy assessment, yet its interpretation is subject to interobserver variability and radiologist experience. Artificial intelligence models offer complementary tools to better identify csPCa [3, 4]. Among them, foundation models (FMs) have emerged as a promising alternative to task-specific networks trained from scratch, leveraging pretraining on large image cohorts to deliver improved performance and generalization in downstream tasks [5]. However, their added value for csPCa classification on MRI and the conditions under which it materializes remain insufficiently characterized. This study aimed to develop deep learning algorithms for csPCa classification, comparing models trained from scratch with pre-trained FMs, with particular focus on cross-dataset generalization and the impact of aligning preprocessing with model pretraining.

Two bi-parametric prostate MRI datasets were collected: 1,433 subjects with 1,541 studies from Hospital Vall d’Hebron (VHIR, Barcelona, Spain) and 1,378 subjects with 1,399 studies from the open-source PI-CAI Challenge. VHIR cases included a T2-weighted (T2W) and a diffusion-weighted imaging (DWI) sequence. PI-CAI cases included a T2W, a high b-value from the DWI and the ADC map. Prostate gland masks for both cohorts and ADC maps for VHIR cohort used in this study were generated using QP-Prostate®. The VHIR cohort was split 80/20 into training and held-out test sets, with a further 80/20 split of the training set for validation. The PI-CAI dataset was reserved as an external test set. All images were registered to the T2W space. The b = 1400 s/mm2 images were derived from the original DWI sequences for VHIR cases, and from the high b-value and the ADC map for PI-CAI cases. N4 bias field correction (N4ITK) was applied to the T2W and Perona-Malik anisotropic filter was applied to the b1400. Additionally, non-local means filtering was implemented on the T2W from VHIR to reduce noise. Every volume was resampled to 1mm3 isotropic voxel, z-score normalised and cropped around the prostate mask. For the models trained from scratch, prostate crops larger than 64 voxels in any dimension were resized to a maximum of 64 and zero-padded to 64x64x64; smaller crops were directly padded. CNNs based on DenseNet and ResNet architectures were then trained from scratch with hyperparameter optimization. In parallel, two FMs were evaluated: UNICORN [6, 7] and 3DINO [8]. Feature embeddings were extracted from every image type, and a multilayer perceptron classifier was trained on the VHIR training set and evaluated on both test sets. Two preprocessing strategies were compared. Strategy 1 (S1) mirrored the pipeline designed for the models trained from scratch; for UNICORN, slices were additionally resized to 256x256. Strategy 2 (S2) added a model-specific intensity normalization step designed to match each FM’s pretraining procedure: for UNICORN, images were clipped to the [2.5, 97.5] percentiles and normalised to [0, 1]; for 3DINO, images were clipped to the [0.05, 99.95] percentiles and normalised to [-1, 1]. All models were trained and evaluated using the T2W alone or in combination with the ADC and/or the b1400 DWI images as input.

Results are presented in Table 1. Combining the T2W with the ADC and/or the b1400 DWI improved performance across all models. Models trained from scratch achieved AUCs up to 0.81 and 0.75 on the VHIR and PI-CAI test sets, respectively, but showed a marked drop in sensitivity on the external PI-CAI evaluation (mean 0.69 to 0.44). FMs yielded a better balance between specificity and sensitivity, and more consistent performance across datasets. When preprocessing was aligned with pretraining (S2), FMs achieved the best overall results, with sensitivities reaching 0.85 (VHIR) and 0.72 (PI-CAI), while maintaining comparable specificities up to 0.68 (VHIR) and 0.79 (PI-CAI), and achieving AUCs of 0.79 and 0.80 on the VHIR and PI-CAI test sets, respectively.

These results highlight the limited generalization of models trained from scratch, which, despite strong internal AUC, exhibited a marked sensitivity drop on external data. In contrast, FMs showed more stable generalization across datasets. Importantly, aligning preprocessing with the pretraining protocol was critical to fully leverage these models, improving sensitivity while preserving specificity.

FMs offer markedly better generalization to external datasets than models trained from scratch, especially when preprocessing is matched to their pretraining protocol. This cross-cohort robustness is essential to facilitate the clinical translation of AI tools for csPCa classification.
Carmen PRIETO-DE-LA-LASTRA (Madrid, Spain) , Andreu ANTOLIN , Anna NOGUÉ , Gemma URBANOS , Jose LOZANO-MONTOYA , Berta MIRO , Olga MENDEZ , Juan MOROTE , Angel ALBERICH-BAYARRI , Ana JIMENEZ-PASTOR
Sala de Cambra

"Saturday 03 October"

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C33
13:30 - 15:00

ET1-2 - Building Together: Phantoms

ET Research
13:30 - 13:50 The Physics Foundation: Tuning Relaxometry and Electrical Properties. Simon GRAF (Speaker, Germany)
13:50 - 14:10 The Workshop: 3D-printing and Modular Design for MRI. Habeeb YUSUFF (PhD Student) (Speaker, Strasbourg, France)
14:10 - 14:30 The Added Realism: Mimicking Tissue Microstructure. Aviv MEZER (Ful profesor) (Speaker, Jerusalem, Israel)
14:30 - 14:50 The Motion: Bringing Phantoms to Life. Roberta FRASS-KRIEGL (Senior Scientist) (Speaker, Vienna, Austria)
Sala Petita

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D33
13:30 - 15:00

OD3-1 Scientific session
MRI in Women's Health: Body & Brain

13:30 - 13:42 #54318 - PG046 Supine vs. prone breast MRI: Apparent Diffusion Coefficient (ADC) comparison.
PG046 Supine vs. prone breast MRI: Apparent Diffusion Coefficient (ADC) comparison.

Diffusion-weighted imaging (DWI) is widely used as a non-contrast component of multiparametric breast MRI, as it enables quantitative assessment of tissue microstructure via the apparent diffusion coefficient (ADC). Although its diagnostic benefit in breast cancer has been demonstrated [1], ADC measurements are sensitive to variations in acquisition and analysis, b-values, fat suppression, timing relative to contrast injection [2], motion and distortion handling, signal-to-noise ratio, and region-of-interest placement, which complicates reproducibility across scanners and sites [3]. Additional variability may arise from differences between prone and supine positioning, through altered gradient performance or field homogeneity. Recent expert recommendations have therefore stressed the need for harmonized DWI protocols and interpretation to support broader clinical adoption [4]. This study examines how consistently lesion ADC values can be obtained when using a wearable breast coil (“BraCoil”, [5]) in supine (and prone) positions compared with a conventional prone breast coil.

This study was approved by the local ethics committee at the Medical University of Vienna. Women aged 18–80 years with BI-RADS 4 or 5 lesions, with image-guided biopsy serving as the reference standard were included after written informed consent. Of 33 initially recruited participants, 14 were excluded because of claustrophobia (n=1), missing reference imaging (n=3), or absence of a lesion on MRI (n=10), resulting in 19 women (mean age 49±17 years, BMI 21.9±2.9 kg/m², bra sizes 75A–100C) and 24 lesions. Histology confirmed 10 invasive ductal carcinomas, 2 invasive lobular carcinomas, 8 fibroadenomas, and 1 tubular adenoma; 3 lesions were not biopsied, and 2 patients had breast implants. Each subject underwent two MRI examinations: a 3 T scan (Prisma Fit, Siemens Healthineers, Erlangen, Germany) using the wearable BraCoil and a separate prone reference scan at either 1.5 T (3 cases) or 3 T (16 cases) with a rigid breast coil. Five reference examinations were performed at external institutions, where exact DWI sequence parameters were not available, but image quality allowed reliable ADC quantification. In the BraCoil setting, 6 women were imaged prone to evaluate motion effects, while 13 were examined in supine position, corresponding to the intended application of the coil. Fig. 1 shows the coils and patient positioning used. The overall protocol comprised T2-weighted, contrast-enhanced (CE) T1-weighted, and DWI sequences; reference scans used a single-shot EPI-based DWI acquisition, whereas BraCoil exams included both single-shot EPI and a multi-shot readout-segmented (RESOLVE, [6]) DWI sequence. In Fig. 2, DWI and T1-weighted MRI data of a patient with 2 lesions is depicted. DWI sequence parameters are listed in Fig. 3. Two radiologists specialized in breast MRI (5 and 12 years of experience) independently measured lesion ADC by placing circular regions of interest (r=2-5 mm) in the most diffusion-restricted part of each lesion, guided by high b-value and CE images while avoiding necrotic, hemorrhagic, or artifact-affected regions. Both readers were blinded to histopathological results. ADC measurements were compared between the rigid reference coil and BraCoil, between readers, and between single-shot and RESOLVE DWI acquired with the BraCoil, using linear regression to assess agreement.

Fig. 4A demonstrates that ADC values derived from BraCoil examinations (supine and prone combined) show a high degree of correspondence with those from the prone reference coil (R²=0.88) over the observed ADC interval (0.55-1.99×10⁻³ mm²/s). As illustrated in Fig. 4B, inter-reader agreement was excellent (R²=0.91). Within BraCoil scans, single-shot EPI and RESOLVE acquisitions produced closely matching ADC values (Fig. 4C) with negligible bias (R²=0.88). Only lesions measuring >5 mm in diameter were consistently visualized on DWI in both the reference and BraCoil datasets.

ADC values and lesion classifications obtained in this cohort fall within ranges reported on benign-malignant differentiation in breast DWI [3]. The results counter the idea that the weight or fit of a wearable coil in supine position alters ADC by compressing the breast, as no significant reduction in lesion ADC compared with prone reference imaging was observed. Nonetheless, the study is constrained by a relatively small sample and by heterogeneous, partly undocumented reference protocols across scanners and institutions. Further work will include larger and more diverse patient populations, additional readers, and MRI platforms. Also, ADC values in fibroglandular tissue could be assessed [7].

Supine breast DWI performed with a wearable coil yields lesion ADC measurements that are highly consistent with those obtained using a standard prone breast coil, supporting its future integration into clinical breast MRI for quantitative diffusion assessment.
Lena NOHAVA (Vienna, Austria) , Paola CLAUSER , Andrea BECK-TÖLLY , Pascal BALTZER , Elmar LAISTLER
13:42 - 13:54 #54342 - PG047 3D Visualizations of Supine Breast MR Images for Facilitating Ultrasound-Guided Biopsy.
PG047 3D Visualizations of Supine Breast MR Images for Facilitating Ultrasound-Guided Biopsy.

Breast MRI is typically performed in prone position. However, all following treatments and examinations, including ultrasound (US)-guided biopsies, are performed in supine position. The translation of the lesion location from prone MR images into the real life scenario of a supine US-guided biopsy can be difficult, especially for smaller lesions [1], resulting in more MR-guided vacuum-assisted biopsies, which are more invasive and expensive [2] than US-guided core needle biopsy. Flexible breast coils, such as the BraCoil developed by our group (Fig.1A+B) [3] enable supine acquisition. The goal of this study is to determine 3D visualizations of supine breast MRI which should be intuitive and help in facilitating US-guided biopsy and, therefore, may reduce the need for MR-guided biopsy in the clinical workflow.

T2-weighted supine breast MRI was acquired from 9 BI-RADS 4/5 patients using the BraCoil on a 3T scanner (Prisma (Fit), Siemens). A 2D turbo spin echo sequence was used: (0.42mm)2-(0.7mm)2 in plane resolution, 1.2-1.8mm slices, TR=12.6-15.9s, TE=172ms, turbo factor=14, TA=158-260s. In 3D slicer [4], 4 visualizations were established as transfer functions with the volume rendering tool, adjusting opacity, gradient opacity and color settings (Fig.2) based on T2-weighted MR images (Fig.1B). For 9 patients all transfer functions were applied, totaling 36 visualizations with manually segmented lesions (Fig.3). A single offset value (“shift”) was manually adjusted to account for different overall signal levels. To quantitatively evaluate the quality, two expert radiologists (12/23y experience in US-guided biopsy) were asked to grade and rank the visualizations independently from each other based on the visibility of anatomically relevant landmarks to perform an US-guided biopsy with scores from one to seven (1=not helpful, 7=very helpful). They also ranked the visualizations from worst (4) to best (1) and gave qualitative feedback. A two-tailed, paired t-test for scores and a Wilcoxon signed-rank test for ranks were performed. All p-values were Bonferroni corrected and p<0.05 was considered significant.

Fig.4 shows the scores for visualizations A-D from both readers with significant differences marked between columns. Both scores and rankings suggest that A and B were clearly preferred by the radiologists. Overall, reader 2 graded higher than reader 1. A was considered best at showing landmarks inside the breast, like parenchyma distribution, vessels and lesion location relative to these landmarks. Also the location of the sternum and the rib cage was mostly clearly visible. B was considered valuable for clearly displaying the outer shape of the breast, while also showing the marked lesion with depth-dependent opacity. In some cases C and D gave a very good impression of the distribution of the parenchyma or the shape of the breast, but for most cases, the underlying transfer function was not robust enough to yield useful results reliably across cases. Additionally, for D, one reader criticized that due to the color scheme and opacity features it “lacked clinical realism”. The following suggestions for further improvement of the visualizations were identified: improved nipple visibility, 3D perception for smaller breasts; the parenchyma distribution and vessel visibility in A; and clearer delineation of the skin in B.

Interpreting the ranks and grades for the readers individually revealed reader disagreement about A or B being most helpful. Therefore a possible strategy could be to provide 2 complementary images for facilitating US-guided biopsy: one in the style of B, focusing on the external appearance of the supine breast with clear indication of the lesion position, and one in the style of A that provides internal structural detail for improved orientation using landmarks like parenchyma/fat distribution and vessels. Currently, the creation of the visualizations requires the manual steps of lesion segmentation and adjustment of an offset value, which will be automated in the future. Ideally, images for biopsy-assistance should be generated automatically on the scanner console and stored alongside the MRI data for optimal clinical workflow. In future work, to further exploit the clinical value of supine breast MRI, visualizations to meet the needs of surgeons for preoperative planning and radiation therapists will be investigated.

Based on the assessment of different visualizations for supine breast MRI data, a promising strategy for facilitating US-guided biopsy with two images showing the outer appearance, and internal structures of the breast was identified. The results from this study will serve as a basis for improvement and implementation of the suggested missing landmarks. With the next iteration of visualizations, more readers will be included and the applicability for US-guided biopsy will be directly assessed.
Laura LINTNER (Vienna, Austria) , Lena NOHAVA , Rončević ALEKSANDAR , Paola CLAUSER , Pascal BALTZER , Elmar LAISTLER
13:54 - 14:06 #54407 - PG048 Voxel-wise uncertainty in breast DCE-MRI pharmacokinetic models using Monte Carlo simulations.
PG048 Voxel-wise uncertainty in breast DCE-MRI pharmacokinetic models using Monte Carlo simulations.

Quantitative pharmacokinetic parameters from dynamic contrast-enhanced(DCE) MRI are used to evaluate treatment response in breast cancer; however, voxel-wise estimates are subject to measurement uncertainty [1,2]. Pharmacokinetic models such as Patlak and Extended Tofts model with fast- (ETM-FXL) and no-exchange (ETM-NXL) limits estimate plasma volume, extracellular volume, and permeability, but their behaviour under noise remains unclear [1,3,4]. This study quantified voxel-wise uncertainty in pharmacokinetic parameters derived from these pharmacokinetic models using Monte Carlo simulations in a breast cancer cohort.

DCE-MRI were acquired from fifteen patients with invasive ductal carcinoma at baseline before neoadjuvant chemotherapy. Voxel-wise pharmacokinetic analysis using Patlak, ETM-FXL and ETM-NXL assumptions was performed, followed by numerical simulations to derive coefficient of variation (CV) maps (Figure 1). The study was approved by the London Research Ethics Committee (Identifier: 17/LO/1777) and registered as a clinical trial (NCT03501394). Experimental Acquisition: DCE-MRI images were acquired on a 3T MRI scanner (Achieva TX, Philips Healthcare,Best,Netherlands), using a 3D T1-weighted spoiled gradient echo (SPGR) sequence, with a repetition time (TR) of 3.8 ms, echo time (TE) of 2.3 ms, flip angle of 12˚, voxel size of 1.0 × 1.0 × 1.5 mm³, and 29 dynamics. Image analysis was conducted using MRIcron (University of South Carolina, USA), with rigid-body motion correction applied. Maps of vp, PS, ve were computed separately for Patlak, ETM-FXL and ETM-NXL analysis using SEPAL[5] algorithm, with model T1[6] of 1.3 s, r₁ relaxivity of 5.9 s⁻¹·mM⁻¹, r₂ relaxivity[7] of 17.5s⁻¹·mM⁻¹ and a population-averaged arterial input function[8]. Numerical Simulation: For each voxel within the tumour ROI, a noise-free enhancement signal was generated using experimentally fitted kinetic parameters (vₚ, PS, vₑ) derived from the ETM-FXL model. The baseline signal was defined as the mean of the first four pre-contrast time points, and signal enhancement was normalised relative to this baseline. Voxel-specific noise levels were estimated from baseline signal fluctuations and used to generate Gaussian-distributed noise, which was added to the noise-free signal to simulate realistic conditions. The resulting signals were refitted using the corresponding pharmacokinetic model to obtain simulated parameters. This process was repeated 1000 times per voxel to derive distributions of fitted parameters, from which mean, standard deviation, and CV were computed. Mean, standard deviation, and CV maps were generated for vp, PS, and ve across all tumour voxels. Identical simulations were performed for ETM-NXL and Patlak using their respective fitted parameters and noise estimates. Statistical Analysis: All statistical analyses were performed in SPSS(Release 29.0, IBM Corp., Armonk, NY, USA). Friedman tests were used to compare voxel-wise CV of vₚ and PS across Patlak, ETM-FXL, and ETM-NXL models, with Wilcoxon signed-rank tests for post-hoc comparisons. The CV of vₑ was compared between ETM-FXL and ETM-NXL using the Wilcoxon signed-rank test. Spearman’s rank correlation analysed associations between CV, experimental SNR, and simulated parameter means. Correlation coefficients were calculated per patient and summarised as median and interquartile range(IQR). A p-value <0.05 was considered statistically significant.

All statistical findings are summarised in Table 1. CV differed between models for vₚ and PS (both p<0.001). For vₚ, Patlak had lower CV (0.0008[0.0005–0.0011]) than ETM-FXL(p<0.001) and ETM-NXL(p=0.0012), with no difference between ETM-FXL and ETM-NXL(p=0.303). For PS, ETM-NXL had higher CV (0.0030[0.0026–0.0052]) than ETM-FXL (0.0015[0.0014–0.0024]; p<0.001) and Patlak (0.0013[0.0012–0.0020]; p=0.0017), with no difference between Patlak and ETM-FXL(p=0.303). For vₑ, CV was higher in ETM-NXL (0.0038[0.0024–0.0096]) than ETM-FXL (0.0018[0.0015–0.0029]; p<0.001). There was a significant negative correlation between voxel-wise CV and experimental SNR for vₚ, PS, and vₑ across models (Figure 2), with median Spearman correlation coefficients across patients ranging from −0.34 to −0.54 (all p<0.05). There was also a significant negative correlation between CV and parameter magnitude for vₚ and PS across models (Figure 3; all p<0.05), with no significant association observed for vₑ.

This study shows that voxel-wise pharmacokinetic variability in DCE-MRI differs between models. Patlak had lower variability, while ETM-NXL had higher CV, particularly for PS and vₑ. CV was negatively correlated with SNR, indicating that lower signal quality increases parameter variability. These results suggest that both model choice and SNR influence the reliability of voxel-wise pharmacokinetic estimates.

Maps of variability from Monte Carlo simulations showed differences in parameter stability; Patlak and ETM-FXL had lower variability than ETM-NXL.
Rachaita PODDER (Newcastle Upon Tyne, United Kingdom) , Sai Man CHEUNG , Kangwa NKONDE , Andrew BLAMIRE , Jiabao HE
14:06 - 14:18 #54344 - PG049 TWIx Maps: Transparent Washout Index mapping for DCE breast MRI.
PG049 TWIx Maps: Transparent Washout Index mapping for DCE breast MRI.

Contrast enhancement kinetics play an important role in clinical decision rules such as the Kaiser Score[1-3]. Voxel-level kinetic parametric maps can be utilised to visualise lesion enhancement behaviour by classifying into the BI-RADS[4] kinetic curve types washout/plateau/persistent. Existing approaches are limited to 3 discrete colors and often restricted to user-defined ROIs[3]. This may limit insight into lesion heterogeneity and is user-dependent. We propose a method providing improved depiction of lesion enhancement patterns over the whole breast volume in an ROI-free approach combining continuous color encoding of the kinetic curve type and uptake-weighted transparency.

Dynamic contrast enhanced (DCE) T1w image series from two patients with BI-RADS 4/5 were acquired in supine position with a wearable breast coil (BraCoil[5]) and in prone position with a standard prone breast coil (Sentinelle) at 3 T (Prisma Fit, Siemens). DCE protocol parameters were (prone/supine): 0.1 mmol/kg Gd-based contrast agent, DIXON/SPAIR fat suppression, 0.86/0.75-1.10 mm2 in-plane resolution, 2.0/1-1.2 mm slice thickness, 65/34-66 s per dynamic phase, and 4/5-7 post-contrast timepoints. Data was converted to our new open standard “BrIDS” (Breast Imaging Data Structure), a BIDS (Brain Imaging Data Structure)[6] - compliant way of storing and labeling breast data. Processing was done in Python v3.12 and results were displayed using napari[7]. The relative signal enhancement (RSE) across the DCE T1w MRI series (native vs. post-contrast phases) was calculated per voxel. The washout index (WI) was derived as the change in RSE between the early peak and the last phase. The early peak value was determined as the maximum RSE within the first 2 minutes after contrast agent injection[8]. To visualise WI, a continuous “traffic light” color scheme ranging from green (WI=40%) to yellow (0%) to red (-40%) was used. To suppress background tissue without manual lesion segmentation, we propose to display voxels with high total contrast agent uptake more opaquely while non-enhancing voxels would become transparent. We achieve this by voxel-wise calculation of the area under the RSE curve (AUC) within the first 2 min after contrast injection and normalising by the maximum AUC found over the whole volume, which then defines transparency. By displaying a maximum intensity projection (MIP) of the transparency value volume directly, images similar to classical subtraction MIPs can be created. Since the calculation relies on voxel-wise relative signal changes, it inherently incorporates a signal inhomogeneity correction, which might be particularly useful for BraCoil images with high superficial SNR.

The proposed approach enabled WI visualisations in both benign and malignant lesions for supine and prone breast MRI (Fig. 1). The use of continuous color encoding enabled depiction of intra-lesion variations in kinetic behaviour, as highlighted by the zoomed section in Fig. 2. Transparency weighting emphasised enhancing lesions and efficiently attenuated background (non-enhancing) tissue, while vasculature and the heart remained visible alongside the lesions. Fig. 3 shows a comparison of the transparency-based alternatives to subtraction MIPs. For BraCoil data, the MIPs show higher lesion conspicuity and more detailed depiction of vessels. For prone data, no evident improvement was found.

TWIx maps can be displayed either on black background alongside T1w and T2w as well as DWI, or overlaid on any image, providing complementary context for lesion assessment. Due to the supine acquisition, the imaging protocol with the BraCoil was optimized for high resolution in the coronal plane. Here, however, images are displayed axially to provide the customary view of breast MRI data, resulting in lower resolution than in the coronal view. In this early implementation, TWIx maps are sensitive to motion across the DCE series, as both the RSE- and AUC-based components depend on temporal consistency, which will be addressed by realignment. By utilising AUC as the transparency weighting factor, regions with strong and consistent enhancement become highlighted, which aligns with the expected behaviour of higher vascularised lesion tissue due to neoangiogenesis. Continuous color coding provides a richer kinetics representation compared to discretised classification approaches, and may benefit e.g. visual distinction between plateau and persistent in ambiguous cases. Transparency-based MIPs might be an interesting alternative for subtraction-based MIPs, following radiological evaluation.

The combination of continuous color mapping of the washout index and uptake-dependent transparency enables fully automatic visualisation of breast lesion enhancement while keeping internal heterogeneity visible. Non-enhancing background is efficiently suppressed without the need for manual lesion segmentation. TWIx mapping might serve as a basis for lesion segmentation and radiomics-based analysis.
Aleksandar RONČEVIĆ (Vienna, Austria) , Lena NOHAVA , Laura LINTNER , Paola CLAUSER , Pascal BALTZER , Elmar LAISTLER
14:18 - 14:30 #54574 - PG050 Validation of an in-house Syed-Neblett library model to enable interstitial MRI-only gynecological brachytherapy at 3T.
PG050 Validation of an in-house Syed-Neblett library model to enable interstitial MRI-only gynecological brachytherapy at 3T.

Many centers are transitioning from CT-MRI workflows to MRI-only planning for gynecological brachytherapy. However, MRI-only reconstruction of the Syed-Neblett interstitial applicator is limited by poor visualization of the needles within the central cylinder. These needles cannot be differentiated from the surrounding cylinder as both items appear as void in MRI images. This study evaluates an in-house central cylinder model to enable accurate needle reconstruction in an MRI-only workflow.

An in-house model of the Syed-Neblett central cylinder was created using a CT image of the applicator in a gel phantom; CT markers were used to delineate the needle positions in the central cylinder. A patient was implanted with a Syed Neblett applicator. A CT image (with markers) and T1-weighted MRIs were acquired. Independent catheter delineations were completed for each image in the Oncentra treatment planning system; the in-house model for the central cylinder was used for the MRI reconstructions. A range of central cylinder loadings (30-80%) and central needle loadings (10-70%) were simulated for each independent reconstruction. A dose map was calculated for each case on each image reconstruction. A gamma analysis (3% dose difference/2 mm distance-to-agreement) was conducted using Medical Image Merge (version 7.2.8) comparing MRI- and CT-based reconstructions, with the CT dose map serving as ground truth. Dose-Volume Histograms (DVH) metrics were also evaluated to assess dose differences between CT- and MRI-based reconstruction for various organs-at-risk (OAR) and the Gross Tumour Volume (GTV), High-Risk Clinical Tumour Volume (HR CTV), and Intermediate-Risk Clinical Tumour Volume (IR CTV).

Gamma analysis (3%/2 mm) demonstrated progressive improvement in agreement with increasing central needle loading. Pass rates increased from 97.16% at 10% central needle loading to 99.14% at 70% loading, with consistent increases observed at each increment in central needle loading. Cases in which the central cylinder accounted for less than 80% of the total dwell time (i.e. peripheral needles accounted for more than 20%) resulted in failing gamma pass rates. These loading configurations fall outside the American Brachytherapy Society (ABS) recommendation that peripheral needles contribute no more than 20% of the total dwell time [1]. The DVH results supported gamma findings. No significant OAR differences were observed between CT and MRI plans. The treatment volumes displayed some difference, with an average percent volume within ±10% prescription of 95.6%, 95.9%, and 97.5% for GTV, HR CTV, and IR CTV, respectively.

T1-weighted MRI and CT dose agreement improved with increasing central needle loading, suggesting reconstruction uncertainty becomes more dosimetrically significant when dose contribution shifts toward peripheral needles that are more susceptible to MRI-related geometric distortion and reconstruction uncertainty. High gamma pass rates across all loading configurations that meet the ABS standard demonstrate that the in-house central cylinder model provides robust geometric guidance for MRI-only reconstruction of the Syed-Neblett applicator. All evaluated loading configurations exceeded the AAPM-recommended 90% gamma pass rate criterion for 3%/2 mm analysis, supporting the overall dosimetric agreement between MRI- and CT-based reconstructions [2]. However, interpretation of gamma performance in brachytherapy remains limited by the high-dose-gradient environment, where small spatial offsets introduced through reconstruction uncertainty or image registration can disproportionately reduce pass rates. DVH analysis supported the gamma findings, with minimal differences observed for OAR dose metrics and generally consistent target coverage between plans. Because MRI- and CT-based reconstructions cannot be acquired in identical geometric conditions, some components of the observed discrepancy likely reflect multimodality registration uncertainty rather than true reconstruction error. Additionally, rigid fusion introduces sensitivity to small spatial offsets in high-dose-gradient regions, inherently penalizing gamma performance.

Implementation of an in-house Syed-Neblett library model enables feasible MRI-only reconstruction of catheters traversing the central cylinder. MRI- and CT-based dose distributions demonstrated improved agreement with increasing central needle loading, despite the influence of fusion-dependent spatial offsets and registration uncertainty. DVH analysis further demonstrated consistent dose metrics between reconstruction methods, with minimal differences observed for OARs and acceptable agreement maintained within treatment volumes. Overall, the proposed model has the potential to support clinically acceptable MRI-only planning while highlighting the impact of loading configuration and registration methodology on CT-based validation metrics for gynecological brachytherapy planning.
Mackenzie BRANCH WHITEHEAD (Calgary, AB, Canada) , Shima Y. TARI , Tyler MEYER , Clara FALLONE
14:30 - 14:42 #54694 - PG051 Decoding the female brain: Investigating cerebral white matter changes throughout the menopausal transition, using diffusion MRI.
PG051 Decoding the female brain: Investigating cerebral white matter changes throughout the menopausal transition, using diffusion MRI.

Despite increasing interest in the female brain, menopause transition and its associated brain changes remain poorly understood. However, preliminary evidence has shown changes in cerebral metabolism, structure, function and perfusion.1 Additionally, female sex has been proposed as a major risk factor for Alzheimer’s Disease (AD),2 with menopause transition presenting a critical period, putting the brain at risk for developing AD later in life.3 During this transition, glucose metabolism becomes less efficient, shifting the brain into a hypometabolic state. Recently, animal studies have suggested a shift to ketone bodies as alternative energy source. Moreover, a mechanism for the use of white matter-derived ketone bodies during menpause transition has been put forward.4 This study therefore aims to get more insight into menopause related changes in cerebral white matter, assessing different measures of white matter macro- and microstructure, using Diffusion Weighted MRI (DW-MRI).

MRI data were acquired in 66 women classified as premenopausal (PRE, n = 30), perimenopausal (PERI, n = 14), and postmenopausal (POST, n = 22) as part of the Reward and Sexual Health in Pre-, Peri-, and Postmenopausal Women project at the University Hospital for Psychiatry and Psychotherapy in Tübingen, Germany. Imaging was performed on a Siemens Magnetom 3T XR scanner with a 32-channel head coil. The MRI protocol included scout scans, a high-resolution T1-weighted MPRAGE sequence (TR/TE = 2400.0/2.22 ms, voxel size = 0.80 × 0.80 × 0.80 mm³), and high-angular-resolution diffusion-weighted imaging (HARDI) with 103 diffusion directions (b = 2500 s/mm²). A reverse phase-encoding scan was acquired for EPI distortion correction. Diffusion data were preprocessed using QSIprep. Next, fractional anisotropy (FA) maps were derived and group-comparisons between pre-, peri-, and postmenopausal women were performed using tract-based spatial statistics (TBSS) with threshold-free cluster enhancement (TFCE) for multiple comparisons correction. Additionally, fiber density (FD), log-transformed fiber cross-section (log (FC)), and the combined measure, fiber density and cross-section (FDC) were assessed within a fixel-based analysis (FBA) framework using connectivity-based fixel enhancement (CFE) for statistical inference.

Whole-brain fixel-wise comparison across the three groups revealed significantly different log (FC) in fixels located in the genu of the Corpus Callosum (CC), after correcting for age and TIV. Post-hoc analysis showed a significant increase of log (FC) in the CC of the PERI group specifically, when compared to the PRE group, with fixels oriented left to right in the horizontal plane. No significant differences in log (FC) were found between the PRE and POST group or between the PERI and POST group. Additionally, no significant differences were found in FD or FDC for any of the groups. Voxelwise analysis of FA using tract-based spatial statistics (TBSS) revealed no significant differences in fractional anisotropy across the three groups.

In perimenopausal women, increased fiber cross-section was found in the genu of the CC when comparing to premenopausal women, highlighting the effect of menopause transition on cerebral white matter. The genu of the CC is known to be a late-myelinated region, especially vulnerable to neurodegeneration. Additionally, menopause transition is associated with cerebral hypometabolism and increased amyloid-beta deposition. The increase in log (FC) is therefore hypothesized to reflect an expansion of the white matter compartment due to a loss of myelin integrity. As no changes in FA were found, these findings also emphasize the differences between FBA and DTI, as results found using a fixel-based approach could not be replicated using FA, a tensor-based metric. Limitations include the cross-sectional study design and unequal sample sizes, with the peri-group having a smaller sample size, compared to the pre- and post-group.

Menopause is associated with measurable changes in white matter micro- and macrostructure, as was shown by performing a FBA between pre-, peri- and postmenopausal women. These findings may help clarify the relationship between menopause, cognitive symptoms, and women’s increased risk of Alzheimer’s Disease (AD). However, further research is needed to investigate how myelin content changes across menopausal transition and to identify the biological mechanisms driving these alterations. In addition, longitudinal within-subject studies will be essential for mapping the trajectory of menopause-related brain changes over time. A better understanding of these processes may eventually lead to improved symptom management and may potentially inform measures for AD prevention.
Kato HERREGODS (Ghent, Belgium) , Patricia CLEMENT , Soetkin BEUN , Ann-Christin KIMMIG , Franziska WEINMAR , Birgit DERNTL
14:42 - 14:54 #54682 - PG052 How does the menstrual cycle reshape women’s brains? Impact of hormonal changes on white matter microstructure with free water elimination.
PG052 How does the menstrual cycle reshape women’s brains? Impact of hormonal changes on white matter microstructure with free water elimination.

The menstrual cycle is associated with fluctuations in the pituitary and ovarian hormones: estradiol (E2), progesterone (P4), Luteinizing Hormone (LH), and Follicle-Stimulating Hormone (FSH) [1]. While the effects of these fluctuations on brain structure have been previously investigated, most studies have focused on macrostructural changes in grey matter volume and cortical thickness [2], while their impact on white matter (WM) microstructure remains understudied. Importantly, given previously reported fluctuations in cerebrospinal fluid (CSF) volume [3], it becomes relevant to correct for free water (FW) when studying brain microstructure using diffusion MRI [4], as the former might overshadow subtle cycle-driven tissue changes. This study investigates whether cycle phase and hormonal variation affect diffusion MRI microstructural metrics and if FW elimination (FWE) uncovers additional effects.

In the public dataset Hormone Health Study [5], 22 healthy naturally cycling women underwent multi-shell Linear and Spherical Tensor Encoded Diffusion-Weighted MRI at three cycle phases: menstrual (M), ovulatory (O), and luteal (L). Seven microstructural metrics were extracted using the MD_MRI toolbox [4]: linear kurtosis (Klin), isotropic kurtosis (Kiso), and microscopic fractional anisotropy (uFA), each computed with and without FWE, plus tissue signal fraction (tisFrac). Regional analyses used the JHU ICBM WM tract atlas [6] (27 bilateral WM tracts) and selected Desikan-Killiany parcellations [7] (8 bilateral subcortical regions). Linear mixed-effects models estimated phase contrasts and hormone associations (E2, P4, LH, FSH) per region and metric, with subject as a random effect and age as a covariate, and False Discovery Rate (FDR) applied across regions per metric and atlas.

Across both atlases, 37 significant associations were found, two surviving FDR (Fig. 1 and 2). FSH showed negative Kiso associations in the Corticospinal and Pontine Crossing Tracts that did not survive FWE, pointing to FW contamination. Conversely, positive FSH–uFA connection in the Superior Cerebellar Peduncle, Superior Corona Radiata, and Superior Fronto-Occipital Fasciculus persisted with and without FWE, suggesting effects robust to FW. P4 showed similar robustness with Klin in the Tapetum and uFA in the Brainstem, the latter yielding the only FDR-surviving endocrine result: a negative P4–tisFrac association. For phase contrasts, the Superior Fronto-Occipital Fasciculus showed lower Kiso_FWE at OvsL, the only phase result surviving FDR. The Superior Cerebellar Peduncle had higher Kiso_FWE and Klin_FWE in LvsM. The Posterior Corona Radiata showed opposing Kiso-FWE (negative) and uFA-FWE (positive) at OvsM, reflecting region-specific dynamics. tisFrac was lower in the Brainstem at LvsM and higher in the Hippocampus at OvsL. uFA was higher in the Caudate and Pallidum at OvsM and remained after FWE. The Superior Cerebellar Peduncle was sensitive to phase and hormones, with positive P4 and FSH associations alongside higher luteal-phase diffusion values.

The FDR-corrected negative P4-tisFrac association in the brainstem, replicated across uFA metrics, may reflect decreased axonal density or increased tissue extracellular water with rising P4. The brainstem's high density of progesterone receptors and central role in autonomic regulation make it a biologically plausible target. While structural MRI studies have reported cycle-dependent hippocampal volume changes mainly linked with E2 at O [8], the present diffusion analysis found phase-dependent tisFrac changes in the hippocampus without an E2 association, suggesting these modalities capture distinct aspects of hormonal brain remodeling. Compared to Rizor et al. (2024) [9], who reported negative mean isotropic diffusivity (Diso) associations with FSH in 17 JHU-equivalent tracts, this analysis found negative Kiso associations in the Corticospinal and Pontine Crossing Tracts. These effects disappeared after FWE, suggesting FW-driven variance rather than changes in tissue microstructure. Notably, Rizor et al. reported a directionally consistent but non-significant variation in the Superior Fasciculus that reached FDR-corrected significance only after FWE, suggesting that it may recover masked tissue-specific effects. Regarding P4, directional consistency was observed in the Tapetum and Superior Cerebellar Peduncle, for which Rizor et al. reported positive Diso association.

Menstrual cycle phase and hormones are associated with microstructural changes in WM tracts and subcortical regions measured using diffusion MRI. FWE impacted the results, likely attenuating spurious associations while revealing tissue-specific signals, supporting its use in studies of subtle, hormonally-driven brain changes. These results are exploratory, given the small sample size, but provide mechanistic specificity beyond composite diffusion metrics and motivate larger, prospective studies of cycle-dependent WM plasticity.
Rita REIS NUNES (Lisbon, Portugal) , Ana Raquel NEVES , Patrícia FIGUEIREDO , Rita G. NUNES
Sala d’Assaig
15:00 TIME FOR A BREAK - Coffee and refreshments will be available at the cash bar.
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"Saturday 03 October"

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A34
15:30 - 16:30

OA3-2 Scientific session
Diagnosis, Prognosis and Monitoring in Neurology

15:30 - 15:42 #54263 - PG053 Divergent insular and sensory cortex volumetric profiles in SYNGAP1, GRIN gene family, and STXBP1 encephalopathies.
PG053 Divergent insular and sensory cortex volumetric profiles in SYNGAP1, GRIN gene family, and STXBP1 encephalopathies.

Synaptic dysfunction is a hallmark of many neurodevelopmental, neurodegenerative, and psychiatric disorders, reflecting disruptions in neuronal communication and network integrity. Among these, mutations in glutamatergic synaptic genes such as the GRIN family, STXBP1, and SYNGAP1 play a central role in rare neurodevelopmental encephalopathies. These genes encode proteins with distinct roles in glutamatergic synaptic function: SYNGAP1 loss-of-function causes disinhibition of postsynaptic Ras-MAPK signaling [1], GRIN loss-of-function variants impair NMDA receptor function [2], and STXBP1 loss-of-function disrupts presynaptic vesicle release [3]. Despite shared neurodevelopmental features including intellectual disability, epilepsy, and sensory processing difficulties, evidence suggests their distinct molecular mechanisms may lead to different effects on synaptic maturation and cortical development. Here, we expand a preliminary cohort and perform an MRI volumetric study of cortical and subcortical structures to assess whether genetic background is associated with distinct regional brain volume profiles.

This retrospective study includes 60 structural 3T MRI scans from patients diagnosed with SYNGAP1 (N=28, mean age 5.25), GRIN-LoF related disorders (N=22, mean age 7.5; GRIN1, GRIN2A, GRIN2B), or STXBP1 (N=10, mean age 9.3) encephalopathies. All carried confirmed pathogenic or likely pathogenic variants with documented functional effect. Age-matched normative templates were drawn from the Neurodevelopmental MRI Database [4]. Volumetry across parcellations was performed using CAT12 with the Neuromorphometrics atlas and SUIT cerebellar atlas, following ANTs-based template construction using ABCD Study healthy controls [5] and elastic registration to individual subject space. Volumes were normalized to total intracranial volume (TIV). Group differences were assessed using Type II ANCOVA (covariates: age, sex, gene group). An exploratory secondary analysis grouped patients by functional synaptic state (hyperglutamatergic: SYNGAP1 vs. hypoglutamatergic: GRIN+STXBP1). Multiple comparisons were corrected using Benjamini–Hochberg FDR (adjusted p<0.05). Effect sizes were reported as η².

Gene-specific ANCOVA revealed significant volumetric heterogeneity across multiple regions (η²=0.07–0.28, p-value<0.05). STXBP1 and GRIN patients showed a consistent pattern of increased volume relative to both SYNGAP1 and controls in bilateral posterior insula, middle cingulate cortex, bilateral calcarine cortex, left lingual gyrus, right central and parietal operculum, and planum temporale (Figure 1). Cerebellar volume deficit was most prominent in STXBP1. In an exploratory secondary analysis grouping patients by putative functional synaptic state, patients yielded comparable or stronger statistical separation in several regions, particularly the posterior insula. Age-related trajectories indicated a trend toward volume normalization in insular regions among STXBP1 and GRIN patients (Figure 2).

This analysis suggests gene-specific volumetric signatures, with the posterior insula and sensory cortices emerging as regions of particular interest. The insula is a shared region of structural vulnerability across genetic neurodevelopmental conditions [6], and our findings suggest that the direction and magnitude of volumetric effects may vary depending on the underlying genetic etiology. Notably, the convergence of GRIN-LoF and STXBP1 profiles, and their divergence from SYNGAP1, parallels patterns observed in 16p11.2 deletions/duplications, where opposing gene dosage effects produce mirror-image volumetric changes [7, 8]. One potential explanation is that distinct molecular mechanisms, postsynaptic signaling dysregulation in SYNGAP1 versus receptor/presynaptic dysfunction in GRIN/STXBP1, may differentially affect synaptic pruning and cortical maturation [9-11]. The posterior insula receives somatosensory inputs from the thalamus and is critically implicated in interoceptive and sensory processing. Increased volume in GRIN-LoF and STXBP1 could reflect reduced pruning in early sensory pathways or delays in neurodevelopmental trajectories [12], though the precise mechanisms require further characterization. Given the exploratory nature and modest sample sizes, these interpretations require replication in larger, more balanced cohorts.

This volumetric analysis across SYNGAP1, GRIN, and STXBP1 encephalopathies reveals gene-specific structural brain profiles, with the posterior insula and sensory cortices showing the most consistent differences. The convergence of GRIN-LoF and STXBP1 volumetric patterns, and their divergence from SYNGAP1, suggests that distinct molecular mechanisms may produce divergent neurodevelopmental trajectories. These findings support further investigation into the relationship between glutamatergic synaptic dysfunction, insular development, and sensory phenotypes in genetic encephalopathies.
Júlia ROMAGOSA PEREZ (Barcelona, Spain) , Juliana RIBEIRO-CONSTANTE , Natalia Alexandra JULIÀ-PALACIOS , Paula Juliana RODRÍGUEZ SOLER , Alejandra DARLING , Arnau VALLS-ESTEVE , Jordi MUCHART-LÓPEZ , Mireia OLIVELLA , Xavier ALTAFAJ , Christian STEPHAN-OTTO , Ángeles GARCÍA-CAZORLA
15:42 - 15:54 #54615 - PG054 Detecting hippocampal sclerosis in drug-resistant focal epilepsy by ASHS segmentation of hippocampal subfields at 3T and 7T.
PG054 Detecting hippocampal sclerosis in drug-resistant focal epilepsy by ASHS segmentation of hippocampal subfields at 3T and 7T.

Anti-seizure medications fail to adequately treat one third of people with epilepsy, often preventing them working or driving, and risking sudden unexpected death (SUDEP) [1]. Epilepsy surgery is the only curative treatment, but the odds of seizure freedom are 2-3x higher if a focal lesion can be visualised on MRI [2]. Hippocampal sclerosis (HS) is the commonest cause of focal epilepsy [3]. Hippocampal volumetry can be used as a presurgical tool to diagnose patients with HS, but standard 1.5T and 3T MRI don’t provide sufficient spatial resolution to accurately segment the hippocampus into subfields, which can be differentially affected [4]. Ultra High Field (UHF) MRI enables more precise delineation of hippocampal subfields, which has been shown to predict expected surgical outcome [3, 5]. In this study we compare automated segmentations of 3T and 7T data of adults with drug-resistant focal epilepsy (DRFE).

7T MRI scans for 56 (27f, 29m) adults with DRFE were obtained from a prior study [6] with single transmit (CP) and parallel transmit (pTx) scans for each participant. Patients gave written consent to participate, and for their prior clinical 3T MRIs retrieval. Participant ages were 34.5y (mean, range: 19-60y at the time of 7T), and 32.5y (15-59y at the time of 3T). 3D T1- and T2-weighted scans were pre-processed (Fig.1) and then segmented with ASHS (Automatic Segmentation of Hippocampal Subfields) [7] using the Penn ABC-3T ASHS Atlas [8] for 3T scans and IKND Magdeburg Young Adult 7T Atlas [9] for 7T. The segmented data were analysed using in-house code written in Matlab (v 2025b, Natick, MA). Out of 56 recruited subjects there were 49 complete 7TCP, 53 complete 7TpTx and 54 complete 3T datasets acquired. The automatic segmentation completed successfully for 49 7TCP, 53 7TpTx and 45 3T datasets. Sequences were compared by calculating Intraclass Correlation Coefficients (ICC). For each of the three modalities we tested if particular subfields normalised to the whole hippocampal volume were significantly smaller than the average, adjusted for age and sex using linear models. Z scores were calculated to check asymmetry for each subfield. Finally, a combined “Total” CA1, CA2, CA3, DG, and Sub volume was calculated, representing the areas affected by type 1 HS [3]. After the statistical analysis the researchers were unblinded to clinical multi-disciplinary team (MDT) reports for each patient.

For “Total” hippocampal volume the ICCs between 3T and 7TCP and between 3T and 7TpTx show similar overall moderate agreement (0.637-0.738) [10], while 7TCP vs 7TpTx display excellent agreement (0.966-0.976) [10] (Tab.1). For subfields, 7TCP vs 7TpTx display excellent agreement for CA1 and Subiculum, but only moderate to good agreement for CA2 and CA3, and good to excellent agreement for Dentate Gyrus. Only subiculum reached moderate agreement for 3T vs 7T comparison. Significant abnormalities in Total volume were detected in 18 patients; one of them (Patient 15) has had surgery with confirmed HS at neuropathology and is seizure free for 15 months (detected only by 7T); three have booked surgery based on imaging and EEG (identified by both 3T and 7T); 5 have abnormalities reported by the MDT which are either not operable or wait for the decision (Tab.2). None of the remaining 9 patients was reported to have hippocampal abnormalities – one of them was detected by both 3T and 7T, 3 were detected by 7T only and 5 were detected by 3T only. Additionally, Patient 1 who also has had surgery and is seizure free for 2 years didn’t have abnormal Total volume, but displayed abnormalities in other subvolumes (detected by both 3T and 7T) (Tab.2).

Good agreement of the segmentation results between 3T and both 7T confirms that hippocampal subfield segmentation of the UHF data is consistent with widely applicable 3T MRI. 7T MRI results detected two histologically confirmed HS subjects, while 3T detected only one. Other patients waiting for surgery and with other known abnormalities were detected by both 3T and 7T. Previous studies showed that automatically segmented 7T MRI can detected structural differences in hippocampal subfields volume and asymmetry in mesial TLE patients (with previous negative 3T) compared to controls [11]. Another study concluded that only ex-vivo 3T can match in vivo 7T in consistently correlating subfields pattern with ILAE-HS subtypes [4]. Here we confirm higher sensitivity of automated UHF subfields segmentation which on average across the subjects with known hippocampal abnormalities, detected 6.4 subfields (7TCP), 4.8 subfields (7TpTx) in comparison to 3T which detected 4.1 among the patients listed in Tab 2.

The automated hippocampal subfield segmentation for both 3T and 7T MRI was able to detect abnormalities concordant with histology and imaging and EEG data. Additional abnormalities found by the hippocampal subfield segmentation were reviewed and correlated with abnormalities reported by the MDT.
Krzysztof KLODOWSKI (Cambridge, United Kingdom) , Ernie VISICK , Anmol KAUR , Albulena SHALA , Thomas COPE , Chris RODGERS
15:54 - 16:06 #54684 - PG055 Assessment of paramagnetic rim lesions three months and two-years post-treatment with either Rituximab or Cladribine.
PG055 Assessment of paramagnetic rim lesions three months and two-years post-treatment with either Rituximab or Cladribine.

Paramagnetic rim lesions (PRLs) are markers of chronic inflammatory activity in multiple sclerosis (MS) and have been associated with higher disease severity (1). The objective of this study is to identify PRLs at rebaseline and two-years after treatment in people with MS (pwMS). Firstly, qualitatively in accordance with the new MS diagnostic criteria in filtered phase images (2), and secondly, quantitatively with quantitative susceptibility mapping (QSM). We used the open-label prospective NOR-MS study, where pwMS were randomized 1:1 to two highly effective disease-modifying therapies (DMTs) with either Rituximab or Cladribine.

At Oslo University Hospital, one hundred fifty people with MS (pwMS) were recruited in a multi-site two-armed treatment study (NOR-MS) (Figure 1). At two time-points, three (rebaseline) and 24 months after treatment, respectively, pwMS were scanned in a 48-channel AIR-coil on a GE Signa Premier MRI with a research protocol, including amongst others, T1-weighted MPRAGE and T2-weighted FLAIR and a clinical 0.8x0.9x2 (interpolated to 0.5x0.5x1) mm3 3D multi-echo (7 TE; 14:3.8:36 ms, average TE=24.9ms) GRE sequence (TR=39.9ms, FA=10̊ ) for susceptibility-weighted angiography (SWAN). The PRLs were identified by a single experienced rater, where a subset the patient data were rated by a more experienced MS radiologist. T2-lesions identified on FLAIR were checked for positive rims on SWAN-derived filtered phase images, based on the method described by the 2024 McDonald criteria (2).

Patients missing filtered phase images at either time-point were excluded, resulting in a final sample of 117 patients with available scans at both time-points. At rebaseline, 114 PRLs were identified in 49 patients (42 %), decreasing to 99 PRLs in 38 patients (32 %) at follow-up. The mean [SD] number of PRLs per patient was 0.97 [1.9] at baseline and 0.85 [1.8] at follow-up, with a range of 0–12 at both time-points. The median [IQR] number of PRLs was 0 [1] at both time-points. Between scans, 16 of 114 (14 %) PRLs disappeared: 16 patients lost one PRL each, while only one new PRL appeared in a single patient. PRLs were defined as lesions with a dark rim present in at two-thirds of the lesion rim (Figure 2). Figure 3 shows an example where it was not possible to identify a PRL even though there is a lesion present in the filtered phase image with a hyperintense instead of a dark rim. In Figure 4 the PRL is confirmed by a positive concentric rim in QSM. Results will be analyzed according to treatment allocation and presented at the conference.

Our results so far show that PRLs are highly prevalent in MS, making them a crucial non-invasive diagnostic and prognostic marker (3,4). In a recently published NOR-MS study from our group, only six PRLs were identified among 40 pwMS using QSM at rebaseline (5). A possible explanation for the discrepancy with the current work, which relies solely on filtered phase images for PRL identification, is a higher rate of false positives. At the two-year follow-up, we have both QSM and SWAN-filtered phase images. Ahead of the conference, the filtered phase-identified PRLs will be compared and validated by QSM to rule out false positive PRLs (6). Thereafter, the radiologists will be unblinded to treatment allocation, and further analyses will assess how treatment with Rituximab and Cladribine influences clinical and radiological outcomes in pwMS.

As identified with filtered phase, PRLs were present in 42 % of pwMS at rebaseline. Only one new lesion appeared, and 16 lesions could not be identified, after two years as compared to the rebaseline. The findings need to be confirmed by QSM.
Blagojevic DRAGOLJUB (Oslo, Norway) , Rigmor LUNDBY , Piotr SOWA , Elisabeth GULOWSEN CELIUS , Mathias HERSTAD ØVERÅS , Gro NYGAARD , Einar A HØGESTØL , Lars SKATTEBØL , Wibeke NORDHØY
16:06 - 16:18 #54587 - PG056 MRI Radiomic Signature for Estimating Lesion Chronology in Multiple Sclerosis.
PG056 MRI Radiomic Signature for Estimating Lesion Chronology in Multiple Sclerosis.

Demonstration of dissemination in time (DIT) is a key component of the McDonald criteria for the diagnosis of MS. DIT is usually established by simultaneous presence of gadolinium-enhancing and non-enhancing lesions or by the detection of new lesions on follow-up MRI. However, gadolinium use is increasingly discouraged, and longitudinal follow-up delays diagnosis. Estimating temporally distinct lesion phenotypes from a single baseline MRI could therefore provide a clinically practical alternative. The goal of this study was to investigate whether radiomic features derived from single MRI can classify MS lesions into temporally distinct categories to estimate DIT.

This retrospective longitudinal study included 273 individuals with MS (mean [range] age = 39 [18-62] years), with a median number of 6 MRI acquisitions per subject and a mean inter-acquisition interval of 1.7 years. A total of 7743 lesions were segmented on FLAIR MRI and tracked across serial scans after registration to baseline space. Based on longitudinal evolution, lesions were assigned to two temporally distinct categories: 3778 long-standing established (LS-E; present at baseline and persisting for more than 6 years) and 1223 recent incident (R-I; appearing within less than 2 years between consecutive MRIs). Lesions with intermediate temporal profiles were excluded. Radiomic features were extracted at lesion level from T1-weighted MRI using Pyradiomics. Feature selection was performed in an independent discovery group (n=55) using paired statistical comparisons and effect size criteria (Cohen's d |>0.8|, p-FDR<0.05). Selected features were then used to train a support vector machine classifier with repeated group-wise cross-validation (n=163). Final performance was assessed in an independent test cohort (n=55). To interpret model predictions, SHAP values were calculated for the final classifier, allowing estimation of the relative contribution and directionality of each radiomic feature in distinguishing LS-E from R-I lesions.

Eighteen radiomic features showed significant differences with above threshold effect size between LS-E and R-I lesions. In the independent test cohort, the classifier achieved moderate discrimination between lesion groups, with an area under the curve of 0.778. Overall, 66% of true R-I lesions and 73% of true LS-E lesions were correctly classified (Figure 1). SHAP analysis showed that model predictions were mainly driven by intensity- and texture-related features, including Maximum, 10 Percentile, Median, Run Length Non-Uniformity Normalized, 90 Percentile, Run Variance, and Run Entropy, with additional but lower-ranked contributions from shape descriptors.

This study provides proof-of-concept evidence that lesion chronology leaves a measurable radiomic signature on conventional MRI. Using longitudinal follow-up only to define temporally distinct lesion categories, we show that long-standing established and recent incident MS lesions differ in their T1-derived radiomic profile and can be moderately discriminated from a single scan. The selected features suggest that temporal differences are expressed through a multidimensional pattern involving signal intensity, morphology, and texture, rather than a single imaging characteristic. These findings support the idea that chronology represents a relevant dimension of lesion heterogeneity, although the radiomic differences should not be interpreted as direct markers of specific biological mechanisms. Clinically, this approach may help estimate lesion temporal composition when dissemination in time is uncertain or when gadolinium administration and prolonged follow-up are unavailable. However, the moderate test performance indicates that this remains exploratory. External validation across scanners, protocols, and independent cohorts will be required before clinical implementation.

These findings support the idea that lesion chronology leaves a measurable signature on conventional MRI and that temporally distinct lesion categories can be identified from a single MRI using radiomics. This approach may contribute to MRI-based estimation of DIT without relying on gadolinium or prolonged longitudinal follow-up.
G-Guzman ELVIRA , G-Guzman ELVIRA (Barcelona, Spain) , Casajuna-Larqué ALBERT , Alberich MANEL , Bollo LUCA , Neus MONGAY-OCHOA , Martinez-Heras ELOY , Vidal-Jordana ANGELA , Montalban XAVIER , Tintoré MAR , Rovira ÀLEX , Jaume SASTRE-GARRIGA , Deborah PARETO
16:18 - 16:30 #54668 - PG057 T2- and ADC-Derived Radiomics Feature Correlates of Overall Survival in H3K27M-Mutant Pediatric Diffuse Midline Gliomas.
PG057 T2- and ADC-Derived Radiomics Feature Correlates of Overall Survival in H3K27M-Mutant Pediatric Diffuse Midline Gliomas.

Diffuse midline gliomas (DMGs) arise from midline structures of the central nervous system, primarily the thalamus, brainstem, and spinal cord. H3K27M-mutant DMGs are WHO grade 4 tumors with a mean OS of nine months and a two-year survival rate below 10% [1]. Despite highly aggressive behavior, these tumors often exhibit low-grade histopathological features, and the relationship between MRI characteristics and molecular subtypes remains unclear [2,3]. T2w MRI provides structural information, while apparent diffusion coefficient (ADC) maps offer information on tissue cellularity and microstructural integrity [4]. Together, these MRI modalities provide complementary information about tumor characteristics, which can be quantitatively captured by radiomics analysis through the extraction of high-dimensional imaging features [5]. This study aims to identify T2w- and ADC-based radiomics features correlating with OS in H3K27M-mutant pediatric DMGs.

Thirty-eight pediatric patients (21F/17M; mean age=8±4y) with H3K27M-mutant DMGs were retrospectively evaluated (Table 1). The study protocol was approved by the Institutional Ethics Review Board, all participants provided written informed consent, and all data were handled in accordance with the relevant ethical guidelines. Mortality rate was 89.5% with a mean OS time of 18 months. All patients were scanned with a protocol including pre- and post-contrast T1w MRI (TR/TE=559/10ms, slice thickness=3mm), T2w MRI (TR/TE=7320/104ms, slice thickness=3mm), T2-FLAIR (TR/TE=8600/92ms, slice thickness=3mm), and DWI-EPI (TR/TE=5600/69ms, slice thickness=1.8mm, b=1000s/mm2) on a 3T clinical MRI scanner (Siemens Healthineers, Erlangen, Germany). Tumors were segmented from T2w MRI via 3D Slicer [6]. Tumor masks and T2w MRI were registered to ADC maps via SPM12 [7], and radiomic features were extracted from both modalities using PyRadiomics [8]. From 1820 extracted features, variance thresholding (0.05) and collinearity filtering (±0.75) were applied, followed by LASSO-based feature selection. Features with selection frequencies above 60% across 100 iterations were retained. Univariate Cox proportional hazards analyses were performed for selected radiomic features and clinical variables (age, gender, necrosis, contrast enhancement, tumor location). Variables with potential association with OS were then included in the multivariate Cox regression model. Kaplan–Meier survival analysis was performed for each selected radiomic feature using median-based group stratification.

Figure 1 shows two representative H3K27M-mutant pediatric DMG cases with pons and thalamus localizations. According to LASSO, two radiomic features from T2w MRI, lbp-3D-m1_firstorder_Median (78%) and wavelet-HLL_firstorder_Skewness (77%), and two radiomic features from ADC maps, log-sigma-3-0-mm-3D_firstorder_Maximum (89%) and logarithm_glszm_LargeAreaHighGrayLevelEmphasis (62%), were selected for further analyses. From T2w radiomic features, lbp-3D-m1_firstorder_Median was significantly associated with OS in the Kaplan–Meier analysis, where patients with higher values demonstrated longer survival (log-rank p=0.019, Figure 2A). Among ADC-derived radiomic features, logarithm_glszm_LargeAreaHighGrayLevelEmphasis showed a trend toward association with OS in Kaplan–Meier analysis (log-rank p=0.081, Figure 2B). In univariate Cox analysis, both lbp-3D-m1_firstorder_Median and wavelet-HLL_firstorder_Skewness were significantly associated with OS (p=0.02 and p=0.03, respectively). However, correlations of ADC-based radiomics features were not statistically significant (p=0.09 and p=0.1). Among the clinical variables, age and tumor location demonstrated trends toward significance (p=0.08 and p=0.09, respectively), whereas gender was not significantly correlated with OS. In the multivariate Cox model including age, tumor location, and both T2w features, none of the variables reached statistical significance (Table 2).

T2-derived LBP texture and wavelet features were significantly correlated with OS in univariate Cox analysis. Higher LBP feature values, reflecting local texture micro-patterns and intensity transitions within the tumor, were associated with longer OS. Higher wavelet-HLL_firstorder_Skewness values, reflecting asymmetry in tumor intensity distribution, were similarly associated with longer OS. ADC-derived features reflecting large high-intensity regions within the tumor showed trends toward longer OS. The small sample size is the primary limitation. Future studies will include larger cohorts to validate the results.

This study highlights the potential prognostic value of radiomics features in H3K27M-mutant pediatric DMGs from two MRI modalities. T2-derived texture features were significantly associated with OS, while ADC-based features showed trends toward significance. These results suggest that multimodal MRI radiomics may serve as a promising non-invasive tool for prognosis assessment in pediatric DMGs.
Melisa OZAKCAKAYA (Istanbul, Turkey) , N. Tugay GUVEN , Emir KULAKOGLU , Gokce Hale HATAY , Esra SUMER-ARPAK , Ayca ERSEN DANYELI , Memet ÖZEK , Bahattin TANRIKULU , Alp DINÇER , Esin OZTURK-ISIK
Sala Simfònica

"Saturday 03 October"

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B34
15:30 - 16:30

FT3-6 - Round Table FT Machines
AI assistance & foundation models in MRI

Keynote Speakers: Mariya DONEVA (Senior Scientist) (Keynote Speaker, Hamburg, Germany), Vera KEIL (Consultant) (Keynote Speaker, Amsterdam, The Netherlands), Efrat SHIMRON (Assistant Professor) (Keynote Speaker, Haifa, Israel)
FT Machines
Sala de Cambra

"Saturday 03 October"

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C34
15:30 - 16:30

OC3-1 Scientific session
Clinical Applications in the Spinal Cord

15:30 - 15:42 #54702 - PG058 Mapping the Temporal Dynamics of Spinal Cord Perfusion After Injury With IVIM MRI.
PG058 Mapping the Temporal Dynamics of Spinal Cord Perfusion After Injury With IVIM MRI.

Traumatic spinal cord injury (SCI) triggers a cascade of pathological events, including sensorimotor dysfunction and impaired microvascular perfusion 1,2. The impaired microvascular perfusion contributes to ongoing neurodegeneration and poor functional outcomes 3,4. Spatiotemporal morphological information is required to explore potential treatments targeting the microvasculature post-SCI and to improve functional recovery. Intravoxel incoherent motion (IVIM) MRI, has shown promise for detecting perfusion abnormalities across various neurological conditions 5,6, in both non-traumatic 7 and traumatic SCI 4 with good reproducibility in healthy participants8. This study employed IVIM-MRI to characterize the trajectories of perfusion impairment rostral to a cervical lesion (C1–C3). We hypothesized that remote perfusion remains altered over time after injury and that its longitudinal trajectory is in line with structural degeneration.

Participants: The study was approved by the local Ethics Committee (EK-2018-00937). All participants provided informed written consent prior to study enrolment. Twelve acute traumatic cervical SCI with injury between C4 and C7, and < 30 days post-SCI (mean age: 48.7 ± 14.4y, 7 male) and 20 healthy controls (HC) (52.7 ± 10.3y, 10 male) were enrolled at the Spinal Cord Injury Center of the Balgrist University Hospital between 2021 and 2025 (Table 1). MRI acquisition All subjects were scanned on a 3T MR scanner (MAGNETOM Prisma), equipped with a 64-channel head/neck RF coil. The IVIM was based on a cardiac-gated, EPI ZOOMit with TR: 1800 ms (nominal: 600 ms), TE: 58 ms, FOV: 101 × 31.8 mm2, resolution: 0.9 × 0.9 × 5 mm2, 9 slices, 14 b-values (0-650 s/mm2, increment of 50) 8. A 3D axial T2*-weighted MRI scan was performed for the delineation of the cross-sectional area of white and grey matter (WMA, GMA) for the atrophy. The total scan time was ~50 Min. Image processing IVIM maps were generated using a processing pipeline based on the IVIM toolbox 10, previously evaluated 8. Exponential fitting provides four IVIM maps: microvascular volume fraction (F), blood velocity (D*), and tissue diffusion (D), and FD* which is sensitive to blood flow evaluated 8. Registration of the images and maps to the PAM50 template 11. and WM atlas was conducted using SCT. Statistical analysis was performed using R. Group differences were tested with two-sample Student’s t-tests (p=0.05).

Comparison between groups at baseline: The WMA, averaged across C1-C3, was significantly smaller in SCI compared to HC whereases there was no significant group difference in the GMA At baseline, there was no significant difference between SCI and HC across all IVIM parameters, (Figure 1, Table 2) Longitudinal comparison Perfusion: Mean perfusion maps visually showed lower F and higher D* in SCI over time (Figure 2). The microvascular volume fraction displayed higher signal intensity in the anterior part of the GM in both cohorts. In SCI, there was a significant rate of decrease in F in GM over 6 months (-20.2%, p=0.0156) and an increase in D* (+23.1%, p=0.0155). Furthermore, there was a significant difference between the rates of HC and SCI for F (p = 0.02), and D* (p = 0.03). However, there was no significant temporal change in WM (Figure 3). WMA is significantly decreased (-4.7%, p=0.0256) and GMA (-8.8%, p<0.001) in SCI over 6 months. Additionally, the difference between rate of changes in HC and SCI was significant (p = 0.0001). Relationships with sensorimotor impairment: At 6-months post-SCI, higher F showed a positive trend with better UELT scores, while no perfusion metrics correlated significantly with sensorimotor or clinical scores.

Using longitudinal IVIM MRI in cervical cord acute SCI and healthy participants at three time points, we found progressive rostral (C1–C3) gray-matter perfusion deficits paralleling tissue atrophy over six months in line with previous report 4,12. At the baseline we observed early white-matter atrophy, while gray-matter and perfusion changes were not yet significant, suggesting early remote atrophy may be from axonal disconnection/inflammation rather than microvascular failure. Perfusion decline in gray-matter emerged across follow-ups consistent with its high metabolic demand 13and prior reports supporting secondary microvascular compromise as a driver of remote neurodegeneration 3These results highlight grey-matter vulnerability and motivate microvascular-targeted therapies. Nevertheless, future studies with larger cohorts and longer follow-up periods are warranted to confirm these observations and enhance statistical power.

This study advances the clinical application of perfusion MRI by demonstrating that IVIM-MRI can noninvasively quantify remote microvascular perfusion changes after SCI, offering a potential biomarker for monitoring neurovascular changes, guiding therapeutic microvascular strategies.
Anna LEBRET , Simon LÉVY , Armin CURT , Virginie CALLOT , Patrick FREUND , Maryam SEIF (Zurich, Switzerland)
15:42 - 15:54 #54253 - PG059 GQI-based diffusion MRI identifies a mid-cervical microstructural hotspot in brachial plexopathy.
PG059 GQI-based diffusion MRI identifies a mid-cervical microstructural hotspot in brachial plexopathy.

Brachial plexopathies comprise a heterogeneous group of disorders affecting the brachial plexus (BP) and adjacent cervical spinal cord pathways, often resulting in pain, weakness, and sensory deficits. Conventional MRI and MR neurography (MRN) can detect macroscopic structural abnormalities (1); however, subtle microstructural changes remain difficult to quantify. Advanced diffusion MRI metrics derived from generalized q-sampling imaging (GQI), including Quantitative Anisotropy (QA), Isotropic Diffusion (ISO), Restricted Diffusion Imaging (RDI), and the QA/ISO ratio (QIR), may provide improved sensitivity to axonal injury and fiber disorganization (2-3). This study aimed to compare GQI-derived diffusion metrics between healthy controls and patients with brachial plexopathy across the whole brachial plexus and cervical segments C5–T1.

Twelve patients with clinically confirmed brachial plexopathy (mean age 44.6 ± 13.4 years; range 18–63 years) and 12 healthy controls (mean age 37.4 ± 13.4 years; range 18–57 years) underwent MRI on a 3T scanner using an 18-channel body coil and a 64-channel head/neck coil. The imaging protocol included multi-shell diffusion-weighted imaging (TR/TE 5500/83 ms, 62 diffusion directions, 9 b-values between 0–950 s/mm², voxel size 3×3 mm², acquisition time 6:18 min) and coronal 3D STIR-SPACE MR neurography (TR/TE 3000/271 ms, TI 230 ms, voxel size 1×1 mm², acquisition time 10:56 min). Diffusion data were corrected for susceptibility distortions using reversed phase-encoding b0 images and TOPUP implemented in TinyFSL (Tiny FSL: http://github.com/frankyeh/TinyFSL). Data processing and tractography were performed in DSI Studio using the GQI reconstruction algorithm (DSI-Studio). MR neurography assessment was performed using medInria software (med.inria.fr) (Figure 1). Patient diagnoses included trauma-related plexopathies (n = 5), thoracic outlet syndrome (n = 2), root avulsions (n = 2), inflammatory lesion (n = 1), root rupture (n = 1), and focal C6 lesion (n = 1). Quantitative analysis was performed for the whole brachial plexus (BP_whole) and cervical segments C5–T1. Evaluated metrics included QA, ISO, RDI, and QIR. Group differences were assessed using the Mann–Whitney U test, and effect sizes were quantified using Cohen’s d.

Patients with plexopathy demonstrated consistently lower QA and QIR values compared with controls across multiple cervical segments. Significant reductions in QA were observed in BP_whole (p = 0.026, d = 1.05), C5 (p = 0.035, d = 0.84), C6 (p = 0.040, d = 1.03), and C7 (p = 0.006, d = 1.19). QIR also demonstrated significant differences in BP_whole (p = 0.026, d = 1.06), C6 (p = 0.023, d = 0.93), and C8 (p = 0.035, d = 1.01). ISO demonstrated limited sensitivity, with a significant difference detected only in C7 (p = 0.017, d = 0.85). Similarly, RDI reached significance only in C7 (p = 0.012, d = 0.91), despite moderate-to-large effect sizes in several additional segments. Heatmap analysis of Cohen’s d demonstrated predominantly medium-to-very-large effect sizes for QA and QIR, particularly within the C6–C7 segments. Segmental diffusion profiles showed similar proximal-to-distal trends in both groups, although patients exhibited systematically lower QA, RDI, and QIR values (Figure 2).

The findings indicate that GQI-derived diffusion metrics are sensitive to microstructural abnormalities associated with brachial plexopathy. QA and QIR demonstrated the strongest discriminatory performance, suggesting that anisotropy-sensitive parameters may better reflect axonal integrity and fiber organization than isotropic diffusion measures alone. The most pronounced alterations were observed in the mid-cervical region, particularly at C7, suggesting a potential microstructural “hotspot” vulnerable to pathological involvement or mechanical stress. In contrast, ISO demonstrated relatively limited sensitivity, indicating that isotropic diffusion changes may be less prominent in this cohort. The combination of significant group differences and large effect sizes supports the potential utility of QA – and QIR-based biomarkers for quantitative plexus assessment.

Advanced GQI-derived diffusion MRI metrics, particularly QA and QIR, revealed significant microstructural alterations in patients with brachial plexopathy, with the strongest effects observed in the mid-cervical region (C6–C7). These findings support the use of anisotropy-sensitive diffusion biomarkers for quantitative assessment of brachial plexus pathology and highlight their potential role in future diagnostic and longitudinal MRI studies. Supported by the Ministry of Health of the Czech Republic in cooperation with the Czech Health Research Council under project No. NW 24-08-00086 and DRO (IKEM, IN 00023001).
Ibrahim IBRAHIM (Prague, Czech Republic) , Jaroslav TINTĚRA , Ivan HUMHEJ , Vlasta FLUSSEROVA , Antonín ŠKOCH , Theodor ADLA
15:54 - 16:06 #54605 - PG060 Multiparametric characterization of cervical spinal cord involvement in women with X-linked adrenoleukodystrophy: preliminary results from the ARISE study.
PG060 Multiparametric characterization of cervical spinal cord involvement in women with X-linked adrenoleukodystrophy: preliminary results from the ARISE study.

X-linked adrenoleukodystrophy (X-ALD) is a neurometabolic rare disorder caused by ABCD1 pathogenic variants, leading to very long-chain fatty acids accumulation. Men can present with adrenal insufficiency, cerebral demyelination and a progressive myelopathy called adrenomyeloneuropathy (AMN) [1,2]. Women were long considered as mildly symptomatic carriers, given that cerebral and adrenal gland involvement are exceptional[3–5], and that AMN symptoms appear inconstantly, later in life and progress more slowly than in men [3,4,6]. However, up to 80% of women develop symptoms highly affecting quality of life [7]. Because of this insidious disease course, women with AMN are underdiagnosed, undertreated, and underrepresented in clinical trials. In particular, multiparametric quantitative MRI (qMRI) studies investigating AMN-related spinal microstructural alterations in women are lacking, although it has detected signs of axonal degeneration and demyelination in corticospinal (CST) and proprioceptive tracts in men with AMN [8,9]. We conducted a two-year observational study in women with AMN using a multimodal approach combining clinical assessment and spine qMRI. We evaluated the ability of qMRI biomarkers to distinguish patients from controls and assessed their natural evolution in patients. Our aim was to explore microstructural alterations of cervical spinal cord in women with AMN and identify the biomarkers most sensitive to disease progression over a two-year period.

We enrolled 35 women with AMN (age: 55 ± 10) and 10 healthy women (55 ± 6) at La Pitié-Salpêtrière Hospital (Paris, France) since January 2024. Patients were assessed yearly with the Expanded Disability Status Scale (EDSS), calibrated measures of body sway and cervical cord imaging on a 3T MRI scanner. The protocol included T2-weighted images (T2-w), GRE images without and with magnetization transfer (MT), and diffusion-weighted images along 30 directions. Analyses were done with the Spinal Cord Toolbox [10]. Cross-sectional area (CSA) was computed from C2 to T1 after a deep-learning based cord segmentation on T2-w and manual labelization of vertebral levels. MT ratio (MTR) was computed after rigid coregistration of GRE images with and without MT and calculated from C2 to C6 after cord segmentation and non-linear registration to the PAM50 template for level labelization. Diffusion data were motion-corrected and fitted to the DTI model to extract fractional anisotropy (FA), radial diffusivity (RD), axial diffusivity (AD) and mean diffusivity (MD) from C2 to C5 with the same methodology. DTI metrics were analyzed in total white matter (WM) and its 3 subregions for independent analysis of long tracts, i.e., CST (in lateral and ventral funiculi) and proprioceptive pathways (in dorsal columns) (Figure 1). Statistical analyses were performed with R software. The Wilcoxon test was used for baseline group comparisons and pairwise longitudinal comparisons within patients. Statistical significance was set at p < 0.05.

At baseline, patients had significantly reduced CSA from C2 to T1 (- 18.4 %) and MTR from C1 to C6 (- 6.5%) compared to controls (Table 1, Figure 2A, 2B). FA was significantly decreased, and MD and RD were significantly increased in patients in all WM subregions (Table 1) with a slight predominance at upper levels (C2-C4) (Figure 2C). After one year, CSA and MTR were overall stable whereas we observed a mild increase of MD (+ 11%) and RD (+ 22%) in ventral funiculi (Table 1) that was not significant at the vertebral level scale (Figure 3). No correlation was observed between EDSS scores and qMRI metrics.

Our findings confirm that women with AMN exhibit cervical spinal cord atrophy associated with decreased MTR and FA, and increased RD across all cervical levels and WM subregions, consistent with demyelination and in line with previous observations in men [8,9]. In contrast to men, no decrease in AD was observed suggesting that demyelination may precede axonal degeneration in women. After one year, we observed a mild increase of MD and RD in the ventral funiculi, potentially reflecting ongoing demyelination within the CST which is a primary target of X-ALD [11]. The other qMRI metrics were overall stable, consistent with the slow disease progression in women and the subtle alterations observed over a two-year period in men [12]. Analysis of the two-year data will further assess the sensitivity of these measures to disease progression. No correlations were found between EDSS and qMRI metrics, likely reflecting the low specificity of EDSS for myelopathy. Ongoing correlation analyses with body sway metrics [13] may better capture how morphometric parameters of the spine reflect myelopathy progression.

These preliminary results demonstrate that AMN affects the microstructure of all WM subregions of the cervical spinal cord in women, similarly to men, underscoring the need for a better characterization of disease burden in this understudied population.
Marianne GOLSE (Paris) , Mohamed-Mounir EL MENDILI , Anne-Marie MUKUNDWA , Irene GARCIA-RAMOS , Bernardo BLANCO-SANCHEZ , Hemmo A. F. YSKA , Sílvia PASCUAL , Fanny MOCHEL
16:06 - 16:18 #54695 - PG061 Measurement of Quantitative Susceptibility Mapping of the spinal cord in people with Multiple Sclerosis and Association With Clinical Disability.
PG061 Measurement of Quantitative Susceptibility Mapping of the spinal cord in people with Multiple Sclerosis and Association With Clinical Disability.

Quantitative susceptibility mapping (QSM) is an advanced MRI technique that links phase variations to the local tissue susceptibility. In multiple sclerosis (MS), QSM has shown promise in characterizing brain lesions by assessing chronic inflammation and myelin content. However, in the spinal cord (SC), the question remains as to whether QSM can classify MS lesions as demyenilated/ remyenilated and detect chronic inflammation. SC QSM poses novel challenges due to the small size, mobility and curvature of the cord, as well as magnetic field inhomogeneities caused by nearby vertebrae and physiological movement. A recent study has shown the potential of SC QSM to distinguish gray matter (GM), white matter (WM), and MS lesions. Building on these results, the goal of this study is to evaluate the potential of SC QSM as a biomarker in MS by assessing i) its sensitivity to tissue alterations in pwMS compared to healthy controls (HC) ii) its association with other spinal cord quantitative MRI metrics associated with myelin content such as magnetisation transfer ratio (MTR) and iii) its association with clinical disability.

Seventeen healthy controls (HC) and 55 pwMS (54 relapsing-remitting, 1 progressive). were included in a prospective study (clinical trials ID: NCT05622643). 3T cervical spinal cord acquisitions included 3DMP2RAGE (0.9x0.9x1mm3) and axial T2* (0.4x0.4x3mm3) for lesion identification, 3D gradient echo sequences with (MT1) and without (MT0) prepulse and 0.4x0.4x5mm3 voxel size for MTR measurement (4) and 3D multi-echo GRE acquisitions with 12 in-phase and 12 out-of-phase echoes and 0.4×0.4×1mm3 voxel size for QSM at the C3-C5 level. After spinal cord segmentation, total field computation and laplacian based phase unwrapping QSM maps were computed using the projection into dipole fields algorithm to remove the background field (5). The MEDI (morphology enabled dipole inversion) approach was used to solve the field-to-susceptibility inversion (6). MS lesions were then segmented and each spinal cord lesion was classified as iso, hypo or hyper QSM according to its QSM values while MTR values were computed as (MT0-MT1)/MT0. Mean QSM and MTR values in the white (WM) and grey matter (GM) at the C3-C5 level were extracted, compared and the association with clinical disability was assessed.

A total of 90 SC lesions were segmented (SCT 6.5) and classified as hypointense (n=8), isointense (37), and hyperintense (45). No rim positive lesion was identified. In GM, a significant reduction of susceptibility in MS patients was observed compared to HC (mean (SD) = 1.93 (1.34) ppb vs 2.97 (1.20), p = .01). WM QSM values did not differ significantly between groups (−0.84 (0.66) vs −1.06 (0.47); p = 0.19). Significant associations were observed between WM QSM and SC lesion load (ρ = .568, p < .001 ), and GM QSM and SC lesion load (ρ = −.639, p < .001 ). A significant association was found between QSM and MTR in WM (r = -.31 , p = .009), but not in GM (r = .15, p = .22). A moderate positive correlation was found between WM QSM (ρ = .40, p = .004) and EDSS, and between GM QSM and EDSS (ρ = - .31, p = .027), independently of age, disease duration, gender and SC lesion load.

Tissue alteration in GM and WM in pwMS can be measured with QSM as with MTR. Different QSM lesion patterns (hypo, iso, hyper) were observed yet no rim lesions identified. A predominance of hyperintense lesions was reported, which could be suggestive of demyelination. WM and GM QSM values were associated with MTR and with the level of disability.

This work shows that SC QSM is sensitive to tissue alterations in both GM and WM in pwMS as compared to healthy controls and partially correlates with compared MTR Further analysis is ongoing on a broader sample of subjects to confirm and refine these results.
Benjamin STREICHENBERGER , Malo GAUBERT , Mathieu SANTIN , Ludovic DE ROCHERFORT , Quentin DUCHÉ , Catherine GUILLEMOT , Samira MCHINDA , Stéphane ROCHE , Anne KERBRAT , Elise BANNIER (RENNES)
16:18 - 16:30 #54716 - PG062 Quantification of MS Lesion Severity and diffuse extra-lesional damage in the Brain and Cervical Spinal Cord from an 8-minutes quantitative T1 MP2RAGE Sequence and its Association with Disability.
PG062 Quantification of MS Lesion Severity and diffuse extra-lesional damage in the Brain and Cervical Spinal Cord from an 8-minutes quantitative T1 MP2RAGE Sequence and its Association with Disability.

MP2RAGE [1] is a fast quantitative T1 (qT1) MRI sequence capable of imaging the brain and cervical spinal cord (cSC) within 8 minutes [2] making it suitable for clinical practice. Beyond lesion identification, it quantifies tissue damage through qT1 alterations both within and outside lesions [3,4]. The clinical utility of these additional metrics, compared with brain and spinal cord lesion load, remains to be evaluated. Objectives are (i) to assess severe lesion volume as well as the degree of diffuse microstructural damage in the brain and cSC in people with MS (pwMS) using qT1 (ii) to compare these metrics across phenotypes; (iii) to evaluate the association between these metrics and disability at baseline and disability progression at 2-year.

231 pwMS (172 pw Relapsing Remitting MS (RRMS) and 59 pw progressive MS (PMS)) and 88 healthy controls (HC) were scanned in 5 centers at 3T. Brain 3D FLAIR, brain and cSC MP2RAGE and B1map were acquired. Brain and cSC lesions were automatically segmented. Z-score maps were calculated at the voxel level by comparing qT1 values in pwMS with matched HC for each center. The threshold for a severe lesion voxel was defined as 2.58[5]. Association between baseline EDSS and lesion volume in the brain and cSC, severe lesion volume, mean z-score in the brain white matter and in the cSC was assessed using a stepwise multivariable linear model adjusted for age, gender, disease duration and phenotype. Association with EDSS progression at 2-year was evaluated.

The mean percentage of lesion voxels out of the whole brain and cSC volume respectively, was 3.7 % and 17.6 % in PMS and 1.8 % and 7.6 % in RRMS. P-value associated with no difference in lesion volume between MS phenotypes in the brain was 0.003 and in the spinal cord was 9.10-5. The mean percentage of lesion voxels classified as severe out of the whole brain and cSC volume respectively, was 2.5% and 9.0% in PMS and 1.2% and 3.8% in RRMS. P-value associated with no difference between MS phenotypes in the brain was 0.005 and in the spinal cord was 0.0004. Regardless of the phenotype, the volume of severe lesion and the overall lesion volume was very correlated in the brain 0.98 (p<0.005) and in the spinal cord 0.92 (p<0.005). The mean qT1 z-score was significantly higher in the normal appearing cSC in PMS compared to RRMS (1.0(0.6) vs 0.6(0.6), p<0.001) but not in the normal appearing white matter in the brain (1.0(0.3) vs 0.9(0.3), p=0.06). The baseline EDSS was independently associated with disease phenotypes (p<0.001), age (p=0.003), cSC qT1 average z-score (p=0.07) and volume of severe lesion in the brain (p<0.001) but not with the other metrics. Only severe lesion volume in the spinal cord (p=0.006) was associated with progression of the EDSS score at 2 years (data available for only 91 patients).

Simultaneous acquisition of cerebral and cSC MP2RAGE in 8 minutes combined with the calculation of z-scores relative to HC, allows quantification of both lesion severity and global microstructural damage in pwMS. A higher overall and severe lesion volume was highlighted for PMS than RRMS. The microstructural damage in brain lesion volume and cSC is associated with disability. Severe lesion volume in the spinal cord was associated with EDSS progression however this result will be investigated in a larger, longer-term longitudinal cohort.
Nolwenn JÉGOU , Callot VIRGINIE , Thouvenot ERIC , Mathey GUILLAUME , Durand Dubief FRANÇOISE , Duche QUENTIN , Guillemot CATHERINE , Elise BANNIER (RENNES) , Benoit COMBES , Kerbrat ANNE
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GREC
Updates on GBCA: News from the ESMRMB-GREC

15:30 - 15:50 Gadolinium-enhanced MR imaging in the Brain: When, How and Why - Updates from the ESMRMB-GREC. Àlex ROVIRA (Speaker, Spain)
15:50 - 16:10 The New Generation GBCA: Non-inferior or Superior to Standard GBCA? Carlo Cosimo QUATTROCCHI (MD PhD) (Speaker, Italy)
16:10 - 16:30 Targeted Gd Agents in the Clinic; Are we there yet? Alkystis PHINIKARIDOU (Speaker, London, United Kingdom)
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16:30 TIME FOR A BREAK - Coffee and refreshments will be available at the cash bar.
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16:45 - 17:45

MANSFIELD LECTURE

16:45 - 17:45 Forensic MRI between Vision and Reality: Where is the Impact? Eva SCHEURER (Direktorin) (Keynote Speaker, Basel, Switzerland)
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17:45 - 18:15

Closing

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18:15 - 19:15

ESMRMB Annual Business Meeting

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19:15 NETWORKING DINNER